Psyllid ID: psy13849

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIISGH
ccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHEHHHHHHHHHHcccccccEEEEEEEEEEEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEEEEEEEHHHcccccHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIenkphkagpqwkfagAFYFSTVVLAMIGyghstpmtiggKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFskyegwsyfdSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFskyegwsyfdSFYYCFVTLttigfgdyvalqndhaleqkpgyVALSLVFILFGLandhaleqkpgyVALSLVFILFGLAVVAASINLLVLRFMTIISGH
mrrqnvrtlsLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIISGH
MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIISGH
******RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTII***
*RRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT****GDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTI****
MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIISGH
MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIIS**
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTIISGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
O17185329 Two pore potassium channe yes N/A 0.725 0.753 0.455 1e-69
Q63ZI0374 Potassium channel subfami N/A N/A 0.602 0.550 0.575 8e-66
Q9NPC2374 Potassium channel subfami yes N/A 0.602 0.550 0.575 1e-64
O35111409 Potassium channel subfami yes N/A 0.599 0.501 0.596 2e-64
O54912411 Potassium channel subfami yes N/A 0.599 0.498 0.596 2e-64
Q9JL58365 Potassium channel subfami yes N/A 0.602 0.564 0.570 4e-64
Q3LS21402 Potassium channel subfami no N/A 0.605 0.514 0.568 4e-64
Q9ES08396 Potassium channel subfami no N/A 0.602 0.520 0.570 6e-64
O14649394 Potassium channel subfami no N/A 0.599 0.520 0.586 9e-64
Q8R5I0318 Potassium channel subfami no N/A 0.421 0.452 0.521 5e-55
>sp|O17185|SUP9_CAEEL Two pore potassium channel protein sup-9 OS=Caenorhabditis elegans GN=sup-9 PE=1 SV=2 Back     alignment and function desciption
 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/338 (45%), Positives = 191/338 (56%), Gaps = 90/338 (26%)

Query: 1   MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYH 60
           M+RQN+RTLSL+VCT TYLLVGAAVFDALE+  E  + +L+Q  R+++  KYN+S  DY 
Sbjct: 1   MKRQNIRTLSLIVCTLTYLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYE 60

Query: 61  MLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
           +LE  ++++ PHKAG QWKF+GAFYF+T V+  IGYGHSTPMT  GK FCM YA+ GIPL
Sbjct: 61  ILEATIVKSVPHKAGYQWKFSGAFYFATTVITTIGYGHSTPMTDAGKVFCMLYALAGIPL 120

Query: 121 GLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSK 180
           GL+MFQSIGER+N                           FA  LL FI    G     K
Sbjct: 121 GLIMFQSIGERMN--------------------------TFAAKLLRFIRRAAG-----K 149

Query: 181 YEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGA 240
               +  D   +C       G+G                         GLL F     GA
Sbjct: 150 QPIVTSSDLIIFC------TGWG-------------------------GLLIF----GGA 174

Query: 241 AVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLAND 300
            +FS YE W+YFD+ YYCFVTLTTIGFGDYVALQ   +L+ +P YV  SLV         
Sbjct: 175 FMFSSYENWTYFDAVYYCFVTLTTIGFGDYVALQKRGSLQTQPEYVFFSLV--------- 225

Query: 301 HALEQKPGYVALSLVFILFGLAVVAASINLLVLRFMTI 338
                          FILFGL V++A++NLLVLRF+T+
Sbjct: 226 ---------------FILFGLTVISAAMNLLVLRFLTM 248
Potassium channel involved in coordination of muscle contraction.
Caenorhabditis elegans (taxid: 6239)
>sp|Q63ZI0|KCNK9_XENLA Potassium channel subfamily K member 9 OS=Xenopus laevis GN=kcnk9 PE=2 SV=1 Back     alignment and function description
>sp|Q9NPC2|KCNK9_HUMAN Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1 Back     alignment and function description
>sp|O35111|KCNK3_MOUSE Potassium channel subfamily K member 3 OS=Mus musculus GN=Kcnk3 PE=2 SV=2 Back     alignment and function description
>sp|O54912|KCNK3_RAT Potassium channel subfamily K member 3 OS=Rattus norvegicus GN=Kcnk3 PE=2 SV=1 Back     alignment and function description
>sp|Q9JL58|KCNK9_CAVPO Potassium channel subfamily K member 9 OS=Cavia porcellus GN=KCNK9 PE=1 SV=1 Back     alignment and function description
>sp|Q3LS21|KCNK9_MOUSE Potassium channel subfamily K member 9 OS=Mus musculus GN=Kcnk9 PE=2 SV=1 Back     alignment and function description
>sp|Q9ES08|KCNK9_RAT Potassium channel subfamily K member 9 OS=Rattus norvegicus GN=Kcnk9 PE=1 SV=2 Back     alignment and function description
>sp|O14649|KCNK3_HUMAN Potassium channel subfamily K member 3 OS=Homo sapiens GN=KCNK3 PE=1 SV=1 Back     alignment and function description
>sp|Q8R5I0|KCNKF_RAT Potassium channel subfamily K member 15 OS=Rattus norvegicus GN=Kcnk15 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
340714112334 PREDICTED: two pore potassium channel pr 0.543 0.556 0.857 1e-105
383852702336 PREDICTED: potassium channel subfamily K 0.543 0.553 0.847 1e-104
328781735335 PREDICTED: two pore potassium channel pr 0.543 0.555 0.847 1e-104
350422340334 PREDICTED: two pore potassium channel pr 0.543 0.556 0.852 1e-104
345495808336 PREDICTED: potassium channel subfamily K 0.543 0.553 0.847 1e-104
357628404309 hypothetical protein KGM_09145 [Danaus p 0.543 0.601 0.838 1e-103
328723763234 PREDICTED: two pore potassium channel pr 0.625 0.914 0.827 1e-103
170035691338 acid-sensitive two pore domain K+ channe 0.543 0.550 0.838 1e-102
307185840337 Potassium channel subfamily K member 9 [ 0.543 0.551 0.838 1e-102
58383236339 AGAP002466-PA [Anopheles gambiae str. PE 0.543 0.548 0.833 1e-102
>gi|340714112|ref|XP_003395576.1| PREDICTED: two pore potassium channel protein sup-9-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/210 (85%), Positives = 195/210 (92%)

Query: 1   MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYH 60
           M+RQNVRTLSLVVCTFTYLL+GAAVFDALESNTER+RWE L   R  M++KYNI+Q DY 
Sbjct: 1   MKRQNVRTLSLVVCTFTYLLIGAAVFDALESNTERKRWEFLSEVRRNMIKKYNITQEDYI 60

Query: 61  MLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
           MLEIV+IENKPHKAGPQWKFAGAFYF+T+VLAMIGYGHSTP+TIGGKAFCMAYAMVGIPL
Sbjct: 61  MLEIVIIENKPHKAGPQWKFAGAFYFATLVLAMIGYGHSTPVTIGGKAFCMAYAMVGIPL 120

Query: 121 GLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSK 180
           GL+MFQSIGERLNKFAS+VI+RAK  LRC+  EATEINLMFATGLLS II TTGAAVFS+
Sbjct: 121 GLIMFQSIGERLNKFASVVIKRAKTYLRCQKTEATEINLMFATGLLSSIIITTGAAVFSR 180

Query: 181 YEGWSYFDSFYYCFVTLTTIGFGDYVALQG 210
           YEGWSYFDSFYYCFVTLTTIGFGDYVALQ 
Sbjct: 181 YEGWSYFDSFYYCFVTLTTIGFGDYVALQN 210

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852702|ref|XP_003701864.1| PREDICTED: potassium channel subfamily K member 9-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328781735|ref|XP_003250024.1| PREDICTED: two pore potassium channel protein sup-9-like [Apis mellifera] gi|380025099|ref|XP_003696317.1| PREDICTED: two pore potassium channel protein sup-9-like [Apis florea] Back     alignment and taxonomy information
>gi|350422340|ref|XP_003493134.1| PREDICTED: two pore potassium channel protein sup-9-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345495808|ref|XP_001607025.2| PREDICTED: potassium channel subfamily K member 9-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|357628404|gb|EHJ77747.1| hypothetical protein KGM_09145 [Danaus plexippus] Back     alignment and taxonomy information
>gi|328723763|ref|XP_001950314.2| PREDICTED: two pore potassium channel protein sup-9-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|170035691|ref|XP_001845701.1| acid-sensitive two pore domain K+ channel dTASK-7 [Culex quinquefasciatus] gi|167878007|gb|EDS41390.1| acid-sensitive two pore domain K+ channel dTASK-7 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|307185840|gb|EFN71681.1| Potassium channel subfamily K member 9 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|58383236|ref|XP_312473.2| AGAP002466-PA [Anopheles gambiae str. PEST] gi|55242311|gb|EAA08170.2| AGAP002466-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
FB|FBgn0037690340 Task7 "TWIK-related acid-sensi 0.611 0.614 0.794 1.3e-105
FB|FBgn0038165408 Task6 "TWIK-related acid-sensi 0.611 0.512 0.655 2.4e-87
MGI|MGI:1100509409 Kcnk3 "potassium channel, subf 0.599 0.501 0.596 1.1e-72
RGD|61997411 Kcnk3 "potassium channel, subf 0.599 0.498 0.596 1.1e-72
UNIPROTKB|G3V9Y8392 Kcnk3 "Potassium channel subfa 0.473 0.413 0.567 2.4e-66
RGD|619733318 Kcnk15 "potassium channel, sub 0.611 0.657 0.521 6.1e-66
UNIPROTKB|Q8R5I0318 Kcnk15 "Potassium channel subf 0.611 0.657 0.521 6.1e-66
UNIPROTKB|F1SDS1344 KCNK15 "Uncharacterized protei 0.608 0.604 0.528 7.7e-66
UNIPROTKB|E1BEH3335 KCNK15 "Uncharacterized protei 0.608 0.620 0.533 9.8e-66
UNIPROTKB|E1BYI0374 LOC100859545 "Uncharacterized 0.602 0.550 0.575 1.4e-64
FB|FBgn0037690 Task7 "TWIK-related acid-sensitive K[+] channel 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 887 (317.3 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 166/209 (79%), Positives = 187/209 (89%)

Query:     1 MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYH 60
             M+RQNVRTLSLVVCTFTYLL+GAAVFD+LES TE +RWE LQ+ ++  +RKYN++  D+ 
Sbjct:     2 MKRQNVRTLSLVVCTFTYLLIGAAVFDSLESPTEAKRWEFLQTVKNNFVRKYNVTDEDFR 61

Query:    61 MLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
             ++EIV+IENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTP+TI GKAFCM YAMVGIPL
Sbjct:    62 VMEIVIIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPVTIPGKAFCMGYAMVGIPL 121

Query:   121 GLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSK 180
             GLVMFQSIGERLNKFAS++IRRAK        +ATE+NLM ATG+LS II TTGAAVFS+
Sbjct:   122 GLVMFQSIGERLNKFASVIIRRAKRASGARCTDATEMNLMLATGMLSSIIITTGAAVFSR 181

Query:   181 YEGWSYFDSFYYCFVTLTTIGFGDYVALQ 209
             YEGWSYFDSFYYCFVTLTTIGFGDYVALQ
Sbjct:   182 YEGWSYFDSFYYCFVTLTTIGFGDYVALQ 210
GO:0005252 "open rectifier potassium channel activity" evidence=ISS
GO:0005267 "potassium channel activity" evidence=IDA
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0071805 "potassium ion transmembrane transport" evidence=IDA
FB|FBgn0038165 Task6 "TWIK-related acid-sensitive K[+] channel 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1100509 Kcnk3 "potassium channel, subfamily K, member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61997 Kcnk3 "potassium channel, subfamily K, member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9Y8 Kcnk3 "Potassium channel subfamily K member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|619733 Kcnk15 "potassium channel, subfamily K, member 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8R5I0 Kcnk15 "Potassium channel subfamily K member 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDS1 KCNK15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEH3 KCNK15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYI0 LOC100859545 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JL58KCNK9_CAVPONo assigned EC number0.57070.60230.5643yesN/A
Q9NPC2KCNK9_HUMANNo assigned EC number0.57540.60230.5508yesN/A
O17185SUP9_CAEELNo assigned EC number0.45560.72510.7537yesN/A
O35111KCNK3_MOUSENo assigned EC number0.59620.59940.5012yesN/A
O54912KCNK3_RATNo assigned EC number0.59620.59940.4987yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
pfam0788574 pfam07885, Ion_trans_2, Ion channel 1e-09
pfam0788574 pfam07885, Ion_trans_2, Ion channel 5e-07
pfam0788574 pfam07885, Ion_trans_2, Ion channel 1e-06
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information 
 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 73  KAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIG 129
           + G  W F  A YFS V L  IGYG   P+T  G+ F + Y ++GIPL L+    +G
Sbjct: 18  EEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG4404|consensus350 100.0
KOG1418|consensus 433 99.98
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.47
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.43
KOG3713|consensus477 99.22
KOG1419|consensus 654 98.96
PRK10537393 voltage-gated potassium channel; Provisional 98.94
KOG4404|consensus350 98.9
KOG1545|consensus507 98.77
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.75
PRK10537 393 voltage-gated potassium channel; Provisional 98.72
KOG3713|consensus477 98.67
KOG1420|consensus 1103 98.6
KOG1418|consensus 433 98.49
KOG3684|consensus489 98.4
KOG1419|consensus 654 98.37
KOG4390|consensus632 98.23
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.18
KOG1545|consensus507 98.08
KOG1420|consensus 1103 97.91
KOG0498|consensus 727 97.75
KOG0501|consensus 971 97.43
KOG4390|consensus 632 97.22
KOG0498|consensus 727 97.19
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 96.58
KOG3684|consensus 489 96.52
KOG3193|consensus 1087 96.27
KOG3193|consensus 1087 96.01
PF01007 336 IRK: Inward rectifier potassium channel; InterPro: 95.78
KOG0501|consensus 971 95.38
KOG3827|consensus400 95.14
PF00520200 Ion_trans: Ion transport protein calcium channel s 88.92
KOG0500|consensus536 87.97
TIGR00933 390 2a38 potassium uptake protein, TrkH family. The pr 87.36
PF00520200 Ion_trans: Ion transport protein calcium channel s 85.88
TIGR00933390 2a38 potassium uptake protein, TrkH family. The pr 83.82
>KOG4404|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-60  Score=441.11  Aligned_cols=251  Identities=62%  Similarity=1.020  Sum_probs=229.7

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Q psy13849          1 MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKF   80 (342)
Q Consensus         1 ~k~~~~r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~   80 (342)
                      ||++|.|.+.|+++.+.|+++||++|.+||.++|.++++.+++.+++++++||+|++|++++|+++.+++|++.+++|+|
T Consensus         2 m~~qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF   81 (350)
T KOG4404|consen    2 MKRQNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKF   81 (350)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCcccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhhhccccccccchhhHHHH
Q psy13849         81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLM  160 (342)
Q Consensus        81 ~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (342)
                      .+||||+.|++||||||+.+|.|++||+|||+|+++|||+.+++++++|++++.+..+++++.|+...+++.+.+..+++
T Consensus        82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~  161 (350)
T KOG4404|consen   82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLV  161 (350)
T ss_pred             CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988776665555555543


Q ss_pred             HhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCcccccccccccccchhhhhHHHHHhhHHHHHHHhhhh
Q psy13849        161 FATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGA  240 (342)
Q Consensus       161 l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~e~~~~~~~~l~l~~~~~~~~~~~~ga  240 (342)
                      ++                                                                 .....+++++.||
T Consensus       162 ~i-----------------------------------------------------------------~~~~~~~~i~~ga  176 (350)
T KOG4404|consen  162 LI-----------------------------------------------------------------LFTACILLICCGA  176 (350)
T ss_pred             HH-----------------------------------------------------------------HHHHHHHHHHhhH
Confidence            33                                                                 2233345567899


Q ss_pred             hhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHH
Q psy13849        241 AVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFG  320 (342)
Q Consensus       241 ~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g  320 (342)
                      .+|+..|+|||+||+||||||+|||||||+|+.|+++.++++|.|                        +.++++||++|
T Consensus       177 a~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplY------------------------v~~sf~fIL~G  232 (350)
T KOG4404|consen  177 AMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLY------------------------VFFSFVFILLG  232 (350)
T ss_pred             HHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCce------------------------ehHhHHHHHHH
Confidence            999999999999999999999999999999999987766666665                        99999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q psy13849        321 LAVVAASINLLVLRFMTIIS  340 (342)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~  340 (342)
                      +++++.++|++..|||+...
T Consensus       233 l~vi~a~~NllvLrf~t~~~  252 (350)
T KOG4404|consen  233 LCVIYALLNLLVLRFMTMNA  252 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998763

>KOG1418|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>TIGR00933 2a38 potassium uptake protein, TrkH family Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>TIGR00933 2a38 potassium uptake protein, TrkH family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3ukm_A280 Crystal Structure Of The Human Two Pore Domain Pota 4e-21
3ukm_A280 Crystal Structure Of The Human Two Pore Domain Pota 3e-05
3um7_A309 Crystal Structure Of The Human Two Pore Domain K+ I 6e-20
3um7_A309 Crystal Structure Of The Human Two Pore Domain K+ I 1e-07
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 22  GAAVFDALESNTERRRWELLQSFRDEMLRKYNI---SQIDYHMLEIVVIEN------KPH 72
           GA VF ++E   E    + L+  +   L ++      Q++  +  ++   N         
Sbjct: 27  GAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQA 86
Query: 73  KAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
                W F  A +F++ VL+  GYGH+ P++ GGKAFC+ Y+++GIP  L+   ++ +R+
Sbjct: 87  SGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146
Query: 133 NKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTT----GAAVFSKYE-GWSYF 187
                 V RR           + ++  +    LL F+  +      AAVFS  E  W++ 
Sbjct: 147 TVH---VTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFL 203
Query: 188 DSFYYCFVTLTTIGFGDYVALQG 210
           +SFY+CF++L+TIG GDYV  +G
Sbjct: 204 ESFYFCFISLSTIGLGDYVPGEG 226
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280 Back     alignment and structure
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309 Back     alignment and structure
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3um7_A309 Potassium channel subfamily K member 4; potassium 2e-45
3um7_A309 Potassium channel subfamily K member 4; potassium 2e-13
3ukm_A280 Potassium channel subfamily K member 1; membrane p 5e-42
3ukm_A280 Potassium channel subfamily K member 1; membrane p 7e-13
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 1e-09
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 1e-09
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 1e-05
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 5e-09
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 9e-09
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 6e-05
2q67_A114 Potassium channel protein; inverted teepee, helix 5e-09
2q67_A114 Potassium channel protein; inverted teepee, helix 5e-09
2q67_A114 Potassium channel protein; inverted teepee, helix 1e-05
3ouf_A97 Potassium channel protein; ION channel, membrane, 8e-09
3ouf_A97 Potassium channel protein; ION channel, membrane, 9e-09
3ouf_A97 Potassium channel protein; ION channel, membrane, 3e-06
1lnq_A 336 MTHK channels, potassium channel related protein; 7e-08
1lnq_A 336 MTHK channels, potassium channel related protein; 6e-07
1lnq_A336 MTHK channels, potassium channel related protein; 5e-04
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 2e-04
1p7b_A333 Integral membrane channel and cytosolic domains; t 3e-04
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309 Back     alignment and structure
 Score =  156 bits (395), Expect = 2e-45
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 2   RRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKY-NISQIDYH 60
             ++   L+L+     YL+ GA VF ALE   E++    L   R++ LR +  +S  +  
Sbjct: 26  AMRSTTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELG 85

Query: 61  MLEIVVIE-----------NKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAF 109
           +L   V +           +    +   W    AF+FS  ++  IGYG+    T  G+ F
Sbjct: 86  LLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLF 145

Query: 110 CMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEAT---EINLMFATGLL 166
           C+ YA+VGIPL  ++   +G+RL       I   + +    H        ++ M    + 
Sbjct: 146 CIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIG 205

Query: 167 SFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE--ATEINL 224
             +   T   VF   E WS  ++ Y+  VTLTT+GFGDYVA     +   A        +
Sbjct: 206 CLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWI 265

Query: 225 MFATGLLSFIITTTGAAVFSKYE 247
           +      + ++TT G  +     
Sbjct: 266 LLGLAYFASVLTTIGNWLRVVSR 288
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
3um7_A309 Potassium channel subfamily K member 4; potassium 100.0
3ukm_A280 Potassium channel subfamily K member 1; membrane p 100.0
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.66
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.63
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.63
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.62
2q67_A114 Potassium channel protein; inverted teepee, helix 99.61
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.59
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.57
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.55
2q67_A114 Potassium channel protein; inverted teepee, helix 99.54
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.54
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.53
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.52
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.49
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.48
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.47
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.44
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.44
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.43
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.4
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.31
3um7_A309 Potassium channel subfamily K member 4; potassium 99.3
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.3
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.29
1lnq_A336 MTHK channels, potassium channel related protein; 99.14
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.14
1lnq_A 336 MTHK channels, potassium channel related protein; 99.06
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 99.05
1xl4_A301 Inward rectifier potassium channel; integral membr 99.04
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.0
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.94
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.94
3beh_A 355 MLL3241 protein; transmembrane protein, membrane p 98.92
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.91
1xl4_A 301 Inward rectifier potassium channel; integral membr 98.88
1p7b_A 333 Integral membrane channel and cytosolic domains; t 98.84
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.74
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.68
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.48
3sya_A340 G protein-activated inward rectifier potassium CH; 98.34
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.21
3sya_A 340 G protein-activated inward rectifier potassium CH; 98.08
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 97.9
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.16
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.02
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.7e-45  Score=345.66  Aligned_cols=244  Identities=30%  Similarity=0.524  Sum_probs=188.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh-----CC------CCC
Q psy13849          7 RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRK-YNISQIDYHMLEIVVIEN-----KP------HKA   74 (342)
Q Consensus         7 r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~-~n~~~~~~~~l~~~~~~~-----~~------~~~   74 (342)
                      ..+.|++++++|+++||++|+.||+|+|.++++.+++.+++++++ .|++++|++++++.+.++     ++      +..
T Consensus        31 ~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~  110 (309)
T 3um7_A           31 TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSS  110 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCC
Confidence            356788899999999999999999999999988888888876655 479999999888776543     22      223


Q ss_pred             CCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhhhccccccccch
Q psy13849         75 GPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEA  154 (342)
Q Consensus        75 ~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  154 (342)
                      +++|++.+|+||+.+|+|||||||++|.|+.||+||++|+++|||+++++++.+++.+.+..++..++.++...+++...
T Consensus       111 ~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~  190 (309)
T 3um7_A          111 HSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPP  190 (309)
T ss_dssp             --CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--C
T ss_pred             CCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccch
Confidence            46799999999999999999999999999999999999999999999999999999887765544444332221111000


Q ss_pred             hhHHHHHhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCcccccccccccccchhhhhHHHHHhhHHHHH
Q psy13849        155 TEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFI  234 (342)
Q Consensus       155 ~~~~l~l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~e~~~~~~~~l~l~~~~~~~~  234 (342)
                      ...                                                              .....++.+.+..++
T Consensus       191 ~~~--------------------------------------------------------------~~~~~~l~~~~~~~~  208 (309)
T 3um7_A          191 ELV--------------------------------------------------------------RVLSAMLFLLIGCLL  208 (309)
T ss_dssp             CHH--------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred             hHH--------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence            000                                                              000111122222345


Q ss_pred             HHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHH
Q psy13849        235 ITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSL  314 (342)
Q Consensus       235 ~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~  314 (342)
                      ++++|+.+|+..|+|+|+||+||+++|+|||||||++|.++.+.  .+|.                        |+++++
T Consensus       209 ~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~--~~~~------------------------y~~~~~  262 (309)
T 3um7_A          209 FVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ--DSPA------------------------YQPLVW  262 (309)
T ss_dssp             HTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC--CCST------------------------HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc--ccch------------------------HHHHHH
Confidence            56789999999999999999999999999999999999987662  2344                        499999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy13849        315 VFILFGLAVVAASINLLVLRFMTI  338 (342)
Q Consensus       315 ~~~~~g~~~~~~~~~~~~~~~~~~  338 (342)
                      +|+++|+++++++++.+++.+...
T Consensus       263 ~~il~Gl~~~a~~~~~i~~~~~~~  286 (309)
T 3um7_A          263 FWILLGLAYFASVLTTIGNWLRVV  286 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988765444
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 3e-08
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 5e-08
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-06
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 0.003
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 0.004
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALS 289
           LL   +   G A F   EG S+  S Y+ FVT+ T+G+GDY            P  +  +
Sbjct: 7   LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP--------STPLGMYFT 58

Query: 290 LVFILFGLA 298
           +  I+ G+ 
Sbjct: 59  VTLIVLGIG 67
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.54
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.54
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.51
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.4
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.27
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.25
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.13
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.09
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.34
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.27
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.54  E-value=1.2e-15  Score=119.96  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeee
Q psy13849         10 SLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTV   89 (342)
Q Consensus        10 ~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~   89 (342)
                      ..+.++++.+++|+.+++..|++.                                       ++....++.||+||+++
T Consensus        10 ~~~~~~~~~~~~~s~~~~~~e~~~---------------------------------------~~~~~~s~~~aly~~~v   50 (103)
T d1r3jc_          10 AATVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWSVE   50 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------TTCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC---------------------------------------CCcccCchhhhhhhhee
Confidence            344556667788999999999542                                       12234689999999999


Q ss_pred             eEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849         90 VLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK  134 (342)
Q Consensus        90 ~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~  134 (342)
                      |+|||||||+.|+|+.||++++++++.|+.++.+.++.+++.+.+
T Consensus        51 T~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          51 TATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             HHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888766543
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure