Psyllid ID: psy13888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPRH
Secondary Structure (PSIPRED)
cccccccccccEEEEEEccccccccccccHHHHHHcEEEEEEEcccccEEEEEccccEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
sktsipkrgeynvystfqshepefdyLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPRH
Flexible Loop (DISEMBL)
sktsipkrgeynvystfqshepefdYLKSLEIEEKINKIRWLRRKNQahfllstndfefLIFIYSRFPRH
Low Complexity Region (SEG)
SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPRH
Disordered region (IsUnstruct)
***********NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR****
Disordered Region (DISOPRED)
************VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR****
Disordered Region (DISEMBL)
SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPRH
Disordered Region (DISPRO)
******KRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
P36872	499	Protein phosphatase PP2A	yes	N/A	0.8	0.112	0.857	3e-22
P54614	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
P36877	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
Q5R4A2	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
Q6ZWR4	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
Q4R8L3	443	Serine/threonine-protein	N/A	N/A	0.8	0.126	0.821	2e-20
Q00005	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
Q5E9Q7	443	Serine/threonine-protein	yes	N/A	0.8	0.126	0.821	2e-20
Q00006	413	Serine/threonine-protein	yes	N/A	0.8	0.135	0.821	2e-20
Q6NY64	447	Serine/threonine-protein	yes	N/A	0.8	0.125	0.839	3e-20

>sp|P36872|2ABA_DROME Protein phosphatase PP2A 55 kDa regulatory subunit OS=Drosophila melanogaster GN=tws PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 52/56 (92%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK + P+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL++KN  HFLLSTND
Sbjct: 114 SKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTND 169

Could perform a substrate recognition function or could be responsible for targeting the enzyme complex to the appropriate subcellular compartment.
Drosophila melanogaster (taxid: 7227)

>sp|P54614|2ABB_PIG Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Sus scrofa GN=PPP2R2B PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Sus scrofa (taxid: 9823)

>sp|P36877|2ABB_RAT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Rattus norvegicus GN=Ppp2r2b PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. Within the PP2A holoenzyme complex, isoform 2 is required to promote proapoptotic activity. Isoform 2 regulates neuronal survival through the mitochondrial fission and fusion balance.

Rattus norvegicus (taxid: 10116)

>sp|Q5R4A2|2ABB_PONAB Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Pongo abelii GN=PPP2R2B PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Pongo abelii (taxid: 9601)

>sp|Q6ZWR4|2ABB_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Mus musculus GN=Ppp2r2b PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity). Within the PP2A holoenzyme complex, isoform 2 is required to promote proapoptotic activity (By similarity). Isoform 2 regulates neuronal survival through the mitochondrial fission and fusion balance.

Mus musculus (taxid: 10090)

>sp|Q4R8L3|2ABB_MACFA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Macaca fascicularis GN=PPP2R2B PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Macaca fascicularis (taxid: 9541)

>sp|Q00005|2ABB_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Homo sapiens GN=PPP2R2B PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. Within the PP2A holoenzyme complex, isoform 2 is required to promote proapoptotic activity (By similarity). Isoform 2 regulates neuronal survival through the mitochondrial fission and fusion balance.

Homo sapiens (taxid: 9606)

>sp|Q5E9Q7|2ABB_BOVIN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Bos taurus GN=PPP2R2B PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 57  SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Bos taurus (taxid: 9913)

>sp|Q00006|2ABB_RABIT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (Fragment) OS=Oryctolagus cuniculus GN=PPP2R2B PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1  SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
          SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct: 27 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 82

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q6NY64|2ABD_DANRE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Danio rerio GN=ppp2r2d PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 49/56 (87%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK     RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N AHFLLSTND
Sbjct: 61  SKNRPLSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTND 116

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
242011345	478	protein phosphatase PP2A 55 kDa regulato	0.8	0.117	0.964	3e-24
321466028	443	protein phosphatase-like protein 2A regu	0.8	0.126	0.964	4e-24
328709339	451	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.124	0.928	2e-23
328709341	505	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.110	0.928	2e-23
328709337	443	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.126	0.928	2e-23
158292269	445	AGAP004502-PA [Anopheles gambiae str. PE	0.8	0.125	0.928	4e-23
357606219	460	putative protein phosphatase pp2a regula	0.8	0.121	0.910	4e-23
340725467	469	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.119	0.928	5e-23
383858543	469	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.119	0.928	5e-23
328783306	469	PREDICTED: protein phosphatase PP2A 55 k	0.8	0.119	0.928	5e-23

>gi|242011345|ref|XP_002426413.1| protein phosphatase PP2A 55 kDa regulatory subunit, putative [Pediculus humanus corporis] gi|212510512|gb|EEB13675.1| protein phosphatase PP2A 55 kDa regulatory subunit, putative [Pediculus humanus corporis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SKTSIP+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL+RKNQAHFLLSTND
Sbjct: 93  SKTSIPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRKNQAHFLLSTND 148

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466028|gb|EFX77026.1| protein phosphatase-like protein 2A regulatoru subunot PR55 [Daphnia pulex]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 55/56 (98%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SKTS+PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN AHFLLSTND
Sbjct: 58  SKTSVPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNPAHFLLSTND 113

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709339|ref|XP_001949195.2| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SKT IP+RG+Y VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND
Sbjct: 66  SKTCIPRRGDYTVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709341|ref|XP_003243935.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 3 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SKT IP+RG+Y VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND
Sbjct: 120 SKTCIPRRGDYTVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 175

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709337|ref|XP_003243934.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SKT IP+RG+Y VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND
Sbjct: 58  SKTCIPRRGDYTVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 113

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292269|ref|XP_313800.4| AGAP004502-PA [Anopheles gambiae str. PEST] gi|157017356|gb|EAA09262.5| AGAP004502-PA [Anopheles gambiae str. PEST]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK S P+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ+HFLLSTND
Sbjct: 58  SKASTPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQSHFLLSTND 113

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606219|gb|EHJ64958.1| putative protein phosphatase pp2a regulatory subunit b [Danaus plexippus]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK  +PK+GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL+RKNQAHFLLSTND
Sbjct: 65  SKQCVPKKGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRKNQAHFLLSTND 120

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725467|ref|XP_003401091.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Bombus terrestris] gi|340725469|ref|XP_003401092.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Bombus terrestris] gi|350415112|ref|XP_003490537.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Bombus impatiens] gi|350415115|ref|XP_003490538.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Bombus impatiens]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK SIP+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL+RKN AHFLLSTND
Sbjct: 84  SKNSIPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRKNPAHFLLSTND 139

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858543|ref|XP_003704760.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Megachile rotundata]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK SIP+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL+RKN AHFLLSTND
Sbjct: 84  SKNSIPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRKNPAHFLLSTND 139

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783306|ref|XP_394082.3| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit isoform 1 [Apis mellifera]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           SK SIP+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL+RKN AHFLLSTND
Sbjct: 84  SKNSIPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRKNPAHFLLSTND 139

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0004889	499	tws "twins" [Drosophila melano	0.8	0.112	0.857	1.2e-21
UNIPROTKB|Q5E9Q7	443	PPP2R2B "Serine/threonine-prot	0.8	0.126	0.821	2.1e-20
UNIPROTKB|Q00005	443	PPP2R2B "Serine/threonine-prot	0.8	0.126	0.821	2.1e-20
UNIPROTKB|P54614	443	PPP2R2B "Serine/threonine-prot	0.8	0.126	0.821	2.1e-20
MGI|MGI:1920180	443	Ppp2r2b "protein phosphatase 2	0.8	0.126	0.821	2.1e-20
RGD|631441	443	Ppp2r2b "protein phosphatase 2	0.8	0.126	0.821	2.1e-20
UNIPROTKB|P36877	443	Ppp2r2b "Serine/threonine-prot	0.8	0.126	0.821	2.1e-20
UNIPROTKB|I3LCY8	444	PPP2R2B "Serine/threonine-prot	0.8	0.126	0.821	2.1e-20
UNIPROTKB|F1Q3I7	501	PPP2R2B "Uncharacterized prote	0.8	0.111	0.821	3.2e-20
UNIPROTKB|F1NBJ2	420	PPP2R2A "Uncharacterized prote	0.8	0.133	0.839	3.5e-20

FB|FBgn0004889 tws "twins" [Drosophila melanogaster (taxid:7227)]

 Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 48/56 (85%), Positives = 52/56 (92%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK + P+RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL++KN  HFLLSTND
Sbjct:   114 SKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTND 169

GO:0007088 "regulation of mitosis" evidence=IMP

GO:0000090 "mitotic anaphase" evidence=IMP

GO:0007447 "imaginal disc pattern formation" evidence=IMP

GO:0006470 "protein dephosphorylation" evidence=ISS;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS;NAS

GO:0007423 "sensory organ development" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=NAS;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI;IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

GO:0045201 "maintenance of neuroblast polarity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007406 "negative regulation of neuroblast proliferation" evidence=IMP

UNIPROTKB|Q5E9Q7 PPP2R2B "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0016020 "membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q00005 PPP2R2B "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0034047 "regulation of protein phosphatase type 2A activity" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P54614 PPP2R2B "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0016020 "membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1920180 Ppp2r2b "protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0034047 "regulation of protein phosphatase type 2A activity" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISO

RGD|631441 Ppp2r2b "protein phosphatase 2, regulatory subunit B, beta" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0000266 "mitochondrial fission" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA;IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0007286 "spermatid development" evidence=IEP

GO:0007420 "brain development" evidence=IEP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0030182 "neuron differentiation" evidence=IEP

GO:0032403 "protein complex binding" evidence=IDA

GO:0033554 "cellular response to stress" evidence=IEP

GO:0034047 "regulation of protein phosphatase type 2A activity" evidence=IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IDA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IMP

UNIPROTKB|P36877 Ppp2r2b "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|I3LCY8 PPP2R2B "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:    57 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 112

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|F1Q3I7 PPP2R2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             SK  + +RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL ++N A+FLLSTND
Sbjct:   115 SKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTND 170

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|F1NBJ2 PPP2R2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 243 (90.6 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/56 (83%), Positives = 49/56 (87%)

Query:     1 SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
             +KT    RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL +KN A FLLSTND
Sbjct:    34 NKTQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 89

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39247	2ABB_ARATH	No assigned EC number	0.7446	0.6714	0.0938	yes	N/A
Q54Q99	PH2AB_DICDI	No assigned EC number	0.6909	0.7428	0.1076	yes	N/A
Q00005	2ABB_HUMAN	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
Q00006	2ABB_RABIT	No assigned EC number	0.8214	0.8	0.1355	yes	N/A
Q6DIY3	2ABD_XENTR	No assigned EC number	0.9183	0.7	0.1096	yes	N/A
P36876	2ABA_RAT	No assigned EC number	0.9183	0.7	0.1096	no	N/A
P36877	2ABB_RAT	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
P36872	2ABA_DROME	No assigned EC number	0.8571	0.8	0.1122	yes	N/A
Q5E9Q7	2ABB_BOVIN	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
Q29090	2ABA_PIG	No assigned EC number	0.9183	0.7	0.1150	no	N/A
Q66LE6	2ABD_HUMAN	No assigned EC number	0.9183	0.7	0.1081	no	N/A
Q5R4A2	2ABB_PONAB	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
Q12702	2ABA_SCHPO	No assigned EC number	0.78	0.7142	0.1079	yes	N/A
P56932	2ABD_RAT	No assigned EC number	0.9183	0.7	0.1081	no	N/A
P63151	2ABA_HUMAN	No assigned EC number	0.9183	0.7	0.1096	no	N/A
P63150	2ABA_RABIT	No assigned EC number	0.9183	0.7	0.1096	no	N/A
Q4R7Z4	2ABA_MACFA	No assigned EC number	0.9183	0.7	0.1096	N/A	N/A
Q6ZWR4	2ABB_MOUSE	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
Q5ZIY5	2ABD_CHICK	No assigned EC number	0.9183	0.7	0.1086	no	N/A
Q00362	2ABA_YEAST	No assigned EC number	0.7021	0.6714	0.0893	yes	N/A
Q6NY64	2ABD_DANRE	No assigned EC number	0.8392	0.8	0.1252	yes	N/A
P54614	2ABB_PIG	No assigned EC number	0.8214	0.8	0.1264	yes	N/A
Q925E7	2ABD_MOUSE	No assigned EC number	0.9183	0.7	0.1081	no	N/A
Q6P1F6	2ABA_MOUSE	No assigned EC number	0.9183	0.7	0.1096	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	6e-19

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score = 78.1 bits (192), Expect = 6e-19
 Identities = 32/50 (64%), Positives = 35/50 (70%)

Query: 7   KRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
              EY  ++ FQSHE EFDYLKSLEIEEKIN I W     + HFLLSTND
Sbjct: 59  YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108

Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG1354|consensus	433		99.97
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	96.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.31
KOG0279|consensus	315		94.1
KOG0645|consensus	312		92.98
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	90.75
KOG1446|consensus	311		90.44
KOG0273|consensus	524		88.16
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	87.62
KOG0282|consensus	503		86.81
KOG1063|consensus	764		86.4
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	83.52
KOG0318|consensus	603		81.29
PTZ00421	493	coronin; Provisional	80.2

>KOG1354|consensus

Probab=99.97  E-value=2.7e-32  Score=214.42  Aligned_cols=60  Identities=65%  Similarity=0.939  Sum_probs=58.3

Q ss_pred             ceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888          9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP   68 (70)
Q Consensus         9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p   68 (70)
                      +||+|+++|||||||||||||||||||||+||||+++|.++|||||||||||||||++.-
T Consensus        60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~  119 (433)
T KOG1354|consen   60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERG  119 (433)
T ss_pred             cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccc
Confidence            599999999999999999999999999999999999999999999999999999999863

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.97  E-value=7.7e-32  Score=212.01  Aligned_cols=62  Identities=52%  Similarity=0.782  Sum_probs=59.9

Q ss_pred             CCcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888          6 PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus         6 ~~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ...|||+|+|||||||||||||||||||||||+|+||++++.++|||||||||||||||++.
T Consensus        58 s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyek  119 (460)
T COG5170          58 SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK  119 (460)
T ss_pred             ccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecc
Confidence            35799999999999999999999999999999999999999999999999999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=96.51  E-value=0.0064  Score=30.79  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      .-|+.|.|.+.  ...++-++.|++|++|+
T Consensus        12 ~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             CcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            45899999988  56788889999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>smart00320 WD40 WD40 repeats

Probab=95.31  E-value=0.03  Score=24.63  Aligned_cols=27  Identities=4%  Similarity=0.084  Sum_probs=21.9

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      .|+++.|.+..  ..++.++.|++|.+|.
T Consensus        14 ~i~~~~~~~~~--~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDG--KYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCC--CEEEEecCCCeEEEcC
Confidence            47889997755  5788888999999994

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0279|consensus

Probab=94.10  E-value=0.05  Score=42.75  Aligned_cols=34  Identities=9%  Similarity=0.142  Sum_probs=27.5

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .+=|++++|.|+.....++=+++|||+|+|.+.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence            4558999999988655566677999999999865

>KOG0645|consensus

Probab=92.98  E-value=0.11  Score=40.81  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             CcceeeEEEeeec-cCcccccccccch--hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888          7 KRGEYNVYSTFQS-HEPEFDYLKSLEI--EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus         7 ~~~ey~~~teFQS-He~EFDYLkSleI--eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      +.+.++.+.+=-+ -+|.|.-|-+.+-  |--||+|.|.+ +..+.++..++|++|++|++.
T Consensus       251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-CCCCceeecCCCceEEEEEec
Confidence            4455665555422 3688887765432  34799999999 556788889999999999974

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=90.75  E-value=0.48  Score=27.12  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=27.8

Q ss_pred             chhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...++|..+.|||..+  .+-++++|+.|-|+|++
T Consensus         9 ~l~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence            3455688999999876  88899999999999983

>KOG1446|consensus

Probab=90.44  E-value=0.49  Score=37.17  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      +|.--|+.|.            ..||.|+=+|-.  ..||=++.||||+||.++
T Consensus        91 kylRYF~GH~------------~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR  130 (311)
T KOG1446|consen   91 KYLRYFPGHK------------KRVNSLSVSPKD--DTFLSSSLDKTVRLWDLR  130 (311)
T ss_pred             ceEEEcCCCC------------ceEEEEEecCCC--CeEEecccCCeEEeeEec
Confidence            5666788886            468888866554  789999999999999997

>KOG0273|consensus

Probab=88.16  E-value=0.47  Score=39.56  Aligned_cols=30  Identities=13%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      +||.|+|.+++.  .++=++.|.|+|||.+.+
T Consensus       361 ~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  361 EVNALKWNPTGS--LLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             ceEEEEECCCCc--eEEEecCCCeeEeeecCC
Confidence            599999998764  455566889999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=87.62  E-value=0.85  Score=28.12  Aligned_cols=31  Identities=3%  Similarity=0.001  Sum_probs=24.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..+.|.+..  ..++.+++|++|++|.+..
T Consensus        52 ~~i~~~~~~~~~--~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200          52 GPVRDVAASADG--TYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             cceeEEEECCCC--CEEEEEcCCCeEEEEEcCc
Confidence            345788998765  5777788899999999875

>KOG0282|consensus

Probab=86.81  E-value=0.46  Score=39.44  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=24.0

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      =|.+|+|++... .+||=+++|..||||.|+.
T Consensus       216 gvsai~~fp~~~-hLlLS~gmD~~vklW~vy~  246 (503)
T KOG0282|consen  216 GVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYD  246 (503)
T ss_pred             ccchhhhcccee-eEEEecCCCceEEEEEEec
Confidence            378899998665 3444457999999999986

>KOG1063|consensus

Probab=86.40  E-value=0.82  Score=39.62  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             hhhceeEeeeCCCCceEEeee-CCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLST-NDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLst-NdktiKLWkv~   65 (70)
                      ..||+++|++......+|+|+ -|++|+||+++
T Consensus        55 a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~   87 (764)
T KOG1063|consen   55 ARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR   87 (764)
T ss_pred             cceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence            469999999887644466665 69999999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=83.52  E-value=2.1  Score=26.33  Aligned_cols=31  Identities=3%  Similarity=0.018  Sum_probs=23.6

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|.+|.|.+.  ...++.++.|++|.+|.+..
T Consensus        10 ~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~   40 (289)
T cd00200          10 GGVTCVAFSPD--GKLLATGSGDGTIKVWDLET   40 (289)
T ss_pred             CCEEEEEEcCC--CCEEEEeecCcEEEEEEeeC
Confidence            56889999776  34566666699999999864

>KOG0318|consensus

Probab=81.29  E-value=1.9  Score=36.58  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      -|=+|.|.|...  +||=++-|||+|+|.|+..
T Consensus       237 sIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  237 SIFALSWSPDST--QFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             cEEEEEECCCCc--eEEEecCCceEEEEEeecc
Confidence            467889987654  7888999999999999865

>PTZ00421 coronin; Provisional

Probab=80.20  E-value=2.3  Score=33.87  Aligned_cols=33  Identities=9%  Similarity=0.080  Sum_probs=25.4

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.|.|.+.. ...++-++.|++|++|.+..
T Consensus        75 ~~~V~~v~fsP~d-~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         75 EGPIIDVAFNPFD-PQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             CCCEEEEEEcCCC-CCEEEEEeCCCEEEEEecCC
Confidence            3568999998743 34677778999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		7e-21

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 46/49 (93%)
Query: 8   RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL +KN A FLLSTND
Sbjct: 68  RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-15

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 66.7 bits (162), Expect = 4e-15
 Identities = 46/56 (82%), Positives = 48/56 (85%)

Query: 1   SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           +K     RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL +KN A FLLSTND
Sbjct: 61  NKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.27
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.62
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	94.5
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.25
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.22
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.78
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	93.66
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.6
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	93.43
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.26
2pm7_B	297	Protein transport protein SEC13, protein transport	93.1
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.08
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.7
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.61
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.51
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.99
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	91.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.87
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.72
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	91.61
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	91.56
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.41
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.35
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.3
2pm7_B	297	Protein transport protein SEC13, protein transport	91.19
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	91.06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	91.04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	90.75
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	90.71
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	90.62
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.45
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	90.29
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.24
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	89.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	89.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	89.7
3jro_A	753	Fusion protein of protein transport protein SEC13	89.52
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	89.5
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	89.38
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	89.21
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	89.21
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	88.8
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	88.77
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	88.72
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	88.57
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	88.55
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.5
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	88.49
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	88.42
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	88.34
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	88.19
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	87.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.53
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	87.51
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	87.47
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	87.24
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	87.2
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	87.09
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.63
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.09
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	85.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	85.88
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	85.76
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	85.52
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	85.38
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	85.36
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	85.32
3ow8_A	321	WD repeat-containing protein 61; structural genomi	84.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	84.82
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	84.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	84.43
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	84.42
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	84.22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	84.13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	84.1
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	84.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	83.83
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	83.74
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	83.21
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.09
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	83.03
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	82.54
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	82.15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	81.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	81.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	81.84
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	81.57
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	81.44

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=83.40  Aligned_cols=61  Identities=75%  Similarity=1.112  Sum_probs=56.6

Q ss_pred             CCcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888          6 PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus         6 ~~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...++|+...+|++|.+||||+++++++..|+.|.|.+..+...++.++.|++|+||.+..
T Consensus        66 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~  126 (447)
T 3dw8_B           66 HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE  126 (447)
T ss_dssp             CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred             ccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence            3457899999999999999999999999999999999998778999999999999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.98  E-value=0.01  Score=37.45  Aligned_cols=32  Identities=6%  Similarity=0.046  Sum_probs=24.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|++|.|-+.+  ..++-++.|++|+||++.+.
T Consensus       285 ~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          285 SRVLSLTMSPDG--ATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SCEEEEEECTTS--SCEEEEETTTEEEEECCSCC
T ss_pred             CCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence            468999997643  35555679999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.62  E-value=0.025  Score=35.23  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|.+|.|.+..+...++.++.|++|++|.+..
T Consensus        57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            3468999999876567888889999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=94.50  E-value=0.04  Score=35.09  Aligned_cols=31  Identities=13%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             hhhceeEeeeCCCCceEEe-eeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLL-STNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LL-stNdktiKLWkv~e   66 (70)
                      .-|++|.|.|..+  .+|+ ++.|++|+||.+..
T Consensus        39 ~~V~~v~~sp~~~--~~l~S~s~D~~i~vWd~~~   70 (340)
T 4aow_A           39 GWVTQIATTPQFP--DMILSASRDKTIIMWKLTR   70 (340)
T ss_dssp             SCEEEEEECTTCT--TEEEEEETTSCEEEEEECC
T ss_pred             CCEEEEEEeCCCC--CEEEEEcCCCeEEEEECCC
Confidence            3489999976533  3555 56899999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.25  E-value=0.048  Score=37.32  Aligned_cols=32  Identities=6%  Similarity=0.046  Sum_probs=24.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|+.|.|-+.+  ..++-++.|++|+||+|.+.
T Consensus       365 ~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          365 SRVLSLTMSPDG--ATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             SCEEEEEECTTS--SCEEEEETTTEEEEECCSCS
T ss_pred             CCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence            358899987643  35566679999999999764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.22  E-value=0.037  Score=38.06  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             hhhhceeEeeeCCC-----CceEEee-eCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKN-----QAHFLLS-TNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~-----~~~~LLs-tNdktiKLWkv~e   66 (70)
                      ...|+.|.|.+...     ..++|+| +.|+||+||.+..
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            35799999987432     2356665 5999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.78  E-value=0.048  Score=34.69  Aligned_cols=36  Identities=11%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .-...|+.|.|++..+...++.++.|++|++|.+..
T Consensus       125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            445679999999888888888889999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=93.66  E-value=0.095  Score=33.31  Aligned_cols=32  Identities=6%  Similarity=0.140  Sum_probs=23.8

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+++.|-+.  ...++-++.|++|+||++.-
T Consensus       306 ~~~v~~l~~s~d--g~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          306 PPQCTSLAWSAD--GQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             CCCEEEEEECTT--SSEEEEEETTSCEEEEEEEC
T ss_pred             CCCEEEEEECCC--CCEEEEEeCCCEEEEEeCCC
Confidence            346888888654  34555567999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.60  E-value=0.11  Score=34.44  Aligned_cols=33  Identities=9%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|+.|.|.+..+...++-++.|++|+||.+..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            358899998765556777778999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=93.43  E-value=0.068  Score=35.99  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=26.7

Q ss_pred             hhhhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      -...|+.|.|.+..+...++-+.+|++|+||+
T Consensus       406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            35679999999997767777788999999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.26  E-value=0.08  Score=33.92  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=28.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..|.|.+..+...++.++.|++|++|.+..
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence            468999999877677888889999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.10  E-value=0.078  Score=34.66  Aligned_cols=33  Identities=12%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++|.|.+......++-++.|++|+||.+..
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            458899998765455677778899999999853

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.08  E-value=0.13  Score=31.89  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             hhhceeEeeeCCCC--ceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQ--AHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~--~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|+.|.|.+.++.  ..++.++.|++|++|.+...
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            46899999887643  56777788999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.98  E-value=0.32  Score=32.28  Aligned_cols=33  Identities=6%  Similarity=0.098  Sum_probs=25.8

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..+.|-+..+...++-++.|++|+||++..
T Consensus       198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            357888888776555666778999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.70  E-value=0.093  Score=34.93  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .|+.+.|.+..+...++-++.|++|+||.+..
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            58899998864445566668999999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.70  E-value=0.31  Score=32.58  Aligned_cols=31  Identities=6%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|+.|.|.+.  ...++-++.|++|++|.+..
T Consensus       106 ~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A          106 NEVKSVAWAPS--GNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SCEEEEEECTT--SSEEEEEETTSCEEEEEECT
T ss_pred             CCceEEEEeCC--CCEEEEEECCCeEEEEECCC
Confidence            45899999774  34677778999999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.61  E-value=0.2  Score=31.25  Aligned_cols=42  Identities=10%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .++...+|+.|.            ..|++|.| +  +...++.++.|++|++|.+..
T Consensus         7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~   48 (313)
T 3odt_A            7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDD   48 (313)
T ss_dssp             CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESS
T ss_pred             cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCC
Confidence            456677777775            46899999 4  345688889999999999853

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.51  E-value=0.23  Score=31.95  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=33.5

Q ss_pred             cceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888          8 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus         8 ~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .+.+.....++.|.            ..|++|.|-+.  ...++.++.|++|+||.+.
T Consensus        10 ~~~~~~~~~~~gh~------------~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~   53 (312)
T 4ery_A           10 KPNYALKFTLAGHT------------KAVSSVKFSPN--GEWLASSSADKLIKIWGAY   53 (312)
T ss_dssp             CCCCEEEEEECCCS------------SCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             CCCceeEEEEcccC------------CcEEEEEECCC--CCEEEEeeCCCeEEEEeCC
Confidence            34567777788886            46899999764  4467777899999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.00  E-value=0.16  Score=34.86  Aligned_cols=32  Identities=9%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             hhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      -+.-|+.+.|.+.   ..++.++.|++|+||.+..
T Consensus        81 ~~~~v~~~~~s~d---~~l~~~s~dg~v~lWd~~~  112 (344)
T 4gqb_B           81 TEAGVADLTWVGE---RGILVASDSGAVELWELDE  112 (344)
T ss_dssp             ESSCEEEEEEETT---TEEEEEETTSEEEEEEECT
T ss_pred             cCCCEEEEEEeCC---CeEEEEECCCEEEEEeccC
Confidence            3456999999875   4688999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.99  E-value=0.4  Score=30.80  Aligned_cols=32  Identities=6%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.|.|.+  +...++.++.|++|++|.+..
T Consensus        52 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C           52 NGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             SSCEEEEEEET--TTTEEEEEETTSCEEEEEEET
T ss_pred             CCcccEEEEeC--CCCEEEEEcCCCeEEEEECCC
Confidence            35699999987  345777888999999999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=91.93  E-value=0.17  Score=33.89  Aligned_cols=34  Identities=18%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ...|++|.|.+... ..+.-++.|++|+||++...
T Consensus       303 ~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          303 SQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             SSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-
T ss_pred             cCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCC
Confidence            35699999987532 24555668999999998753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.87  E-value=0.27  Score=32.16  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=27.2

Q ss_pred             hhhhceeEeeeCCC--------CceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKN--------QAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~--------~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.+.|.+.+.        ...++.++.|++|++|++..
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            56799999998762        25677778899999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.72  E-value=0.18  Score=33.76  Aligned_cols=33  Identities=15%  Similarity=0.286  Sum_probs=23.2

Q ss_pred             hhhhceeEeeeCC--CCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRK--NQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~--~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|.+|.|.+..  +...++-++.|++||||.+.
T Consensus        32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~   66 (321)
T 3ow8_A           32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR   66 (321)
T ss_dssp             SSCEEEEEEC-------CEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC
Confidence            3578999998763  45566667899999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=91.61  E-value=0.2  Score=33.10  Aligned_cols=33  Identities=12%  Similarity=0.290  Sum_probs=26.6

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++|.|.+......++-++.|++|+||.+..
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            358899998876566777788999999998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.59  E-value=0.23  Score=31.96  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=25.9

Q ss_pred             hhhhceeEeeeCCC--CceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKN--QAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~--~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|++|.|.+..+  ...++-++.|++|++|++..
T Consensus       326 ~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          326 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            45789999986643  35666677899999999853

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=91.56  E-value=0.2  Score=32.85  Aligned_cols=32  Identities=13%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.+.|.+..+...++-++.|++|+||.+.
T Consensus       185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             TCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            45778888887777778888899999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.41  E-value=0.21  Score=31.68  Aligned_cols=34  Identities=3%  Similarity=0.050  Sum_probs=27.2

Q ss_pred             hhhhceeEeeeCC-CCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|++|.|.+.. +...++.++.|++|+||.+..
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~   73 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD   73 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC
Confidence            4679999999875 235677778899999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.35  E-value=0.17  Score=32.20  Aligned_cols=34  Identities=12%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             hhhhhceeEeeeCCC--CceEEeeeCCceeEeEEee
Q psy13888         32 IEEKINKIRWLRRKN--QAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~--~~~~LLstNdktiKLWkv~   65 (70)
                      ..+.|..+.|.+..+  ...++.++.|++|++|.+.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~  103 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI  103 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence            457899999999865  4677778899999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.30  E-value=0.13  Score=34.95  Aligned_cols=33  Identities=9%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      +-+..|+.|.|.+.   ..+|.++.|++|+||.+..
T Consensus        92 ~~~~~V~~~~~s~d---~~~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           92 QTEAGVTDVAWVSE---KGILVASDSGAVELWEILE  124 (357)
T ss_dssp             ECSSCEEEEEEETT---TEEEEEETTSCEEEC----
T ss_pred             CCCCCEEEEEEcCC---CCEEEEECCCEEEEeeccc
Confidence            34456899999875   3688999999999998864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=91.19  E-value=0.17  Score=33.04  Aligned_cols=33  Identities=12%  Similarity=0.388  Sum_probs=26.9

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|+++.|.+......++.++.|++|+||.+..
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            358889998875556788889999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.14  E-value=0.18  Score=32.30  Aligned_cols=34  Identities=12%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|..+.|.+..+...++.++.|++|++|.+...
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            4688999988765678999999999999998654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=91.06  E-value=0.33  Score=32.92  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             eeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         11 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        11 y~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ......|+.|.            ..|+++.|-+.+  ..++-++.|++|+||.+.
T Consensus        56 ~~~~~~l~gH~------------~~V~~~~~sp~~--~~l~s~s~D~~v~iWd~~   96 (380)
T 3iz6_a           56 LVCCRTLQGHS------------GKVYSLDWTPEK--NWIVSASQDGRLIVWNAL   96 (380)
T ss_dssp             CEEEEEECCCS------------SCEEEEEECTTS--SCEEEEETTSEEEEEETT
T ss_pred             eEEeecccccc------------cEEEEEEEcCCC--CEEEEEeCCCeEEEEECC
Confidence            34455666664            469999998743  467777899999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=91.04  E-value=0.16  Score=32.39  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=26.7

Q ss_pred             hhhhceeEeee----CCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLR----RKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~----~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.|.|++    ..+...++.++.|++|++|.+..
T Consensus       111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A          111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            45689999987    35666788888999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.97  E-value=0.63  Score=30.83  Aligned_cols=46  Identities=9%  Similarity=0.040  Sum_probs=31.6

Q ss_pred             ceeeEEEeeeccCcccccccccchhhhhceeEeeeC---C-CCceEEeeeCCceeEeEEeee
Q psy13888          9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR---K-NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus         9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~---~-~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..+.....|+.|.-            .|++|.|...   . +...++-++.|++|+||.+..
T Consensus         9 ~~~~~~~~l~gH~~------------~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~   58 (343)
T 2xzm_R            9 IQVVKRGILEGHSD------------WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE   58 (343)
T ss_dssp             EEEEEEEEEECCSS------------CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECS
T ss_pred             eEeeeeeeeccchh------------hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCc
Confidence            35566778888863            4888888422   2 344555667899999999863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=90.75  E-value=0.25  Score=31.47  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=26.1

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|.+|.|.+.  ...++.++.|++|+||.+..
T Consensus        11 ~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~   42 (342)
T 1yfq_A           11 KDYISDIKIIPS--KSLLLITSWDGSLTVYKFDI   42 (342)
T ss_dssp             SSCEEEEEEEGG--GTEEEEEETTSEEEEEEEET
T ss_pred             CCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCC
Confidence            356999999984  45777888999999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=90.71  E-value=0.26  Score=31.34  Aligned_cols=33  Identities=0%  Similarity=0.099  Sum_probs=27.3

Q ss_pred             hhhhceeEeeeC--CCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRR--KNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~--~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|++|.|.+.  .+...++.++.|++|+||.+.
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~   52 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH   52 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcC
Confidence            468999999985  355678888889999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=90.62  E-value=0.3  Score=30.96  Aligned_cols=32  Identities=6%  Similarity=0.052  Sum_probs=24.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.+.|.+.+  ..++.++.|++|++|.+..
T Consensus       315 ~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          315 FGPLNTVAISPQG--TSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             SSCEEEEEECTTS--SEEEEEETTSEEEEEEECH
T ss_pred             cCcEEEEEECCCC--CEEEEEcCCCeEEEEECcc
Confidence            3458889998743  4666777899999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.45  E-value=0.23  Score=34.26  Aligned_cols=30  Identities=13%  Similarity=0.214  Sum_probs=25.6

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|+++.|.+.+.   ++.++.|++|++|++.
T Consensus       584 ~~~v~~l~~s~~~~---l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          584 KDGVNNLLWETPST---LVSSGADACIKRWNVV  613 (615)
T ss_dssp             TTCEEEEEEEETTE---EEEEETTSCEEEEEEC
T ss_pred             ccceEEEEEcCCCC---eEEecCCceEEEEeee
Confidence            45799999998765   7888899999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=90.29  E-value=0.13  Score=41.03  Aligned_cols=41  Identities=17%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             cccccccccch-----hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         22 PEFDYLKSLEI-----EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        22 ~EFDYLkSleI-----eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      |+|-.++.+..     ...|.+|.|-+.+    ++.++.|++|+||.+..
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCS
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCC
Confidence            44455555421     3489999999755    88999999999999854

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.24  E-value=0.7  Score=30.68  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..+...+++.|.            ..|..+.|-+.  ...++-++.|++|++|.+.
T Consensus        44 ~~~~~~~l~gH~------------~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~   85 (340)
T 1got_B           44 QMRTRRTLRGHL------------AKIYAMHWGTD--SRLLLSASQDGKLIIWDSY   85 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEECTT--SSEEEEEETTTEEEEEETT
T ss_pred             cchhheeecCCC------------CceEEEEECCC--CCEEEEEeCCCcEEEEECC
Confidence            344555666664            47899999653  4567778899999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.07  E-value=0.8  Score=30.40  Aligned_cols=52  Identities=6%  Similarity=0.081  Sum_probs=35.7

Q ss_pred             CcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888          7 KRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus         7 ~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...+++|...|-...++      +.-+..|.++.|-+  +...++..+.|++|+||.+..
T Consensus         8 ~~~~w~~~q~~~~~~~~------~~~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~   59 (447)
T 3dw8_B            8 NDIQWCFSQVKGAVDDD------VAEADIISTVEFNH--SGELLATGDKGGRVVIFQQEQ   59 (447)
T ss_dssp             CCCCCEEEECCSCSSSC------CCGGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC
T ss_pred             cceeEEEEEeccccccc------ccccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecC
Confidence            34466776555443222      34467899999987  445677778999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.06  E-value=0.52  Score=31.08  Aligned_cols=31  Identities=6%  Similarity=0.398  Sum_probs=25.4

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|++|.|.+.++ ..++.++.|++|+||.+.
T Consensus        74 ~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~  104 (383)
T 3ei3_B           74 RRVTSLEWHPTHP-TTVAVGSKGGDIILWDYD  104 (383)
T ss_dssp             SCEEEEEECSSCT-TEEEEEEBTSCEEEEETT
T ss_pred             CCEEEEEECCCCC-CEEEEEcCCCeEEEEeCC
Confidence            6789999988642 577778889999999876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.87  E-value=0.61  Score=31.46  Aligned_cols=31  Identities=6%  Similarity=0.080  Sum_probs=25.9

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .|..+.|.+..+.+.++-++.|++|++|.+.
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            4778888887777788888999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=89.86  E-value=0.46  Score=30.19  Aligned_cols=37  Identities=11%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             cchhhhhceeEeeeCC-CCceEEeeeCCceeEeEEeee
Q psy13888         30 LEIEEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        30 leIeEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e   66 (70)
                      ......|+.+.|.+.. +...++.++.|++|++|.+..
T Consensus       206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            3445678999998854 456788889999999999865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=89.72  E-value=0.64  Score=29.83  Aligned_cols=30  Identities=17%  Similarity=0.293  Sum_probs=23.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.|.|.+.  ...++.++.|++|++|.+.
T Consensus        66 ~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           66 LGISDVAWSSD--SNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             SCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             CceEEEEEcCC--CCEEEEECCCCEEEEEECC
Confidence            35889999774  3567778899999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=89.70  E-value=0.17  Score=34.91  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             ccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         19 SHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        19 SHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .-.|.|...+...-..-|++|+|.+. +...+...+.|++|++|.+..
T Consensus       114 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~  160 (430)
T 2xyi_A          114 SVCGKIEIEIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTK  160 (430)
T ss_dssp             ----CEEEEEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGG
T ss_pred             CCCCceEEEEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCC
Confidence            44556666777777788999999985 234566667899999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=89.52  E-value=0.77  Score=34.77  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..|.|.+..+...++.++.|++|++|.+..
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            468999999887778899999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=89.50  E-value=0.22  Score=34.26  Aligned_cols=32  Identities=3%  Similarity=0.357  Sum_probs=24.3

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      +.+|++|.|-|.. .+.+...+.|++|+||.+.
T Consensus       119 ~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~  150 (435)
T 4e54_B          119 DRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFG  150 (435)
T ss_dssp             SSCEEEEEECSSC-TTCEEEEETTSCEEEECSS
T ss_pred             CCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECC
Confidence            4579999997643 3455566799999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=89.38  E-value=0.35  Score=30.34  Aligned_cols=29  Identities=14%  Similarity=0.350  Sum_probs=22.7

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -|++|.|.+.+  ..++-.+.|++|+||.+.
T Consensus        69 ~V~~v~~~~~~--~~l~sgs~Dg~v~iw~~~   97 (318)
T 4ggc_A           69 YISSVAWIKEG--NYLAVGTSSAEVQLWDVQ   97 (318)
T ss_dssp             CEEEEEECTTS--SEEEEEETTSEEEEEETT
T ss_pred             eEEEEEECCCC--CEEEEEECCCcEEEeecC
Confidence            47888887654  467777899999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=89.21  E-value=0.4  Score=32.51  Aligned_cols=34  Identities=9%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|..+.|.+..+...++.++.|++|++|.+..
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~  236 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  236 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred             CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence            3468889999888888899999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=89.21  E-value=0.43  Score=32.06  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -...|.+|.|.+  +...++.++.|++|+||.+.
T Consensus       110 h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~  141 (437)
T 3gre_A          110 CSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVN  141 (437)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEec
Confidence            356799999986  45578888999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=88.80  E-value=0.33  Score=32.03  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=22.2

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..-++.+.|-+.+   .+|+++.|++|+||++..
T Consensus       352 ~~~~~~~~~s~~g---~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPTG---DVLASGMGFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTTS---SEEEEEETTEEEEEECC-
T ss_pred             CceEEEEEEecCc---cEEEEecCCcEEEEecCC
Confidence            3456666776543   477787899999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=88.77  E-value=0.29  Score=31.98  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=22.5

Q ss_pred             hhhceeEeeeCCCCc--eEEeeeCCceeEeEEe
Q psy13888         34 EKINKIRWLRRKNQA--HFLLSTNDFEFLIFIY   64 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~--~~LLstNdktiKLWkv   64 (70)
                      .-|++|.|++..+..  .++=++.|++|+||++
T Consensus       345 ~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          345 NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            458889988765432  3555668999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=88.72  E-value=0.35  Score=32.99  Aligned_cols=29  Identities=14%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -|++|.|.+.  ...++..+.|++|+||.+.
T Consensus       149 ~V~sv~fspd--g~~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          149 YISSVAWIKE--GNYLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             CEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             cEEEEEECCC--CCEEEEEECCCeEEEEEcC
Confidence            4899999774  4577788999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=88.57  E-value=0.3  Score=31.99  Aligned_cols=39  Identities=15%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             cccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         26 YLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        26 YLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .+..+.-...|+.|.|-+  +...++.++.|++|+||.+..
T Consensus        60 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~vw~~~~   98 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSH--NNKIIAGALDNGSLELYSTNE   98 (416)
T ss_dssp             CSCCCCCSSCEEEEEECS--SSSCEEEEESSSCEEEECCSS
T ss_pred             EEEEEecCCceEEEEECC--CCCeEEEEccCCeEEEeeccc
Confidence            344555678899999955  344666677999999999865

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=88.55  E-value=0.64  Score=30.36  Aligned_cols=41  Identities=12%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             eeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         11 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        11 y~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ++....|+.|.            ..|+.|.|-+.+  ..++-++.|++|+||.+.
T Consensus         3 l~~~~~~~~h~------------~~V~~~~fsp~~--~~l~s~~~dg~v~lWd~~   43 (304)
T 2ynn_A            3 LDIKKTFSNRS------------DRVKGIDFHPTE--PWVLTTLYSGRVELWNYE   43 (304)
T ss_dssp             CCCEEEEEEEC------------SCEEEEEECSSS--SEEEEEETTSEEEEEETT
T ss_pred             ceeEEeecCCC------------CceEEEEECCCC--CEEEEEcCCCcEEEEECC
Confidence            34455666665            358899987653  467777899999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.50  E-value=0.38  Score=32.57  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=24.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|++|.|.+.+  ..++-++.|++|+||.+.
T Consensus       250 ~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          250 GDINSVKFFPDG--QRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             SCCCEEEECTTS--SEEEEECSSSCEEEEETT
T ss_pred             CCeEEEEEecCC--CeEEEEcCCCeEEEEECC
Confidence            468999998743  467777899999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=88.49  E-value=0.43  Score=31.18  Aligned_cols=30  Identities=7%  Similarity=-0.017  Sum_probs=24.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|++|.|-+    ..++.++.|++|++|.+...
T Consensus        17 ~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~   46 (397)
T 1sq9_A           17 ADIFSVSACN----SFTVSCSGDGYLKVWDNKLL   46 (397)
T ss_dssp             SCEEEEEECS----SEEEEEETTSEEEEEESBCC
T ss_pred             cCeEEEEecC----CeEEEEcCCCEEEEEECCCc
Confidence            4689999965    57788889999999998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=88.42  E-value=0.42  Score=35.62  Aligned_cols=32  Identities=3%  Similarity=0.068  Sum_probs=23.9

Q ss_pred             hhceeEeeeCC----CCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRK----NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~----~~~~~LLstNdktiKLWkv~e   66 (70)
                      -|+.|.|.+..    +...+.-++.|++|+||.+..
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~  244 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID  244 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence            48899999973    233444477899999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=88.34  E-value=0.38  Score=29.97  Aligned_cols=29  Identities=14%  Similarity=0.253  Sum_probs=24.3

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .|..+.|.+.+.   ++.++.|++|++|++..
T Consensus       268 ~i~~~~~~~~~~---~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          268 SIWSVDCMSNGD---IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             CEEEEEECTTSC---EEEEETTSCEEEEESCG
T ss_pred             eEEEEEEccCCC---EEEEeCCCcEEEEeCCC
Confidence            588899877654   78899999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=88.19  E-value=0.37  Score=30.66  Aligned_cols=32  Identities=9%  Similarity=-0.055  Sum_probs=26.6

Q ss_pred             hhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      -...|+.|.|.+   ...++.++.|++|++|.+..
T Consensus       100 ~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A          100 ANLGICRICKYG---DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             CCSCEEEEEEET---TTEEEEEETTSEEEEECHHH
T ss_pred             CCCceEEEEeCC---CCEEEEEcCCCeEEEEcccc
Confidence            345789999998   56888899999999998763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=87.68  E-value=0.63  Score=31.40  Aligned_cols=32  Identities=6%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|+.+.|-+.  ...++.++.|++|++|.+...
T Consensus       241 ~~v~~~~~s~~--~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          241 ADVVDMKWSTD--GSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SCEEEEEECTT--SCEEEEEETTCEEEEEESSCC
T ss_pred             CcEEEEEECCC--CCEEEEEECCCEEEEEEccCC
Confidence            46788888664  456777789999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.53  E-value=0.52  Score=32.42  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=24.1

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|++|.|.+. +.+.++-++.|++|+||.+.
T Consensus       164 ~~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          164 GGSITGLKFNPL-NTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             SCCCCEEEECSS-CTTEEEEECSSSCEEEEETT
T ss_pred             CCCEEEEEEeCC-CCCEEEEEeCCCEEEEeecc
Confidence            456999999764 33466667789999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=87.51  E-value=0.56  Score=29.72  Aligned_cols=31  Identities=13%  Similarity=0.033  Sum_probs=24.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|..|.|.+  +...++.++.|++|++|.+.
T Consensus        74 ~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           74 TGTIWSIDVDC--FTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC
Confidence            35688999976  34577788899999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=87.47  E-value=0.88  Score=30.00  Aligned_cols=44  Identities=9%  Similarity=0.120  Sum_probs=31.4

Q ss_pred             eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .+....+|+.|..            -|++|.|-+.. ...++-++.|++|++|.+..
T Consensus         6 ~~~l~~~l~gH~~------------~V~~l~~~~~~-~~~l~s~s~D~~v~~W~~~~   49 (319)
T 3frx_A            6 VLVLRGTLEGHNG------------WVTSLATSAGQ-PNLLLSASRDKTLISWKLTG   49 (319)
T ss_dssp             EEEEEEEECCCSS------------CEEEEEECSSC-TTEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEEEEccccc------------eEEEEEccCCC-ccEEEEecCCccEEEecCCC
Confidence            4556667788863            47788876533 35677778999999998863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.24  E-value=0.69  Score=31.53  Aligned_cols=31  Identities=6%  Similarity=-0.090  Sum_probs=22.9

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++|.|-|.+  ..++=.+.|+||++|.|..
T Consensus       313 ~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          313 FAITEVTISPDS--TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEECTTS--CEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEECCCC--CEEEEEeCCCeEEEEEcCC
Confidence            458899996643  3455567899999999843

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=87.24  E-value=0.45  Score=34.70  Aligned_cols=28  Identities=14%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIY   64 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv   64 (70)
                      .-|+.+.|.+.+.   ++-++.|++||||.+
T Consensus       582 ~~v~~v~fs~d~~---l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          582 SSVNSVIWLNETT---IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             SCEEEEEEEETTE---EEEEETTSCEEEEEC
T ss_pred             cCeeEEEEcCCCE---EEEecCCCCEEEEec
Confidence            5688999987642   666789999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=87.20  E-value=0.89  Score=30.90  Aligned_cols=33  Identities=12%  Similarity=0.204  Sum_probs=23.7

Q ss_pred             hhceeEeeeCC----CCceEEeeeCCceeEeEEeeec
Q psy13888         35 KINKIRWLRRK----NQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        35 KIn~I~Wl~~~----~~~~~LLstNdktiKLWkv~e~   67 (70)
                      .|..+.|.+..    +...++-++.|++|+||++...
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            46777777642    3445566678999999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=87.09  E-value=0.87  Score=31.38  Aligned_cols=33  Identities=3%  Similarity=0.159  Sum_probs=26.2

Q ss_pred             hhh-hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEK-INKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEK-In~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ... |+++.|.+..+...++.++.|++|++|.+.
T Consensus        63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~   96 (615)
T 1pgu_A           63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   96 (615)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence            345 899999884345577777899999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.79  E-value=1.1  Score=30.38  Aligned_cols=30  Identities=10%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.+.|.+.+  ..++.++.|++|++|.+.
T Consensus       166 ~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          166 QDIYSLDYFPSG--DKLVSGSGDRTVRIWDLR  195 (393)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEEcCCC--CEEEEecCCCcEEEEECC
Confidence            357889997654  467778899999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=86.63  E-value=0.63  Score=31.21  Aligned_cols=33  Identities=12%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..-|+.|.|.+. +...++.++.|++|+||.+..
T Consensus        81 ~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           81 TAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             SSCEEEEEECTT-CTTEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccC
Confidence            456899999874 335777778899999999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.09  E-value=0.55  Score=31.02  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=24.6

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..|.|-+..+...++-++.|++|+||.+..
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~  158 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED  158 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence            568899988755556777788999999999753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=85.91  E-value=0.75  Score=29.67  Aligned_cols=33  Identities=12%  Similarity=0.063  Sum_probs=25.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|++|.|.+. +...++.++.|++|++|.+..
T Consensus        43 ~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~   75 (408)
T 4a11_B           43 GGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLEN   75 (408)
T ss_dssp             SSCEEEEEECTT-TCCEEEEEETTSCEEEEECCC
T ss_pred             CCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCC
Confidence            367899999872 234677788999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.88  E-value=0.88  Score=29.68  Aligned_cols=31  Identities=10%  Similarity=0.149  Sum_probs=25.1

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|+.|.|.+.  ...++.++.|++|++|.+.
T Consensus       146 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          146 RSTILSLDWHPN--NVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             CSCEEEEEECTT--SSEEEEEESSSCEEEEEEC
T ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCEEEEEEEE
Confidence            467889999874  3577778899999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=85.76  E-value=1.2  Score=29.42  Aligned_cols=32  Identities=9%  Similarity=0.159  Sum_probs=24.3

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      +..+..+.|-+.  ...++-.+.|++|+||.+..
T Consensus       286 ~~~v~~~~~spd--g~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          286 EPHAVSLAWSAD--GQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CCCEEEEEECTT--SSEEEEEETTSCEEEEEEEE
T ss_pred             CcceeEEEECCC--CCEEEEeecCceEEEEEEee
Confidence            455778888654  44677778999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=85.52  E-value=0.71  Score=30.65  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=24.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.|.|.+.  ...++.++.|++|+||.+.
T Consensus       227 ~~v~~v~~~p~--~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          227 SDINAICFFPN--GNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             SCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEEcCC--CCEEEEEcCCCcEEEEECC
Confidence            35888888764  4578888899999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=85.38  E-value=1  Score=30.97  Aligned_cols=33  Identities=12%  Similarity=0.268  Sum_probs=25.7

Q ss_pred             hhhceeEeeeC-CCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRR-KNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~-~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++|.|.+. .+...++.++.|++|++|.+..
T Consensus       196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            46889999987 3345677778899999999853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=85.36  E-value=0.93  Score=32.32  Aligned_cols=33  Identities=6%  Similarity=0.140  Sum_probs=26.4

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+.|.|-+.. ...++.++.|++|++|.+..
T Consensus       149 ~~~V~~v~~~p~~-~~~las~s~Dg~v~iwD~~~  181 (434)
T 2oit_A          149 GGMVIDMKWNPTV-PSMVAVCLADGSIAVLQVTE  181 (434)
T ss_dssp             GGSEEEEEECSSC-TTEEEEEETTSCEEEEEESS
T ss_pred             CCceEEEEECCCC-CCEEEEEECCCeEEEEEcCC
Confidence            5679999998763 35677788999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=85.32  E-value=0.61  Score=31.83  Aligned_cols=31  Identities=16%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP   68 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p   68 (70)
                      ..|.++.|    +...++.++.|++|++|.+...+
T Consensus       386 ~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          386 GRVFRLQF----DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             SCCCCEEE----CSSCEEECCSSSEEEEEC-----
T ss_pred             CCeEEEEe----CCCEEEEEeCCCEEEEEECCCCC
Confidence            35788888    44567777789999999997654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=84.93  E-value=0.77  Score=30.61  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=23.1

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .|..+.|.+.+  ..++-++.|++|+||.+.
T Consensus       250 ~v~~~~~sp~~--~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          250 WVLNVAFCPDD--THFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             CEEEEEECTTS--SEEEEEETTSCEEEEETT
T ss_pred             ceEEEEECCCC--CEEEEEeCCCcEEEEeCC
Confidence            47888887653  467778899999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=84.82  E-value=0.8  Score=29.60  Aligned_cols=29  Identities=14%  Similarity=0.074  Sum_probs=24.1

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .|+.+.|.+.+.  .++.++.|++|++|.+.
T Consensus       396 ~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          396 YIFDLSWNCAGN--KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEEECTTSS--EEEEEESSSCCEEEECC
T ss_pred             ceEEEEccCCCc--eEEEEecCceEEEEeec
Confidence            689999976654  67788999999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=84.63  E-value=0.88  Score=31.31  Aligned_cols=30  Identities=7%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|.++.|.+.+  ..++-++.|++|++|.+.
T Consensus       193 ~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          193 HNVSSVSIMPNG--DHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             SCEEEEEECSSS--SEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEEeCCC--CEEEEEeCCCeEEEEECC
Confidence            358888888753  467778899999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=84.43  E-value=0.72  Score=31.12  Aligned_cols=31  Identities=13%  Similarity=0.196  Sum_probs=24.9

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|..+.|.+  +...++.+++|++|++|.+..
T Consensus       218 ~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          218 SEVCGLAWRS--DGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSCEEEEETTC
T ss_pred             CCeeEEEEcC--CCCEEEEEeCCCeEEEccCCC
Confidence            4588899987  455788889999999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=84.42  E-value=0.73  Score=31.06  Aligned_cols=30  Identities=13%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.|.|.+.+  ..++.++.|++|+||.+.
T Consensus       241 ~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          241 SDVNSVRYYPSG--DAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEETT
T ss_pred             CCeEEEEEeCCC--CEEEEEeCCCeEEEEECC
Confidence            458889987644  577888899999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=84.22  E-value=1.2  Score=28.78  Aligned_cols=31  Identities=6%  Similarity=0.016  Sum_probs=25.6

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY   64 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv   64 (70)
                      ...|++|.|-+.+. ..++.++.|++|++|.+
T Consensus        45 ~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~   75 (425)
T 1r5m_A           45 LDNIVSSTWNPLDE-SILAYGEKNSVARLARI   75 (425)
T ss_dssp             CSCCSEEEECSSCT-TEEEEEETBTEEEEEEE
T ss_pred             cCceEEEEECCCCC-cEEEEecCCceEEEEEE
Confidence            46799999987654 47777789999999999

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=84.13  E-value=0.79  Score=33.64  Aligned_cols=32  Identities=13%  Similarity=0.123  Sum_probs=25.8

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .|+++.|.+......++-++.|++|++|.+..
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~  550 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN  550 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence            47888888876666777788999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=84.10  E-value=1.2  Score=27.86  Aligned_cols=32  Identities=3%  Similarity=-0.063  Sum_probs=25.2

Q ss_pred             hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -...|+.+.|.+..  ..++.++.|++|++|++.
T Consensus       305 ~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          305 ESSSVLSCDISVDD--KYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CSSCEEEEEECTTS--CEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEECCCC--CEEEEecCCCeEEEEEEe
Confidence            35678888887653  467778899999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=84.00  E-value=0.98  Score=29.82  Aligned_cols=32  Identities=16%  Similarity=0.365  Sum_probs=25.2

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ...|+++.|.+.  ...++.++.|++|++|.+..
T Consensus       139 ~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~  170 (420)
T 3vl1_A          139 VSEITKLKFFPS--GEALISSSQDMQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred             cCccEEEEECCC--CCEEEEEeCCCeEEEEeCCC
Confidence            456899999875  34777788999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=83.83  E-value=1.2  Score=27.83  Aligned_cols=34  Identities=9%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .-...|+.+.|.+.  ...++.++.|++|++|.+..
T Consensus        95 ~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~  128 (337)
T 1gxr_A           95 NRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             CTTSBEEEEEECTT--SSEEEEEESSSEEEEEECCC
T ss_pred             CCCCcEEEEEEcCC--CCEEEEEcCCCcEEEEECCC
Confidence            34567889999874  45777788999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=83.74  E-value=1  Score=29.78  Aligned_cols=30  Identities=7%  Similarity=0.144  Sum_probs=23.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+++.|-+.+  ..++-++.|++|+||.+.
T Consensus       119 ~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R          119 SEVYSVAFSPDN--RQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             SCEEEEEECSST--TEEEEEETTSCEEEEESS
T ss_pred             CcEEEEEECCCC--CEEEEEcCCCEEEEEecc
Confidence            357888887643  467777899999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=83.21  E-value=0.99  Score=30.55  Aligned_cols=29  Identities=3%  Similarity=0.090  Sum_probs=23.1

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|.++.|.+..   .++.++.|++|++|.+.
T Consensus       163 ~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          163 GGVWALKYAHGG---ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             SCEEEEEECSTT---EEEEEETTSCEEEEETT
T ss_pred             cCEEEEEEcCCC---EEEEEeCCCCEEEEECC
Confidence            457888886543   78888999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.09  E-value=1.2  Score=30.36  Aligned_cols=29  Identities=14%  Similarity=0.091  Sum_probs=21.5

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -|+++.|-+  +...+...+.|++|+||.+.
T Consensus       271 ~V~~~~~Sp--dg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          271 GITSMDVDM--KGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             CEEEEEECT--TSCEEEEEETTSCEEEEETT
T ss_pred             CeEeEEECC--CCCceEEEcCCCEEEEEECC
Confidence            367777754  44567777899999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=83.03  E-value=1  Score=30.35  Aligned_cols=31  Identities=6%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|..|.|.+  +...++.++.|++|++|.+.
T Consensus       134 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A          134 STYVASVKWSH--DGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEECC--CCCEEEEECCCCeEEEEECc
Confidence            45689999987  44578888899999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=82.54  E-value=1.2  Score=30.38  Aligned_cols=33  Identities=12%  Similarity=0.268  Sum_probs=22.8

Q ss_pred             hhhceeEeeeCCCCceEEee-eCCceeEeEEeeecC
Q psy13888         34 EKINKIRWLRRKNQAHFLLS-TNDFEFLIFIYSRFP   68 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLs-tNdktiKLWkv~e~p   68 (70)
                      ..|+.+.|-+...  .+|.| +.|++|++|.|...|
T Consensus       300 ~~V~~v~~sp~~~--~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          300 DFVRDATWSPLNH--SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SCEEEEEECSSST--TEEEEEETTSCEEEEECCC--
T ss_pred             CCEEEEEEeCCCC--eEEEEEcCCCeEEEEECCCCC
Confidence            4588999966432  34544 589999999997644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=82.15  E-value=1.2  Score=29.90  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=25.0

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|..|.|.+  +...++.++.|++|++|.+.
T Consensus       176 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          176 PDTIYSVDWSR--DGALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             CSCEEEEEECT--TSSCEEEEETTSEEEEEETT
T ss_pred             CCceEEEEECC--CCCEEEEEecCCcEEEEeCC
Confidence            45688999987  44578888899999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=81.94  E-value=1.7  Score=27.99  Aligned_cols=31  Identities=10%  Similarity=0.157  Sum_probs=24.4

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|+.+.|.+.+  ..++.++.|++|++|.+..
T Consensus       335 ~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          335 KTVDCCVFQSNF--QELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             SCEEEEEEETTT--TEEEEEETTSCEEEEEECC
T ss_pred             CeEEEEEEcCCC--CEEEEECCCCeEEEEeCCC
Confidence            468889998654  4666777899999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=81.88  E-value=1.6  Score=28.55  Aligned_cols=33  Identities=9%  Similarity=0.051  Sum_probs=25.3

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      ..|+.|.|.+.. ...++.++.|++|++|.+...
T Consensus       306 ~~v~~~~~s~~~-~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          306 NWCFKTKFAPEA-PDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SCCCCEEECTTC-TTEEEECCSSSEEEEEESCCC
T ss_pred             CceEEEEECCCC-CCEEEEEecCCcEEEEEccCC
Confidence            458889998754 246777788999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=81.84  E-value=1.3  Score=30.39  Aligned_cols=31  Identities=16%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             hhceeEeeeCCC------------------CceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKN------------------QAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~------------------~~~~LLstNdktiKLWkv~   65 (70)
                      -|++|.|.+...                  ...++-.+.|++|+||.+.
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            467788876532                  3456667789999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=81.57  E-value=1.4  Score=29.07  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|..+.|.+.  ...++.++.|++|++|.+.
T Consensus       181 ~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          181 RATVTDIAIIDR--GRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             SSCEEEEEEETT--TTEEEEEETTSCEEEEETT
T ss_pred             CCcEEEEEEcCC--CCEEEEEcCCCcEEEeECC
Confidence            346889999874  4577788899999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=81.44  E-value=1.2  Score=29.96  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=23.6

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCce-eEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFE-FLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdkt-iKLWkv~   65 (70)
                      ..|++|.|-+  +...++-++.|++ |+||.+.
T Consensus       196 ~~v~~~~~s~--~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          196 NPIKMVRLNR--KSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTCSEEEEEETT
T ss_pred             CceEEEEECC--CCCEEEEEeCCCCEEEEEECC
Confidence            4588999977  3456777789999 9999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.55
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.12
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.09
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.07
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	93.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	93.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	93.76
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.62
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	93.18
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	92.34
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	91.01
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.6
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	90.23
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	89.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.75
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	89.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.3
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	89.29
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.22
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	87.66
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.19
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	85.61
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	84.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	82.68

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0061  Score=35.78  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=24.7

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ++-|++|.|-+.+  ..++-++.|++|+||.+..
T Consensus        11 ~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~   42 (342)
T d1yfqa_          11 KDYISDIKIIPSK--SLLLITSWDGSLTVYKFDI   42 (342)
T ss_dssp             SSCEEEEEEEGGG--TEEEEEETTSEEEEEEEET
T ss_pred             CCCEEEEEEeCCC--CEEEEEECCCeEEEEEccC
Confidence            3569999998754  4566667999999999853

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.029  Score=34.68  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=22.7

Q ss_pred             hhceeEeeeCC----CCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRK----NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~----~~~~~LLstNdktiKLWkv~e   66 (70)
                      .|..+.|+...    +...++-++.|++|+||++.+
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            46777777643    333455558899999999976

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.014  Score=33.94  Aligned_cols=28  Identities=4%  Similarity=0.115  Sum_probs=21.7

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      ..|+++.|-+.+  ..++-++.|++|+||+
T Consensus       290 ~~V~~~~~s~~~--~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTA--PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSS--SCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCC--CEEEEEeCCCeEEEeC
Confidence            468999996543  4566678999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.021  Score=34.41  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=23.8

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY   64 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv   64 (70)
                      ...|+.+.|.+.   ..++-++.|++||||+|
T Consensus       258 ~~~V~~v~~~~~---~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 KDGVNNLLWETP---STLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCEEEEEEEET---TEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCC---CEEEEEECCCeEEEEEE
Confidence            457999999874   25777889999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.07  E-value=0.059  Score=31.99  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ...|++|.|-+.+  ..++-++.|++|++|.+.
T Consensus        55 ~~~I~~l~~s~~~--~~l~sgs~Dg~v~iWd~~   85 (340)
T d1tbga_          55 LAKIYAMHWGTDS--RLLVSASQDGKLIIWDSY   85 (340)
T ss_dssp             SSCEEEEEECTTS--SEEEEEETTTEEEEEETT
T ss_pred             CCCEEEEEECCCC--CEEEEEECCCceeeeecc
Confidence            3469999997643  355556689999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.97  E-value=0.076  Score=33.84  Aligned_cols=30  Identities=7%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      -|++|.|.+.+  +.++.++.|++|+||.+..
T Consensus        53 ~V~~l~fsp~~--~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_          53 QVTGVDWAPDS--NRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CEEEEEEETTT--TEEEEEETTSCEEEEEEET
T ss_pred             CEEEEEECCCC--CEEEEEECCCeEEEEeecc
Confidence            58999998754  4666677999999999863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.017  Score=35.79  Aligned_cols=39  Identities=13%  Similarity=0.196  Sum_probs=29.3

Q ss_pred             cccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         24 FDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        24 FDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ....++++=..-|++|.|-+.+   .+|.|+-|++|+||++.
T Consensus        53 ~~l~~~~~H~~~V~~l~fs~dg---~~lasg~d~~i~iW~~~   91 (388)
T d1erja_          53 VELHKSLDHTSVVCCVKFSNDG---EYLATGCNKTTQVYRVS   91 (388)
T ss_dssp             EEEEEEEECSSCCCEEEECTTS---SEEEEECBSCEEEEETT
T ss_pred             eeeEeeCCCCCcEEEEEECCCC---CEEEEEeCCeEEEEEec
Confidence            3445666667889999996532   46778889999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.76  E-value=0.029  Score=32.52  Aligned_cols=30  Identities=7%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|++|.|-+..  ..++-++.|++|+||.+.
T Consensus        18 ~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~   47 (317)
T d1vyhc1          18 SPVTRVIFHPVF--SVMVSASEDATIKVWDYE   47 (317)
T ss_dssp             SCEEEEEECSSS--SEEEEEESSSCEEEEETT
T ss_pred             CCeEEEEEcCCC--CEEEEEeCCCeEEEEECC
Confidence            468999997643  344444689999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.62  E-value=0.05  Score=34.34  Aligned_cols=33  Identities=3%  Similarity=0.116  Sum_probs=25.8

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++++|-|..+...+.-.+.|++|+||.+..
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            469999998877765544556899999999865

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.037  Score=34.64  Aligned_cols=36  Identities=3%  Similarity=-0.046  Sum_probs=25.4

Q ss_pred             ccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888         27 LKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY   64 (70)
Q Consensus        27 LkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv   64 (70)
                      +..++-...|.++.|.+.  ...++-++.|++|++|+|
T Consensus       300 ~~~~~~~~~v~~~~~s~d--~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 IFQSKESSSVLSCDISVD--DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEECSSCEEEEEECTT--SCEEEEEETTSCEEEEEE
T ss_pred             EEEccCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEEE
Confidence            344455567888888753  345555679999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.34  E-value=0.084  Score=33.63  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=25.6

Q ss_pred             cchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         30 LEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        30 leIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..+|+ |.++.|=  ++...++.+++|++|+||.+.
T Consensus         5 ~~~~p-It~~~~s--~dg~~la~~~~~~~i~iw~~~   37 (371)
T d1k8kc_           5 FLVEP-ISCHAWN--KDRTQIAICPNNHEVHIYEKS   37 (371)
T ss_dssp             SCSSC-CCEEEEC--TTSSEEEEECSSSEEEEEEEE
T ss_pred             CCCCC-eEEEEEC--CCCCEEEEEeCCCEEEEEECC
Confidence            34555 8999884  455677788999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.13  Score=31.99  Aligned_cols=31  Identities=10%  Similarity=0.150  Sum_probs=24.0

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..|++|.|.+.+  ..++.++.|++|+||.+..
T Consensus        98 ~~I~~v~~s~dg--~~l~s~~~dg~i~iwd~~~  128 (337)
T d1gxra_          98 NYIRSCKLLPDG--CTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             SBEEEEEECTTS--SEEEEEESSSEEEEEECCC
T ss_pred             CcEEEEEEcCCC--CEEEEeecccccccccccc
Confidence            458899997643  4666677999999998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.60  E-value=0.28  Score=28.69  Aligned_cols=30  Identities=3%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e   66 (70)
                      .-|++|.|.+   .+.++-++.|++|++|.+..
T Consensus        54 ~~V~~l~~s~---~~~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2          54 GGVWALKYAH---GGILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             SCEEEEEEET---TTEEEEEETTCCEEEEETTT
T ss_pred             CCEEEEEEcC---CCEEEEEecccccccccccc
Confidence            3588999965   24566678999999998653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.23  E-value=0.12  Score=30.91  Aligned_cols=29  Identities=7%  Similarity=-0.039  Sum_probs=21.5

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      -|++|.|-+.  ...++-++.|++|+||.+.
T Consensus        14 ~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~   42 (299)
T d1nr0a2          14 AITALSSSAD--GKTLFSADAEGHINSWDIS   42 (299)
T ss_dssp             CEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred             CcEEEEECCC--CCEEEEEcCCCeEEEEECC
Confidence            4889998664  3445555799999999874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.89  E-value=0.13  Score=29.83  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .|++|.|-+..+  .|+-.+.|++|+||.+.
T Consensus       253 ~v~~l~~sp~~~--~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         253 PVNSIEFSPRHK--FLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CEEEEEECTTTC--CEEEEETTSCEEEEETT
T ss_pred             cceeEEecCCcc--EEEEECCCCEEEEEECC
Confidence            467788876543  56666799999999754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.14  Score=29.18  Aligned_cols=25  Identities=16%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      .|+++.|    +...++-++.|++|+||.
T Consensus       269 ~V~~v~~----d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         269 RVFRLQF----DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCCEEE----CSSCEEECCSSSEEEEEC
T ss_pred             CEEEEEE----cCCEEEEEecCCEEEEeC
Confidence            5778887    334566667899999994

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.55  E-value=0.17  Score=31.99  Aligned_cols=32  Identities=3%  Similarity=-0.198  Sum_probs=24.8

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF   67 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~   67 (70)
                      .-|++++|.+.  .+.++.++.|++|+||.+...
T Consensus        59 ~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          59 HQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             SCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             CCEEEEEEeCC--CCeEeccccCceEeeeeeecc
Confidence            45899999664  456667789999999998653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.30  E-value=0.18  Score=29.77  Aligned_cols=28  Identities=7%  Similarity=-0.019  Sum_probs=20.5

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFI   63 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWk   63 (70)
                      ..|++|.|.+.  ...++-++.|++|+||.
T Consensus       313 ~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDD--GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTT--SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCC--CCEEEEEccCCEEEEeC
Confidence            46899999653  33455567899999994

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.29  E-value=0.16  Score=32.49  Aligned_cols=30  Identities=3%  Similarity=-0.062  Sum_probs=21.9

Q ss_pred             hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      ..|+.|.|-+.  ...++=++.|++||||.+.
T Consensus       290 ~~V~~l~fspd--~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         290 SWVMSLSFNDS--GETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SCEEEEEECSS--SSEEEEEETTSEEEEEETT
T ss_pred             CceeeeccCCC--CCeeEEECCCCEEEEEECC
Confidence            34888888653  3455556689999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.22  E-value=0.12  Score=30.95  Aligned_cols=28  Identities=14%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .|+.+-|.+   ...++-++.|++|+||+|.
T Consensus       271 ~v~~~~~~~---~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         271 SVNSVIWLN---ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CEEEEEEEE---TTEEEEEETTSCEEEEECC
T ss_pred             cEEEEEECC---CCEEEEEeCCCEEEEEecc
Confidence            456666643   3456667789999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.25  Score=28.10  Aligned_cols=20  Identities=10%  Similarity=0.112  Sum_probs=15.2

Q ss_pred             CCceEEeeeCCceeEeEEee
Q psy13888         46 NQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        46 ~~~~~LLstNdktiKLWkv~   65 (70)
                      +...++-++.|++|+||.+.
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~   43 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKN   43 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESS
T ss_pred             cCCEEEEEeCCCeEEEEECC
Confidence            44555556799999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.66  E-value=0.15  Score=29.89  Aligned_cols=29  Identities=17%  Similarity=0.304  Sum_probs=21.8

Q ss_pred             hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      .++.+.+++..+  .+|.++.|++|+||.+.
T Consensus       283 ~~~~~~~~~~~~--~~l~~g~d~~i~vwd~~  311 (355)
T d1nexb2         283 NLSAITTFYVSD--NILVSGSENQFNIYNLR  311 (355)
T ss_dssp             TCCCCCEEEECS--SEEEEEETTEEEEEETT
T ss_pred             CceEEEEEcCCC--CEEEEEeCCEEEEEECC
Confidence            456666666543  58889999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.19  E-value=0.28  Score=30.93  Aligned_cols=31  Identities=10%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888         33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~   65 (70)
                      +..|+++.|.+.  ...++-++.|++|+||.+.
T Consensus       238 ~~~V~~~~~s~~--~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         238 SGSVFGLTWSPD--GTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             SSCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             cccccccccCCC--CCEEEEEeCCCeEEEEECC
Confidence            345889999653  3455556679999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.61  E-value=0.48  Score=28.07  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             hhhhceeEeeeCC--------CCceEEeeeCCceeEeEEeee
Q psy13888         33 EEKINKIRWLRRK--------NQAHFLLSTNDFEFLIFIYSR   66 (70)
Q Consensus        33 eEKIn~I~Wl~~~--------~~~~~LLstNdktiKLWkv~e   66 (70)
                      ..+|++|.|.+..        +...++-.+.|++|++|.+..
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            3578899997753        233444456899999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.73  E-value=0.73  Score=28.67  Aligned_cols=30  Identities=7%  Similarity=0.036  Sum_probs=20.2

Q ss_pred             hceeEeeeC-CCCceEEeeeCCceeEeEEee
Q psy13888         36 INKIRWLRR-KNQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        36 In~I~Wl~~-~~~~~~LLstNdktiKLWkv~   65 (70)
                      +..+.|... .+...++.++.|++|+||.+.
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            344445432 344567777899999999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=0.49  Score=27.44  Aligned_cols=20  Identities=15%  Similarity=0.210  Sum_probs=16.3

Q ss_pred             CCceEEeeeCCceeEeEEee
Q psy13888         46 NQAHFLLSTNDFEFLIFIYS   65 (70)
Q Consensus        46 ~~~~~LLstNdktiKLWkv~   65 (70)
                      +...++.++.|++|++|.+.
T Consensus       269 ~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         269 NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CSSEEEEEETTSEEEEEETT
T ss_pred             CCCeeEEEcCCCEEEEEECC
Confidence            34577788899999999874