Psyllid ID: psy13894

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMGSDLGSDPG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHEEcccccccEEEcccccccccc
Coil and Loop (DISEMBL)
mvvscldnvcgmipfynvdspdqFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGsgiggnlasaifvpyradvscldnvcgmipfynvdspdqFYRLWTSLFlhagarpffTYWITTVQIIILCLSIFayglgpfgfnlahNSGLVVQLeagttkarddgnrtkqdmgsdlgsdpg
Flexible Loop (DISEMBL)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGttkarddgnrtkqdmgsdlgsdpg
Low Complexity Region (SEG)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMGSDLGSDPG
Disordered region (IsUnstruct)
**VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLE**************************
Disordered Region (DISOPRED)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDG****************
Disordered Region (DISEMBL)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGN***************
Disordered Region (DISPRO)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMGSD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMGSDLGSDPG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q6PIX5	856	Inactive rhomboid protein	yes	N/A	0.780	0.174	0.481	1e-35
Q499S9	856	Inactive rhomboid protein	yes	N/A	0.780	0.174	0.475	2e-35
A7YWH9	856	Inactive rhomboid protein	yes	N/A	0.780	0.174	0.469	6e-35
A9L8T6	855	Inactive rhomboid protein	N/A	N/A	0.780	0.174	0.456	1e-34
Q96CC6	855	Inactive rhomboid protein	yes	N/A	0.780	0.174	0.456	1e-34
B1MT31	855	Inactive rhomboid protein	N/A	N/A	0.780	0.174	0.456	1e-34
B0VX73	855	Inactive rhomboid protein	yes	N/A	0.780	0.174	0.456	1e-34
Q6GMF8	857	Inactive rhomboid protein	no	N/A	0.764	0.170	0.465	3e-34
Q00M95	827	Inactive rhomboid protein	no	N/A	0.780	0.180	0.462	8e-33
Q6PJF5	856	Inactive rhomboid protein	no	N/A	0.780	0.174	0.462	9e-33

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score =  149 bits (376), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score =  147 bits (370), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +F +GL P+  N AH SG +  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 781

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +F +GL P+  N AH SG +  L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +F +GL P+  N AH SG +  L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +F +GL P+  N AH SG +  L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +F +GL P+  N AH SG +  L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 13/159 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 634 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLR 693

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           I+IIY  SGI GNLASAIF+PYRA+V    +  G++    V    +  + W  L     A
Sbjct: 694 ISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELIQSWQIL-----A 744

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
           +P    W    +++ + L +FA+GL P+  N AH SG +
Sbjct: 745 QP----WRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFI 779

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V CLD VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV+ Q  ++RDLEKL G  R
Sbjct: 604 VHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHR 663

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAII+  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L      
Sbjct: 664 IAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFV----ELFQSWQLL-----E 714

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W   + +  + L +F  GL P+  N+AH  G +  L
Sbjct: 715 RP----WKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGL 752

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2

 Score =  139 bits (351), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V CLD VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV+ Q  ++RDLEKL G  R
Sbjct: 633 VHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAII+  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L      
Sbjct: 693 IAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFV----ELFQSWPLL-----E 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W   + +  + L +F  GL P+  N+AH  G +  L
Sbjct: 744 RP----WKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGL 781

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
270012402	1455	hypothetical protein TcasGA2_TC006551 [T	0.764	0.100	0.490	2e-35
91089053	1486	PREDICTED: similar to rhomboid [Triboliu	0.764	0.098	0.490	2e-35
226437617	856	inactive rhomboid protein 1 [Mus musculu	0.780	0.174	0.481	6e-34
226822866	856	rhomboid family 1 (predicted) [Dasypus n	0.780	0.174	0.469	7e-34
20071092	856	Rhomboid family 1 (Drosophila) [Mus musc	0.780	0.174	0.475	9e-34
148691816	856	rhomboid family 1 (Drosophila) [Mus musc	0.780	0.174	0.475	9e-34
71795631	856	inactive rhomboid protein 1 [Rattus norv	0.780	0.174	0.475	9e-34
335284752	855	PREDICTED: inactive rhomboid protein 1-l	0.780	0.174	0.475	9e-34
19483909	621	Rhbdf1 protein, partial [Mus musculus]	0.780	0.239	0.481	1e-33
354499596	856	PREDICTED: inactive rhomboid protein 1-l	0.780	0.174	0.469	1e-33

>gi|270012402|gb|EFA08850.1| hypothetical protein TcasGA2_TC006551 [Tribolium castaneum]

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 103/159 (64%), Gaps = 13/159 (8%)

Query: 3    VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
            VSCL++VCGM+PFY  ++PDQFYRLWTSLFLHAGV+ L ++V++Q+ LMRDLEKLTGS R
Sbjct: 1227 VSCLNDVCGMLPFYFAETPDQFYRLWTSLFLHAGVLQLAVTVLIQYFLMRDLEKLTGSLR 1286

Query: 63   IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
            I IIY GSG+ GNLASAIFVPYRADV    +  G++    V+  + +      +  H   
Sbjct: 1287 IGIIYIGSGVAGNLASAIFVPYRADVGPAGSQFGLLACLIVEVLNSW-----PMLKHPNQ 1341

Query: 123  RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
                       +++ + L +F  GL P+  N AH  G V
Sbjct: 1342 --------ALCKLLSITLVLFLIGLLPWVDNYAHLFGFV 1372

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089053|ref|XP_970266.1| PREDICTED: similar to rhomboid [Tribolium castaneum]

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 103/159 (64%), Gaps = 13/159 (8%)

Query: 3    VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
            VSCL++VCGM+PFY  ++PDQFYRLWTSLFLHAGV+ L ++V++Q+ LMRDLEKLTGS R
Sbjct: 1258 VSCLNDVCGMLPFYFAETPDQFYRLWTSLFLHAGVLQLAVTVLIQYFLMRDLEKLTGSLR 1317

Query: 63   IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
            I IIY GSG+ GNLASAIFVPYRADV    +  G++    V+  + +      +  H   
Sbjct: 1318 IGIIYIGSGVAGNLASAIFVPYRADVGPAGSQFGLLACLIVEVLNSW-----PMLKHPNQ 1372

Query: 123  RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
                       +++ + L +F  GL P+  N AH  G V
Sbjct: 1373 --------ALCKLLSITLVLFLIGLLPWVDNYAHLFGFV 1403

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226437617|ref|NP_034247.2| inactive rhomboid protein 1 [Mus musculus] gi|190360227|sp|Q6PIX5.2|RHDF1_MOUSE RecName: Full=Inactive rhomboid protein 1; Short=iRhom1; AltName: Full=Epidermal growth factor receptor-related protein; AltName: Full=Rhomboid family member 1

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226822866|gb|ACO83098.1| rhomboid family 1 (predicted) [Dasypus novemcinctus]

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTILRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           I+IIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 ISIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQVL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + LS+F +GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLSLFTFGLLPWIDNFAHISGFVSGL 781

Source: Dasypus novemcinctus

Species: Dasypus novemcinctus

Genus: Dasypus

Family: Dasypodidae

Order: Cingulata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|20071092|gb|AAH27346.1| Rhomboid family 1 (Drosophila) [Mus musculus]

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148691816|gb|EDL23763.1| rhomboid family 1 (Drosophila) [Mus musculus]

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|71795631|ref|NP_001025205.1| inactive rhomboid protein 1 [Rattus norvegicus] gi|123781648|sp|Q499S9.1|RHDF1_RAT RecName: Full=Inactive rhomboid protein 1; Short=iRhom1; AltName: Full=Rhomboid family member 1 gi|71121786|gb|AAH99777.1| Rhomboid 5 homolog 1 (Drosophila) [Rattus norvegicus] gi|149052201|gb|EDM04018.1| rhomboid family 1 (Drosophila) [Rattus norvegicus]

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|335284752|ref|XP_003124711.2| PREDICTED: inactive rhomboid protein 1-like [Sus scrofa]

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 691

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 743 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 780

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|19483909|gb|AAH23469.1| Rhbdf1 protein, partial [Mus musculus]

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 398 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 457

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 458 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 508

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG V  L
Sbjct: 509 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 546

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354499596|ref|XP_003511894.1| PREDICTED: inactive rhomboid protein 1-like [Cricetulus griseus] gi|344254275|gb|EGW10379.1| Rhomboid family member 1 [Cricetulus griseus]

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 104/162 (64%), Gaps = 13/162 (8%)

Query: 3   VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
           V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query: 63  IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
           IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V    + ++ W  L     A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743

Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
           RP    W    +++ + L +FA+GL P+  N AH SG +  L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFISGL 781

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
MGI|MGI:104328	856	Rhbdf1 "rhomboid family 1 (Dro	0.764	0.170	0.484	2e-31
UNIPROTKB|K7GRW6	774	LOC100517883 "Uncharacterized	0.764	0.188	0.477	2e-31
RGD|1305075	856	Rhbdf1 "rhomboid 5 homolog 1 (	0.764	0.170	0.477	2.6e-31
UNIPROTKB|F1RGZ3	862	LOC100517883 "Uncharacterized	0.764	0.169	0.477	2.6e-31
UNIPROTKB|E1C4R0	769	E1C4R0 "Uncharacterized protei	0.764	0.189	0.471	3.2e-31
UNIPROTKB|E1BW31	772	E1BW31 "Uncharacterized protei	0.764	0.189	0.471	3.3e-31
UNIPROTKB|A7YWH9	856	RHBDF1 "Inactive rhomboid prot	0.764	0.170	0.471	6.9e-31
UNIPROTKB|Q96CC6	855	RHBDF1 "Inactive rhomboid prot	0.764	0.170	0.459	1.1e-30
UNIPROTKB|A9L8T6	855	RHBDF1 "Inactive rhomboid prot	0.764	0.170	0.459	1.1e-30
UNIPROTKB|B0VX73	855	RHBDF1 "Inactive rhomboid prot	0.764	0.170	0.459	1.1e-30

MGI|MGI:104328 Rhbdf1 "rhomboid family 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/159 (48%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SGI GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 743

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG V
Sbjct:   744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFV 778

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008283 "cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=ISO

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISO

GO:0050708 "regulation of protein secretion" evidence=ISO

GO:0050709 "negative regulation of protein secretion" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

UNIPROTKB|K7GRW6 LOC100517883 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   551 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 610

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   611 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 661

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG V
Sbjct:   662 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFV 696

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

RGD|1305075 Rhbdf1 "rhomboid 5 homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 743

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG V
Sbjct:   744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFV 778

GO:0000139 "Golgi membrane" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008283 "cell proliferation" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=ISO;ISS

GO:0019838 "growth factor binding" evidence=IEA

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISO;ISS

GO:0050708 "regulation of protein secretion" evidence=ISO

GO:0050709 "negative regulation of protein secretion" evidence=ISO;ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO;ISS

UNIPROTKB|F1RGZ3 LOC100517883 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   639 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 698

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   699 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 749

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG V
Sbjct:   750 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFV 784

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1C4R0 E1C4R0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.2e-31, P = 3.2e-31
 Identities = 75/159 (47%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   546 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWHR 605

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             I+IIY  SGI GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   606 ISIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 656

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG +
Sbjct:   657 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFI 691

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BW31 E1BW31 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 75/159 (47%), Positives = 103/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV  Q  ++RDLEKL G  R
Sbjct:   549 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWHR 608

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             I+IIY  SGI GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   609 ISIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 659

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +FA+GL P+  N AH SG +
Sbjct:   660 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFI 694

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0050709 "negative regulation of protein secretion" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

UNIPROTKB|A7YWH9 RHBDF1 "Inactive rhomboid protein 1" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 75/159 (47%), Positives = 102/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV  Q  ++RDLEKL G  R
Sbjct:   633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHR 692

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 743

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +F +GL P+  N AH SG +
Sbjct:   744 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFI 778

GO:0016477 "cell migration" evidence=ISS

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

GO:0050709 "negative regulation of protein secretion" evidence=ISS

GO:0019838 "growth factor binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q96CC6 RHBDF1 "Inactive rhomboid protein 1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct:   632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 742

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +F +GL P+  N AH SG +
Sbjct:   743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFI 777

GO:0006508 "proteolysis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019838 "growth factor binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IDA

GO:0050709 "negative regulation of protein secretion" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0050708 "regulation of protein secretion" evidence=IMP

UNIPROTKB|A9L8T6 RHBDF1 "Inactive rhomboid protein 1" [Papio anubis (taxid:9555)]

 Score = 348 (127.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct:   632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 742

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +F +GL P+  N AH SG +
Sbjct:   743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFI 777

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISS

GO:0050709 "negative regulation of protein secretion" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

UNIPROTKB|B0VX73 RHBDF1 "Inactive rhomboid protein 1" [Callithrix jacchus (taxid:9483)]

 Score = 348 (127.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query:     3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
             V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+  Q  ++RDLEKL G  R
Sbjct:   632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691

Query:    63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
             IAIIY  SG+ GNLASAIF+PYRA+V    +  G++    V+     ++ W  L     A
Sbjct:   692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVE----LFQSWQIL-----A 742

Query:   123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
             RP    W    +++ + L +F +GL P+  N AH SG +
Sbjct:   743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFI 777

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISS

GO:0050709 "negative regulation of protein secretion" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q76NQ1	RHDF1_DROME	No assigned EC number	0.5208	0.5026	0.0671	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	5e-16
COG0705	228	COG0705, COG0705, Membrane associated serine prote	3e-08
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	8e-06

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 71.1 bits (175), Expect = 5e-16
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)

Query: 18  VDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLA 77
           +    Q +RL TS+FLHAG +HL+ +++        LE++ GS R  ++Y  SG+ G+L 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 78  SAIFVPYRADV---SCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQ 134
           S +F P  +     S    + G++    V  P                   F +    + 
Sbjct: 61  SYLFSPASSPSVGASGA--IFGLLGALLVLLPRNR-------------ILLFNFPGALLL 105

Query: 135 IIILCLSIFAYGLGPFGFNLAHNSGLVV 162
           ++ + L     G  P   N AH  GL+ 
Sbjct: 106 LLGIILLNLLLGFLPGISNFAHLGGLIA 133

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 22  DQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF 81
           DQ +RL T++FLHAG +HL+ +++  ++   +LE+  G+ R  + Y  SG+   LA  +F
Sbjct: 66  DQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLF 125

Query: 82  VPY 84
            P 
Sbjct: 126 GPK 128

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 23  QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNL--ASAI 80
           + +RL   +FLHA + H   +V  Q  +   LEK  G  +I I+YF +GI GN+  +S  
Sbjct: 101 EIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVT 160

Query: 81  FVPYRADVS 89
           + P +   S
Sbjct: 161 YCPIKVGAS 169

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PTZ00101	278	rhomboid-1 protease; Provisional	99.97
KOG2289|consensus	316		99.95
KOG2290|consensus	652		99.94
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.94
COG0705	228	Membrane associated serine protease [Amino acid tr	99.93
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.91
KOG2632|consensus	258		99.74
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.54
KOG2980|consensus	310		98.36
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.24
KOG2890|consensus	326		98.02
KOG0858|consensus	239		97.6
COG5291	313	Predicted membrane protein [Function unknown]	95.66
KOG4463|consensus	323		95.15

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.97  E-value=2.7e-30  Score=213.67  Aligned_cols=155  Identities=23%  Similarity=0.316  Sum_probs=122.7

Q ss_pred             cccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCce
Q psy13894          8 NVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRAD   87 (191)
Q Consensus         8 ~~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~   87 (191)
                      +.+++.|...  .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|+++|+.|++++..+.+....
T Consensus        88 ~~Ga~~~~~i--~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~s  165 (278)
T PTZ00101         88 TLGANVASRI--KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIK  165 (278)
T ss_pred             HHhCcchhhh--hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcE
Confidence            3445556433  47999999999999999999999999999999999999999999999999999999999998887789


Q ss_pred             echhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHH--HHHhc-cCchhhHHHHHHHHHHHH
Q psy13894         88 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLS--IFAYG-LGPFGFNLAHNSGLVVQL  164 (191)
Q Consensus        88 vGaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~i~~~aHl~G~l~G~  164 (191)
                      +||||++||++|+++..    ....|...+     .+.+ .   +..+......  .+... ..|++|+.||++|+++|+
T Consensus       166 vGASgAifGLiGa~~~~----lil~w~~~~-----~~~~-~---~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~  232 (278)
T PTZ00101        166 VGASTSGMGLLGIVTSE----LILLWHVIR-----HRER-V---VFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGI  232 (278)
T ss_pred             EehhHHHHHHHHHHHHH----HHHHHHhhc-----cHHH-H---HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            99999999999999887    677776655     3322 1   1111111111  11122 258899999999999999


Q ss_pred             HHhhhhcCCCccc
Q psy13894        165 EAGTTKARDDGNR  177 (191)
Q Consensus       165 l~g~~~~~~~~~~  177 (191)
                      ++|..+.++.+++
T Consensus       233 llg~~~~~~l~~~  245 (278)
T PTZ00101        233 SMGILYNSQMENK  245 (278)
T ss_pred             HHHHHHHhhhhhc
Confidence            9999987764433

>KOG2289|consensus

Probab=99.95  E-value=1.4e-28  Score=205.28  Aligned_cols=143  Identities=26%  Similarity=0.478  Sum_probs=130.0

Q ss_pred             CCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCceechhHHHHH
Q psy13894         17 NVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCG   96 (191)
Q Consensus        17 ~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~vGaSg~v~g   96 (191)
                      .+..++|+||++||+++|+|+.|+..||+.+.++|..+|..+|.+|+..+|++++++|++++++++++...|||||++||
T Consensus       112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfa  191 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFA  191 (316)
T ss_pred             ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhhcC
Q psy13894         97 MIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKAR  172 (191)
Q Consensus        97 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~~~  172 (191)
                      |+|+.+..    ..+||..++     .+..    .+..++.++...+.+|+.|.+++++|++|++.|..++++...
T Consensus       192 LlgA~Ls~----l~~Nw~~m~-----~~~~----~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~  254 (316)
T KOG2289|consen  192 LLGAHLSN----LLTNWTIMK-----NKFA----ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHI  254 (316)
T ss_pred             HHHHHHHH----HHhhHHHhc-----chHH----HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhh
Confidence            99999999    999999988     6655    455556556667778889999999999999999999988644

>KOG2290|consensus

Probab=99.94  E-value=9.1e-28  Score=205.07  Aligned_cols=158  Identities=49%  Similarity=0.803  Sum_probs=145.4

Q ss_pred             ccceeccccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q psy13894          2 VVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF   81 (191)
Q Consensus         2 ~~~~l~~~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~   81 (191)
                      ||+|+++.||++|+.++.++.|+||++||.|+|+|+.|++..+..++.+.+.+|+..|+.|..++|++||+.||+++.++
T Consensus       429 QVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIF  508 (652)
T KOG2290|consen  429 QVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIF  508 (652)
T ss_pred             hhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCceechhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Q psy13894         82 VPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV  161 (191)
Q Consensus        82 ~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l  161 (191)
                      .|..+.||.||+-+|++++.++.    ....|+.+.     +|.+    ++..++..++. +..|+.|.+|+++|+.|++
T Consensus       509 lpY~~eVgPa~sQ~Gila~l~vE----l~qs~~il~-----~~w~----a~~~Lia~~L~-L~iGliPWiDN~aHlfG~i  574 (652)
T KOG2290|consen  509 LPYRAEVGPAGSQFGILACLFVE----LFQSWQILE-----RPWR----AFFHLIATLLV-LCIGLIPWIDNWAHLFGTI  574 (652)
T ss_pred             eccccccCCcccccchHHHHHHH----HHhhhHhhh-----hHHH----HHHHHHHHHHH-HHhccccchhhHHHHHHHH
Confidence            99999999999999999999999    899999888     6554    55555554444 4449999999999999999


Q ss_pred             HHHHHhhhhcCC
Q psy13894        162 VQLEAGTTKARD  173 (191)
Q Consensus       162 ~G~l~g~~~~~~  173 (191)
                      .|++..+++.+.
T Consensus       575 ~GLl~s~~~~PY  586 (652)
T KOG2290|consen  575 FGLLTSIIFLPY  586 (652)
T ss_pred             HHHHHHHHhhcc
Confidence            999999998886

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.94  E-value=3.6e-26  Score=189.30  Aligned_cols=144  Identities=17%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             CCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCceechhHHHHHHHH
Q psy13894         20 SPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIP   99 (191)
Q Consensus        20 ~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~vGaSg~v~gl~~   99 (191)
                      .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+++++.|++.+.++.+ ...+|+||++||++|
T Consensus       131 ~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g  209 (276)
T PRK10907        131 LKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMG  209 (276)
T ss_pred             ccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999888764 468899999999999


Q ss_pred             HHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhhcCCCcc
Q psy13894        100 FYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGN  176 (191)
Q Consensus       100 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~~~~~~~  176 (191)
                      +.....    .+ .+...   ...|.. +   +..++++....+...+.+++++.||++|+++|+++|+...+++++
T Consensus       210 ~~~~~~----~~-~p~~~---~~lp~~-~---~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~~~~  274 (276)
T PRK10907        210 YVWLRG----ER-DPQSG---IYLPRG-L---IAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTRNARK  274 (276)
T ss_pred             HHHHHh----cc-ccccc---hhhhHH-H---HHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            765541    11 00000   001111 1   112222222222222357899999999999999999988765443

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.93  E-value=3e-25  Score=179.55  Aligned_cols=157  Identities=28%  Similarity=0.414  Sum_probs=122.2

Q ss_pred             cccccccCCCCCC--CchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCC--
Q psy13894         10 CGMIPFYNVDSPD--QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYR--   85 (191)
Q Consensus        10 ~gl~p~~~~~~~~--q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~--   85 (191)
                      .++.|........  |+||++|++|+|.|+.|+++||+.++.+|..+|+..|+.+++.+|+++|+.+++.+..+.|..  
T Consensus        52 ~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~  131 (228)
T COG0705          52 FGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGA  131 (228)
T ss_pred             HhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccC
Confidence            4555643322222  899999999999999999999999999999999999999999999999999999999998765  


Q ss_pred             ceechhHHHHHHHHHHhhhCcchhHHHHHH-hhhhcCCCchhhHHHHHHHHHHHHHHHHHhcc---CchhhHHHHHHHHH
Q psy13894         86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTS-LFLHAGARPFFTYWITTVQIIILCLSIFAYGL---GPFGFNLAHNSGLV  161 (191)
Q Consensus        86 ~~vGaSg~v~gl~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~i~~~aHl~G~l  161 (191)
                      +.+||||+++|++++++...|......... .+     ++.      ...+.......++.+.   .+++++.+|++|++
T Consensus       132 ~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~-----~~~------~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i  200 (228)
T COG0705         132 PSLGASGAIFGLLGAYFLLFPFARILLLFLSLP-----RPA------LILILIWLLYSLFSGAGSFGPSVAWSAHLGGLI  200 (228)
T ss_pred             cccchhHHHHHHHHHHHHHccccchhhhhccCc-----hhH------HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            799999999999999999988764443322 22     121      1223333333333333   23799999999999


Q ss_pred             HHHHHhhhhcCCCccc
Q psy13894        162 VQLEAGTTKARDDGNR  177 (191)
Q Consensus       162 ~G~l~g~~~~~~~~~~  177 (191)
                      .|.+++....++.++|
T Consensus       201 ~G~l~~~~~~~~~~~~  216 (228)
T COG0705         201 GGLLLAALLSRKLRKR  216 (228)
T ss_pred             HHHHHHHHHhhhhhhh
Confidence            9999999988875544

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.91  E-value=3e-25  Score=166.87  Aligned_cols=142  Identities=28%  Similarity=0.382  Sum_probs=104.3

Q ss_pred             CCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCC-ceechhHHHHHHH
Q psy13894         20 SPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYR-ADVSCLDNVCGMI   98 (191)
Q Consensus        20 ~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~-~~vGaSg~v~gl~   98 (191)
                      +++|+||++|++|+|.|+.|++.|++.++.+|..+|+.+|++++..+|+.+++.+++...++.+.. ..+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            478999999999999999999999999999999999999999999999999999999999988766 8999999999999


Q ss_pred             HHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhhcCCC
Q psy13894         99 PFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDD  174 (191)
Q Consensus        99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~~~~~  174 (191)
                      ++.+...|+..........      ...       .........+..+..+++++.+|++|+++|++++..++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYL------ALV-------VPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HC------CCC-------CCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchH------HHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9998885543111110000      000       00001112233344789999999999999999999988753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632|consensus

Probab=99.74  E-value=2.5e-17  Score=133.22  Aligned_cols=138  Identities=20%  Similarity=0.214  Sum_probs=109.2

Q ss_pred             CCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHhc---------CCcee
Q psy13894         19 DSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTG-SFRIAIIYFGSGIGGNLASAIFVP---------YRADV   88 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G-~~~~~~lyl~s~i~g~l~~~l~~~---------~~~~v   88 (191)
                      ..+.|.||++||+++|.+..|+++||++++.+|..+|+.+| +.+++....+.++..+++.+++..         +...+
T Consensus        48 l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~  127 (258)
T KOG2632|consen   48 LINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAI  127 (258)
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccc
Confidence            46899999999999999999999999999999999999999 899999999999999998877642         13579


Q ss_pred             chhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhh
Q psy13894         89 SCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGT  168 (191)
Q Consensus        89 GaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~  168 (191)
                      |.|+..|++++...+..|......+..+.     .|.+        +..+..+..+.-+.|+.|+.+|++|+++|+.+++
T Consensus       128 G~s~v~Fam~~~~~~~sp~r~~~~fg~~s-----iP~~--------l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  128 GFSGVLFAMMAVLEVQSPVRSRSVFGLFS-----IPIV--------LAPWALLIATQILVPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             cccHHHHHHHHHHhhcCcccchhhccccc-----ccHH--------HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence            99999999999988887765433333333     3433        1111122222223699999999999999999999


Q ss_pred             h
Q psy13894        169 T  169 (191)
Q Consensus       169 ~  169 (191)
                      .
T Consensus       195 ~  195 (258)
T KOG2632|consen  195 S  195 (258)
T ss_pred             H
Confidence            3

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.54  E-value=2.9e-07  Score=65.34  Aligned_cols=59  Identities=24%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q psy13894         23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF   81 (191)
Q Consensus        23 q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~   81 (191)
                      ++||++|+.|++.++..++.|.+.++..|+.+|+.+|++.++....+..+++|+...+.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~   65 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL   65 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999988877554

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2980|consensus

Probab=98.36  E-value=2.4e-08  Score=82.70  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             CchhhhhhhhcccCHHHHHHHHHHHHHHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHH-hc---CCceechhHHHHHH
Q psy13894         23 QFYRLWTSLFLHAGVIHLVISVIVQFILMR-DLEKLTGSFRIAIIYFGSGIGGNLASAIF-VP---YRADVSCLDNVCGM   97 (191)
Q Consensus        23 q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~-~lE~~~G~~~~~~lyl~s~i~g~l~~~l~-~~---~~~~vGaSg~v~gl   97 (191)
                      --|.+++|.|.|.+..|+-.||+.+..+.. .+....|...+..+|+.++..|..+...- .+   ..+..||||+++++
T Consensus       154 ~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai  233 (310)
T KOG2980|consen  154 GCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAI  233 (310)
T ss_pred             cceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHH
Confidence            346699999999999999999999888887 77888999999999995555555443221 12   34679999999999


Q ss_pred             HHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhhcCC
Q psy13894         98 IPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARD  173 (191)
Q Consensus        98 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~~~~  173 (191)
                      .++....+|+.........+     .+.- .+..+-.+....+..+.++. -..++.+|++|-+.|..++...-+.
T Consensus       234 ~a~~~~lfP~~~~~i~f~~~-----v~~g-a~~~~~~i~~~~~a~~~l~~-~~~n~~Ah~~gsl~Gv~va~~~~~r  302 (310)
T KOG2980|consen  234 LALDCTLFPKTTLYILFVFP-----VPAG-AGLAFKAIAAYDFAGLILGW-GFFNHAAHLSGSLFGVVVATYLWAR  302 (310)
T ss_pred             HHHHhhcCcCcceeEEEeec-----cccc-chhHHHHHHHhhhcceeecc-ccchhHhhhcchHHHHHHHHHHHHH
Confidence            99999999976554433334     2221 11111111111111222222 2456679999999999999887443

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.24  E-value=5.9e-06  Score=65.58  Aligned_cols=137  Identities=11%  Similarity=0.086  Sum_probs=84.2

Q ss_pred             CCCCCchhhhhhhhccc-CHHHHHHHHHHHHHHHHHHHHH-hCh--hHHHHHHHHHHHHHHHHHHHHhcC--CceechhH
Q psy13894         19 DSPDQFYRLWTSLFLHA-GVIHLVISVIVQFILMRDLEKL-TGS--FRIAIIYFGSGIGGNLASAIFVPY--RADVSCLD   92 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~-~~~Hl~~N~~~l~~~g~~lE~~-~G~--~~~~~lyl~s~i~g~l~~~l~~~~--~~~vGaSg   92 (191)
                      .++.|+||++|+.|.-. .-.+.++|++.++..++.+|+. +..  ..++...+.++..-.+++.+..+.  +...-.+.
T Consensus        37 ~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~  116 (197)
T PF04511_consen   37 FKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSS  116 (197)
T ss_pred             hhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            35789999999999864 4479999999999999999998 332  467666565555555555443321  11222344


Q ss_pred             HHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhh
Q psy13894         93 NVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTT  169 (191)
Q Consensus        93 ~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~  169 (191)
                      -...+.=.+.-..|++.+..+...+     .+.+  |+  ..+.. ....+ .   .+.+...++-|+++|-++-+.
T Consensus       117 l~~~l~Y~wsr~np~~~v~~~g~~~-----i~a~--yl--P~~~~-~~~~l-~---~~~~~~~~l~Gi~~Ghly~fl  179 (197)
T PF04511_consen  117 LSFALTYIWSRKNPNAQVSFFGLFT-----IKAK--YL--PWVLL-AFSLL-F---GGSSPIPDLLGILVGHLYYFL  179 (197)
T ss_pred             HHHHHHHHHHHhCcccceeeEEEEE-----EChh--hH--HHHHH-HHHHH-h---CCCcHHHHHHHHHHHHHHHHH
Confidence            5555555666666766665544333     2322  22  11111 11111 1   223566999999999998877

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2890|consensus

Probab=98.02  E-value=2.9e-05  Score=64.59  Aligned_cols=141  Identities=14%  Similarity=0.019  Sum_probs=96.2

Q ss_pred             CCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH-------hcC-----Cceec
Q psy13894         22 DQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF-------VPY-----RADVS   89 (191)
Q Consensus        22 ~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~-------~~~-----~~~vG   89 (191)
                      -..|+++|+.|+-.+++-.+.|.+.+.+-|..+|+.+|+..++..|.+.-...+++....       ..+     .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            379999999999999999999999999999999999999999988877655544433221       111     25679


Q ss_pred             hhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhh
Q psy13894         90 CLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTT  169 (191)
Q Consensus        90 aSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~  169 (191)
                      ..|...|++.++=-..||..+..-+.-+...+.-|.       ..++...++.+     -.....+.+..+..|...+|.
T Consensus       145 ~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~-------~~l~~~~il~i-----~~f~~f~~l~s~~~g~~~sWt  212 (326)
T KOG2890|consen  145 TTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPL-------LVLFLSLILSI-----ITFLVFASLPSITFGVLVSWT  212 (326)
T ss_pred             chHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCH-------HHHHHHHHHHH-----HHHHHhhhhHHHHHhhhhhhh
Confidence            999999999999888898855443222211111121       12222222222     123446666777778888888


Q ss_pred             hcCCC
Q psy13894        170 KARDD  174 (191)
Q Consensus       170 ~~~~~  174 (191)
                      +.|.-
T Consensus       213 YLRfy  217 (326)
T KOG2890|consen  213 YLRFY  217 (326)
T ss_pred             hheec
Confidence            77753

>KOG0858|consensus

Probab=97.60  E-value=0.00019  Score=58.02  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             CCCCCchhhhhhhhcccC-HHHHHHHHHHHHHHHHHHHHHh---ChhHHHHHHHHHHHHHHHHHH
Q psy13894         19 DSPDQFYRLWTSLFLHAG-VIHLVISVIVQFILMRDLEKLT---GSFRIAIIYFGSGIGGNLASA   79 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~~-~~Hl~~N~~~l~~~g~~lE~~~---G~~~~~~lyl~s~i~g~l~~~   79 (191)
                      .++.|+||++|+.+.-.. -.|.++||+.++--.+.+|+-.   .+.+|+.+.+.+++.-.+.+.
T Consensus        48 ~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   48 FKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            568999999999999866 7999999999999999999943   347888888888887776554

>COG5291 Predicted membrane protein [Function unknown]

Probab=95.66  E-value=0.0047  Score=50.34  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             CCCCCchhhhhhhhccc-CHHHHHHHHHHHHHHHHHHHH-HhChh
Q psy13894         19 DSPDQFYRLWTSLFLHA-GVIHLVISVIVQFILMRDLEK-LTGSF   61 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~-~~~Hl~~N~~~l~~~g~~lE~-~~G~~   61 (191)
                      .++.||||++|+...-. --+..++|++.++--.+.+|+ .+++.
T Consensus        55 ~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          55 LKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            46899999999777664 568899999999999999998 34544

>KOG4463|consensus

Probab=95.15  E-value=0.035  Score=45.80  Aligned_cols=61  Identities=25%  Similarity=0.371  Sum_probs=50.7

Q ss_pred             CCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q psy13894         20 SPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF   81 (191)
Q Consensus        20 ~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~   81 (191)
                      +..||||++.+.|...+--.+..-++.++.+ +.+||..|+.|+..+-+.++..+.+....+
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            4579999999999999888888877666655 779999999999998888888887766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-13
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	2e-12

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 9/68 (13%), Positives = 26/68 (38%)

Query: 17  NVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNL 76
             +   + +R  +   +H   +H++ ++   FI    +E+  GS ++ ++Y  +      
Sbjct: 43  YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 102

Query: 77  ASAIFVPY 84
                   
Sbjct: 103 VQNYVSGP 110

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 13/69 (18%), Positives = 32/69 (46%)

Query: 15  FYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGG 74
            ++     +F+R +T   +H  ++H++ +++  + L   +EK  GS ++ +I   S +  
Sbjct: 36  PFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLS 95

Query: 75  NLASAIFVP 83
                 F  
Sbjct: 96  GYVQQKFSG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=1.6e-27  Score=185.69  Aligned_cols=149  Identities=15%  Similarity=0.047  Sum_probs=111.1

Q ss_pred             ccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy13894          9 VCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADV   88 (191)
Q Consensus         9 ~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~v   88 (191)
                      ..++.|..  ..++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.|+. .+
T Consensus        32 ~~~~~p~~--~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~v  108 (181)
T 2xov_A           32 WLAWPFDP--TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FG  108 (181)
T ss_dssp             HHSSCCSG--GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CC
T ss_pred             hhcCChhh--ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ce
Confidence            34455542  2578999999999999999999999999999999999999999999999999999999999988754 89


Q ss_pred             chhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhh
Q psy13894         89 SCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGT  168 (191)
Q Consensus        89 GaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~  168 (191)
                      |+||+++|++++....    . ...+..+.   ..+.. .   .......+...+.....+++|+.||++|+++|++++.
T Consensus       109 GaSGai~gl~g~~~~~----~-~~~p~~~~---~l~~~-~---~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~  176 (181)
T 2xov_A          109 GLSGVVYALMGYVWLR----G-ERDPQSGI---YLQRG-L---IIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAF  176 (181)
T ss_dssp             CSHHHHHHHHHHHHHH----H-HHCGGGSC---CCCHH-H---HHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHH----H-hhCcCcee---eeHHH-H---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            9999999999977542    1 11111110   01222 1   1112222222222223579999999999999999999


Q ss_pred             hhcC
Q psy13894        169 TKAR  172 (191)
Q Consensus       169 ~~~~  172 (191)
                      .++|
T Consensus       177 ~~~~  180 (181)
T 2xov_A          177 VDSL  180 (181)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=1.6e-28  Score=193.69  Aligned_cols=153  Identities=16%  Similarity=0.158  Sum_probs=112.2

Q ss_pred             cccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCce
Q psy13894          8 NVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRAD   87 (191)
Q Consensus         8 ~~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~   87 (191)
                      +..++.|...  .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.+++.+.++.|+. .
T Consensus        36 ~~~~~~p~~~--~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~  112 (196)
T 2nr9_A           36 YLMHYPAYEE--QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-F  112 (196)
T ss_dssp             HHHSCCCSGG--GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-C
T ss_pred             HhhcCCHhhc--ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-e
Confidence            3455555432  578999999999999999999999999999999999999999999999999999999999988764 9


Q ss_pred             echhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHH
Q psy13894         88 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYG-LGPFGFNLAHNSGLVVQLEA  166 (191)
Q Consensus        88 vGaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~aHl~G~l~G~l~  166 (191)
                      +|+||+++|++++.... |   .........+   .+..      ......+...+... ..+++|+.||++|+++|+++
T Consensus       113 vGaSGai~gl~g~~~~~-~---~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~  179 (196)
T 2nr9_A          113 FGLSGVVYAVLGYVFIR-D---KLNHHLFDLP---EGFF------TMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIW  179 (196)
T ss_dssp             CCSHHHHHHHHHHHHHH-H---HSSTTSCCCC---CSST------TTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHHH-H---Hhcchhhcch---HHHH------HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHH
Confidence            99999999999976543 1   1000000100   1111      01111111112111 24589999999999999999


Q ss_pred             hhhhcCCCcc
Q psy13894        167 GTTKARDDGN  176 (191)
Q Consensus       167 g~~~~~~~~~  176 (191)
                      +..+.+++++
T Consensus       180 ~~~~~~~~~~  189 (196)
T 2nr9_A          180 GFIDSKLRKN  189 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhcccc
Confidence            9998775443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-08
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	5e-06

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (114), Expect = 5e-08
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 16  YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
           ++     +F+R +T   +H  ++H++ +++  + L   +EK  GS ++ +I   S +   
Sbjct: 37  FDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSG 96

Query: 76  LASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQI 135
                F            V  ++ +  +                      +      +  
Sbjct: 97  YVQQKFSGPWF-GGLSGVVYALMGYVWL------------RGERDPQSGIYLQRGLIIFA 143

Query: 136 IILCLSIFAYGLGPFGFNLAHNSGLVV 162
           +I  ++ +    G    N AH +GL V
Sbjct: 144 LIWIVAGWFDLFGMSMANGAHIAGLAV 170

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 13/148 (8%)

Query: 15  FYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGG 74
               +   + +R  +   +H   +H++ ++   FI    +E+  GS ++ ++Y  +    
Sbjct: 38  PAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAIT 97

Query: 75  NLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQ 134
                      A       V  ++ +  +      +                     T+ 
Sbjct: 98  GYVQNYVSGP-AFFGLSGVVYAVLGYVFIRDKLNHHLF------------DLPEGFFTML 144

Query: 135 IIILCLSIFAYGLGPFGFNLAHNSGLVV 162
           ++ + L   +   G    N AH SGL+V
Sbjct: 145 LVGIALGFISPLFGVEMGNAAHISGLIV 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.95
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.93

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=2.1e-28  Score=189.89  Aligned_cols=145  Identities=17%  Similarity=0.149  Sum_probs=111.6

Q ss_pred             CCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCceechhHHHHHHH
Q psy13894         19 DSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMI   98 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~vGaSg~v~gl~   98 (191)
                      ..++||||++|+.|+|.|+.|+++|++.++.+|..+|+++|+++++.+|+++++.++++..+..+ +..+|+||+++|++
T Consensus        42 ~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~-~~~vGaSG~v~gl~  120 (189)
T d2nr9a1          42 EQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG-PAFFGLSGVVYAVL  120 (189)
T ss_dssp             GGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHH
T ss_pred             cccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCcccchHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999888775 46899999999999


Q ss_pred             HHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHh-ccCchhhHHHHHHHHHHHHHHhhhhcCCCccc
Q psy13894         99 PFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAY-GLGPFGFNLAHNSGLVVQLEAGTTKARDDGNR  177 (191)
Q Consensus        99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~i~~~aHl~G~l~G~l~g~~~~~~~~~~  177 (191)
                      ++.....|    .++....     .+.. .   ...++......+.. ...+++++.||++|+++|+++++..+|.+|++
T Consensus       121 ~~~~~~~~----~~~~~~~-----~~~~-~---~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~~k~~  187 (189)
T d2nr9a1         121 GYVFIRDK----LNHHLFD-----LPEG-F---FTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNS  187 (189)
T ss_dssp             HHHHHHHH----SSTTSCC-----CCCS-S---TTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HhhhHhc-----cHHH-H---HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            98877632    2222122     1111 0   01111111112222 23679999999999999999999987755544

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-25  Score=171.64  Aligned_cols=139  Identities=18%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             CCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCceechhHHHHHHH
Q psy13894         19 DSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMI   98 (191)
Q Consensus        19 ~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~vGaSg~v~gl~   98 (191)
                      ..++||||++|++|+|.|+.|+++||+.++.+|+.+|+++|++|++.+|+++++.|+++..++.++ ...|+||+++|++
T Consensus        40 ~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~-~~~G~sg~i~~l~  118 (180)
T d3b45a1          40 TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP-WFGGLSGVVYALM  118 (180)
T ss_dssp             GGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS-CCCCSHHHHHHHH
T ss_pred             cccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc-ccccccchHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999998864 6899999999999


Q ss_pred             HHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhh
Q psy13894         99 PFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTK  170 (191)
Q Consensus        99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~  170 (191)
                      ++.....    .+......    ..+..    ..................+++++.||++|+++|+++++..
T Consensus       119 ~~~~~~~----~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         119 GYVWLRG----ERDPQSGI----YLQRG----LIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHH----HHCGGGSC----CCCHH----HHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----hhcchhHH----hhHHH----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            9887762    22211111    02221    1111111122222223468899999999999999999874