Psyllid ID: psy138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRSVV
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccEccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHc
Coil and Loop (DISEMBL)
MVDVISIFlskpnlvwengsfdkkvHNTMEGATSLMYAAQQGKDAEVKAILAsrpnavrerDRTRKTVLHYCAENTILSCAETILEVAPdlieaadedgytplHLAAIAGNVPLIHTLLAHRanvnsqdneghsVVHWATVCGEVEALETVLsagaepstpdihggypihyasqmcghasemgNDVRVGLAVLKVLLHHnvdvnvvdkdgrqpilwaasagSSDAILALVKAganveahdkdgltALHCAASRGHRECLETLITLCgadvdvidtngCSALFYAVTLGHADATTLLLQygatpnrqdrkgrtyeYQWRSVV
Flexible Loop (DISEMBL)
MVDVISIflskpnlvwengSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILasrpnavrerdrtrKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQygatpnrqdrkgrtyeyqwrsvv
Low Complexity Region (SEG)
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAvlkvllhhnvdvnvvdkdGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRSVV
Disordered region (IsUnstruct)
***VISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYA***********I*************TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT*******************
Disordered Region (DISOPRED)
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRSVV
Disordered Region (DISEMBL)
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRSVV
Disordered Region (DISPRO)
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN***RKGRTYEYQWRSVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRSVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.841	0.229	0.294	2e-26
Q71S22	1007	Inversin-A OS=Xenopus lae	N/A	N/A	0.869	0.277	0.315	3e-25
Q71S21	1002	Inversin-B OS=Xenopus lae	N/A	N/A	0.859	0.275	0.312	5e-25
Q505D1	1053	Serine/threonine-protein	yes	N/A	0.788	0.240	0.309	6e-25
Q5F478	990	Serine/threonine-protein	no	N/A	0.819	0.265	0.294	7e-24
O15084	1053	Serine/threonine-protein	no	N/A	0.788	0.240	0.302	2e-23
Q8N8A2	993	Serine/threonine-protein	no	N/A	0.819	0.264	0.291	4e-23
B2RXR6	993	Serine/threonine-protein	no	N/A	0.819	0.264	0.287	8e-23
Q06527	323	Ankyrin homolog OS=Alloch	yes	N/A	0.676	0.671	0.340	2e-22
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.785	0.234	0.307	9e-22

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 148/285 (51%), Gaps = 15/285 (5%)

Query: 28   TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
            T  G T L +AA+ G    V  ++ ++ + +  +  + +T+LH+ A++  L+    +++ 
Sbjct: 862  TNSGETILHFAAESGNLNLVNWLIKNKAD-IHAKTNSGETILHFAAKSGNLNLVNWLIKN 920

Query: 88   APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
              D I A    G T LH AA +GN+ L++ L+ ++A+++++ N G +++H+A   G +  
Sbjct: 921  KAD-IHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAESGNLNL 979

Query: 148  LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
            +  ++  G + +T    G   +HY       A E GN     L ++ +L+H  +DVN   
Sbjct: 980  VSLLIHNGTDINTKTDDGLTALHY-------AVESGN-----LNLVSLLIHKGIDVNAKT 1027

Query: 208  KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
              G   + +A   GS D +  L+  GA+V A   DGLTALH A    +   L +L+ + G
Sbjct: 1028 NSGETILHFAVDLGSLDLVSLLMVRGADVNAKTDDGLTALHYAVESDNL-ALVSLLMVYG 1086

Query: 268  ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ADV+  + +G + L YAV     D  +LL+  GA  N ++  G T
Sbjct: 1087 ADVNAKNNSGETPLHYAVIFNSLDLVSLLIHNGADINTKNNSGET 1131

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q71S22|INVSA_XENLA Inversin-A OS=Xenopus laevis GN=invs-a PE=1 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 145/311 (46%), Gaps = 32/311 (10%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV-- 87
           EG T L  A   G    V+ + + R   V   D   +T LH+ A       A  +LE   
Sbjct: 216 EGRTPLHLAVGDGNQEVVRLLTSYRGCNVAPYDNLFRTPLHWAALLGYTPIAHLLLETNN 275

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVP-LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
           +P++   +D  G TPLH AA  GN P  +  LL+H +  +  D EG +   WA   G  E
Sbjct: 276 SPNI--PSDSQGATPLHYAA-QGNCPDTVRVLLSHISVRDEADLEGRTAFMWAAGKGSDE 332

Query: 147 ALETVLSAGAE--PSTPDIHGGYPIHYASQMCGHASE----MGNDVRVG----------- 189
            + T+L    E   +  D +GG  +H AS + G  +     + N V+V            
Sbjct: 333 VVRTMLELDPELEVNRTDKYGGTALHAAS-LSGQITTVRILLENRVQVDAVDVMKHTALF 391

Query: 190 -------LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
                    V+  L+     V++VDKDGR P+ WAA  G+++    L++   N +A D +
Sbjct: 392 RACEMGHREVISTLIKGGAKVHLVDKDGRSPLHWAALGGNANVCQILIENNINPDAQDYE 451

Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT 302
           G T L CAA  G+  C+E L+    AD ++ D NG +AL ++   G+ DA  LLL Y A 
Sbjct: 452 GRTPLQCAAYGGYIGCMEVLME-NKADPNIQDKNGRTALHWSCNNGYLDAVKLLLGYSAF 510

Query: 303 PNRQDRKGRTY 313
           PN+ +     Y
Sbjct: 511 PNQMENTEERY 521

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling (By similarity). Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q71S21|INVSB_XENLA Inversin-B OS=Xenopus laevis GN=invs-b PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 141/314 (44%), Gaps = 38/314 (12%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           EG T L  A   G    V+ + + R   V   D   +T LH+ A       A  +LE   
Sbjct: 216 EGRTPLHLAVGDGNQEVVRLLTSYRGCNVAPYDNLFRTPLHWAALLGHTPIAHLLLERNN 275

Query: 90  DLIEAADEDGYTPLHLAAIAGNVP-LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
                +D  G TPLH AA  GN P  +  LL+H +  +  D EG + + WA   G  E +
Sbjct: 276 SPNIPSDSQGATPLHYAA-QGNCPDTVRVLLSHPSVRDEADLEGRTALMWAAGKGSDEVV 334

Query: 149 ETVLSAGA--EPSTPDIHGGYPIHYASQMCGH---------------------------A 179
            T+L      E +  D +GG  +H AS + G                            A
Sbjct: 335 RTMLELNPKLEVNRTDKYGGTALHAAS-LSGQITTVRILLENRAQADAVDVMKHTPLFRA 393

Query: 180 SEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAH 239
            EMG+       V+  L+     V++VDKDGR P+ WAA  G+++    L++   N +A 
Sbjct: 394 CEMGHR-----EVIATLIKGGAKVHLVDKDGRSPLHWAALGGNANVCQILIENNINPDAQ 448

Query: 240 DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
           D +G T L CAA  G+  C+E L+    AD ++ D NG +AL ++   G+ DA  LLL Y
Sbjct: 449 DYEGRTPLQCAAYGGYIGCMEVLME-NKADPNIQDKNGRTALHWSCNNGYLDAVKLLLGY 507

Query: 300 GATPNRQDRKGRTY 313
            A PN+ +     Y
Sbjct: 508 NAFPNQMENTEERY 521

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling. Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 15/268 (5%)

Query: 46  EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
           E   IL      V  RD+  +T LH  A N  + CAE+++ +  + +  +D  G T LH 
Sbjct: 88  EAVQILLKHSADVNARDKNWQTPLHIAAANKAVKCAESLVPLLSN-VNVSDRAGRTALHH 146

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
           AA +G+  ++  LL+  AN+N+ D +    +HWA   G +E ++ ++S GAE +  D   
Sbjct: 147 AAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKS 206

Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA 225
             P+H A+     +S M       ++V+K LL   VD+N  +  G  P+  A   G    
Sbjct: 207 YTPLHAAA-----SSGM-------ISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVV 254

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVIDTNGCSALFYA 284
           +  L+  GANV   ++ G T LH AA+  H   CLE L+   GADV++   +G + L   
Sbjct: 255 VNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVG-NGADVNMKSKDGKTPLHMT 313

Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
              G    +  ++Q GA  + +D+ G T
Sbjct: 314 ALHGRFSRSQTIIQSGAVIDCEDKNGNT 341

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 15/278 (5%)

Query: 36  MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
           ++ A   +  E   +L      V  RD+  +T LH  A N  L CAE I+ +    +  +
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKALKCAEIIIPMLSS-VNVS 136

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           D  G T LH AA+ G+V +++ LLA  AN+N+ D +    +HWA   G +E +  +++ G
Sbjct: 137 DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLEVVALLINHG 196

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
           AE +  D  G  P+H A+                + ++K LL+  V+++ ++  G   + 
Sbjct: 197 AEVTCKDKKGYTPLHAAAS------------NGQINIVKHLLNLGVEIDEMNIYGNTALH 244

Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVID 274
            A   G    +  L+  GANV   + +G T LH AA+  H   CLE L+   GADV++  
Sbjct: 245 IACYNGQDSVVNELIDYGANVNQPNNNGFTPLHFAAASTHGALCLELLVN-NGADVNIQS 303

Query: 275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +G S L      G    +  L+Q G   +  D+ G T
Sbjct: 304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNT 341

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 15/268 (5%)

Query: 46  EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
           E   +L      V  RD+  +T LH  A N  + CAE ++ +  + +  +D  G T LH 
Sbjct: 88  EAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSN-VNVSDRAGRTALHH 146

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
           AA +G+  ++  LL+  AN+N+ D +    +HWA   G +E ++ ++S GAE +  D   
Sbjct: 147 AAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKS 206

Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA 225
             P+H A+     +S M       ++V+K LL   VD+N  +  G  P+  A   G    
Sbjct: 207 YTPLHAAA-----SSGM-------ISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVV 254

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVIDTNGCSALFYA 284
           +  L+  GA V   ++ G T LH AA+  H   CLE L+   GADV++   +G + L   
Sbjct: 255 VNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVG-NGADVNMKSKDGKTPLHMT 313

Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
              G    +  ++Q GA  + +D+ G T
Sbjct: 314 ALHGRFSRSQTIIQSGAVIDCEDKNGNT 341

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 15/278 (5%)

Query: 36  MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
           ++ A   +  E   +L      V  RD+  +T LH  A N  + CAE I+ +    +  +
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSS-VNVS 136

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           D  G T LH AA+ G+V +++ LLA  AN+N+ D +    +HWA   G ++ +  +++ G
Sbjct: 137 DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
           AE +  D  G  P+H A+                + V+K LL+  V+++ ++  G   + 
Sbjct: 197 AEVTCKDKKGYTPLHAAAS------------NGQINVVKHLLNLGVEIDEINVYGNTALH 244

Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVID 274
            A   G    +  L+  GANV   + +G T LH AA+  H   CLE L+   GADV++  
Sbjct: 245 IACYNGQDAVVNELIDYGANVNQPNNNGFTPLHFAAASTHGALCLELLVN-NGADVNIQS 303

Query: 275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +G S L      G    +  L+Q G   +  D+ G T
Sbjct: 304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNT 341

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 15/278 (5%)

Query: 36  MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
           ++ A   +  E   +L      V  RD+  +T LH  A N  + CAE I+ +    +  +
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSS-VNVS 136

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           D  G T LH AA+ G++ +++ LLA  AN+N+ D +    +HWA   G ++ +  +++ G
Sbjct: 137 DRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
           AE +  D  G  P+H A+                ++V+K LL+  V+++ ++  G   + 
Sbjct: 197 AEVTCKDKKGYTPLHAAAS------------NGQISVVKHLLNLGVEIDEINVYGNTALH 244

Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVID 274
            A   G    +  L+  GANV   +  G T LH AA+  H   CLE L+   GADV++  
Sbjct: 245 IACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVN-NGADVNIQS 303

Query: 275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +G S L      G    +  L+Q G   +  D+ G T
Sbjct: 304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNT 341

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q06527|ANKH_ALLVD Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) GN=Alvin_1094 PE=4 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 119/241 (49%), Gaps = 24/241 (9%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           AA+ D  T L L A+ G+      LL   A+V++ +  G + + +A    ++E +  +LS
Sbjct: 27  AAEPDLETELRLNAMIGDTETAAELLDQGAHVDAPNQFGKTALMFAVEGDDLETVALLLS 86

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHAS------EMGNDV----RVGLAVLKV-------- 195
            GA+ +   + G  P+ +A++  GH        E G  V    R G   L +        
Sbjct: 87  RGADVNARTVAGCTPLTFAAE-AGHIGISALLLERGAHVHDRTRSGWDALMIASRHGITD 145

Query: 196 ----LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
               LL    D    D++GR  ++ AAS G +  +  L++ GA++EA DK G TAL  AA
Sbjct: 146 MVEQLLFKGADPKAADREGRTALMQAASKGETGVLPLLIEGGADLEARDKQGATALLIAA 205

Query: 252 SRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
            +G    +ETL  L GA +D +D  G +AL  AV  GH      LL  GA PNRQDRKG 
Sbjct: 206 DQGQAGAVETLAGL-GAQLDAVDALGSTALILAVGHGHVAMVERLLAMGADPNRQDRKGT 264

Query: 312 T 312
           T
Sbjct: 265 T 265

Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (taxid: 572477)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score =  104 bits (259), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 15/267 (5%)

Query: 46  EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
           EV+++L  + N +   D+ R+T LH  A    ++  E ++    + + A D    TPLH 
Sbjct: 23  EVRSLLNQKEN-INVLDQERRTPLHTAAYIGDVAILELLILSGAN-VNAKDTVWLTPLHR 80

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
           AA + N   +H LL H A+VN++D    + +H A      + +E ++   +  +  D  G
Sbjct: 81  AAASRNEKALHLLLKHSADVNARDKYWQTPLHVAAANRATKCVEAIIPLLSTVNVADRTG 140

Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA 225
              +H+A    GH           L ++ +LL+    ++  DK  RQPI WAA  G  + 
Sbjct: 141 RTALHHAVH-SGH-----------LEMVNLLLNKGASLSTCDKKDRQPIHWAAFLGHLEV 188

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
           +  LV  GA+V   DK G T LH AA+ G  E +  L+ L G ++D  ++ G +AL  A 
Sbjct: 189 LKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRL-GVEIDEPNSFGNTALHIAC 247

Query: 286 TLGHADATTLLLQYGATPNRQDRKGRT 312
            +G       L+ YGA  N+ + KG T
Sbjct: 248 YMGQDAVANELVNYGANVNQPNEKGFT 274

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
241786585	872	ankyrin repeat-containing protein [Ixode	0.816	0.300	0.630	3e-95
189239180	1334	PREDICTED: similar to CG6599 CG6599-PA,	0.803	0.193	0.640	2e-94
242010759	431	ankyrin repeat-containing protein, putat	0.838	0.624	0.627	2e-93
390177613	1595	GA30117 [Drosophila pseudoobscura pseudo	0.881	0.177	0.569	2e-93
270009789	1411	hypothetical protein TcasGA2_TC009087 [T	0.791	0.180	0.645	4e-92
312371412	1551	hypothetical protein AND_22139 [Anophele	0.825	0.170	0.643	4e-92
347966353	1179	AGAP001673-PA [Anopheles gambiae str. PE	0.794	0.216	0.655	1e-90
281362676	1555	CG42534, isoform C [Drosophila melanogas	0.881	0.181	0.574	3e-90
195109911	1194	GI23027 [Drosophila mojavensis] gi|19391	0.862	0.231	0.565	6e-89
195444443	1173	GK11751 [Drosophila willistoni] gi|19416	0.825	0.225	0.589	1e-88

>gi|241786585|ref|XP_002414454.1| ankyrin repeat-containing protein [Ixodes scapularis] gi|215508665|gb|EEC18119.1| ankyrin repeat-containing protein [Ixodes scapularis]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/273 (63%), Positives = 208/273 (76%), Gaps = 11/273 (4%)

Query: 51  LASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG 110
           ++ +P+    RD++ KT LHYCAEN  + CAE +L V P L    DE+GYT LH A I+G
Sbjct: 1   MSVQPSLTAARDKSGKTALHYCAENLTVGCAELLLMVEPGLASVQDEEGYTTLHFAVISG 60

Query: 111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIH 170
           N  ++  L+   A+V+  DNE HS VHWATVCGE+E ++ +++AGA+PSTPDIHG YPIH
Sbjct: 61  NRTMVRFLVDRGADVSVLDNEKHSCVHWATVCGELECMDILVAAGADPSTPDIHGAYPIH 120

Query: 171 YASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAA-----------S 219
           YA+QMCG  SEMGNDVRVGLA L+ L+   VDV+V D+DGR P+LWAA           S
Sbjct: 121 YAAQMCGPNSEMGNDVRVGLAALRRLIQLGVDVSVRDQDGRPPLLWAASVETRPSKTYCS 180

Query: 220 AGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCS 279
           +GSSDAILALV AGA+V A DKDGLTALHCAASRGH +CLETLI+LCGA+VD +D+NGCS
Sbjct: 181 SGSSDAILALVNAGADVSATDKDGLTALHCAASRGHVDCLETLISLCGAEVDAVDSNGCS 240

Query: 280 ALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           ALFYAVTLGHAD T LLL+YGA  NRQD KGRT
Sbjct: 241 ALFYAVTLGHADCTQLLLKYGAMANRQDHKGRT 273

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239180|ref|XP_001807607.1| PREDICTED: similar to CG6599 CG6599-PA, partial [Tribolium castaneum]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/267 (64%), Positives = 209/267 (78%), Gaps = 9/267 (3%)

Query: 55  PNAVRERDRTRKTVLHYCAENTIL---SCAETILEVAPDLIEAADEDGYTPLHLAAIAGN 111
           P  +  RDRT KT LHYC+ +  +     A+ I+  APDL+E+ D+DG+TPLHLA IAGN
Sbjct: 1   PETLLTRDRTGKTPLHYCSTSDNICAAQAADLIVMAAPDLVESHDDDGFTPLHLAVIAGN 60

Query: 112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
           +PL+  LLA++A+VN+ DNE H+VVHWATVCGE  AL  VL+AGA  STPD+HGGYP+HY
Sbjct: 61  MPLVTFLLANKADVNAMDNEKHTVVHWATVCGETSALRAVLAAGAPVSTPDVHGGYPLHY 120

Query: 172 ASQMCGHASE-----MGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSSDA 225
           A+QMCG  S      M  D  +G  VL+ LL H ++ V+V D DGRQP+LWAASAGS+ A
Sbjct: 121 AAQMCGGVSTYPFTTMDKDSNLGFQVLQTLLTHSDIVVSVEDDDGRQPLLWAASAGSAKA 180

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
           +LALV+AGANVEA DKDGLTALHCAASRGH +C+++L+TLCGA  DVID+NGC+AL YAV
Sbjct: 181 VLALVRAGANVEAPDKDGLTALHCAASRGHTDCIDSLLTLCGATPDVIDSNGCTALHYAV 240

Query: 286 TLGHADATTLLLQYGATPNRQDRKGRT 312
           TLGHADAT LLL +GA PNRQDRKGRT
Sbjct: 241 TLGHADATALLLAHGADPNRQDRKGRT 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010759|ref|XP_002426126.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis] gi|212510173|gb|EEB13388.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/282 (62%), Positives = 214/282 (75%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           GAT LMYA QQ + +EV  IL+  P++V+ERDRT KT LHYCAEN  +SCA+ +L+  P+
Sbjct: 6   GATPLMYACQQCQVSEVLNILSRFPDSVKERDRTLKTPLHYCAENKNISCADAVLKAYPE 65

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
           L+ A DE+GY PLHL  IAGN  +I  LL   A VN QD EGHS VHWA V  E EALE 
Sbjct: 66  LVNAQDENGYCPLHLGVIAGNRAIIKFLLRKGAKVNLQDYEGHSAVHWAVVSSEKEALEI 125

Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
           +L AGA+PS PD HGGYPIHYA Q+CG  SE    +   + ++++L+   VD+NVVDKDG
Sbjct: 126 ILEAGADPSIPDKHGGYPIHYAVQLCGPDSENKKKLDNAVKIVQILISFGVDINVVDKDG 185

Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
           R+PILWAASAGS+ AI+ L+ +GA +EA D+DGLTALHCAASRGH E +ETLI L  + V
Sbjct: 186 REPILWAASAGSASAIIHLINSGARIEAADRDGLTALHCAASRGHTETIETLIGLSESQV 245

Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           DVID NGCSALFYAVTLGHAD+T +LL+ GA PNRQDRKGRT
Sbjct: 246 DVIDGNGCSALFYAVTLGHADSTEVLLKLGADPNRQDRKGRT 287

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177613|ref|XP_001358312.3| GA30117 [Drosophila pseudoobscura pseudoobscura] gi|388859118|gb|EAL27450.3| GA30117 [Drosophila pseudoobscura pseudoobscura]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/293 (56%), Positives = 220/293 (75%), Gaps = 10/293 (3%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA- 88
           EG ++LMYA Q+G   +V A + ++P  +R+RDR+ +  LHYCA   +    + +   + 
Sbjct: 134 EGCSTLMYACQRGDIVQVLAQMRAKPQLLRQRDRSNRNALHYCAAQDLEQTRDLVAAASI 193

Query: 89  ----PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
               P+L+E+ADEDG+TPLHLA I GN+ +++ LLA++A+VN+ DNEGHSVVHWATVCGE
Sbjct: 194 AIAAPELLESADEDGFTPLHLAVIQGNLAMVNLLLANKADVNAVDNEGHSVVHWATVCGE 253

Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA----SEMGNDVRVGLAVLKVLL-HH 199
           VE+L  VL+AGA  + PD++GG P+HYA+QMCG +     +  N  ++ L +L +LL H 
Sbjct: 254 VESLRAVLAAGANVAQPDVNGGTPLHYAAQMCGASYDSKQQQSNSSKLALEILGILLAHP 313

Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
              V+V DKDGRQP+LWAASAGS+ A++ALVKAGA VE+ DKDGLTALHCA SRGH EC+
Sbjct: 314 QSSVDVQDKDGRQPLLWAASAGSAKAMIALVKAGARVESADKDGLTALHCAGSRGHTECI 373

Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +TLI+LCGA  D+ID+NGC+AL YAVTLGHAD+T  LL   A PNRQDRKGRT
Sbjct: 374 DTLISLCGAPTDLIDSNGCTALHYAVTLGHADSTARLLDLEADPNRQDRKGRT 426

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009789|gb|EFA06237.1| hypothetical protein TcasGA2_TC009087 [Tribolium castaneum]

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 169/262 (64%), Positives = 207/262 (79%), Gaps = 8/262 (3%)

Query: 55  PNAVRERDRTRKTVLHYCAENTILSCAET---ILEVAPDLIEAADEDGYTPLHLAAIAGN 111
           P  +  RDRT KT LHYC+ +  +  A+    I+  APDL+E+ D+DG+TPLHLA IAGN
Sbjct: 13  PETLLTRDRTGKTPLHYCSTSDNICAAQAADLIVMAAPDLVESHDDDGFTPLHLAVIAGN 72

Query: 112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
           +PL+  LLA++A+VN+ DNE H+VVHWATVCGE  AL  VL+AGA  STPD+HGGYP+HY
Sbjct: 73  MPLVTFLLANKADVNAMDNEKHTVVHWATVCGETSALRAVLAAGAPVSTPDVHGGYPLHY 132

Query: 172 ASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSSDAILALV 230
           A+QMCG       D  +G  VL+ LL H ++ V+V D DGRQP+LWAASAGS+ A+LALV
Sbjct: 133 AAQMCGG----DKDSNLGFQVLQTLLTHSDIVVSVEDDDGRQPLLWAASAGSAKAVLALV 188

Query: 231 KAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHA 290
           +AGANVEA DKDGLTALHCAASRGH +C+++L+TLCGA  DVID+NGC+AL YAVTLGHA
Sbjct: 189 RAGANVEAPDKDGLTALHCAASRGHTDCIDSLLTLCGATPDVIDSNGCTALHYAVTLGHA 248

Query: 291 DATTLLLQYGATPNRQDRKGRT 312
           DAT LLL +GA PNRQDRKGRT
Sbjct: 249 DATALLLAHGADPNRQDRKGRT 270

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371412|gb|EFR19610.1| hypothetical protein AND_22139 [Anopheles darlingi]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 175/272 (64%), Positives = 218/272 (80%), Gaps = 7/272 (2%)

Query: 47  VKAILAS-RPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
           V++++ S  P+AV  RDR+ K+ LHYC+ +  ++ A ++  VAP+LIE+ADEDG+TPLHL
Sbjct: 18  VRSLVRSLEPSAVHRRDRSNKSALHYCSSSQDIAAAASVAMVAPELIESADEDGFTPLHL 77

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
           A I GN+ L++ LLA+ A+VN+ DNEGHSVVHWATVCGEVEAL  VLSAGA+ STPDI+G
Sbjct: 78  AVIQGNLQLVNLLLANGADVNALDNEGHSVVHWATVCGEVEALRAVLSAGADVSTPDING 137

Query: 166 GYPIHYASQMCGHASEMGNDVR----VGLAVLKVLLHH-NVDVNVVDKDGRQPILWAASA 220
           G P+HYA+QMCG A+  G   R    + L +L  LL+H +  V V DKDGRQP+LWAASA
Sbjct: 138 GSPLHYAAQMCG-ANYEGKTARASAKLALEILSTLLNHPDTSVEVEDKDGRQPLLWAASA 196

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           GS+ A+LAL+KAGA+VE+ DKDGLTALHCAASRGH EC++TLI LCGA  D ID+NGC+A
Sbjct: 197 GSAKAVLALIKAGAHVESADKDGLTALHCAASRGHTECIDTLINLCGAHTDQIDSNGCTA 256

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L YAVTLGHADAT+LLL+  A PNRQDRKGRT
Sbjct: 257 LHYAVTLGHADATSLLLKLDADPNRQDRKGRT 288

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966353|ref|XP_001238478.3| AGAP001673-PA [Anopheles gambiae str. PEST] gi|333470098|gb|EAU75647.3| AGAP001673-PA [Anopheles gambiae str. PEST]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/261 (65%), Positives = 209/261 (80%), Gaps = 6/261 (2%)

Query: 57  AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIH 116
           AV  RDR+ K+ LHYC+    ++ A ++  VAP+LIE+ADEDG+TPLHLA I GN+ L++
Sbjct: 1   AVHRRDRSNKSALHYCSSAQDIAAAASVAMVAPELIESADEDGFTPLHLAVIQGNLQLVN 60

Query: 117 TLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC 176
            LLA+ A+VN+ DNEGHSVVHWATVCGEVEAL  VL+AGA+ STPDI+GG P+HYA+QMC
Sbjct: 61  LLLANGADVNALDNEGHSVVHWATVCGEVEALRAVLAAGADVSTPDINGGSPLHYAAQMC 120

Query: 177 GHASEMGNDVR----VGLAVLKVLLHH-NVDVNVVDKDGRQPILWAASAGSSDAILALVK 231
           G A+  G   R    + L +L  LL+H +  V V DKDGRQP+LWAASAGS+ A+LAL+K
Sbjct: 121 G-ANYEGKTARASAKLALEILNTLLNHPDTSVEVEDKDGRQPLLWAASAGSAKAVLALIK 179

Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
           AGA+VE+ DKDGLTALHCAASRGH EC++TLI LCGA  D ID+NGC+AL YAVTLGHAD
Sbjct: 180 AGAHVESADKDGLTALHCAASRGHTECIDTLINLCGAHTDQIDSNGCTALHYAVTLGHAD 239

Query: 292 ATTLLLQYGATPNRQDRKGRT 312
           AT+LLL+  A PNRQDRKGRT
Sbjct: 240 ATSLLLKLDADPNRQDRKGRT 260

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281362676|ref|NP_651560.2| CG42534, isoform C [Drosophila melanogaster] gi|272477203|gb|AAF56703.3| CG42534, isoform C [Drosophila melanogaster]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/296 (57%), Positives = 215/296 (72%), Gaps = 13/296 (4%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA- 88
           EG TSLMYA Q+G   +V A +  +P  +R+RDR+ +  LHYCA        + +   + 
Sbjct: 122 EGCTSLMYACQRGDIVQVLAQMREKPELLRQRDRSHRNALHYCAAQDSEGSKDLVAAASI 181

Query: 89  ----PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE 144
               P+L+E+ADEDG+TPLHLA I GN+ +++ LLA++A+VN+ DNEGHSVVHWATVCGE
Sbjct: 182 AIAAPELLESADEDGFTPLHLAVIQGNLAMVNLLLANKADVNAVDNEGHSVVHWATVCGE 241

Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND-------VRVGLAVLKVLL 197
           VE+L  VL+AGA  + PD +GG P+HYA+QMCG + +            R+ L +L +LL
Sbjct: 242 VESLRAVLAAGASVAKPDANGGTPLHYAAQMCGASKQDSKQQASSSNSSRLSLEILGILL 301

Query: 198 HH-NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR 256
            H    V+V DKDGRQP+LWAASAGS+ A++ALVKAGA VE+ DKDGLTALHCA SRGH 
Sbjct: 302 SHPQSSVDVQDKDGRQPLLWAASAGSAKAVIALVKAGARVESSDKDGLTALHCAGSRGHT 361

Query: 257 ECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           EC++TLI LCGA  D+ID+NGC+AL YAVTLGHADAT  LL   A PNRQDRKGRT
Sbjct: 362 ECIDTLIGLCGAPTDLIDSNGCTALHYAVTLGHADATARLLDLEADPNRQDRKGRT 417

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109911|ref|XP_001999525.1| GI23027 [Drosophila mojavensis] gi|193916119|gb|EDW14986.1| GI23027 [Drosophila mojavensis]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 163/288 (56%), Positives = 214/288 (74%), Gaps = 11/288 (3%)

Query: 36  MYAAQQGKDAEVKAILAS--RPNAVRERDRTRKTVLHYCAENTILSCAETILEVA----- 88
           M+A+    D  ++A +A+   P  +R+RDR+ +  LHYCA   +    + +   +     
Sbjct: 1   MFASPLEFDVVLRAKMANVNLPQLLRQRDRSNRNALHYCAAQDLEQTRDLVAAASIAIAA 60

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
           P+L+E+ADEDG+TPLHLA I GN+ +++ LLA++A+VN+ DNEGHSVVHWATVCGE+EAL
Sbjct: 61  PELLESADEDGFTPLHLAVIQGNLAMVNLLLANKADVNAVDNEGHSVVHWATVCGEIEAL 120

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHA---SEMGNDVRVGLAVLKVLL-HHNVDVN 204
             VL+AGA  + PD++GG P+HYA+QMCG +    +  N  ++ L +L +LL H    V+
Sbjct: 121 RAVLAAGASVAKPDVNGGTPLHYAAQMCGASYDNKQQSNSSKLALEILGILLAHPQASVD 180

Query: 205 VVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT 264
           V DKDGRQP+LWAASAGS+ A++ALVKAGA VE+ DKDGLTALHCA SRGH EC++TLI+
Sbjct: 181 VQDKDGRQPLLWAASAGSAKAVIALVKAGARVESADKDGLTALHCAGSRGHTECIDTLIS 240

Query: 265 LCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           LCGA  D+ID+NGC+AL YAVTLGHADAT  LL   A PNRQDRKGRT
Sbjct: 241 LCGAPTDLIDSNGCTALHYAVTLGHADATARLLDLEADPNRQDRKGRT 288

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444443|ref|XP_002069869.1| GK11751 [Drosophila willistoni] gi|194165954|gb|EDW80855.1| GK11751 [Drosophila willistoni]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/275 (58%), Positives = 209/275 (76%), Gaps = 10/275 (3%)

Query: 48  KAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA-----PDLIEAADEDGYTP 102
           K + A+ P  +R+RDR+ +  LHYCA   +    + +   +     P+L+E+ADEDG+TP
Sbjct: 15  KNVNANLPQLLRQRDRSNRNALHYCAAQDVEQTRDLVAAASIAIAAPELLESADEDGFTP 74

Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
           LHLA I GN+ +++ LLA++A+VN+ DNEGHSVVHWATVCGEVE+L  VL+AGA  + PD
Sbjct: 75  LHLAVIQGNLAMVNLLLANKADVNAVDNEGHSVVHWATVCGEVESLRAVLAAGANVAKPD 134

Query: 163 IHGGYPIHYASQMCG---HASEMG-NDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWA 217
           ++GG P+HYA+QMCG    +S+ G N  ++ L +L +LL H    V+V DKDGRQP+LWA
Sbjct: 135 VNGGTPLHYAAQMCGASYDSSKQGSNSSKLALEILGILLAHPQSSVDVQDKDGRQPLLWA 194

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           ASAGS+ A++ALVKAGA VE+ DKDGLTALHCA SRGH EC++TLI+LCGA  D+ID+NG
Sbjct: 195 ASAGSAKAVIALVKAGARVESADKDGLTALHCAGSRGHTECIDTLISLCGAPTDLIDSNG 254

Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           C+AL YAVTLGHADAT  LL   A PNRQDRKGRT
Sbjct: 255 CTALHYAVTLGHADATARLLDLEADPNRQDRKGRT 289

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
UNIPROTKB|Q8N8A2	993	ANKRD44 "Serine/threonine-prot	0.819	0.264	0.280	6.1e-23
MGI|MGI:3045243	993	Ankrd44 "ankyrin repeat domain	0.819	0.264	0.280	7.7e-23
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.788	0.240	0.287	1.8e-22
UNIPROTKB|O15084	1053	ANKRD28 "Serine/threonine-prot	0.788	0.240	0.279	2.7e-21
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.819	0.245	0.294	5.7e-21
ZFIN|ZDB-GENE-040426-2042	835	ripk4 "receptor-interacting se	0.838	0.322	0.292	8e-21
ZFIN|ZDB-GENE-020507-2	1025	invs "inversin" [Danio rerio (	0.841	0.263	0.291	1.1e-20
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.841	0.262	0.284	2.4e-20
UNIPROTKB|F1N8D6	1100	TNKS2 "Uncharacterized protein	0.859	0.250	0.282	2.6e-20
UNIPROTKB|F1P4A9	1167	TNKS2 "Uncharacterized protein	0.859	0.236	0.282	2.8e-20

UNIPROTKB|Q8N8A2 ANKRD44 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 78/278 (28%), Positives = 127/278 (45%)

Query:    36 MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
             ++ A   +  E   +L      V  RD+  +T LH  A N  + CAE I+ +    +  +
Sbjct:    78 LHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSS-VNVS 136

Query:    96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
             D  G T LH AA+ G+V +++ LLA  AN+N+ D +    +HWA   G ++ +  +++ G
Sbjct:   137 DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query:   156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
             AE +  D  G  P+H A+   G  + + + + +G+                   G   + 
Sbjct:   197 AEVTCKDKKGYTPLHAAASN-GQINVVKHLLNLGVEIDEINVY-----------GNTALH 244

Query:   216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVID 274
              A   G    +  L+  GANV   + +G T LH AA+  H   CLE L+   GADV++  
Sbjct:   245 IACYNGQDAVVNELIDYGANVNQPNNNGFTPLHFAAASTHGALCLELLVNN-GADVNIQS 303

Query:   275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              +G S L      G    +  L+Q G   +  D+ G T
Sbjct:   304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNT 341

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:3045243 Ankrd44 "ankyrin repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 7.7e-23, P = 7.7e-23
 Identities = 78/278 (28%), Positives = 126/278 (45%)

Query:    36 MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
             ++ A   +  E   +L      V  RD+  +T LH  A N  + CAE I+ +    +  +
Sbjct:    78 LHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSS-VNVS 136

Query:    96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
             D  G T LH AA+ G++ +++ LLA  AN+N+ D +    +HWA   G ++ +  +++ G
Sbjct:   137 DRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query:   156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
             AE +  D  G  P+H A+   G  S + + + +G+                   G   + 
Sbjct:   197 AEVTCKDKKGYTPLHAAASN-GQISVVKHLLNLGVEIDEINVY-----------GNTALH 244

Query:   216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVID 274
              A   G    +  L+  GANV   +  G T LH AA+  H   CLE L+   GADV++  
Sbjct:   245 IACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNN-GADVNIQS 303

Query:   275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              +G S L      G    +  L+Q G   +  D+ G T
Sbjct:   304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNT 341

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 77/268 (28%), Positives = 125/268 (46%)

Query:    46 EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
             E   IL      V  RD+  +T LH  A N  + CAE+++ +  + +  +D  G T LH 
Sbjct:    88 EAVQILLKHSADVNARDKNWQTPLHIAAANKAVKCAESLVPLLSN-VNVSDRAGRTALHH 146

Query:   106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
             AA +G+  ++  LL+  AN+N+ D +    +HWA   G +E ++ ++S GAE +  D   
Sbjct:   147 AAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKS 206

Query:   166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
               P+H A+   G  S +   + +G+                   G  P+  A   G    
Sbjct:   207 YTPLHAAASS-GMISVVKYLLDLGV-----------DMNEPNAYGNTPLHVACYNGQDVV 254

Query:   226 ILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVIDTNGCSALFYA 284
             +  L+  GANV   ++ G T LH AA+  H   CLE L+   GADV++   +G + L   
Sbjct:   255 VNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVGN-GADVNMKSKDGKTPLHMT 313

Query:   285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
                G    +  ++Q GA  + +D+ G T
Sbjct:   314 ALHGRFSRSQTIIQSGAVIDCEDKNGNT 341

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O15084 ANKRD28 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 75/268 (27%), Positives = 123/268 (45%)

Query:    46 EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL 105
             E   +L      V  RD+  +T LH  A N  + CAE ++ +  + +  +D  G T LH 
Sbjct:    88 EAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSN-VNVSDRAGRTALHH 146

Query:   106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
             AA +G+  ++  LL+  AN+N+ D +    +HWA   G +E ++ ++S GAE +  D   
Sbjct:   147 AAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKS 206

Query:   166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
               P+H A+   G  S +   + +G+                   G  P+  A   G    
Sbjct:   207 YTPLHAAASS-GMISVVKYLLDLGV-----------DMNEPNAYGNTPLHVACYNGQDVV 254

Query:   226 ILALVKAGANVEAHDKDGLTALHCAASRGHRE-CLETLITLCGADVDVIDTNGCSALFYA 284
             +  L+  GA V   ++ G T LH AA+  H   CLE L+   GADV++   +G + L   
Sbjct:   255 VNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGN-GADVNMKSKDGKTPLHMT 313

Query:   285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
                G    +  ++Q GA  + +D+ G T
Sbjct:   314 ALHGRFSRSQTIIQSGAVIDCEDKNGNT 341

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 5.7e-21, P = 5.7e-21
 Identities = 82/278 (29%), Positives = 119/278 (42%)

Query:    36 MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA 95
             ++ A   ++     +L  +   V  RD+  +T LH  A N    C ET+L     L   A
Sbjct:    78 LHRAAASRNERAVGLLLRKGADVTARDKYWQTPLHIAAANRATRCVETLLPHVSSL-NMA 136

Query:    96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
             D  G  PLH AA +G   ++  LL   AN+++ D +    +HWA   G +E ++ ++S G
Sbjct:   137 DRTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQPIHWAAYLGHLEVVKLLVSQG 196

Query:   156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPIL 215
             ++ S  D  G  P+H A+   GH   +   +R G                    G   + 
Sbjct:   197 SDKSCKDKRGYTPLH-AAAASGHVDVVKYLLRNG-----------AEIDEPNAFGNTALH 244

Query:   216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA-SRGHRECLETLITLCGADVDVID 274
              A   G       LV  GANV   +  G T LH AA S     CLE L+   GADV++  
Sbjct:   245 VACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNN-GADVNMQS 303

Query:   275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               G S L  A   G    + +L+Q G   +  DR G T
Sbjct:   304 KEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNT 341

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-2042 ripk4 "receptor-interacting serine-threonine kinase 4" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 84/287 (29%), Positives = 117/287 (40%)

Query:    29 MEGATSLM-YAAQQGKDAEVKAILASR--PNAVRERDRTRKTVLHYCAENTILSCAETIL 85
             ++G ++L+ YA     +  VK +L S   PN    +  T    LH  AE  +   +E +L
Sbjct:   446 LDGGSNLLHYAVSLANEEAVKFLLLSNCNPNLANAQGATP---LHQAAEKRLKGVSEILL 502

Query:    86 EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
                   + A DED YTPLH AA  G+  L   LL   A++N  D +G +  H A   G+ 
Sbjct:   503 SRKTTNVNAKDEDQYTPLHFAAQNGDEALTRLLLDRSASINETDAQGRTPTHIACHHGQE 562

Query:   146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXX 205
               +  +LS GA+           +H A+   GH         +G+               
Sbjct:   563 NVVRVLLSRGADVHVKGKDDWTALHLAAWK-GH---------LGIVKLLVKQAGADVDGQ 612

Query:   206 XXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
                 GR P+  A+  G       LV+ GANV     D    LH AA  GH      L+  
Sbjct:   613 TSD-GRSPLHLASQRGQYRVARILVELGANVHLTSDDLYAPLHVAAETGHTSTSRLLVKH 671

Query:   266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               AD+     NGC+AL  A   GH     +LL  GA P   +   RT
Sbjct:   672 -DADIKSRTANGCTALHLASQKGHLPTVKMLLAEGADPESVNHDLRT 717

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

ZFIN|ZDB-GENE-020507-2 invs "inversin" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 83/285 (29%), Positives = 125/285 (43%)

Query:    30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
             EG T L +A   G +A V+ + +    +V   D   +T LH+ A          +LE   
Sbjct:   213 EGRTPLHFAVADGNEAVVEVLTSYEGCSVTAYDNLFRTPLHWAALLGHAKIVHLLLERNK 272

Query:    90 DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
               +  +D  G TPLH  A +     +   L H +  +  D EG +   WA   G  + ++
Sbjct:   273 SGMIPSDSQGATPLHYGAQSNYADTVAVFLKHHSVRDEPDLEGRTAFMWAAGKGSNDVIK 332

Query:   150 TVLSA--GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXX 207
              +L      + +  D +GG  +H A+ + GH S     VR+ L                 
Sbjct:   333 IMLDLKKDIDINMTDKYGGTALH-AAALSGHVST----VRLLLEQGGMVDPLDVMKHT-- 385

Query:   208 XXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
                  P+  A   G  D IL L+K GA V+  D DG +ALH AA  G+ E  E L+   G
Sbjct:   386 -----PLFRACEMGHRDVILTLIKGGARVDLVDIDGHSALHWAALGGNAEVCEVLMEN-G 439

Query:   268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
                ++ D  G + L  A   G+ +   LL+Q+ A PN QD++GRT
Sbjct:   440 ISPNLQDQAGRTPLQCAAYAGYINCMALLIQHDADPNIQDKEGRT 484

GO:0001822 "kidney development" evidence=IMP

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0035844 "cloaca development" evidence=IGI

GO:0072114 "pronephros morphogenesis" evidence=IGI

GO:0072372 "primary cilium" evidence=IDA

GO:0072116 "pronephros formation" evidence=IGI

GO:0001947 "heart looping" evidence=IGI

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 253 (94.1 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 81/285 (28%), Positives = 127/285 (44%)

Query:    28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
             T+ G T L YAA +GK++ V+ +L     A   ++ T +T + Y A     S    +L  
Sbjct:   637 TISGKTPLSYAASKGKESVVRLLLQHGAQA-DSKNNTGQTPISYAASKGHESVVRLLLTH 695

Query:    88 APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
                    A+  G TPL  AA  G+  ++   L H A  + +D +G + +  A   G    
Sbjct:   696 GAQADSKANW-GQTPLSRAAFDGHESVVRLFLEHGAQADCKDGDGGTPLSSAAATGHESV 754

Query:   148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXX 207
             +  +L  GA+  + D     P+ YA+   G+ S     V++ L                 
Sbjct:   755 VRLLLKHGAQADSKDDDCRTPLSYAASN-GYESV----VKLLLEHGARADSKDDDF---- 805

Query:   208 XXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
                R P+ +AAS G    +  L++ GA  ++ DKD  T L  AASRG+   +  L+   G
Sbjct:   806 ---RTPLSYAASYGYESVVKLLLEHGARTDSKDKDSQTPLSYAASRGYESVVRILLEN-G 861

Query:   268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             A  +  D +  + L YA + GH     LLLQYGA  + +   G+T
Sbjct:   862 ARANSRDKDSHTPLSYAASKGHESVVRLLLQYGAQADSETSSGQT 906

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1N8D6 TNKS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 84/297 (28%), Positives = 132/297 (44%)

Query:    34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI---LSCAETILEVAPD 90
             SL+ AA++   A +K  L S      +  +T +T LH  A +         E +L    +
Sbjct:   268 SLLQAARESDVARIKKHL-SLETVNFKHPQTHETALHCAAASPYPKRKQVCELLLRKGAN 326

Query:    91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
             + E   ++  TPLH+A+   +  ++  ++ H A VN+ DN G + +H A  CG ++    
Sbjct:   327 INEKT-KNFLTPLHVASEKAHNDVVEVVVKHEAKVNALDNLGQTSLHRAAHCGHLQTCRL 385

Query:   151 VLSAGAEPSTPDIHGGYPIHYAS----QMCGHASEMGND---------VRVGLAXXXXXX 197
             +LS+G +PS   + G   +   +    Q+      +GN           + G        
Sbjct:   386 LLSSGCDPSIVSLQGFTALQMGNESVQQLLQEGIPLGNSDADRQLLEAAKAGDVDTVKKL 445

Query:   198 XXXXXXXXXXXXGRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
                         GRQ  P+ +AA       +  L++ GA+V A DK GL  LH A S GH
Sbjct:   446 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 505

Query:   256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              E  E L+   GA V+V D    + L  A   G  +   LLLQ+GA P +++R G T
Sbjct:   506 YEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 561

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|F1P4A9 TNKS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 84/297 (28%), Positives = 132/297 (44%)

Query:    34 SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI---LSCAETILEVAPD 90
             SL+ AA++   A +K  L S      +  +T +T LH  A +         E +L    +
Sbjct:   335 SLLQAARESDVARIKKHL-SLETVNFKHPQTHETALHCAAASPYPKRKQVCELLLRKGAN 393

Query:    91 LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
             + E   ++  TPLH+A+   +  ++  ++ H A VN+ DN G + +H A  CG ++    
Sbjct:   394 INEKT-KNFLTPLHVASEKAHNDVVEVVVKHEAKVNALDNLGQTSLHRAAHCGHLQTCRL 452

Query:   151 VLSAGAEPSTPDIHGGYPIHYAS----QMCGHASEMGND---------VRVGLAXXXXXX 197
             +LS+G +PS   + G   +   +    Q+      +GN           + G        
Sbjct:   453 LLSSGCDPSIVSLQGFTALQMGNESVQQLLQEGIPLGNSDADRQLLEAAKAGDVDTVKKL 512

Query:   198 XXXXXXXXXXXXGRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
                         GRQ  P+ +AA       +  L++ GA+V A DK GL  LH A S GH
Sbjct:   513 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 572

Query:   256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              E  E L+   GA V+V D    + L  A   G  +   LLLQ+GA P +++R G T
Sbjct:   573 YEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 628

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q06527	ANKH_ALLVD	No assigned EC number	0.3402	0.6760	0.6718	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	321
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	9e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.002
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (264), Expect = 3e-28
 Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 45/170 (26%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A DEDG TPLHLAA  G++ ++  LL + A+VN++DN+G +                   
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRT------------------- 42

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
                         P+H A+   GH           L ++K+LL    DVN  DKDG  P
Sbjct: 43  --------------PLHLAA-KNGH-----------LEIVKLLLEKGADVNARDKDGNTP 76

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           +  AA  G+ D +  L+K GA+V A DKDG T LH AA  GH E ++ L+
Sbjct: 77  LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (263), Expect = 4e-28
 Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           N  D+DGR P+  AAS G  + +  L++ GA+V A D DG T LH AA  GH E ++ L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              GADV+  D +G + L  A   G+ D   LLL++GA  N +D+ GRT
Sbjct: 61  E-KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT 108

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.8 bits (249), Expect = 5e-26
 Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 13/136 (9%)

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG 221
           D  G  P+H A+   GH           L V+K+LL +  DVN  D DGR P+  AA  G
Sbjct: 4   DEDGRTPLHLAASN-GH-----------LEVVKLLLENGADVNAKDNDGRTPLHLAAKNG 51

Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
             + +  L++ GA+V A DKDG T LH AA  G+ + ++ L+   GADV+  D +G + L
Sbjct: 52  HLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPL 110

Query: 282 FYAVTLGHADATTLLL 297
             A   GH +   LLL
Sbjct: 111 HLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.5 bits (225), Expect = 2e-22
 Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 60  ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL 119
            RD   +T LH  A N  L   + +LE   D + A D DG TPLHLAA  G++ ++  LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 120 AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
              A+VN++D +G++ +H A   G ++ ++ +L  GA+ +  D  G  P+H A++
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 5e-21
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +G T L  AA  G    VK +L +  + V  +D   +T LH  A+N  L   + +LE   
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D + A D+DG TPLHLAA  GN+ ++  LL H A+VN++D +G + +H A   G +E ++
Sbjct: 65  D-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVK 123

Query: 150 TVL 152
            +L
Sbjct: 124 LLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
           +  AA  G+ + +  L++ GA+V   D D  TALH AA  G+ E ++ L+   GADV+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLE-HGADVNAK 57

Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
           D +G +AL  A   G+ +   LLL++GA  N +D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE 237
            A++ GN     L ++K+LL    DVN+ D D    +  AA  G+ + +  L++ GA+V 
Sbjct: 3   LAAKNGN-----LELVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
           A DKDG TALH AA  G+ E ++ L+   GAD+++ D
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH-GADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 58/279 (20%), Positives = 101/279 (36%), Gaps = 27/279 (9%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA--ENTILSCAETILEVA 88
           G T L          +V  +L      V  +D+  +T LH      N        +L   
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG 142

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVP--LIHTLLAHRANVNSQDNEGHSVVH-WATVCGEV 145
            D + A D  G TPL +   + N    L+  L+   A+V + D+   S++H         
Sbjct: 143 AD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR 201

Query: 146 EA-LETVLSAGAEPSTPDIHGGYPIHYASQMCG-HASEMGNDVRVGLAVLKVLLHHNVDV 203
              +  ++ AG +P+  D+ G  P+H  +       S +             LL   + +
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP-----------LLIAGISI 250

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           N  ++ G+ P+ +AA   +  A   L+  GA++ A   DG T L       +   +   +
Sbjct: 251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL 310

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHA---DATTLLLQY 299
                  + +     + L  A   G     DAT L +  
Sbjct: 311 AKN-PSAETVA----ATLNTASVAGGDIPSDATRLCVAK 344

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.8 bits (175), Expect = 1e-14
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 11/199 (5%)

Query: 70  HYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD 129
           + C  + +L     +L +          + Y  L L   A    L+  L+    ++ ++D
Sbjct: 12  NKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIV-DRHLAARD 70

Query: 130 NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG 189
            +G   +H A   G+ + ++ +L++GA+ +  D  G  P+H A+ + G+  E   +V   
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA-LNGNPPEGNIEV--- 126

Query: 190 LAVLKVLLHHNV---DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA 246
               K+LL         N+ D+DG  P+ WAA  G +D +  L++AGA+  + +  G+TA
Sbjct: 127 ---AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183

Query: 247 LHCAASRGHRECLETLITL 265
           L  AA  G  E ++ L+  
Sbjct: 184 LDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 50/254 (19%), Positives = 102/254 (40%), Gaps = 42/254 (16%)

Query: 33  TSLMYAAQQGKDAE-VKAILASRPNAVRERDRTRKTVLHYCA-----ENTILSCAETILE 86
              +Y A++ ++ + VK +L +  + +    +   T LHY +        +    + +LE
Sbjct: 36  VLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE 94

Query: 87  VAPDLIEAADEDGYTPLHLAAIA--GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG- 143
              + + A D +G TPL  A      +  ++  LL + ANVN ++++G +++H       
Sbjct: 95  YGAN-VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK 153

Query: 144 -EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD 202
            +++ L+ ++  G                             D+      +  LL + V 
Sbjct: 154 IDLKILKLLIDKGV----------------------------DINA-KNRVNYLLSYGVP 184

Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
           +N+ D  G  P+ +A    + + +  L+  GAN    +K G T LH A    + + +  L
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI-LNNNKEIFKL 243

Query: 263 ITLCGADVDVIDTN 276
           +   G  +  I   
Sbjct: 244 LLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 49/261 (18%)

Query: 60  ERDRT-RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL 118
            + R  +   + Y                  DL + + +    PL+LA  A N+ ++  L
Sbjct: 8   TKSRIIKVKNIKYIIME-------------DDLNDYSYKKPVLPLYLAKEARNIDVVKIL 54

Query: 119 LAHRANVNSQDNE----GHSVVHWATVCGEV-EALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L + A++NS         H + +      +V E ++ +L  GA  + PD +G  P+ YA 
Sbjct: 55  LDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114

Query: 174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD-AILA-LVK 231
               ++  +          ++ LL +  +VN+ + DG   +     +   D  IL  L+ 
Sbjct: 115 SKKSNSYSI----------VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164

Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
            G ++ A ++                 +  L++  G  +++ D  G + L YAV   + +
Sbjct: 165 KGVDINAKNR-----------------VNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPE 206

Query: 292 ATTLLLQYGATPNRQDRKGRT 312
               LL  GA PN  ++ G T
Sbjct: 207 FVKYLLDLGANPNLVNKYGDT 227

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 25/278 (8%)

Query: 46  EVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETI---LEVAPDLIEAADEDGYTP 102
           EV+ +LA+  + V  R    KT LH     +     + +   LE   D + A +  G+TP
Sbjct: 29  EVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTP 86

Query: 103 LHLAAIAGNV-PLIHTLLAHRANVNSQDNEGHSV--VHWATVCGEVEALETVLSAGAEPS 159
           LHL         +I  L+   A+VN++D  G +   V+ +      + +  +L  GA+ +
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 160 TPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI-LWAA 218
             D++G  P+            + +     + +L++L+    DV  VD   R  +     
Sbjct: 147 ALDLYGMTPLA---------VLLKS-RNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ 196

Query: 219 SAGSSDAIL-ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT---LCGADVDVID 274
           S      I+  L++AG +  A D  G T LH  A+     C  +L+    + G  ++  +
Sbjct: 197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT--GSSCKRSLVLPLLIAGISINARN 254

Query: 275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             G + L YA    +  A   L+  GA  N     G T
Sbjct: 255 RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNT 292

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 14/105 (13%)

Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
           LHLAA  GN+ L+  LL   A+VN  D    + +H A   G +E ++ +L  GA+ +  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 163 IHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
             G   +H A++  G+           L ++K+LL H  D+N+ D
Sbjct: 59  KDGNTALHLAARN-GN-----------LEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 69  LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ 128
           LH  A+N  L   + +LE   D+      D  T LHLAA  GN+ ++  LL H A+VN++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD 162
           D +G++ +H A   G +E ++ +L  GA+ +  D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 35  LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
           L  AA+ G    VK +L    +          T LH  A N  L   + +LE   D + A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD 129
            D+DG T LHLAA  GN+ ++  LL H A++N +D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 38/258 (14%)

Query: 78  LSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE------ 131
           +   E I++   + I  + ++  TPL  A  +G+  ++   + H A++N  + +      
Sbjct: 14  IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLL 73

Query: 132 ------GHSVVHWATV-----------CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
                  H ++                C E + ++T+L  G + +  D      +HYA +
Sbjct: 74  TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIK 133

Query: 175 MCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA 234
                     D    L  +K+L  +  DVN+ D +G  PI  A      D I  L++ GA
Sbjct: 134 --------KGD----LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181

Query: 235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATT 294
                D +G + LH AA  G   C++ LI   G  +     NG + L  A+   H  +  
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAII--HNRSAI 238

Query: 295 LLLQYGATPNRQDRKGRT 312
            LL   A+ N QD  G T
Sbjct: 239 ELLINNASINDQDIDGST 256

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 9e-12
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 46/220 (20%)

Query: 47  VKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA 106
           +K IL    + V  +D   KT LHY  +   L   + + E   D +   D++G  P+H+A
Sbjct: 107 IKTILDCGID-VNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIA 164

Query: 107 AIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPS------- 159
                  +I  LL   A  N +DN G S +H A   G+   ++ ++  G           
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224

Query: 160 TP------------------------DIHGGYPIHYASQM-CGHASEMGNDVRVGLAVLK 194
           TP                        DI G  P+H+A    C             + ++ 
Sbjct: 225 TPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC------------DIDIID 272

Query: 195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA 234
           +LL+H  D+++ D  G  PI  A    + D ++  + A A
Sbjct: 273 ILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANA 312

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)

Query: 84  ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
           +  +    + A D DG  PLH AA  G+  ++  LLA  A+VN++D +G + +H A + G
Sbjct: 58  LKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG 117

Query: 144 E-----VEALETVLSAGAEPSTP---DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKV 195
                 +E  + +L AGA+       D  G  P+H+A+ + G A            ++++
Sbjct: 118 NPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA-LNGDA-----------DIVEL 165

Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
           LL    D N  +  G   +  AA  G  + +  L+  G ++     +
Sbjct: 166 LLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN-----TILSC 80
              ++G   L  AA +G D  VK +LAS  + V  +D    T LH  A N       +  
Sbjct: 68  ARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 81  AETILEVAP--DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHW 138
           A+ +LE     D+    DEDG TPLH AA+ G+  ++  LL   A+ NS+++ G + +  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 139 AT 140
           A 
Sbjct: 187 AA 188

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 173 SQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA 232
             +    + +       L +  ++  H       D DGR P+  AAS G    +  L+ +
Sbjct: 39  LNLYLELALLPAASLSELLLKLIVDRHL---AARDLDGRLPLHSAASKGDDKIVKLLLAS 95

Query: 233 GANVEAHDKDGLTALHCAASRGH-----RECLETLI--TLCGADVDVIDTNGCSALFYAV 285
           GA+V A D DG T LH AA  G+      E  + L+         ++ D +G + L +A 
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 286 TLGHADATTLLLQYGATPNRQDRKGRT 312
             G AD   LLL+ GA PN ++  G T
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVT 182

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRA--NVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           DG +P+ LA    +   I  L+ H A  +V   D E  S +H A   G+V+A+E +L  G
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE--SELHDAVEEGDVKAVEELLDLG 91

Query: 156 AEPSTPDI---HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
                 D+    G  P+H A+ +              L ++K+L+    D ++ + D   
Sbjct: 92  KFAD--DVFYKDGMTPLHLATIL------------KKLDIMKLLIARGADPDIPNTDKFS 137

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           P+  A   G    I  L+   A ++  D  G T L  A ++G     + L+   GA++D 
Sbjct: 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDY 196

Query: 273 IDTNGC-SALFYAVTLGHADATTLLLQYGATPN 304
              NGC +AL YA+     D   L ++ GA  N
Sbjct: 197 FGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 24/196 (12%)

Query: 29  MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA-----ENTILSCAET 83
           ++G T L   A+ G D E    L      V   DR   T LH  +     ++ ++    T
Sbjct: 305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVI----T 360

Query: 84  ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
           +LE+  + + A D    TP+H AA+  NV +I+TLL + A++ +   +  + +H+A +CG
Sbjct: 361 LLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA-LCG 418

Query: 144 E--VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV 201
                +++T++  GA  ++ +     P+HYA +          + +  L V+++LL +  
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK---------KNCK--LDVIEMLLDNGA 467

Query: 202 DVNVVDKDGRQPILWA 217
           DVN ++   + P+L A
Sbjct: 468 DVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 46/256 (17%)

Query: 78  LSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
           L  AE +LE   D + A D    TP+H AA  GN  +++ LL++ A+VN    +  SV+ 
Sbjct: 158 LLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 138 WATVCGEV--------------------------EALETVL---SAGAEPSTPDIHGGYP 168
            A     +                          E LET L    AG   ++ D     P
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP 276

Query: 169 IHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG-SSDAIL 227
           +H+ASQ    +            ++  LL    DVN  +  G  P+   A  G  ++ I 
Sbjct: 277 LHHASQAPSLSR-----------LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIR 325

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL--CGADVDVIDTNGCSALFYAV 285
            L+  GA+V A D+  +T LH A++    +  + +ITL   GA+V+  D    + + YA 
Sbjct: 326 TLIMLGADVNAADRLYITPLHQASTLDRNK--DIVITLLELGANVNARDYCDKTPIHYAA 383

Query: 286 TLGHADATTLLLQYGA 301
              +      LL YGA
Sbjct: 384 VRNNVVIINTLLDYGA 399

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 13/176 (7%)

Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQ-DNEGHSVVHWATVCGEVEALETVLSAGAEPS 159
           + LH A   G+V  +  LL      +     +G + +H AT+  +++ ++ +++ GA+P 
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 160 TPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS 219
            P+     P+H A         M  D++     +++L+ H   +++ D  G  P++ A +
Sbjct: 130 IPNTDKFSPLHLAV--------MMGDIKG----IELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 220 AGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
            G       L+ +GAN++   K+G  A  C A   ++  +  L    GAD +++  
Sbjct: 178 KGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFM 233

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ 306
           LH AA  G+ E ++ L+   GADV++ DT+  +AL  A   G+ +   LLL++GA  N +
Sbjct: 1   LHLAAKNGNLELVKLLLE-KGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 307 DRKGRT 312
           D+ G T
Sbjct: 58  DKDGNT 63

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 37/154 (24%)

Query: 179 ASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
            +  GN      A+L+ LL   +D ++ D  GR P+  AAS G  D +L L+K   NV  
Sbjct: 532 VASTGNA-----ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI 586

Query: 239 HDKDGLTAL----------------HC---------------AASRGHRECLETLITLCG 267
            D +G TAL                H                AA R     ++ L+   G
Sbjct: 587 RDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ-G 645

Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
            +VD  D  G +AL  A+   H D   LL+  GA
Sbjct: 646 LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.6 bits (144), Expect = 6e-10
 Identities = 61/241 (25%), Positives = 95/241 (39%), Gaps = 53/241 (21%)

Query: 72  CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE 131
           C E  ++   +TIL+   D +   D +  T LH A   G++  I  L  + A+VN +   
Sbjct: 101 CIEKDMI---KTILDCGID-VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE--- 153

Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA 191
                                         D +G YPIH A +   H             
Sbjct: 154 ------------------------------DDNGCYPIHIAIK---HNF---------FD 171

Query: 192 VLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
           ++K+LL      NV D +G  P+  AA  G    I  L+  G ++    K+G T LH A 
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI 231

Query: 252 SRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG-HADATTLLLQYGATPNRQDRKG 310
              +R  +E LI    A ++  D +G + L +A+      D   +LL + A  + +D KG
Sbjct: 232 IH-NRSAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKG 288

Query: 311 R 311
            
Sbjct: 289 E 289

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.6 bits (144), Expect = 6e-10
 Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 18/208 (8%)

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP--STPDI 163
           A + G + +   LL    N N +  +G S +  A    + EA++ ++  GA P    PDI
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN-VVDKDGRQPILWAASAGS 222
                +H        A E G+   V     + LL      + V  KDG  P+  A     
Sbjct: 69  ES--ELH-------DAVEEGDVKAV-----EELLDLGKFADDVFYKDGMTPLHLATILKK 114

Query: 223 SDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALF 282
            D +  L+  GA+ +  + D  + LH A   G  + +E LI    A +D+ D  GC+ L 
Sbjct: 115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLI 173

Query: 283 YAVTLGHADATTLLLQYGATPNRQDRKG 310
            A+  G      +LL  GA  +   + G
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNG 201

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 48/269 (17%)

Query: 69  LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA-------- 120
           LH   E   L   +++L    ++ +  D    TPLH+     N   +  ++         
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 121 ----------HRANV--------NSQDNEGHS-VVHWATVCG----EVEALETVLSAGAE 157
                     +  NV        N   N     +V+          E E  + +LS GA+
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 158 PSTPDIHGG-YPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW 216
            +  D H G   +HYA++          D R+     ++LL +  +VN+ DK    P+  
Sbjct: 160 INMKDRHKGNTALHYATE--------NKDQRL----TELLLSYGANVNIPDKTNNSPLHH 207

Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT- 275
           A    +   +  L++ GA+ +A DK G T LH +        +  L+   G DV+     
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPN 304
            G +AL    ++       LLL+YGA  N
Sbjct: 268 LGLTALH--SSIKSERKLKLLLEYGADIN 294

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 190 LAVLKVLLHHNV---DVNVVDKDGRQP-----------ILWAASAGSSDAILALVKAGAN 235
           + +LK  L H+    D+NV D  G              +L  AS G++  +  L+KA  +
Sbjct: 491 VVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLD 550

Query: 236 VEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTL 295
            +  D  G T LH AAS+G+ +C+  L+     +V + D NG +AL+ A++  H     +
Sbjct: 551 PDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKHHKIFRI 609

Query: 296 LLQYGATPN 304
           L  + +  +
Sbjct: 610 LYHFASISD 618

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           GR  +  AA +G  + +  L++ G ++   D+DG TALH AA  G+ E L+ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 22/281 (7%)

Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
            ++  + L  A        +KAI+ +R N  +      K + +   E ++L      L  
Sbjct: 208 ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLL------LYD 261

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVP-LIHTLLAHRANVNSQDNEGHSVVHWATVCG-EV 145
           A   + + D+   TPLH A+ A ++  L+  LL   A+VN+++ +G + ++     G + 
Sbjct: 262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDT 321

Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
           E + T++  GA+ +  D     P+H AS +     +   D+ +       LL    +VN 
Sbjct: 322 ENIRTLIMLGADVNAADRLYITPLHQASTL-----DRNKDIVI------TLLELGANVNA 370

Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA-ASRGHRECLETLIT 264
            D   + PI +AA   +   I  L+  GA++EA  +   TALH A         ++TLI 
Sbjct: 371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLID 430

Query: 265 LCGADVDVIDTNGCSALFYAVTLG-HADATTLLLQYGATPN 304
             GA+V+  + +  + L YA       D   +LL  GA  N
Sbjct: 431 R-GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN 470

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           D  G TPLH+AA  G    +  LL H  NV+ +D  G++ + W  +  +   +  +L   
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL-WNAISAKHHKIFRILYHF 613

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
           A  S P        H A  +   A++  +     L  +K LL   ++V+  D  G   + 
Sbjct: 614 ASISDP--------HAAGDLLCTAAKRND-----LTAMKELLKQGLNVDSEDHQGATALQ 660

Query: 216 WAASAGSSDAILALVKAGANVEAHDKD 242
            A +    D +  L+  GA+V+  + D
Sbjct: 661 VAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 49/182 (26%), Positives = 71/182 (39%), Gaps = 23/182 (12%)

Query: 92  IEAADED-GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
           I   D   G T LH A    +  L   LL++ ANVN  D   +S +H A        +  
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
           +L  GA     D  G  P+H +   C               +LK+LL H VDVN      
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYC-----------KDYDILKLLLEHGVDVNA----- 263

Query: 211 RQPIL----WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA-SRGHRECLETLIT- 264
           +  IL      +S  S   +  L++ GA++ + +   LT L  A            LI+ 
Sbjct: 264 KSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323

Query: 265 LC 266
           +C
Sbjct: 324 IC 325

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 20/214 (9%)

Query: 102 PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP 161
           PLH A  A N+ ++ +LL    NVN  D+   + +H          ++ ++ +  + S  
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV- 98

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV--DKDGRQPILWAAS 219
                Y +        +      +V +   +L     +   +++V  DK  +  I+    
Sbjct: 99  ----FYTLVAIKDAFNN-----RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDII---- 145

Query: 220 AGSSDAILALVKAGANVEAHDKDGL-TALHCAASRGHRECLETLITLCGADVDVIDTNGC 278
              ++    L+  GA++   D+    TALH A     +   E L+   GA+V++ D    
Sbjct: 146 --EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNN 202

Query: 279 SALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           S L +AV   +     +LL+ GA+ + +D+ G T
Sbjct: 203 SPLHHAVKHYNKPIVHILLENGASTDARDKCGNT 236

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 139 ATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLH 198
           A + GE++    +L  G  P+     G  PI  A +     SE           +K+L+ 
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF--RDSEA----------IKLLMK 56

Query: 199 HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV-EAHDKDGLTALHCAASRGHRE 257
           H    +V   D    +  A   G   A+  L+  G    +   KDG+T LH A      +
Sbjct: 57  HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLD 116

Query: 258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ++ LI   GAD D+ +T+  S L  AV +G      LL+ + A  + +D  G T
Sbjct: 117 IMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT 170

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA 250
           L H  +D+N  D +G  P+  AA  G+ + +  L+K G ++   D DGLTAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDV 203
           E+   E +L  GA+ +  DI+   PIHYA+       E GN   V L     LL +  DV
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAA-------ERGNAKMVNL-----LLSYGADV 204

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           N++  D    +  A  + + D I A++   +N+  +D   L A+         E LET +
Sbjct: 205 NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAI-------RNEDLETSL 257

Query: 264 TL--CGADVDVIDTNGCSALFYAV-TLGHADATTLLLQYGATPNRQDRKGRTYEY 315
            L   G  V+ ID    + L +A      +     LL+ GA  N ++ KG T  Y
Sbjct: 258 LLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLY 312

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLL 297
           G TALH AA  G  E ++ L+   G D++  D +G +AL  A   G+ +   LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 99  GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           G T LH AAI+G + L+  LL    ++N  D +G++ +H A   G +E L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN 130
           DG TPLHLAA  G++ ++  LL   A+VN++D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI---LWAASAGSSDAILALVKAGANVE 237
              ++V V    ++ LL    DVN   + G+ P+   L  +S    D +  L++AGA+V 
Sbjct: 20  LNASNVTVE--EVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN 77

Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL-FYAVTLG-HADATTL 295
           A ++ G T LH          +  L+   GADV+  D  G + L  Y      +     L
Sbjct: 78  APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRL 137

Query: 296 LLQYGATPNRQDRKGRT 312
           LL+ GA  N  D  G T
Sbjct: 138 LLRKGADVNALDLYGMT 154

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 18/174 (10%)

Query: 44  DAEVKAILASRPNAVRERDR-TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTP 102
           +AE+  +L S    +  +DR    T LHY  EN      E +L    + +   D+   +P
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSP 204

Query: 103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT-VCGEVEALETVLSAGAEPSTP 161
           LH A    N P++H LL + A+ +++D  G++ +H +   C + + L+ +L  G + +  
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK 264

Query: 162 D-IHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
             I G   +H + +     SE           LK+LL +  D+N ++     P+
Sbjct: 265 SYILGLTALHSSIK-----SE---------RKLKLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYA----- 172
           LL   A+VN++D    + +H+A   G  + +  +LS GA+ +   +     +  A     
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 173 -SQMCGHASEMGNDVRVGLAVLKVLLHHNVD-----------VNVVDKDGRQPILWAASA 220
              +        N  +  L++LK + + +++           VN +D     P+  A+ A
Sbjct: 224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA 283

Query: 221 GS-SDAILALVKAGANVEAHDKDGLTALHCAASRGH-RECLETLITLCGADVDVIDTNGC 278
            S S  +  L++ GA+V A +  G T L+  A  G+  E + TLI L GADV+  D    
Sbjct: 284 PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYI 342

Query: 279 SALFYAVTLG-HADATTLLLQYGATPNRQDRKGRT 312
           + L  A TL  + D    LL+ GA  N +D   +T
Sbjct: 343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKT 377

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 185 DVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG---SSDAILALVKAGANVEAHDK 241
           D +  L ++K+L+ +  D+N  + DG  P+    S G   + + +L +++ GA+    DK
Sbjct: 84  DYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK 143

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
           DG T L       H   +E +  L    VD+   N  +      TL
Sbjct: 144 DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI---NTHNNKEKYDTL 186

Length = 489

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 84  ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
           +LE  P  + A D +G TPLHLAA  G + L+  LL    ++N +D++G + +  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 178 HASEMGNDVRVG-LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV 236
               + + +  G L + + LL   ++ N    DG  PI  A     S+AI  L+K GA  
Sbjct: 2   DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP 61

Query: 237 EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
           +    D  + LH A   G  + +E L+ L     DV   +G + L  A  L   D   LL
Sbjct: 62  DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 297 LQYGATPN 304
           +  GA P+
Sbjct: 122 IARGADPD 129

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 10/130 (7%)

Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAAS-----AGSSDAILALVKAGANVEAHDKDGL 244
             ++K+ ++   +VN +D +   P+    S         D +  L++ GA++   + DG 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 245 TALHCAASRGHRECLETLITLC--GADVDVIDTNGCSALFYAVTLGHA---DATTLLLQY 299
           T L+C  S G+   LE L+ +   GAD  ++D +G + L   +   H    +   LLL+ 
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Query: 300 GATPNRQDRK 309
           G   N  + K
Sbjct: 171 GVDINTHNNK 180

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
           ++LL    D N  D DGR P+  A + G    +  L++ GA+    DKDG T L  A   
Sbjct: 99  RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN 158

Query: 254 GHRECLETLITLCGADVD 271
           G RE ++ L        +
Sbjct: 159 GFREVVQLLSRHSQCHFE 176

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVID 274
           DG T LH AA  GH E ++ L+   GADV+  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 19/113 (16%)

Query: 124 NVNSQDNEGHSVVHWATV--C-----GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC 176
           N+ +++     V H  TV  C     G+      +L+ GA+P+  D  G  P+H A    
Sbjct: 67  NLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN- 125

Query: 177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILAL 229
           GH           + V++VLL    D  ++DKDG+ P+  A   G  + +  L
Sbjct: 126 GH-----------VQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 229 LVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
           L++ G  ++ A D +G T LH AA  G  E ++ L+   G D+++ D++G +AL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
           DG TPLHLAA  GN+ L+  LL H A++N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
           DG TPLHLAA  GN+ ++  LL   A++N
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 17  ENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT 76
           E    +    + + G ++L  AA + ++ E+  +L +        D    T+LH  +   
Sbjct: 39  EPKKLNINCPDRL-GRSALFVAAIENENLELTELLLNLSCRGAVGD----TLLHAISLEY 93

Query: 77  ILSCAETI---LEVAPD---LIEAADED------GYTPLHLAAIAGNVPLIHTLLAHRAN 124
           + +    +   L        L  A D+       G T LHLAA   N  ++  LL   A+
Sbjct: 94  VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS 153

Query: 125 VN 126
           V 
Sbjct: 154 VP 155

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           A++G +     L+  GA+    D DG T LH A + GH + +  L+   GAD  ++D +G
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDG 148

Query: 278 CSALFYAVTLGHADATTLLLQY 299
            + L  A   G  +   LL ++
Sbjct: 149 KTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE--VEALETVLS 153
           D+DG  PLH+A+   N  ++  LL H A+ N+ D +  + +++ +   +  +E +  ++ 
Sbjct: 69  DDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ 128

Query: 154 AGAE-PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
            GA+  ++ D  G  P+      C   SE          V K ++    +  +VDK G+ 
Sbjct: 129 YGAKINNSVDEEGCGPL----LACTDPSER---------VFKKIMSIGFEARIVDKFGKN 175

Query: 213 PI---LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
            I   L + +  +S  I  ++K G +    D DG T LH   S+
Sbjct: 176 HIHRHLMSDNPKAS-TISWMMKLGISPSKPDHDGNTPLHIVCSK 218

Length = 446

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           GAD +  D +G + L  A   GH     +LL++GA P   D+ G+T
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKT 150

Length = 664

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
           D  GHS +++A     V  + T+L+AGA  +   +   +P+H A+ +         D ++
Sbjct: 27  DVHGHSALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATL--------EDTKI 76

Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL-TAL 247
               +K+LL   +D +  D  G   + +A  +G+   +   VK    +  + K G  T+ 
Sbjct: 77  ----VKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF 132

Query: 248 HCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
           + A        +   ++   +  D+     C  +   +  GH D   LLL Y  + N  +
Sbjct: 133 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSC--IHITIKNGHVDMMILLLDYMTSTNTNN 190

Length = 284

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 67  TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL 119
           T LH  A +  L   + +LE   D I   DEDG T LH+AA  GN+ ++  LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
           +G + L  A   GH +   LLL+ GA  N +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDV 272
           DG T LH AA  G+ E ++ L+   GAD++ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK-GADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 15/168 (8%)

Query: 85  LEVAPDLIEAADEDG-YTPLH-LAAIAG-NVPLIHTLLAHRANVNSQDNEGHSVVHWATV 141
           L+V  ++++A +  G Y  LH    I G +   +  LL    + N  D++G+  +H A+ 
Sbjct: 22  LDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASK 81

Query: 142 CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV 201
                 +  +L+ GA+P+  D     P++Y S         G D  V +  + +L+ +  
Sbjct: 82  INNNRIVAMLLTHGADPNACDKQHKTPLYYLS---------GTDDEV-IERINLLVQYGA 131

Query: 202 DV-NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
            + N VD++G  P+L A +  S      ++  G      DK G   +H
Sbjct: 132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIH 178

Length = 446

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
           L + K+ + +  D+N +D  GR  +  A  AG  D +  L++ GANV A   +G T L  
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260

Query: 250 AASRG 254
           A  RG
Sbjct: 261 AVDRG 265

Length = 437

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALV 230
           L ++K LL   VD+N  D+DG   +  AA  G+ + +  L+
Sbjct: 14  LELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
KOG0508|consensus	615		100.0
KOG0509|consensus	600		100.0
KOG0509|consensus	600		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	99.97
KOG0502|consensus	296		99.97
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.96
KOG0502|consensus	296		99.96
KOG0507|consensus	854		99.96
KOG4369|consensus	2131		99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0507|consensus	854		99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0505|consensus	527		99.95
KOG0505|consensus	527		99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0514|consensus	452		99.93
KOG4369|consensus	2131		99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0514|consensus	452		99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0512|consensus	228		99.87
KOG3676|consensus	782		99.87
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
KOG0195|consensus	448		99.85
KOG0512|consensus	228		99.85
KOG0195|consensus	448		99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG3676|consensus	782		99.73
KOG4214|consensus	117		99.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214|consensus	117		99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.58
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
KOG1710|consensus	396		99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
KOG0515|consensus	752		99.47
KOG1710|consensus	396		99.47
KOG0515|consensus	752		99.46
KOG0782|consensus	1004		99.21
KOG0506|consensus	622		99.1
PF13606	30	Ank_3: Ankyrin repeat	99.09
KOG0783|consensus	1267		99.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.07
KOG0818|consensus	669		99.04
KOG0506|consensus	622		98.99
PF13606	30	Ank_3: Ankyrin repeat	98.99
KOG0783|consensus	1267		98.96
KOG0818|consensus	669		98.87
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.87
KOG0782|consensus	1004		98.8
KOG0705|consensus	749		98.75
KOG3609|consensus	822		98.72
KOG0522|consensus	560		98.65
KOG2384|consensus	223		98.61
KOG0522|consensus	560		98.54
KOG3609|consensus	822		98.46
KOG0705|consensus	749		98.46
KOG2384|consensus	223		98.46
KOG0511|consensus	516		98.44
KOG0520|consensus	975		98.36
KOG0511|consensus	516		98.34
KOG0521|consensus	785		98.27
KOG0521|consensus	785		98.14
KOG0520|consensus	975		97.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.48
KOG2505|consensus	591		97.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.29
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.13
KOG2505|consensus	591		96.9
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.73
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.52
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.72
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.39
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.48

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-48  Score=330.54  Aligned_cols=269  Identities=25%  Similarity=0.332  Sum_probs=240.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCH
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV  112 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  112 (321)
                      ..|..|+..|+.+.++.|++.++..++..+..|.||||.|+..|+.+++++|++.|++ ++..+..|.|||++|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence            3578899999999999999888777777788889999999999999999999998887 577788888999999999999


Q ss_pred             HHHHHHHHcCC-----------------------CCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchh
Q psy138          113 PLIHTLLAHRA-----------------------NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPI  169 (321)
Q Consensus       113 ~~v~~Ll~~~~-----------------------~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l  169 (321)
                      +++++|+++|+                       +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+
T Consensus        82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpL  161 (434)
T PHA02874         82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI  161 (434)
T ss_pred             HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            88888887664                       4566778899999999999999999999999999999999999999


Q ss_pred             hhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHH
Q psy138          170 HYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC  249 (321)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  249 (321)
                      |+|+.            ....+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||.
T Consensus       162 h~A~~------------~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~  229 (434)
T PHA02874        162 HIAIK------------HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHN  229 (434)
T ss_pred             HHHHH------------CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence            99987            345789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          250 AASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG-HADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       250 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      |+..+. +.+++|+.  |++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|..|.||||++
T Consensus       230 A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        230 AIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             HHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            998765 56777774  8999999999999999999876 78999999999999999999999999875

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-47  Score=343.25  Aligned_cols=277  Identities=25%  Similarity=0.317  Sum_probs=251.0

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcc----------------
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL----------------   91 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----------------   91 (321)
                      +..|.||||+|++.|+.++++.|++.|.+ ++..+..|.||||.|+..++.+++++|++.+...                
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence            44599999999999999999999998866 7788889999999999999999988887765431                


Q ss_pred             ------------ccccCCCCCcHHHHHHHhCCH-HHHHHHHHcCCCCccCCCCCCcHHHHHHhcC-CHHHHHHHHHcCCC
Q psy138           92 ------------IEAADEDGYTPLHLAAIAGNV-PLIHTLLAHRANVNSQDNEGHSVVHWATVCG-EVEALETVLSAGAE  157 (321)
Q Consensus        92 ------------~~~~~~~~~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~i~~~L~~~~~~  157 (321)
                                  ++..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..| ..++++.|+..|++
T Consensus       254 ~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad  333 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD  333 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence                        345567899999999999986 6899999999999999999999999999999 69999999999999


Q ss_pred             CCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcc
Q psy138          158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE  237 (321)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  237 (321)
                      ++..+..|.||+|+|+...+           ..++++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       334 in~~d~~g~TpLh~A~~~~~-----------~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        334 VNAADRLYITPLHQASTLDR-----------NKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             CCCcccCCCcHHHHHHHhCC-----------cHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            99999999999999987533           3689999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcHHHHHHHcCC-HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCccce
Q psy138          238 AHDKDGLTALHCAASRGH-RECLETLITLCGADVDVIDTNGCSALFYAVTLG-HADATTLLLQYGATPNRQDRKGRTYEY  315 (321)
Q Consensus       238 ~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~ga~~~~~~~~g~t~l~  315 (321)
                      ..+..|.||||+|+..+. ..++++|++ .|++++.+|..|.||||+|+..+ +.+++++|+++||+++.+|..|.||++
T Consensus       403 ~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        403 ALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999987665 567899999 79999999999999999999877 689999999999999999999999998


Q ss_pred             ee
Q psy138          316 QW  317 (321)
Q Consensus       316 ~~  317 (321)
                      +.
T Consensus       482 ~a  483 (682)
T PHA02876        482 IA  483 (682)
T ss_pred             HH
Confidence            63

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=334.21  Aligned_cols=269  Identities=23%  Similarity=0.350  Sum_probs=254.0

Q ss_pred             cccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHH-----HHHcCcHHHHHHHHHhCCccccccCCC
Q psy138           24 KVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHY-----CAENTILSCAETILEVAPDLIEAADED   98 (321)
Q Consensus        24 ~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~-----A~~~~~~~~v~~Ll~~~~~~~~~~~~~   98 (321)
                      .......+.||||.|+..|+.+++++|++.|.. ++..+..+.||||+     |+..++.+++++|+++++++ +..+..
T Consensus        28 ~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~  105 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNN  105 (480)
T ss_pred             chhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCC
Confidence            334456799999999999999999999999865 78888899999999     99999999999999999984 888999


Q ss_pred             CCcHHHHHH--HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCchhhhHhh
Q psy138           99 GYTPLHLAA--IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG--EVEALETVLSAGAEPSTPDIHGGYPIHYASQ  174 (321)
Q Consensus        99 ~~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~  174 (321)
                      |.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++..+..|.||+|.|+.
T Consensus       106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~  185 (480)
T PHA03100        106 GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE  185 (480)
T ss_pred             CCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence            999999999  999999999999999999999999999999999999  9999999999999999999999999999998


Q ss_pred             hcccccccccchhhhHHHHHHHHHcCCCCcccCCCC------CchhHHHHhcCC--HHHHHHHHHcCCCcccccCCCCcH
Q psy138          175 MCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG------RQPILWAASAGS--SDAILALVKAGANVEAHDKDGLTA  246 (321)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~g~t~  246 (321)
                      .            .+.+++++|+++|++++..+..+      .||+|.|+..++  .+++++|+++|++++.+|..|.||
T Consensus       186 ~------------~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~Tp  253 (480)
T PHA03100        186 K------------GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTP  253 (480)
T ss_pred             h------------CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4            35899999999999999988888      899999999999  999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q psy138          247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD  307 (321)
Q Consensus       247 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~  307 (321)
                      ||+|+..|+.+++++|++ .|++++.+|..|.||+++|++.++.+++++|+++|++++..+
T Consensus       254 L~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        254 LHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence            999999999999999999 799999999999999999999999999999999999987644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.2e-47  Score=322.88  Aligned_cols=268  Identities=19%  Similarity=0.279  Sum_probs=235.0

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcC--cHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT--ILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      +.+|.||||+|++.|+.++++.|++.+.+ ++.+|..|.||||+|+..+  ..+++++|+++++++....+..|.|||+ 
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            45699999999999999999999998755 8899999999999998865  4899999999999855467889999997 


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccc
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE--VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG  183 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (321)
                      |+..++.+++++|+++|++++..+..|.||||+|+..++  .+++++|++.|++++..|..|.||||+|+...       
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~-------  219 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT-------  219 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-------
Confidence            667789999999999999999999999999999887554  68999999999999999999999999998642       


Q ss_pred             cchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC-HHHHHHHHHcCCCcc--------------------ccc-C
Q psy138          184 NDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS-SDAILALVKAGANVE--------------------AHD-K  241 (321)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~--------------------~~~-~  241 (321)
                         ..+.+++++|+. |++++..+..|.||||+|+..++ .+++++|+.+|++++                    ..+ .
T Consensus       220 ---~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~  295 (446)
T PHA02946        220 ---VKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQ  295 (446)
T ss_pred             ---CCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcc
Confidence               124688888885 89999999999999999999988 488999999886532                    111 3


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       242 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      .|.||||+|+..|+.+++++|++ +|.       .|.||||+|+..++.+++++|+.+|++++.+ ..|.||+|++
T Consensus       296 ~~~TpLh~Aa~~g~~eivk~Ll~-~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a  362 (446)
T PHA02946        296 YDSTDFKMAVEVGSIRCVKYLLD-NDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSEC  362 (446)
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHH-CCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHH
Confidence            57799999999999999999999 453       5789999999999999999999999999996 5899999985

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-46  Score=325.53  Aligned_cols=267  Identities=24%  Similarity=0.334  Sum_probs=139.5

Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcC---cHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC-CH
Q psy138           37 YAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG-NV  112 (321)
Q Consensus        37 ~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~-~~  112 (321)
                      .++..++.+++++|++.+.+ ++.++..|.||||+|+..+   +.+++++|++.|++ ++..+..|.||||+|+..| +.
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCcH
Confidence            34444555555555554433 4455555555555555554   55555555555554 3444445555555555555 35


Q ss_pred             HHHHHHHHcCCCCccCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhH
Q psy138          113 PLIHTLLAHRANVNSQDNEGHSVVHWAT--VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGL  190 (321)
Q Consensus       113 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (321)
                      +++++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++..+..|.||+|.++...          ....
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~----------~~~~  167 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR----------NANV  167 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC----------CCCH
Confidence            5555555555555555555555555555  233455555555555555555555555555544321          1124


Q ss_pred             HHHHHHHHcCCCCcccCCCCCchhHHHHhc--CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCH--HHHHHHHhhc
Q psy138          191 AVLKVLLHHNVDVNVVDKDGRQPILWAASA--GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR--ECLETLITLC  266 (321)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~  266 (321)
                      +++++|++.|.+++..+..|.||||.++..  +..++++.|+++|++++.+|..|.||||+|+..+..  .+++.|++ .
T Consensus       168 ~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~  246 (471)
T PHA03095        168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI-A  246 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH-c
Confidence            455555555555555555555555555442  444555555555555555555555555555555543  34444554 3


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       267 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      |++++.+|..|.||||+|+..|+.+++++|+++||+++.+|..|+||+|+
T Consensus       247 g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        247 GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL  296 (471)
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            55555555555555555555555555555555555555555555555554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=327.24  Aligned_cols=285  Identities=24%  Similarity=0.295  Sum_probs=255.7

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcC---CHHHHHHHHHcCCCcccccccCCccHHHHHHHcC-c
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENT-I   77 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~   77 (321)
                      ++++++|++.+.        +.+. .+..|.||||.|+..|   +.++++.|++.|.+ ++.++..|.||||+|+..| .
T Consensus        27 ~~~v~~Ll~~ga--------~vn~-~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         27 VEEVRRLLAAGA--------DVNF-RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHHHHHHHHcCC--------Cccc-CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCc
Confidence            356677776643        2222 2345999999999999   99999999998876 8889999999999999999 5


Q ss_pred             HHHHHHHHHhCCccccccCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC--CHHHHHHHHH
Q psy138           78 LSCAETILEVAPDLIEAADEDGYTPLHLAA--IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG--EVEALETVLS  153 (321)
Q Consensus        78 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~i~~~L~~  153 (321)
                      .+++++|++++.+ ++..+..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.+++++|++
T Consensus        97 ~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         97 LDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999988 6888999999999999  456899999999999999999999999999999876  6899999999


Q ss_pred             cCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH--HHHHHHHH
Q psy138          154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS--DAILALVK  231 (321)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~  231 (321)
                      .|+++...+..|.||+|.++...          ....++++.|++.|++++..+..|.||||+|+..|+.  .+++.|++
T Consensus       176 ~g~~~~~~d~~g~t~Lh~~~~~~----------~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~  245 (471)
T PHA03095        176 AGADVYAVDDRFRSLLHHHLQSF----------KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI  245 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHHHC----------CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH
Confidence            99999988999999999987642          2346899999999999999999999999999999875  57889999


Q ss_pred             cCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q psy138          232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR  308 (321)
Q Consensus       232 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~  308 (321)
                      .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|++.|++++..+.
T Consensus       246 ~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHH
Confidence            999999999999999999999999999999999 7999999999999999999999999999999999999865543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=316.79  Aligned_cols=267  Identities=21%  Similarity=0.261  Sum_probs=242.7

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcc----------------
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL----------------   91 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----------------   91 (321)
                      ..+|.||||.|++.|+.+++++|++.|.. ++..+..|.||||.|+..|+.+++++|++++.+.                
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            34589999999999999999999998876 7888889999999999999999999999987542                


Q ss_pred             ------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q psy138           92 ------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG  165 (321)
Q Consensus        92 ------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~  165 (321)
                            ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g  190 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG  190 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence                  34567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCc
Q psy138          166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT  245 (321)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  245 (321)
                      .||+|.|+..            ...+++++|++.|.+++..+..|.||||.|+..+. +.+++|+ .|++++.++..|.|
T Consensus       191 ~tpL~~A~~~------------g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~T  256 (434)
T PHA02874        191 ESPLHNAAEY------------GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGST  256 (434)
T ss_pred             CCHHHHHHHc------------CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCC
Confidence            9999999974            44799999999999999999999999999998765 5666666 68999999999999


Q ss_pred             HHHHHHHcC-CHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCC
Q psy138          246 ALHCAASRG-HRECLETLITLCGADVDVIDTNGCSALFYAVTLG-HADATTLLLQYGATPNRQDRKG  310 (321)
Q Consensus       246 ~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~ga~~~~~~~~g  310 (321)
                      |||+|+..+ +.+++++|++ .|++++.+|..|.|||++|++.+ ..++++.|+++++.++..+..+
T Consensus       257 pLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~  322 (434)
T PHA02874        257 PLHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLK  322 (434)
T ss_pred             HHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccc
Confidence            999999876 7899999999 79999999999999999999988 6789999999998776665544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.7e-46  Score=325.83  Aligned_cols=294  Identities=16%  Similarity=0.178  Sum_probs=231.7

Q ss_pred             ceehhhccCCCcccccCcccccccccccChhHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCc--H
Q psy138            3 DVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQ--GKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI--L   78 (321)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~   78 (321)
                      +++++|++.+.       .+.+...+..|.||||.|+..  ++.+++++|++.|.+ ++.+|..|.||||+|+..|+  .
T Consensus       156 eiVk~LLe~G~-------ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        156 DLIKYMVDVGI-------VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             HHHHHHHHCCC-------CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCH
Confidence            56777777631       333333345699999998754  678999999998866 89999999999999999995  5


Q ss_pred             HHHHHHHHhCCccccccCCCCCcHHHHH-------------------------------------HHhCCHHHHHHHHHc
Q psy138           79 SCAETILEVAPDLIEAADEDGYTPLHLA-------------------------------------AIAGNVPLIHTLLAH  121 (321)
Q Consensus        79 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~A-------------------------------------~~~~~~~~v~~Ll~~  121 (321)
                      +++++|+++|++ ++..+..|.||||+|                                     +..|+.+++++|+++
T Consensus       228 eIVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        228 SVIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            999999999998 788899999999975                                     345788999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccc--cccchhhhHHHHHHHH
Q psy138          122 RANVNSQDNEGHSVVHWATV--CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASE--MGNDVRVGLAVLKVLL  197 (321)
Q Consensus       122 ~~~~~~~~~~~~t~l~~a~~--~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  197 (321)
                      |++++.++..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||.++........  .......+.+++++|+
T Consensus       307 GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL  386 (764)
T PHA02716        307 GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI  386 (764)
T ss_pred             CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence            99999999999999999875  4688999999999999999999999999987642110000  0001134689999999


Q ss_pred             HcCCCCcccCCCCCchhHH----HHhcCCHHHHHHHHHcCCC--------------------------------------
Q psy138          198 HHNVDVNVVDKDGRQPILW----AASAGSSDAILALVKAGAN--------------------------------------  235 (321)
Q Consensus       198 ~~~~~~~~~~~~~~t~l~~----a~~~~~~~~~~~Ll~~~~~--------------------------------------  235 (321)
                      ++|++++..+..|.||||.    |...++.+++++|++.|+.                                      
T Consensus       387 ~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~  466 (764)
T PHA02716        387 SLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTD  466 (764)
T ss_pred             HCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhh
Confidence            9999999999999999994    2335678888888876532                                      


Q ss_pred             -----------------------cccccCCCCcHHHHHHHcCCH-----HHHHHHHhhcCCCcccCCCCCCcHHHHHHHc
Q psy138          236 -----------------------VEAHDKDGLTALHCAASRGHR-----ECLETLITLCGADVDVIDTNGCSALFYAVTL  287 (321)
Q Consensus       236 -----------------------~~~~~~~g~t~l~~a~~~~~~-----~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  287 (321)
                                             ++..|..|+||||+|+..|+.     +++++|++ .|++++.+|..|.||||+|+++
T Consensus       467 ~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~  545 (764)
T PHA02716        467 EYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRN  545 (764)
T ss_pred             hhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHc
Confidence                                   233356678888888877765     44588887 5888888888888888888887


Q ss_pred             CCH-----HHHHHHHHcCCCCCcc
Q psy138          288 GHA-----DATTLLLQYGATPNRQ  306 (321)
Q Consensus       288 ~~~-----~~~~~Ll~~ga~~~~~  306 (321)
                      |+.     ++++.|+++|++++..
T Consensus       546 g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        546 NRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             CCccccHHHHHHHHHhcCCCcchH
Confidence            755     7888888888877665

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-46  Score=336.35  Aligned_cols=276  Identities=27%  Similarity=0.330  Sum_probs=199.0

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHH-----------------------------------
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA-----------------------------------   73 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~-----------------------------------   73 (321)
                      ..|.||||.|++.|+.++|+.|++..|..+...|..|.||||.|+                                   
T Consensus        39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  118 (682)
T PHA02876         39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLD  118 (682)
T ss_pred             cccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHH
Confidence            348999999999999999999999999878888889999999666                                   


Q ss_pred             -----------------------------------HcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy138           74 -----------------------------------ENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL  118 (321)
Q Consensus        74 -----------------------------------~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  118 (321)
                                                         ..++.+++++|++.|.+ ++..+..|.||||+|+..|+.++|++|
T Consensus       119 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        119 EACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                                               45788999999999988 688899999999999999999999999


Q ss_pred             HHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHH-----------------------------cCCCCCCCCCCCCchh
Q psy138          119 LAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS-----------------------------AGAEPSTPDIHGGYPI  169 (321)
Q Consensus       119 l~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~-----------------------------~~~~~~~~~~~~~~~l  169 (321)
                      +++|++++..+..|.|||++|+..++.++++.|++                             .|++++..+..|.||+
T Consensus       198 L~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpL  277 (682)
T PHA02876        198 LSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL  277 (682)
T ss_pred             HHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            99999999999999999999999998888776654                             4556667778899999


Q ss_pred             hhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcC----------------------------
Q psy138          170 HYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG----------------------------  221 (321)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~----------------------------  221 (321)
                      |+|+.....           .+++++|++.|++++..+..|.||||.|+..|                            
T Consensus       278 h~Aa~~~~~-----------~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh  346 (682)
T PHA02876        278 HHASQAPSL-----------SRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH  346 (682)
T ss_pred             HHHHhCCCH-----------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHH
Confidence            999875321           23455555555555555555555555555544                            


Q ss_pred             -------CHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC-HHHH
Q psy138          222 -------SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH-ADAT  293 (321)
Q Consensus       222 -------~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~  293 (321)
                             ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..++ ..++
T Consensus       347 ~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~v  425 (682)
T PHA02876        347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSV  425 (682)
T ss_pred             HHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHH
Confidence                   3444444555555555555555555555555555555555555 455555555555555555554433 2345


Q ss_pred             HHHHHcCCCCCccCCCCCccceee
Q psy138          294 TLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       294 ~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++|+++|++++.+|..|+||||++
T Consensus       426 k~Ll~~gadin~~d~~G~TpLh~A  449 (682)
T PHA02876        426 KTLIDRGANVNSKNKDLSTPLHYA  449 (682)
T ss_pred             HHHHhCCCCCCcCCCCCChHHHHH
Confidence            556666666666666666666653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-45  Score=322.00  Aligned_cols=267  Identities=18%  Similarity=0.159  Sum_probs=231.0

Q ss_pred             HHcCCHHHHHHHHHcCCCccccc-ccCCccHHHHHHH--cCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC--HH
Q psy138           39 AQQGKDAEVKAILASRPNAVRER-DRTRKTVLHYCAE--NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN--VP  113 (321)
Q Consensus        39 ~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~--~~  113 (321)
                      .+.++.+++++|++.+..+++.+ +..|.||||.|+.  +++.+++++|+++|++ ++..+..|.||||+|+..|+  .+
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHH
Confidence            35688999999999984558887 8899999999864  4678999999999988 78889999999999999995  59


Q ss_pred             HHHHHHHcCCCCccCCCCCCcHHHHH-------------------------------------HhcCCHHHHHHHHHcCC
Q psy138          114 LIHTLLAHRANVNSQDNEGHSVVHWA-------------------------------------TVCGEVEALETVLSAGA  156 (321)
Q Consensus       114 ~v~~Ll~~~~~~~~~~~~~~t~l~~a-------------------------------------~~~~~~~i~~~L~~~~~  156 (321)
                      ++++|+++|++++.++..|.||||+|                                     +..|+.+++++|++.|+
T Consensus       229 IVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999999999999975                                     34577899999999999


Q ss_pred             CCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHh--------------cCC
Q psy138          157 EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS--------------AGS  222 (321)
Q Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--------------~~~  222 (321)
                      +++..|..|+||||+|+...          ..+.+++++|++.|++++.++..|.||||.|+.              .++
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~----------~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~  378 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRH----------NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR  378 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHh----------CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccCh
Confidence            99999999999999876421          123689999999999999999999999999875              368


Q ss_pred             HHHHHHHHHcCCCcccccCCCCcHHHH----HHHcCCHHHHHHHHhhcC-------------------------------
Q psy138          223 SDAILALVKAGANVEAHDKDGLTALHC----AASRGHRECLETLITLCG-------------------------------  267 (321)
Q Consensus       223 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~----a~~~~~~~~~~~Ll~~~~-------------------------------  267 (321)
                      .+++++|+++|++++.++..|.||||.    |...+..+++++|++. |                               
T Consensus       379 ~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~-~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~  457 (764)
T PHA02716        379 LDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD-KVLNMVKHRILQDLLIRVDDTPCIIHHIIAKY  457 (764)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC-cchhhhhhhhhhhhhhccCcchhhHHHHHHhc
Confidence            999999999999999999999999994    2335678888888772 2                               


Q ss_pred             ------------------------------CCcccCCCCCCcHHHHHHHcCCH-----HHHHHHHHcCCCCCccCCCCCc
Q psy138          268 ------------------------------ADVDVIDTNGCSALFYAVTLGHA-----DATTLLLQYGATPNRQDRKGRT  312 (321)
Q Consensus       268 ------------------------------~~~~~~~~~g~t~l~~A~~~~~~-----~~~~~Ll~~ga~~~~~~~~g~t  312 (321)
                                                    .+++..|..|+||||+|+..|+.     +++++|+++||+++.+|++|+|
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~T  537 (764)
T PHA02716        458 NIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVT  537 (764)
T ss_pred             CcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCC
Confidence                                          12355678899999999999876     4569999999999999999999


Q ss_pred             cceee
Q psy138          313 YEYQW  317 (321)
Q Consensus       313 ~l~~~  317 (321)
                      |||++
T Consensus       538 PLh~A  542 (764)
T PHA02716        538 PLMLT  542 (764)
T ss_pred             HHHHH
Confidence            99974

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.8e-45  Score=308.71  Aligned_cols=265  Identities=18%  Similarity=0.164  Sum_probs=232.8

Q ss_pred             ChhHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           31 GATSLMYAAQ--QGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        31 g~~~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      +.++||.++.  .++.++++.|++.+.+ ++.+|..|.||||+|++.|+.+++++|++++++ ++..|..|.||||+|+.
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~  114 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYS-PNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSG  114 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHH
Confidence            4689998774  3467899999998866 899999999999999999999999999999988 68889999999999988


Q ss_pred             hC--CHHHHHHHHHcCCCCcc-CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccc
Q psy138          109 AG--NVPLIHTLLAHRANVNS-QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND  185 (321)
Q Consensus       109 ~~--~~~~v~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (321)
                      .+  ..+++++|+++|++++. .+..|.|||+ |+..++.+++++|++.|++++..+..|.||+|.++...         
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~---------  184 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSD---------  184 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhc---------
Confidence            76  48999999999999995 6889999997 66679999999999999999999999999999887532         


Q ss_pred             hhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcC--CHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCC-HHHHHHH
Q psy138          186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG--SSDAILALVKAGANVEAHDKDGLTALHCAASRGH-RECLETL  262 (321)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~L  262 (321)
                       ....+++++|++.|++++..+..|.||||+|+..+  +.+++++|++ |++++.+|..|.||||+|+..++ .+++++|
T Consensus       185 -~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~L  262 (446)
T PHA02946        185 -NPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKL  262 (446)
T ss_pred             -CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHH
Confidence             22367899999999999999999999999999986  8899999885 89999999999999999999988 5899999


Q ss_pred             HhhcCCCcc--------------------cCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          263 ITLCGADVD--------------------VID-TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       263 l~~~~~~~~--------------------~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++ .|++++                    ..+ ..|.||||+|++.|+.+++++|+++|+       .|+||||++
T Consensus       263 l~-~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A  330 (446)
T PHA02946        263 LS-TSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYA  330 (446)
T ss_pred             Hh-CCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHH
Confidence            98 566432                    112 357799999999999999999999985       478999984

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-45  Score=318.43  Aligned_cols=262  Identities=26%  Similarity=0.366  Sum_probs=245.1

Q ss_pred             CHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH-----HHHhCCHHHHHH
Q psy138           43 KDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL-----AAIAGNVPLIHT  117 (321)
Q Consensus        43 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~-----A~~~~~~~~v~~  117 (321)
                      ..++++++++.+ ...+..+..+.||||.|+..++.+++++|+++|.+ ++..+..+.||||+     |+..++.+++++
T Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~   91 (480)
T PHA03100         14 KVKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKL   91 (480)
T ss_pred             HHHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHH
Confidence            346778888654 44667788999999999999999999999999988 67778889999999     999999999999


Q ss_pred             HHHcCCCCccCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHH
Q psy138          118 LLAHRANVNSQDNEGHSVVHWAT--VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKV  195 (321)
Q Consensus       118 Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (321)
                      |+++|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||+|.|+..+.          ...+++++
T Consensus        92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----------~~~~iv~~  161 (480)
T PHA03100         92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK----------IDLKILKL  161 (480)
T ss_pred             HHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC----------ChHHHHHH
Confidence            99999999999999999999999  9999999999999999999999999999999997431          15799999


Q ss_pred             HHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCC------CcHHHHHHHcCC--HHHHHHHHhhcC
Q psy138          196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDG------LTALHCAASRGH--RECLETLITLCG  267 (321)
Q Consensus       196 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~~~  267 (321)
                      |+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|      .||||.|+..++  .+++++|++ .|
T Consensus       162 Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g  240 (480)
T PHA03100        162 LIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YG  240 (480)
T ss_pred             HHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cC
Confidence            999999999999999999999999999999999999999999999888      899999999999  999999999 69


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       268 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++++.+|..|.||||+|+..++.+++++|+++||+++.+|..|.||++++
T Consensus       241 ~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        241 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999974

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-45  Score=314.73  Aligned_cols=268  Identities=23%  Similarity=0.237  Sum_probs=223.7

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      ..+.||||.|++.|+.+++++|++.+.+ ++.+|..|.||||+||..|+.++++.|++.+... .  ...+.+|++.|+.
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~--~~~~~~~l~~a~~  110 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-S--VFYTLVAIKDAFN  110 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-c--cccchhhHHHHHH
Confidence            3488999999999999999999998765 8899999999999999999999999999986542 1  2567899999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhc--CCHHHHHHHHHcCCCCCCCCCC-CCchhhhHhhhcccccccccc
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC--GEVEALETVLSAGAEPSTPDIH-GGYPIHYASQMCGHASEMGND  185 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~--~~~~i~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~  185 (321)
                      .++.+++++|+..+.+......  ...+......  ...+++++|+++|++++..+.. |.||||+|+.           
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~-----------  177 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATE-----------  177 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHh-----------
Confidence            9999999999987543221110  0111111112  2345899999999999988888 9999999887           


Q ss_pred             hhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHc-CCHHHHHHHHh
Q psy138          186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR-GHRECLETLIT  264 (321)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~  264 (321)
                       ..+.+++++|+++|++++..+..|.||||.|+..++.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++
T Consensus       178 -~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~  256 (477)
T PHA02878        178 -NKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLE  256 (477)
T ss_pred             -CCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH
Confidence             3457899999999999999999999999999999999999999999999999999999999999875 68899999998


Q ss_pred             hcCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          265 LCGADVDVIDT-NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       265 ~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                       .|++++.++. .|.||||+|  .++.+++++|+++|||++.+|..|.||||++
T Consensus       257 -~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A  307 (477)
T PHA02878        257 -HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSA  307 (477)
T ss_pred             -cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence             6999998876 799999999  5678899999999999999999999999874

>KOG0510|consensus

Probab=100.00  E-value=8.7e-44  Score=300.51  Aligned_cols=275  Identities=27%  Similarity=0.378  Sum_probs=208.9

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.+|||.|++.+..+.++.|++.+.+ ...++..+.+|+|+|+..+++++++.|++++.+ ++..++.+.||||.||
T Consensus        85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~  162 (929)
T KOG0510|consen   85 DSADNTPLHAAVEYNQGDKIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAA  162 (929)
T ss_pred             hcccCchhHHHhhcchHHHHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHH
Confidence            45689999999999999999999998876 788899999999999999999999999999977 7999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHH-----cCCCCCCCCCCCCchhhhHhhhccccccc
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS-----AGAEPSTPDIHGGYPIHYASQMCGHASEM  182 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  182 (321)
                      ..++.|..+.|++.|+++...+.+|.+|+|.|+..|..+.++.++.     ++..++..+..+.+|+|.|...       
T Consensus       163 ~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~-------  235 (929)
T KOG0510|consen  163 RKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG-------  235 (929)
T ss_pred             hcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc-------
Confidence            9999998899999999999999999999999999999999999998     6777888899999999999873       


Q ss_pred             ccchhhhHHHHHHHHHcCCC---------------CcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHH
Q psy138          183 GNDVRVGLAVLKVLLHHNVD---------------VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL  247 (321)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  247 (321)
                           ..++.++.+++.|..               ++..|.+|.||||+|++.|+.+.++.|+..|++++.+++++.|||
T Consensus       236 -----g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spL  310 (929)
T KOG0510|consen  236 -----GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPL  310 (929)
T ss_pred             -----CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCch
Confidence                 335666666665432               234456667777777777777777777777777666666666666


Q ss_pred             HHHHHcCCHHHHHHHHh-hcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---ccCCCCCcccee
Q psy138          248 HCAASRGHRECLETLIT-LCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN---RQDRKGRTYEYQ  316 (321)
Q Consensus       248 ~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~---~~~~~g~t~l~~  316 (321)
                      |.|+.+|+.++++-|++ ......|..|..|.||||+|++.|+..++++|++.||...   ..|++|.||||.
T Consensus       311 H~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             HHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH
Confidence            66666666666655555 2223344444444455554444444444444444444433   234444444443

>KOG0510|consensus

Probab=100.00  E-value=1.7e-43  Score=298.82  Aligned_cols=273  Identities=27%  Similarity=0.393  Sum_probs=252.1

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .++.+|+|+|+..|....++.|++.+ .+++..|..|.||||.||..++.|..+.|++.+++ +...+.+|.+|+|.|++
T Consensus       119 ~~~~aplh~A~~~~~~s~L~~Ll~~~-~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~  196 (929)
T KOG0510|consen  119 LNKNAPLHLAADSGNYSCLKLLLDYG-ADVNLEDENGFTPLHLAARKNKVEAKKELINKGAD-PCKSDIDGNFPIHEAAR  196 (929)
T ss_pred             hhccCchhhccccchHHHHHHHHHhc-CCccccccCCCchhhHHHhcChHHHHHHHHhcCCC-CCcccCcCCchHHHHHH
Confidence            45889999999999999999999988 55999999999999999999999988999999988 68889999999999999


Q ss_pred             hCCHHHHHHHHH-----cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---------------CCCCCCCCch
Q psy138          109 AGNVPLIHTLLA-----HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP---------------STPDIHGGYP  168 (321)
Q Consensus       109 ~~~~~~v~~Ll~-----~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~---------------~~~~~~~~~~  168 (321)
                      .|..++.+..+.     ++..++..+..+.||||.|+..|+.++++.+++.|...               +..|..|.||
T Consensus       197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            999999999998     56778888999999999999999999999999987643               3357889999


Q ss_pred             hhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHH-cC-CCcccccCCCCcH
Q psy138          169 IHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK-AG-ANVEAHDKDGLTA  246 (321)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~-~~~~~~~~~g~t~  246 (321)
                      +|+|++            ++..+.++.|+..|++++.++.++.||||.|++.|+.+.++.|++ .| ..++..|-.|.||
T Consensus       277 LH~a~r------------~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tp  344 (929)
T KOG0510|consen  277 LHYAAR------------QGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTP  344 (929)
T ss_pred             HHHHHH------------cCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCc
Confidence            999998            445799999999999999999999999999999999999999998 44 4567788999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCcc---cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          247 LHCAASRGHRECLETLITLCGADVD---VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       247 l~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      ||.|++.|+..+++.|++ .|+...   ..|.+|.||||+|+++|+...+++|+.+||++..+|+.|.+++++
T Consensus       345 LHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  345 LHLAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            999999999999999999 699887   569999999999999999999999999999999999999999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=301.52  Aligned_cols=280  Identities=18%  Similarity=0.261  Sum_probs=234.6

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcC--CHHHHHHHHHcCCCcccccccCCccHHHHHHHc----
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQG--KDAEVKAILASRPNAVRERDRTRKTVLHYCAEN----   75 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~----   75 (321)
                      +|++++|++++        .+.+..  .+|.|+||.++..+  +.++++.|++.|.+ ++.++ .+.||||.|+..    
T Consensus        16 ~~~v~~LL~~G--------advN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~   83 (494)
T PHA02989         16 KNALEFLLRTG--------FDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREIT   83 (494)
T ss_pred             HHHHHHHHHcC--------CCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcc
Confidence            35677777774        333333  35888887766554  68999999998876 77665 578999999865    


Q ss_pred             --CcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCC-ccCCCCCCcHHHHHHhc--CCHHH
Q psy138           76 --TILSCAETILEVAPDLIEAADEDGYTPLHLAAIA---GNVPLIHTLLAHRANV-NSQDNEGHSVVHWATVC--GEVEA  147 (321)
Q Consensus        76 --~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~-~~~~~~~~t~l~~a~~~--~~~~i  147 (321)
                        ++.+++++|+++|++ ++..+..|.||||.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.++
T Consensus        84 ~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~i  162 (494)
T PHA02989         84 SNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDV  162 (494)
T ss_pred             hhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHH
Confidence              457899999999988 688899999999988765   6799999999999999 78899999999998764  68899


Q ss_pred             HHHHHHcCCCCCC-CCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc------
Q psy138          148 LETVLSAGAEPST-PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA------  220 (321)
Q Consensus       148 ~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~------  220 (321)
                      +++|+++|++++. .+..|.||++.+++....        ..+.+++++|+++|++++..+..+.+++|.++..      
T Consensus       163 v~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~--------~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~  234 (494)
T PHA02989        163 IKILLSFGVNLFEKTSLYGLTPMNIYLRNDID--------VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSK  234 (494)
T ss_pred             HHHHHHcCCCccccccccCCChHHHHHhcccc--------cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcc
Confidence            9999999999987 678899999988764211        3458999999999999999998899999987654      


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      +..+++++|+ .|++++.+|..|.||||+|+..++.+++++|++ .|+|++.+|..|.||||+|+..++.+++++|++.+
T Consensus       235 ~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        235 KEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             cchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            3567777765 469999999999999999999999999999999 69999999999999999999999999999999988


Q ss_pred             CCCC
Q psy138          301 ATPN  304 (321)
Q Consensus       301 a~~~  304 (321)
                      ++..
T Consensus       313 p~~~  316 (494)
T PHA02989        313 PGKY  316 (494)
T ss_pred             CChH
Confidence            6543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=275.76  Aligned_cols=235  Identities=13%  Similarity=0.133  Sum_probs=205.2

Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q psy138           41 QGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA  120 (321)
Q Consensus        41 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  120 (321)
                      .++.++++.|++.+.   +.+|..|.||||+|+..|+.+++++|++.++. .+..  ++.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~~~~Lis~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-~n~~--d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDA---FKADVHGHSALYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-CcCC--CCCCHHHHHHHCCCHHHHHHHHH
Confidence            567888998888765   35788999999999999999999999999876 3433  47899999999999999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CchhhhHhhhcccccccccchhhhHHHHHHHHHc
Q psy138          121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG-GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH  199 (321)
Q Consensus       121 ~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (321)
                      +|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .||+++|+.            ..+.+++++|+++
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~------------~g~~eivk~LL~~  150 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM------------LNDVSIVSYFLSE  150 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHH------------cCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999998888887 489999887            3447899999998


Q ss_pred             CCCCcccC-CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHhhcCCCcccCCCCC
Q psy138          200 NVDVNVVD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA-LHCAASRGHRECLETLITLCGADVDVIDTNG  277 (321)
Q Consensus       200 ~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  277 (321)
                      +.+.  .+ ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|++ +|++++.+|..|
T Consensus       151 ~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~  227 (284)
T PHA02791        151 IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN  227 (284)
T ss_pred             CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC
Confidence            6543  22 247899999999999999999999999999999888876 999999999999999999 799999999854


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy138          278 CSALFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       278 ~t~l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                       +|+      ++.|++++||++-++.
T Consensus       228 -~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        228 -VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             -ccC------CCHHHHHHHHHhhhhh
Confidence             554      8899999999987654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-42  Score=300.19  Aligned_cols=261  Identities=18%  Similarity=0.203  Sum_probs=229.1

Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCccHHHHHHHc--CcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC------CH
Q psy138           41 QGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN--TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG------NV  112 (321)
Q Consensus        41 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~------~~  112 (321)
                      ..+.++++.||+.|.+ ++.. ..|.||||.++..  ++.+++++|+++|++ ++..+ .+.||||.|+..+      +.
T Consensus        13 ~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            4778999999998876 7776 5789999876654  378999999999998 45554 5689999998754      47


Q ss_pred             HHHHHHHHcCCCCccCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          113 PLIHTLLAHRANVNSQDNEGHSVVHWATVC---GEVEALETVLSAGAEP-STPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       113 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~i~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      +++++|+++|++++..+..|.|||+.|+..   ++.+++++|+++|+++ +..+..|.||+|+++...          ..
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~----------~~  158 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESF----------SV  158 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhc----------cC
Confidence            899999999999999999999999988765   6799999999999999 889999999999987532          23


Q ss_pred             hHHHHHHHHHcCCCCcc-cCCCCCchhHHHHhcC----CHHHHHHHHHcCCCcccccCCCCcHHHHHHHc------CCHH
Q psy138          189 GLAVLKVLLHHNVDVNV-VDKDGRQPILWAASAG----SSDAILALVKAGANVEAHDKDGLTALHCAASR------GHRE  257 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~------~~~~  257 (321)
                      +.+++++|+++|++++. .+..|.||||.|++.+    +.+++++|+++|++++..+..+.||+|.++..      +..+
T Consensus       159 ~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~  238 (494)
T PHA02989        159 KKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFK  238 (494)
T ss_pred             CHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchH
Confidence            47899999999999998 5788999999998764    89999999999999999999999999987654      3567


Q ss_pred             HHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++++|+.  +++++.+|..|.||||+|+..++.+++++|+++|||++.+|..|+||||++
T Consensus       239 il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        239 VLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             HHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            8888765  799999999999999999999999999999999999999999999999985

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-42  Score=273.32  Aligned_cols=225  Identities=16%  Similarity=0.146  Sum_probs=182.1

Q ss_pred             cCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHc
Q psy138           75 NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA  154 (321)
Q Consensus        75 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~  154 (321)
                      .++.+++++|+++++.   ..|.+|.||||+|+..|+.+++++|+++|++++..  .+.||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            4677888888887653   46778888888888888888888888888877765  367888888888888888888888


Q ss_pred             CCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCC-CchhHHHHhcCCHHHHHHHHHcC
Q psy138          155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG-RQPILWAASAGSSDAILALVKAG  233 (321)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~  233 (321)
                      |++++..+..|.||+|+|+.            ..+.+++++|+++|++++..+..| .||||.|+..|+.+++++|++++
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~------------~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~  151 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVD------------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  151 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHH------------cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence            88888888888888888887            344788888888888888777776 47888888888888888888876


Q ss_pred             CCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q psy138          234 ANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA-LFYAVTLGHADATTLLLQYGATPNRQDRKGR  311 (321)
Q Consensus       234 ~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~  311 (321)
                      .+.  .+ ..|.||||+|+..|+.+++++|++ +|++++.++..|.|| ||+|+..|+.+++++|+++||+++.+|..| 
T Consensus       152 ~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-  227 (284)
T PHA02791        152 PST--FDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-  227 (284)
T ss_pred             Ccc--cccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-
Confidence            543  22 247888888888888888888888 688888888888876 888888888888888888888888888855 


Q ss_pred             ccceeeccc
Q psy138          312 TYEYQWRSV  320 (321)
Q Consensus       312 t~l~~~~~~  320 (321)
                      +||+.|+.|
T Consensus       228 ~~l~~~e~~  236 (284)
T PHA02791        228 VLLDDAEIA  236 (284)
T ss_pred             ccCCCHHHH
Confidence            888777643

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-42  Score=293.58  Aligned_cols=254  Identities=19%  Similarity=0.260  Sum_probs=188.0

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      ..++||.|++.|+.+++++|++.|.+ ++.++..|.||||+|+..|+.+++++|+++++. ++..+..+.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCC
Confidence            46788888888888888888887655 666777788888888888888888888888776 4556667788888888888


Q ss_pred             CHHHHHHHHHcCCCCc-cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhh
Q psy138          111 NVPLIHTLLAHRANVN-SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG  189 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  189 (321)
                      +.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+|.|+..            .+
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~------------~~  147 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM------------GD  147 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc------------CC
Confidence            8888888888877653 3456688888888888888888888888888877777777777777753            33


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCC-CcHHHHHHHcCCHHHHHHHHhhcCC
Q psy138          190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDG-LTALHCAASRGHRECLETLITLCGA  268 (321)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~  268 (321)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .||+|+|+..++.+++++|++ .|+
T Consensus       148 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~ga  226 (413)
T PHA02875        148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGA  226 (413)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCc
Confidence            567777777777777777777777777777777777777777777777766555 366777777777777777777 577


Q ss_pred             CcccC---CCCCCcHHHHHHH---cCCHHHHHHHHHc
Q psy138          269 DVDVI---DTNGCSALFYAVT---LGHADATTLLLQY  299 (321)
Q Consensus       269 ~~~~~---~~~g~t~l~~A~~---~~~~~~~~~Ll~~  299 (321)
                      +++..   +..+.||+++++.   ....+.++.++.+
T Consensus       227 d~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~~  263 (413)
T PHA02875        227 DCNIMFMIEGEECTILDMICNMCTNLESEAIDALIAD  263 (413)
T ss_pred             CcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHHHH
Confidence            77654   4566777776543   2344566666543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=293.52  Aligned_cols=266  Identities=18%  Similarity=0.249  Sum_probs=234.1

Q ss_pred             cChhHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCccHHHHHHHc-----CcHHHHHHHHHhCCccccccCCCCCcH
Q psy138           30 EGATSLMYAAQQ--GKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN-----TILSCAETILEVAPDLIEAADEDGYTP  102 (321)
Q Consensus        30 ~g~~~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~t~  102 (321)
                      .|.|+++.+...  ++.++++.|++.|.+ ++.++..|.||||.|+..     +..+++++|+++|++ ++..+..|.||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~Tp  112 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-INKKNSDGETP  112 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcH
Confidence            366777645544  478999999998876 899999999999999864     679999999999998 78899999999


Q ss_pred             HHHHHHhC---CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC---HHHHHHHHHcCCCCCCCC-CCCCchhhhHhhh
Q psy138          103 LHLAAIAG---NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE---VEALETVLSAGAEPSTPD-IHGGYPIHYASQM  175 (321)
Q Consensus       103 l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~---~~i~~~L~~~~~~~~~~~-~~~~~~l~~~~~~  175 (321)
                      ||+|+..+   +.+++++|+++|++++..+..|.||||+|+..++   .+++++|++.|++++..+ ..+.+|+|.+...
T Consensus       113 Lh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        113 LYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             HHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence            99999975   7899999999999999999999999999999988   999999999999998875 5788999987653


Q ss_pred             cccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhH-------HHHhcCCHHHHHHHHHcCCCcccccCCCCcHHH
Q psy138          176 CGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL-------WAASAGSSDAILALVKAGANVEAHDKDGLTALH  248 (321)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~-------~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  248 (321)
                      ...        ..+.+++++|+++|++++..+..+.++++       .+...+..+++++|+. ++++|.+|..|.||||
T Consensus       193 ~~~--------~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~  263 (489)
T PHA02798        193 NID--------RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLY  263 (489)
T ss_pred             ccc--------cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHH
Confidence            211        34579999999999999998888888876       2345567788888765 6999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q psy138          249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD  307 (321)
Q Consensus       249 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~  307 (321)
                      +|+..|+.+++++|++ .|+|++.+|..|.|||++|++.++.++++.|+++|++++...
T Consensus       264 ~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~  321 (489)
T PHA02798        264 YSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTIS  321 (489)
T ss_pred             HHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHH
Confidence            9999999999999999 799999999999999999999999999999999999987543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=284.43  Aligned_cols=239  Identities=25%  Similarity=0.304  Sum_probs=222.2

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      .+++||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            46899999999999999999999987 57778899999999999999999999999999999888899999999999999


Q ss_pred             HHHHHHHHHcCCCCC-CCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH
Q psy138          145 VEALETVLSAGAEPS-TPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS  223 (321)
Q Consensus       145 ~~i~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  223 (321)
                      .+++++|++.|.... ..+..|.||+|.|+.            ..+.+++++|++.|++++..+..|.||||.|+..|+.
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~------------~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATI------------LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHH------------hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            999999999998764 456779999999997            3457999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGC-SALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       224 ~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+..++.+++++|+++||+
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence            99999999999999999999999999999999999999999 7999999998874 889999999999999999999999


Q ss_pred             CCcc---CCCCCccceee
Q psy138          303 PNRQ---DRKGRTYEYQW  317 (321)
Q Consensus       303 ~~~~---~~~g~t~l~~~  317 (321)
                      ++..   +..|.||++..
T Consensus       228 ~n~~~~~~~~~~t~l~~~  245 (413)
T PHA02875        228 CNIMFMIEGEECTILDMI  245 (413)
T ss_pred             cchHhhcCCCchHHHHHH
Confidence            9876   66788998753

>KOG4412|consensus

Probab=100.00  E-value=4.4e-42  Score=239.94  Aligned_cols=207  Identities=30%  Similarity=0.440  Sum_probs=163.9

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDR-TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA  109 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  109 (321)
                      +.++.+.++......-++.++++.+..++.++. +|+|||||||..|+.+++++|+......++..|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            567889999999999999999999877777665 9999999999999999999999866666788899999999999999


Q ss_pred             CCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          110 GNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       110 ~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      |+.++|+-|+.+ |++++..+..|+||||+|+..|+++|+++|+++|+.+...|..|.||+|.|+.            ..
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa------------vG  150 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA------------VG  150 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHh------------cc
Confidence            999999999998 99999999999999999999999999999999988887777776666666554            23


Q ss_pred             hHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Q psy138          189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA  250 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a  250 (321)
                      +++++++|+..++.+|.+|..|+||||.|...|+.++...|+++|+++...|++| ||+..|
T Consensus       151 klkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  151 KLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             chhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHH
Confidence            3555555555555555555555555555555555555555555555555555555 555444

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=291.67  Aligned_cols=288  Identities=17%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             ccccChhHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCccHHHHHHHcC---------------------------
Q psy138           27 NTMEGATSLMYAAQQ---GKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---------------------------   76 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~---------------------------   76 (321)
                      .+.+|.||||+|+..   |+.++++.||+.+.+ ++.++..|.||||+|+..|                           
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~  106 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIF  106 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchH
Confidence            355699999997655   889999999988765 6788889999999887654                           


Q ss_pred             --------cHHHHHHHHHhCCccccccCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCccCCC---CC-----------
Q psy138           77 --------ILSCAETILEVAPDLIEAADEDGYTPLHLAA--IAGNVPLIHTLLAHRANVNSQDN---EG-----------  132 (321)
Q Consensus        77 --------~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~~~~~~~~~~~---~~-----------  132 (321)
                              +.+++++|+++|.+ ++..+..|.||||+|+  ..|+.+++++|+++|++++..+.   .|           
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence                    34666667777766 5777889999999654  46899999999999999986543   23           


Q ss_pred             CcHHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc------------------c--
Q psy138          133 HSVVHWATV-----------CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS------------------E--  181 (321)
Q Consensus       133 ~t~l~~a~~-----------~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------~--  181 (321)
                      .||||+|+.           .++.+++++|+++|++++..+..|.||||+|+..+....                  .  
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~  265 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDL  265 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCc
Confidence            599999986           468899999999999999999999999999987542100                  0  


Q ss_pred             ccc---------------chhhhHHHHHHHHHcCCCCcc-------cCC------------CCCchhHH---HHhcCC--
Q psy138          182 MGN---------------DVRVGLAVLKVLLHHNVDVNV-------VDK------------DGRQPILW---AASAGS--  222 (321)
Q Consensus       182 ~~~---------------~~~~~~~~~~~l~~~~~~~~~-------~~~------------~~~t~l~~---a~~~~~--  222 (321)
                      .+.               ......+++++|++.|++...       ...            .+.+++|.   ++..|.  
T Consensus       266 ~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  345 (661)
T PHA02917        266 TCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDID  345 (661)
T ss_pred             ccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCc
Confidence            000               001245667777777764321       111            12223222   223444  


Q ss_pred             HHHHHHHHHcCCCc------------------------------ccccCCCCcHHHHHHHcC------------------
Q psy138          223 SDAILALVKAGANV------------------------------EAHDKDGLTALHCAASRG------------------  254 (321)
Q Consensus       223 ~~~~~~Ll~~~~~~------------------------------~~~~~~g~t~l~~a~~~~------------------  254 (321)
                      .+++++|++.|+++                              +..+.+|.||||.|++.+                  
T Consensus       346 ~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~  425 (661)
T PHA02917        346 IPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDM  425 (661)
T ss_pred             HHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchh
Confidence            34666666666653                              334456899999987543                  


Q ss_pred             -----CHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          255 -----HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       255 -----~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                           ..+++++|++ +|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+.
T Consensus       426 ~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        426 SYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             hhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence                 3567899999 7999999999999999999999999999999999999999999999999975

>KOG0508|consensus

Probab=100.00  E-value=3.5e-41  Score=268.63  Aligned_cols=195  Identities=22%  Similarity=0.372  Sum_probs=175.3

Q ss_pred             ccccccccChhHHHHHHHcCCHHHHHHHHHcCCCccc--------ccccCCccHHHHHHHcCcHHHHHHHHHhCCccccc
Q psy138           23 KKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVR--------ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA   94 (321)
Q Consensus        23 ~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~--------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~   94 (321)
                      ..+....+|.|||.+||++|+.++|++|++.....+.        .....|.+||..|+..||+++|+.|+++++. ++.
T Consensus        34 ~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~-VN~  112 (615)
T KOG0508|consen   34 SLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS-VND  112 (615)
T ss_pred             HHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc-ccc
Confidence            3344456799999999999999999999996654433        3456788999999999999999999999977 677


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhh
Q psy138           95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ  174 (321)
Q Consensus        95 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~  174 (321)
                      ......|||-.||..|+++++++|+++|++++..+..|+|+|+.|+.+|+.+|+++|++.|++++.++..|.|+||.++.
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caE  192 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAE  192 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhh
Confidence            77788899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHH
Q psy138          175 MCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK  231 (321)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  231 (321)
                                  ..+++++++|+++|+.++. +..|.|||..|...|+.++|++|++
T Consensus       193 ------------sG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  193 ------------SGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ------------cccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence                        5569999999999998765 4559999999999999999999884

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.7e-40  Score=282.99  Aligned_cols=282  Identities=17%  Similarity=0.156  Sum_probs=231.1

Q ss_pred             cccccChhHHHHHHHcC---CHHHHHHHHHcCCCcccccccCCccHHHHHHHcC--cHHHHHHHHHhCCcc-ccccCCCC
Q psy138           26 HNTMEGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENT--ILSCAETILEVAPDL-IEAADEDG   99 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~-~~~~~~~~   99 (321)
                      ..+.+|.||||+|+..|   +.++++.||+.|.+ ++.+|..|.||||+|+..+  +.|++++|++.+... ++..+..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            34566999999999997   58999999988766 8899999999999999977  799999999996531 35566678


Q ss_pred             CcHHHHHHH--hCCHHHHHHHHH-cCCCCccCCC-----CCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-------CCCC
Q psy138          100 YTPLHLAAI--AGNVPLIHTLLA-HRANVNSQDN-----EGHSVVHWATVCGEVEALETVLSAGAEPST-------PDIH  164 (321)
Q Consensus       100 ~t~l~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~-----~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~-------~~~~  164 (321)
                      .+||+.++.  .++.+++++|++ .+.+++....     .|.+|++++...++.+++++|+++|++++.       .+..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            899999988  788999999997 6778776532     789999999999999999999999999852       2333


Q ss_pred             CCc-hhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH--HHhcCCHHHHHHHHH----------
Q psy138          165 GGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW--AASAGSSDAILALVK----------  231 (321)
Q Consensus       165 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~--a~~~~~~~~~~~Ll~----------  231 (321)
                      ..+ .|++.......      ....+.+++++|+++|++++.++..|.||||+  +...|+.|++++|++          
T Consensus       195 ~c~~~l~~~il~~~~------~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        195 RCKNSLHYYILSHRE------SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             ccchhHHHHHHhhhh------hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            333 34433332111      23567899999999999999999999999995  556678999999999          


Q ss_pred             ----------------------cCCCccc--------------------ccCCCCc---------------------HHH
Q psy138          232 ----------------------AGANVEA--------------------HDKDGLT---------------------ALH  248 (321)
Q Consensus       232 ----------------------~~~~~~~--------------------~~~~g~t---------------------~l~  248 (321)
                                            +|+|+..                    .+..|.+                     .||
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                  7888755                    4555644                     566


Q ss_pred             HHHHcC---CHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCccCCCCCcccee
Q psy138          249 CAASRG---HRECLETLITLCGADVDVIDTNGCSALFYAVTLGH----ADATTLLLQYGA--TPNRQDRKGRTYEYQ  316 (321)
Q Consensus       249 ~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~ga--~~~~~~~~g~t~l~~  316 (321)
                      .-..++   +.+++++|++ +|+++|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|+||||+
T Consensus       349 ~Y~~~~~~v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhH
Confidence            666655   6999999999 79999985 799999999988875    899999999998  699999999999984

>KOG4412|consensus

Probab=100.00  E-value=1.7e-41  Score=236.96  Aligned_cols=206  Identities=31%  Similarity=0.453  Sum_probs=171.2

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCcccccc-CCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhc
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAA-DEDGYTPLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVC  142 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~  142 (321)
                      +.++.+.++......-++-+++..+...+.+ |.+|+||||+||..|+.+++.+|++. +..++.+|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4677888888887888888888777334444 44899999999999999999999954 777888888899999999988


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC
Q psy138          143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS  222 (321)
Q Consensus       143 ~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  222 (321)
                      |+.++++.|+.+                                            .|+++|..+..|.|+||+|+..|+
T Consensus        83 g~~evVk~Ll~r--------------------------------------------~~advna~tn~G~T~LHyAagK~r  118 (226)
T KOG4412|consen   83 GNDEVVKELLNR--------------------------------------------SGADVNATTNGGQTCLHYAAGKGR  118 (226)
T ss_pred             CcHHHHHHHhcC--------------------------------------------CCCCcceecCCCcceehhhhcCCh
Confidence            888888777764                                            144566677778888888888899


Q ss_pred             HHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          223 SDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       223 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      .+++++|+++|+.++.+|..|.||||.|+.-|.++++++|+. .|+.+|.+|+.|+||||.|...++.++..+|+++||+
T Consensus       119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD  197 (226)
T ss_pred             hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh-cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccc
Confidence            999999999999898899999999999999999999999998 5899999999999999999888888888899999999


Q ss_pred             CCccCCCCCcccee
Q psy138          303 PNRQDRKGRTYEYQ  316 (321)
Q Consensus       303 ~~~~~~~g~t~l~~  316 (321)
                      .+.+|++| ||+-.
T Consensus       198 ~~~edke~-t~~~~  210 (226)
T KOG4412|consen  198 TDREDKEG-TALRI  210 (226)
T ss_pred             eeeccccC-chHHH
Confidence            99999988 87643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-40  Score=285.22  Aligned_cols=267  Identities=20%  Similarity=0.214  Sum_probs=222.2

Q ss_pred             HHHHHHcCCHHHHHHHHHc---CCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC
Q psy138           35 LMYAAQQGKDAEVKAILAS---RPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN  111 (321)
Q Consensus        35 L~~A~~~g~~~~~~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~  111 (321)
                      |..+...++.+.+...++.   .+...+..+..+.||||.|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~   82 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPN   82 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCcc
Confidence            4556666776445555543   2222344556789999999999999999999999987 68889999999999999999


Q ss_pred             HHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHH
Q psy138          112 VPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA  191 (321)
Q Consensus       112 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  191 (321)
                      .++++.|++.+.....  ..+.+|++.|+..++.+++++|+..+.+.....     .+......       ........+
T Consensus        83 ~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~  148 (477)
T PHA02878         83 KLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI-----DLVYIDKK-------SKDDIIEAE  148 (477)
T ss_pred             HhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC-----cHHHHhhc-------cchhhHHHH
Confidence            9999999998765544  567899999999999999999998754422110     01111100       000122346


Q ss_pred             HHHHHHHcCCCCcccCCC-CCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCc
Q psy138          192 VLKVLLHHNVDVNVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV  270 (321)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  270 (321)
                      ++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++ .|+++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~i  227 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGAST  227 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCC
Confidence            999999999999999988 9999999999999999999999999999999999999999999999999999999 79999


Q ss_pred             ccCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCccceee
Q psy138          271 DVIDTNGCSALFYAVTL-GHADATTLLLQYGATPNRQDR-KGRTYEYQW  317 (321)
Q Consensus       271 ~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~ga~~~~~~~-~g~t~l~~~  317 (321)
                      +.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||++
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            99999999999999976 789999999999999999986 899999985

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=280.08  Aligned_cols=305  Identities=15%  Similarity=0.155  Sum_probs=224.7

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcC--CHHHHHHHHHcCC-CcccccccCCccHHHHHHH--cC
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQG--KDAEVKAILASRP-NAVRERDRTRKTVLHYCAE--NT   76 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g--~~~~~~~ll~~~~-~~~~~~~~~g~t~L~~A~~--~~   76 (321)
                      .|++++|++.+.-.-...         ..|.||||+|+..+  +.++++.|++.+. ..++..+.-+.+||+.++.  .+
T Consensus        57 ~eivklLLs~GAdin~kD---------~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~  127 (672)
T PHA02730         57 IKIVRLLLSRGVERLCRN---------NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNI  127 (672)
T ss_pred             HHHHHHHHhCCCCCcccC---------CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCC
Confidence            478889998876654332         14889999998876  6889999998864 3355667677777777777  77


Q ss_pred             cHHHHHHHHHhCCccccccC-----CCCCcHHHHHHHhCCHHHHHHHHHcCCCCc-------cCCCCCCcH-HHHHH---
Q psy138           77 ILSCAETILEVAPDLIEAAD-----EDGYTPLHLAAIAGNVPLIHTLLAHRANVN-------SQDNEGHSV-VHWAT---  140 (321)
Q Consensus        77 ~~~~v~~Ll~~~~~~~~~~~-----~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~-------~~~~~~~t~-l~~a~---  140 (321)
                      +.+++++|+..+...++...     ..|.+|+++|...++.++|++|+++|++++       ..+....+| |++++   
T Consensus       128 ~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~  207 (672)
T PHA02730        128 DLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSH  207 (672)
T ss_pred             cHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhh
Confidence            77888888863322222221     256777777777777788888777777774       123333333 33222   


Q ss_pred             ---hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhh------------c-----------------------------
Q psy138          141 ---VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM------------C-----------------------------  176 (321)
Q Consensus       141 ---~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~------------~-----------------------------  176 (321)
                         ..++.|++++|+++|++++.++..|.||||++...            .                             
T Consensus       208 ~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        208 RESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence               34567777777777777777777777777741111            0                             


Q ss_pred             ----cccc------------------------cccc-----------------------------ch-hhhHHHHHHHHH
Q psy138          177 ----GHAS------------------------EMGN-----------------------------DV-RVGLAVLKVLLH  198 (321)
Q Consensus       177 ----~~~~------------------------~~~~-----------------------------~~-~~~~~~~~~l~~  198 (321)
                          +...                        ..+.                             .. ....+++++|++
T Consensus       288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence                0000                        0000                             01 246789999999


Q ss_pred             cCCCCcccCCCCCchhHHHHhcCC----HHHHHHHHHcCC--CcccccCCCCcHHHH---HHHcC---------CHHHHH
Q psy138          199 HNVDVNVVDKDGRQPILWAASAGS----SDAILALVKAGA--NVEAHDKDGLTALHC---AASRG---------HRECLE  260 (321)
Q Consensus       199 ~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~--~~~~~~~~g~t~l~~---a~~~~---------~~~~~~  260 (321)
                      +|++++.. ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||.   |...+         ..++++
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            99999985 789999999998875    899999999997  688899999999984   33332         235799


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCccceee
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR-KGRTYEYQW  317 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~-~g~t~l~~~  317 (321)
                      +|++ +|++++.+|..|.||||+|+..++.+++++|+++||+++.+|. .|.||+|+.
T Consensus       447 ~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        447 ILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             HHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence            9999 7999999999999999999999999999999999999999997 699999975

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=281.58  Aligned_cols=259  Identities=18%  Similarity=0.261  Sum_probs=224.4

Q ss_pred             HHHHHHHHHcCCCcccccccCCccHHHHHHH--cCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh-----CCHHHHH
Q psy138           44 DAEVKAILASRPNAVRERDRTRKTVLHYCAE--NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA-----GNVPLIH  116 (321)
Q Consensus        44 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~-----~~~~~v~  116 (321)
                      .+.|+.|++.+..  +.. ..+.|+++.+..  .++.+++++|+++|++ ++..+..|.||||.|+..     +..++++
T Consensus        18 ~~~v~~ll~~~~~--~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         18 LSTVKLLIKSCNP--NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             HHHHHHHHhcCCh--hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            5789999976432  222 356677775554  4589999999999998 688899999999999864     6789999


Q ss_pred             HHHHcCCCCccCCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHH
Q psy138          117 TLLAHRANVNSQDNEGHSVVHWATVCG---EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVL  193 (321)
Q Consensus       117 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~---~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (321)
                      +|+++|++++..+..|.||||+|+..+   +.+++++|+++|++++..+..|.||+|.++....         ....+++
T Consensus        94 ~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~---------~~~~~vv  164 (489)
T PHA02798         94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH---------HIDIEII  164 (489)
T ss_pred             HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC---------cchHHHH
Confidence            999999999999999999999999875   7899999999999999999999999999987422         1247999


Q ss_pred             HHHHHcCCCCcccC-CCCCchhHHHHhc----CCHHHHHHHHHcCCCcccccCCCCcHHH-------HHHHcCCHHHHHH
Q psy138          194 KVLLHHNVDVNVVD-KDGRQPILWAASA----GSSDAILALVKAGANVEAHDKDGLTALH-------CAASRGHRECLET  261 (321)
Q Consensus       194 ~~l~~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~g~t~l~-------~a~~~~~~~~~~~  261 (321)
                      ++|+++|++++..+ ..+.||+|.++..    ++.+++++|+++|++++..+..|.++++       .+...+..+++++
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            99999999999875 5789999998764    4899999999999999999988888876       2345567888888


Q ss_pred             HHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       262 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      |+.  ++|+|.+|..|.||||+|+..++.+++++|+++|||++.+|..|+||||++
T Consensus       245 l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        245 IFS--YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA  298 (489)
T ss_pred             HHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHH
Confidence            776  699999999999999999999999999999999999999999999999974

>KOG4177|consensus

Probab=100.00  E-value=7.2e-39  Score=286.16  Aligned_cols=285  Identities=29%  Similarity=0.367  Sum_probs=148.2

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      +.|++|.|...|..++++.+++.+.. ++..+..|.||+|.|+..++.++..++.+.++. .......+.||+|.|+..|
T Consensus       308 ~kt~l~~a~~~g~~~i~~~~l~~~~~-~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~-~~~a~~k~~~pl~la~~~g  385 (1143)
T KOG4177|consen  308 DQTPLHIASRLGHEEIVHLLLQAGAT-PNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQ-RRQAEEKGFTPLHLAVKSG  385 (1143)
T ss_pred             ccChhhhhcccchHHHHHHHhhccCC-ccccCcCCcccccHhhhhhhHHHHHHhhccccc-cCcccccCCcchhhhcccC
Confidence            44555555555554444444444433 344444445555555555544444444444433 2333444445555555555


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccc---------
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASE---------  181 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------  181 (321)
                      ..++++.++..|.+++.....|.||+|.+...++.++++.+++.|++++..+..|.||+|+++..+.....         
T Consensus       386 ~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~  465 (1143)
T KOG4177|consen  386 RVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGA  465 (1143)
T ss_pred             chhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCC
Confidence            55555555555544444444444555555555554444444444444444444444444444443211000         


Q ss_pred             -------------cccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHH
Q psy138          182 -------------MGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH  248 (321)
Q Consensus       182 -------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  248 (321)
                                   .-.......+++..+++.++..+.....+.+++|.+...+.....+.++++|++++.++..|+||||
T Consensus       466 ~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh  545 (1143)
T KOG4177|consen  466 DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLH  545 (1143)
T ss_pred             CcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHH
Confidence                         0000012223333333333333333333333333333333444444444455556666666777777


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       249 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      .|+.+|++.++++|++ +|+|++.+++.|+||||.|+..|+.+++.+|+++||++|..|.+|.|||+++.
T Consensus       546 ~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  546 VAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             HHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHH
Confidence            7777777777777777 57777777777777777777777777777777777777777777777777643

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-37  Score=260.73  Aligned_cols=286  Identities=14%  Similarity=0.155  Sum_probs=225.1

Q ss_pred             cccChhHHHHH-HHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHH-cCcHHHHHHHHHhCCcc--------------
Q psy138           28 TMEGATSLMYA-AQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAE-NTILSCAETILEVAPDL--------------   91 (321)
Q Consensus        28 ~~~g~~~L~~A-~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~~~~~--------------   91 (321)
                      ..+|.+++|+- +..|+.|+++.|+++|.+ ++.++..+.+|+|+|+. .++.|++++|+++|++.              
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            35688888764 557889999999998765 88888889999999965 69999999999998651              


Q ss_pred             ---------------------ccccCCCCCcHHHHHHHhC-------CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC
Q psy138           92 ---------------------IEAADEDGYTPLHLAAIAG-------NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG  143 (321)
Q Consensus        92 ---------------------~~~~~~~~~t~l~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  143 (321)
                                           ++..+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                                 1233456999999999999       899999999999999999999999999999999


Q ss_pred             --CHHHHHHHHHcCCCCCC-------------------CC-------CCCCchhhhH----------------hhhcccc
Q psy138          144 --EVEALETVLSAGAEPST-------------------PD-------IHGGYPIHYA----------------SQMCGHA  179 (321)
Q Consensus       144 --~~~i~~~L~~~~~~~~~-------------------~~-------~~~~~~l~~~----------------~~~~~~~  179 (321)
                        +.|+++.|++..-+...                   .|       ..|.+|-...                .+++..-
T Consensus       227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence              88999999875221100                   00       0111111000                0000000


Q ss_pred             cc----cccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCC--CcHHHHHHHc
Q psy138          180 SE----MGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDG--LTALHCAASR  253 (321)
Q Consensus       180 ~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g--~t~l~~a~~~  253 (321)
                      +-    --.......+++++|++.|++...  .....+++.|+..|+.+++++|+++|++++.+|.+|  .||||.|+..
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n  384 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSI  384 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHh
Confidence            00    000113467899999999998752  235567899999999999999999999999988775  6999998776


Q ss_pred             CCHH---HHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          254 GHRE---CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       254 ~~~~---~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ...+   ++++|++ +|+++|.+|..|.||||+|+..++.+++++|+++||+++.+|..|+||++++
T Consensus       385 ~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        385 HESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             ccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            6654   5788898 7999999999999999999999999999999999999999999999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-36  Score=266.71  Aligned_cols=269  Identities=16%  Similarity=0.181  Sum_probs=199.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHH--HcCcHHHHHHHHHhCCccccccC---CCC--------
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA--ENTILSCAETILEVAPDLIEAAD---EDG--------   99 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~---~~~--------   99 (321)
                      ++++.|+..|+.++++.|++.|.+ ++.+|..|.||||.|+  ..|+.+++++|+++|+++ +..+   ..|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccc
Confidence            667788888888888888877655 7888888888888543  467888888888888774 3222   223        


Q ss_pred             ---CcHHHHHHH-----------hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCH--HHHHHHHHcCCCCC----
Q psy138          100 ---YTPLHLAAI-----------AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV--EALETVLSAGAEPS----  159 (321)
Q Consensus       100 ---~t~l~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~i~~~L~~~~~~~~----  159 (321)
                         .||||+|+.           .++.+++++|+++|++++..+..|.||||+|+..|+.  +++++|++ |++..    
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence               488888875           3578888888888888888888888888888888874  68888875 66543    


Q ss_pred             CCCCCCCchhhhHhh------h--------------ccc-------------c---------cc----------c--ccc
Q psy138          160 TPDIHGGYPIHYASQ------M--------------CGH-------------A---------SE----------M--GND  185 (321)
Q Consensus       160 ~~~~~~~~~l~~~~~------~--------------~~~-------------~---------~~----------~--~~~  185 (321)
                      ..+..+.++++.++.      .              .+.             .         ..          .  ...
T Consensus       262 ~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  341 (661)
T PHA02917        262 IDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTF  341 (661)
T ss_pred             ccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHc
Confidence            233334443333330      0              000             0         00          0  001


Q ss_pred             hhhhHHHHHHHHHcCCC------------------------------CcccCCCCCchhHHHHhcC--------------
Q psy138          186 VRVGLAVLKVLLHHNVD------------------------------VNVVDKDGRQPILWAASAG--------------  221 (321)
Q Consensus       186 ~~~~~~~~~~l~~~~~~------------------------------~~~~~~~~~t~l~~a~~~~--------------  221 (321)
                      ....++++++|++.|++                              ++..+..|.||||.|++.+              
T Consensus       342 g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~  421 (661)
T PHA02917        342 GDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKG  421 (661)
T ss_pred             CCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhc
Confidence            11124455555555544                              3444456899999987533              


Q ss_pred             ---------CHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH-cCCHH
Q psy138          222 ---------SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT-LGHAD  291 (321)
Q Consensus       222 ---------~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~-~~~~~  291 (321)
                               ..+++++|+++|++++.+|..|.||||+|+..++.+++++|++ .|++++.++..|.|||++|+. .++.+
T Consensus       422 ~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~-~GAdin~~d~~G~T~L~~A~~~~~~~~  500 (661)
T PHA02917        422 LCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLE-SGSDVNIRSNNGYTCIAIAINESRNIE  500 (661)
T ss_pred             cchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCCHH
Confidence                     3567899999999999999999999999999999999999999 799999999999999999996 78999


Q ss_pred             HHHHHHHcCCCCCc
Q psy138          292 ATTLLLQYGATPNR  305 (321)
Q Consensus       292 ~~~~Ll~~ga~~~~  305 (321)
                      ++++|+++|++++.
T Consensus       501 iv~~LL~~ga~i~~  514 (661)
T PHA02917        501 LLKMLLCHKPTLDC  514 (661)
T ss_pred             HHHHHHHcCCChhH
Confidence            99999999999864

>KOG4177|consensus

Probab=100.00  E-value=2.3e-38  Score=282.96  Aligned_cols=274  Identities=31%  Similarity=0.430  Sum_probs=219.7

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.+|+|.|++.|..+.++.++..+.. ++.+...|.||||.|+.+++..+++.++++++. .+..+..|+||+|+|+
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhhcCCChhhhhh
Confidence            34466666666666666666666666655 566666666666666666666666666666666 4566666677777777


Q ss_pred             HhC-CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccch
Q psy138          108 IAG-NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV  186 (321)
Q Consensus       108 ~~~-~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (321)
                      ..| ..++...+++.|.+++.....|.||||.|...|+.++++.+++.++..+.....+.+++|.+..            
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~------------  516 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAAD------------  516 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhh------------
Confidence            666 5666666666666666666667777777777777777777776666666666666666666655            


Q ss_pred             hhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhc
Q psy138          187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC  266 (321)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  266 (321)
                      .......+.++++|++++.++..++||||.|+..|+.++|++|+++|++++.+++.|+||||.|+..|+.+++.+|++ +
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~  595 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-H  595 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHH-c
Confidence            455788999999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCcccee
Q psy138          267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT-----PNRQDRKGRTYEYQ  316 (321)
Q Consensus       267 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~-----~~~~~~~g~t~l~~  316 (321)
                      |+++|..|.+|.|||+.|+..|..+++++|+..|++     +...+..|.+|...
T Consensus       596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v  650 (1143)
T KOG4177|consen  596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDV  650 (1143)
T ss_pred             CCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhH
Confidence            999999999999999999999999999999999999     88889999999765

>KOG0508|consensus

Probab=100.00  E-value=1.6e-35  Score=236.49  Aligned_cols=215  Identities=27%  Similarity=0.358  Sum_probs=188.6

Q ss_pred             HHHHcCCHHHHHHHHHcCCC----cccccccCCccHHHHHHHcCcHHHHHHHHHhCCccc--------cccCCCCCcHHH
Q psy138           37 YAAQQGKDAEVKAILASRPN----AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI--------EAADEDGYTPLH  104 (321)
Q Consensus        37 ~A~~~g~~~~~~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------~~~~~~~~t~l~  104 (321)
                      .|++.|....++.|+.....    .+-....+|.|||-.|+++|+.+++++|+++....+        +-....|-+||-
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            68888888887777765431    122335678899999999999999999999643322        122346778999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccccccc
Q psy138          105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGN  184 (321)
Q Consensus       105 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  184 (321)
                      .|+..|++++|+.|+++|+++|..+....|||-.||..|+++++++|+++|+++...+..|.|.|++++.          
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y----------  159 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY----------  159 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec----------
Confidence            9999999999999999999999988888899999999999999999999999999999999999999986          


Q ss_pred             chhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          185 DVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                        +++.+++++|++.|+|+|.++..|+|+||.++..|+.+++++|+.+|+.+. .|..|.|||..|+..|+.+++.+|++
T Consensus       160 --kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  160 --KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             --cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence              666899999999999999999999999999999999999999999999886 46669999999999999999999994

>KOG0509|consensus

Probab=100.00  E-value=4.2e-35  Score=243.01  Aligned_cols=210  Identities=28%  Similarity=0.441  Sum_probs=165.2

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC-CCCCcHHHHHHHh
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLAAIA  109 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~A~~~  109 (321)
                      ...-+..|++.|+++.++.+++.....++..|.+|.|+||+|+.+++++++++|++++++ ++... .-+.||||+|+++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHc
Confidence            466788999999999999999885666888888999999999999999999999999988 45554 6678999999999


Q ss_pred             CCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhh
Q psy138          110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG  189 (321)
Q Consensus       110 ~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  189 (321)
                      |+..+|++|+++|++++.+|..|.+|+|.|+..++.-++-+++.++++++.+|.+|+||+++|+-..            .
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg------------~  190 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKG------------F  190 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhc------------c
Confidence            9999999999999999999999999999999999998888888888877777777777777766531            1


Q ss_pred             HHHHHHHHHcCCCCcccC-CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHc
Q psy138          190 LAVLKVLLHHNVDVNVVD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR  253 (321)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  253 (321)
                      ...+..|++.+..+...| ..|.||||+|+..|+..++..+++-|++.+..|.+|.||+.+|...
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            223666666666666665 6677777777777777777755555566666666677777766554

>KOG0509|consensus

Probab=100.00  E-value=1.7e-35  Score=245.42  Aligned_cols=209  Identities=30%  Similarity=0.470  Sum_probs=191.1

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHh-CCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHHHHHHhc
Q psy138           65 RKTVLHYCAENTILSCAETILEV-APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATVC  142 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~~~  142 (321)
                      ....+..|++.|.++-++.+++. +.. ++..|.+|.|+||+|+.+++.+++++|+++|+++|... .-+.||||+|+++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~-v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGES-VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcC-CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            35678999999999999999999 555 77888899999999999999999999999999999887 6778999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC
Q psy138          143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS  222 (321)
Q Consensus       143 ~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  222 (321)
                      |+..+++.|+++|+++...|.+|.+|+|.|+..            .+..++-+++.++++++.+|.+|+||||+|+.+|+
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~------------~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF------------GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh------------CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc
Confidence            999999999999999999999999999999984            33678899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHc
Q psy138          223 SDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL  287 (321)
Q Consensus       223 ~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  287 (321)
                      ...++.|+..|+.+...| ..|.||||+|+..|+..+++.+++ .|++.+.+|.+|.||+.+|.+.
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhh-cCCcccccccCCCCHHHHHHHh
Confidence            988999999999999887 899999999999999999995555 7899999999999999999776

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.9e-33  Score=235.79  Aligned_cols=278  Identities=16%  Similarity=0.118  Sum_probs=216.8

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHH-cCCHHHHHHHHHcCCC------------------------
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQ-QGKDAEVKAILASRPN------------------------   56 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~-~g~~~~~~~ll~~~~~------------------------   56 (321)
                      +|++++|++++.        +.+.. +..|.+|+|+|+. .|+.|++++||+.|.+                        
T Consensus        85 lElvk~LI~~GA--------dvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792         85 IELLKLLISKGL--------EINSI-KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             HHHHHHHHHcCC--------Ccccc-cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch
Confidence            578888888855        33322 2247899999966 6999999999999854                        


Q ss_pred             -----------cccccccCCccHHHHHHHcC-------cHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC--CHHHHH
Q psy138           57 -----------AVRERDRTRKTVLHYCAENT-------ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG--NVPLIH  116 (321)
Q Consensus        57 -----------~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~  116 (321)
                                 .++.+|..|.||||+|+.++       +.|+++.|+++++. ++..+..|.||||+|+.+.  +.++++
T Consensus       156 ~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~~ei~~  234 (631)
T PHA02792        156 DDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIKREIFD  234 (631)
T ss_pred             hhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccchHHHHH
Confidence                       12245677999999999999       89999999999998 6778889999999999999  899999


Q ss_pred             HHHHcCCCCc-------------c------CC-------CCCCc------------------------------HHHHHH
Q psy138          117 TLLAHRANVN-------------S------QD-------NEGHS------------------------------VVHWAT  140 (321)
Q Consensus       117 ~Ll~~~~~~~-------------~------~~-------~~~~t------------------------------~l~~a~  140 (321)
                      +|++..-...             .      .|       -.|.+                              .|+.-.
T Consensus       235 ~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl  314 (631)
T PHA02792        235 ALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYV  314 (631)
T ss_pred             HHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            9987421100             0      00       01111                              223333


Q ss_pred             hcC--CHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCC--CchhHH
Q psy138          141 VCG--EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG--RQPILW  216 (321)
Q Consensus       141 ~~~--~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~t~l~~  216 (321)
                      ..+  +.+++++|+++|++...  ......++.|+.            ..+.+++++|+++|++++..+..|  .||||.
T Consensus       315 ~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~------------~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~  380 (631)
T PHA02792        315 SYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFD------------NRDPKVVEYILKNGNVVVEDDDNIINIMPLFP  380 (631)
T ss_pred             hcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHH------------cCCHHHHHHHHHcCCchhhhcCCCCChhHHHH
Confidence            333  67889999999998752  123444555544            445899999999999999988764  699998


Q ss_pred             HHhcCCHH---HHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH--cC---
Q psy138          217 AASAGSSD---AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT--LG---  288 (321)
Q Consensus       217 a~~~~~~~---~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~--~~---  288 (321)
                      |+.....+   ++++|+++|++++.+|..|.||||+|+..++.+++++|++ +|++++.+|..|.||+++|+.  .+   
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~  459 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIP  459 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccH
Confidence            87766543   5788999999999999999999999999999999999999 799999999999999999976  22   


Q ss_pred             -----CHHHHHHHHHcCCCCC
Q psy138          289 -----HADATTLLLQYGATPN  304 (321)
Q Consensus       289 -----~~~~~~~Ll~~ga~~~  304 (321)
                           ..++++.|+++|++++
T Consensus       460 ~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        460 EIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHHHHHHhcCCChh
Confidence                 3567999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=224.94  Aligned_cols=238  Identities=19%  Similarity=0.150  Sum_probs=166.3

Q ss_pred             CCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcccc------ccCCCCCcHHHHHHH--hCCHH
Q psy138           42 GKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE------AADEDGYTPLHLAAI--AGNVP  113 (321)
Q Consensus        42 g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~t~l~~A~~--~~~~~  113 (321)
                      +-.+++-.++-..+..++.+..++     +|+..+..|++++|+.++... +      ..+..++|+||+++.  .|+.+
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~e  132 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEID  132 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHH
Confidence            344554433334444477766666     889999999999999998873 3      456678999999999  88999


Q ss_pred             HHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC------CCCCchhhhHhhhcccccccccchh
Q psy138          114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD------IHGGYPIHYASQMCGHASEMGNDVR  187 (321)
Q Consensus       114 ~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~  187 (321)
                      ++++|+++|++++..  ++.||+|.|+..++.+++++|+++|++.....      ..+.++++.+..            .
T Consensus       133 iV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~------------~  198 (437)
T PHA02795        133 IVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDE------------P  198 (437)
T ss_pred             HHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHh------------c
Confidence            999999999999874  45899999999999999999999997432211      224455555543            3


Q ss_pred             hhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCC--------HHHH
Q psy138          188 VGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH--------RECL  259 (321)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~--------~~~~  259 (321)
                      ...+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+        .+++
T Consensus       199 ~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv  278 (437)
T PHA02795        199 TVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL  278 (437)
T ss_pred             CHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence            34677777777777777777777777777777777777777777777777777777777777777663        4677


Q ss_pred             HHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q psy138          260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR  305 (321)
Q Consensus       260 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~  305 (321)
                      ++|++ .|++++..+   .+++..  ...+.++++.+++++..++.
T Consensus       279 elLL~-~gadI~~~~---~~~~~~--~~~n~~~ik~lI~y~~~ldy  318 (437)
T PHA02795        279 EILLR-EPLSIDCIK---LAILNN--TIENHDVIKLCIKYFMMVDY  318 (437)
T ss_pred             HHHHh-CCCCCCchh---HHhhhc--ccchHHHHHHHHHHHHhccc
Confidence            77776 576666432   122221  11256677777776654443

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-31  Score=206.57  Aligned_cols=96  Identities=17%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCCcccCCCCCchhHHHHh--cCCHHHHHHHHHcCCCcccccCCCCcHHHH-HHHcCCHHHHHHHHhhcC
Q psy138          191 AVLKVLLHHNVDVNVVDKDGRQPILWAAS--AGSSDAILALVKAGANVEAHDKDGLTALHC-AASRGHRECLETLITLCG  267 (321)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~Ll~~~~  267 (321)
                      +++++|+++|++++..+..|.||||.|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|++ .|
T Consensus       104 eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~-~G  182 (209)
T PHA02859        104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS-LG  182 (209)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH-cC
Confidence            44445555555555555555555555544  245666666666666666666666666663 344556666666666 46


Q ss_pred             CCcccCCCCCCcHHHHHHHc
Q psy138          268 ADVDVIDTNGCSALFYAVTL  287 (321)
Q Consensus       268 ~~~~~~~~~g~t~l~~A~~~  287 (321)
                      ++++.+|..|.||+++|...
T Consensus       183 adi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        183 IDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCCCCCCCCCCCHHHHHhhh
Confidence            66666666666666666544

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-31  Score=203.07  Aligned_cols=177  Identities=18%  Similarity=0.218  Sum_probs=134.3

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC--CHHHHHHHHHcCCCCccCC-CCCCcHHHHHH
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG--NVPLIHTLLAHRANVNSQD-NEGHSVVHWAT  140 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~  140 (321)
                      .++||||.|+..|+.++++.|++.    .+..+..|.||||+|+..+  +.+++++|+++|++++..+ ..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            456777777777777777777764    2345667777777777643  6777777777777777775 36777777766


Q ss_pred             hc---CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH-
Q psy138          141 VC---GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW-  216 (321)
Q Consensus       141 ~~---~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~-  216 (321)
                      ..   ++.+++++|+++|++++..+..|.||+|.++...          ....+++++|++.|++++.++..|.||||. 
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~----------~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNF----------NVRINVIKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhc----------cCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence            43   3677777777777777777777778877765421          123678888888888888888889999985 


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcC
Q psy138          217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRG  254 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~  254 (321)
                      ++..++.+++++|+++|++++.+|..|.|||++|+..+
T Consensus       166 a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        166 ILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            55678899999999999999999999999999987654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.3e-29  Score=205.92  Aligned_cols=213  Identities=11%  Similarity=0.043  Sum_probs=181.1

Q ss_pred             HHHHcCCHHHHHHHHHcCCCccc------ccccCCccHHHHHHH--cCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           37 YAAQQGKDAEVKAILASRPNAVR------ERDRTRKTVLHYCAE--NTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        37 ~A~~~g~~~~~~~ll~~~~~~~~------~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      +|+..+..|+++.|+..+.. ++      .++..++|+||.|+.  .|+.+++++|+++|+++ +.  .++.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHH
Confidence            99999999999999998876 33      577889999999999  99999999999999994 44  355899999999


Q ss_pred             hCCHHHHHHHHHcCCCCc-cC-----CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccccc
Q psy138          109 AGNVPLIHTLLAHRANVN-SQ-----DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM  182 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~-~~-----~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  182 (321)
                      .++.+++++|+++|++.. ..     +..+.++++.|...+..+++++|+++|++++..+..|.||||+|+.        
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~--------  230 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIY--------  230 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHH--------
Confidence            999999999999997432 22     1347789999999999999999999999999999999999999987        


Q ss_pred             ccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC--------HHHHHHHHHcCCCcccccCCCCcHHHHHHHcC
Q psy138          183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS--------SDAILALVKAGANVEAHDKDGLTALHCAASRG  254 (321)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~--------~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~  254 (321)
                          ..+.+++++|+++|++++..+..|.||||.|+..|+        .+++++|+++|++++....   +++..  ...
T Consensus       231 ----~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~---~~~~~--~~~  301 (437)
T PHA02795        231 ----AGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL---AILNN--TIE  301 (437)
T ss_pred             ----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH---Hhhhc--ccc
Confidence                445799999999999999999999999999999984        6999999999999876432   22221  123


Q ss_pred             CHHHHHHHHhhcCCCcc
Q psy138          255 HRECLETLITLCGADVD  271 (321)
Q Consensus       255 ~~~~~~~Ll~~~~~~~~  271 (321)
                      +.++++.+++ +.+.++
T Consensus       302 n~~~ik~lI~-y~~~ld  317 (437)
T PHA02795        302 NHDVIKLCIK-YFMMVD  317 (437)
T ss_pred             hHHHHHHHHH-HHHhcc
Confidence            7889999998 455544

>KOG0502|consensus

Probab=99.97  E-value=2e-30  Score=187.38  Aligned_cols=264  Identities=23%  Similarity=0.275  Sum_probs=222.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCH
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV  112 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  112 (321)
                      ..+..++..|-.+.-..+......   .++..|..-+-.|...++.++......-.++-+...+..|+++++.|.-+++.
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~---~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~  109 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISA---LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV  109 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHH---HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence            445666666665554444433221   23456677777888888888888888777766666777789999999999988


Q ss_pred             HHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHH
Q psy138          113 PLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV  192 (321)
Q Consensus       113 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  192 (321)
                      ..+..++.+|+..|..+.-+.+|+.+++...+.+.+..+.++  .++..|..|.|||.+|+.            ...+++
T Consensus       110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa------------~G~i~v  175 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAA------------KGHIPV  175 (296)
T ss_pred             ceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHh------------cCchHH
Confidence            888999988888888888888999999888887777666653  567788899999998887            445889


Q ss_pred             HHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy138          193 LKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV  272 (321)
Q Consensus       193 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  272 (321)
                      +++|++.|++++.......++|..|++.|..++|++|++++.|+|..|.+|-|||-+|++.++.++++.|++ .|+++++
T Consensus       176 V~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~  254 (296)
T KOG0502|consen  176 VQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQ  254 (296)
T ss_pred             HHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHh-cCCCccc
Confidence            999999999999888889999999999999999999999999999999999999999999999999999999 7999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccce
Q psy138          273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEY  315 (321)
Q Consensus       273 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~  315 (321)
                      .+..|++++..|+..|+. +++..++.-+.....|+.-+||+|
T Consensus       255 e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  255 EDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             ccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999998 888889988888888988888876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.96  E-value=1.5e-28  Score=223.91  Aligned_cols=238  Identities=21%  Similarity=0.173  Sum_probs=185.0

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccHHH-HHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASR-PNAVRERDRTRKTVLH-YCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA  106 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A  106 (321)
                      ..+...++.|++.|+.+.++.+++.. +.+++..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            45789999999999999999999873 3447888899999999 8999999999999999876     467899999999


Q ss_pred             HHhC---CHHHHHHHHHcCCC------Cc----cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHh
Q psy138          107 AIAG---NVPLIHTLLAHRAN------VN----SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS  173 (321)
Q Consensus       107 ~~~~---~~~~v~~Ll~~~~~------~~----~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~  173 (321)
                      +..+   ...+++.+...+.+      .+    .....|.||||+|+..|+.++++.|+++|++++.......      +
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~------~  163 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF------F  163 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch------h
Confidence            8732   22334444443322      11    1234699999999999999999999999999874322110      0


Q ss_pred             hhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHc
Q psy138          174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR  253 (321)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  253 (321)
                                         .     .+ ........|.||||.|+..|+.+++++|+++|+|++..|..|+||||+|+..
T Consensus       164 -------------------~-----~~-~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       164 -------------------V-----KS-QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             -------------------h-----cC-CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence                               0     00 0001224688999999999999999999999999999999999999999998


Q ss_pred             C---------CHHHHHHHHhhcCCCc-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy138          254 G---------HRECLETLITLCGADV-------DVIDTNGCSALFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       254 ~---------~~~~~~~Ll~~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                      +         ...+.+++++ .++..       +..|..|.|||++|+..|+.+++++|++.+++.
T Consensus       219 ~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~  283 (743)
T TIGR00870       219 NEFKAEYEELSCQMYNFALS-LLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ  283 (743)
T ss_pred             hhhhHHHHHHHHHHHHHHHH-HHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhc
Confidence            7         2335566666 34443       667999999999999999999999999965443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.96  E-value=1.1e-29  Score=183.64  Aligned_cols=237  Identities=22%  Similarity=0.306  Sum_probs=214.7

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      ..|.+.+-.+.+.|+.+..+..+.-.++.+...+..|+++++.|+-.++...+...+.++.. .+..+-.+.+|+.+++.
T Consensus        60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r-gnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             hcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc-CCccccccCChhhHHHH
Confidence            44778888899999999999998888887888888999999999999999999999999877 57778889999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      +.+.+.+..+.++  .+|..|+.|.|||.+|+..|+++++++|++.|+++...-+...+.|..|++            .+
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~------------gg  204 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATR------------GG  204 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhc------------CC
Confidence            9988888777665  567889999999999999999999999999999999998899999999987            45


Q ss_pred             hHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCC
Q psy138          189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA  268 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  268 (321)
                      ..+++++|+.++.++|..|.+|.|||.+|++-++.++++.|+..|++++..+..|++++..|+..|+- +++..++ .-+
T Consensus       205 ytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~  282 (296)
T KOG0502|consen  205 YTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHA  282 (296)
T ss_pred             hHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHH-HHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999998 8888888 477


Q ss_pred             CcccCCCCCCcHHH
Q psy138          269 DVDVIDTNGCSALF  282 (321)
Q Consensus       269 ~~~~~~~~g~t~l~  282 (321)
                      +.+.+|..-.+|+|
T Consensus       283 lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  283 LKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhhcccCCCCCC
Confidence            77788877777764

>KOG0507|consensus

Probab=99.96  E-value=2.2e-28  Score=206.27  Aligned_cols=242  Identities=26%  Similarity=0.351  Sum_probs=212.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcC------------CCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCC
Q psy138           32 ATSLMYAAQQGKDAEVKAILASR------------PNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDG   99 (321)
Q Consensus        32 ~~~L~~A~~~g~~~~~~~ll~~~------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   99 (321)
                      .+-+..|++.|+++.+..+|+..            ++..+..|.+|.|+||.|+.+|+.+++++|++..+- ....+..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhccC
Confidence            35577899999999999999753            234677889999999999999999999999998776 56677899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccc
Q psy138          100 YTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA  179 (321)
Q Consensus       100 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (321)
                      .+|||+|++.|+.++++.++.++..+|..+..|.||||.|+..|+.+++.+|+.+|+++-..+..+.|++..|++...  
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr--  160 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR--  160 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998533  


Q ss_pred             cccccchhhhHHHHHHHHHcCCCC--------cccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy138          180 SEMGNDVRVGLAVLKVLLHHNVDV--------NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA  251 (321)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~  251 (321)
                                .+++..|++...+.        ..++..+.+|+|.|+++|+.++++.|++.|.++|.....| |+||-|+
T Consensus       161 ----------~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaa  229 (854)
T KOG0507|consen  161 ----------AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAA  229 (854)
T ss_pred             ----------hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHh
Confidence                      57777777763322        1234456789999999999999999999999999887776 7999999


Q ss_pred             HcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC
Q psy138          252 SRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG  288 (321)
Q Consensus       252 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  288 (321)
                      ..|..+++++|++ .|++...++.+|.|+|.+-....
T Consensus       230 lcgk~evvr~ll~-~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  230 LCGKAEVVRFLLE-IGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hcCcchhhhHHHh-hccccccccccchHHHHHHHhcc
Confidence            9999999999999 79999999999999998876554

>KOG4369|consensus

Probab=99.95  E-value=1.2e-28  Score=215.14  Aligned_cols=275  Identities=25%  Similarity=0.285  Sum_probs=242.3

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      ..+-.|+|..||+.|+.|.++.|+.+|.. +..+|..|.+||.+|+-.||..+|+.|+.+..++....|..+.|+|.+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            34567999999999999999999988877 88999999999999999999999999999999977788999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC--CCCCCchhhhHhhhcccccccccc
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP--DIHGGYPIHYASQMCGHASEMGND  185 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~  185 (321)
                      ..|+.++|++|+..|++-..++....|||..|...|..++++.|+..|.+++.+  ...|-.||+.+... +        
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn-g--------  903 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN-G--------  903 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc-c--------
Confidence            999999999999999998888889999999999999999999999999888755  56788999988763 3        


Q ss_pred             hhhhHHHHHHHHHcCCCCcccC-CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          186 VRVGLAVLKVLLHHNVDVNVVD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                         .-+..+.|++.|.++|..- .+.+|+|-.|+..|+.+++.+||.+.+++..+.+.|.|||+-++..|.+++-++|+.
T Consensus       904 ---h~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  904 ---HQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             ---ccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence               3578889999999998764 577899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          265 LCGADVDVID--TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       265 ~~~~~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                       .|+|.|..-  ...-|+|.+++..|+.+.+..|+...|.++++|++|.|+|+.
T Consensus       981 -~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwl 1033 (2131)
T KOG4369|consen  981 -AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWL 1033 (2131)
T ss_pred             -cccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccch
Confidence             699988642  244577788888888888888888888888888888888765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=1.3e-26  Score=212.33  Aligned_cols=177  Identities=24%  Similarity=0.303  Sum_probs=135.1

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhc
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC  176 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~  176 (321)
                      ..+.++|+.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||+|.|+.. 
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-  601 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-  601 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-
Confidence            3455667777777777777777777777777777777777777777777777777777777776666777777766652 


Q ss_pred             ccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCH
Q psy138          177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR  256 (321)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  256 (321)
                                 .+.+++++|++.+...+  ...+.++||.|+..|+.++++.|+++|++++.+|.+|.||||+|+..|+.
T Consensus       602 -----------g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~  668 (823)
T PLN03192        602 -----------KHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV  668 (823)
T ss_pred             -----------CCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence                       33566666666554433  23466899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcccCCCCC-CcHHHHHHHcC
Q psy138          257 ECLETLITLCGADVDVIDTNG-CSALFYAVTLG  288 (321)
Q Consensus       257 ~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~  288 (321)
                      +++++|++ +|++++..+..| .||.+++....
T Consensus       669 ~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        669 DMVRLLIM-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            99999998 799999999888 88988775543

>KOG0507|consensus

Probab=99.95  E-value=1.1e-27  Score=201.94  Aligned_cols=236  Identities=24%  Similarity=0.317  Sum_probs=212.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCC------------ccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCc
Q psy138           67 TVLHYCAENTILSCAETILEVAP------------DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS  134 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t  134 (321)
                      +-+..|++.|+++.+..|++...            +-.+..|.+|.|.||.|+..|+.++++.|+++.+-++..+..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            45778999999999999999632            225667889999999999999999999999999999989999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchh
Q psy138          135 VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI  214 (321)
Q Consensus       135 ~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  214 (321)
                      |||+|++.|+.++++.++..+..++..+..+.+|+|.++..            +..+++.+|+++++++-..+.++.|++
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh------------gh~dvv~~Ll~~~adp~i~nns~~t~l  152 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH------------GHLEVVFYLLKKNADPFIRNNSKETVL  152 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh------------cchHHHHHHHhcCCCccccCcccccHH
Confidence            99999999999999999999988899999999999999984            447999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCc--------ccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH
Q psy138          215 LWAASAGSSDAILALVKAGANV--------EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT  286 (321)
Q Consensus       215 ~~a~~~~~~~~~~~Ll~~~~~~--------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  286 (321)
                      ..|++.|..++++.|++.....        ..++..+.+|||.|+++|+.++++.|++ .|.++|....+| |+||-|+.
T Consensus       153 dlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaal  230 (854)
T KOG0507|consen  153 DLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAAL  230 (854)
T ss_pred             HHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhh
Confidence            9999999999999999763222        2234567789999999999999999999 799999887664 78999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          287 LGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       287 ~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      .|..+++++|++.|++..++|..|+|+|+.
T Consensus       231 cgk~evvr~ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  231 CGKAEVVRFLLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             cCcchhhhHHHhhccccccccccchHHHHH
Confidence            999999999999999999999999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=9e-27  Score=213.46  Aligned_cols=174  Identities=25%  Similarity=0.293  Sum_probs=161.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCC
Q psy138          129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK  208 (321)
Q Consensus       129 ~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (321)
                      +..+.++|+.|+..|+.++++.|++.|++++..|..|.||||.|+.            .+..+++++|+++|++++..+.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~------------~g~~~~v~~Ll~~gadin~~d~  589 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAAS------------KGYEDCVLVLLKHACNVHIRDA  589 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------cChHHHHHHHHhcCCCCCCcCC
Confidence            3456789999999999999999999999999999999999999997            4457999999999999999999


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC
Q psy138          209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG  288 (321)
Q Consensus       209 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  288 (321)
                      +|.||||.|+..|+.+++++|++.++..+.  ..+.++||.|+..|+.+++++|++ +|++++.+|..|.||||+|+..|
T Consensus       590 ~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        590 NGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999988776543  456789999999999999999999 79999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCCCC-Cccceee
Q psy138          289 HADATTLLLQYGATPNRQDRKG-RTYEYQW  317 (321)
Q Consensus       289 ~~~~~~~Ll~~ga~~~~~~~~g-~t~l~~~  317 (321)
                      +.+++++|+++||+++.+|..| .||++..
T Consensus       667 ~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        667 HVDMVRLLIMNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999 8887654

>KOG0505|consensus

Probab=99.95  E-value=1.3e-26  Score=188.72  Aligned_cols=230  Identities=26%  Similarity=0.362  Sum_probs=126.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCH
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV  112 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  112 (321)
                      -.+.-|+..|+.+-+..+|..+.. ++..+.+|.|+||.||.-.+.+||++|+++++. ++..|..++||||.|+.+|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhcccccH
Confidence            346667777777777777766644 466667777777777777777777777777766 566677777777777777777


Q ss_pred             HHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCchhhhHhhhcccccccccchhhhHH
Q psy138          113 PLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA-GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLA  191 (321)
Q Consensus       113 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  191 (321)
                      .++++|+++|+++...+.+|..|...+......+++..-+.. |.++.            +++...        ...-+.
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~ie------------a~R~~~--------e~~ml~  179 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIE------------AARKAE--------EQTMLD  179 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHH------------HHhhhh--------HHHHHH
Confidence            777777777777766666666666666555444444333321 11110            010000        000111


Q ss_pred             HHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy138          192 VLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD  271 (321)
Q Consensus       192 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  271 (321)
                      -+...+..|...+.....|.|.||.|+.+|..++.++|++.|.+++.+|.+|+||||.|+..|+.++.+.|++ +|++++
T Consensus       180 D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d  258 (527)
T KOG0505|consen  180 DARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMD  258 (527)
T ss_pred             HHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHH-hhcccc
Confidence            1222222444444444344555555555555555555555555555555555555555555555555554444 455555


Q ss_pred             cCCCCCCcHHHHHH
Q psy138          272 VIDTNGCSALFYAV  285 (321)
Q Consensus       272 ~~~~~g~t~l~~A~  285 (321)
                      .....|.||+.+|.
T Consensus       259 ~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  259 AKTKMGETPLDVAD  272 (527)
T ss_pred             hhhhcCCCCccchh
Confidence            55555555554443

>KOG0505|consensus

Probab=99.94  E-value=2.2e-26  Score=187.54  Aligned_cols=230  Identities=29%  Similarity=0.406  Sum_probs=192.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      -.+..|+..|..+-++.|+..+.. ++..+.+|.|+||-||...+.++|++|+++|++++..+..|+||+|.|+..|+..
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            356677889999999999999977 5888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHH-cCCCCcccCCCCCchhHHHHhcCCHHH
Q psy138          147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLH-HNVDVNVVDKDGRQPILWAASAGSSDA  225 (321)
Q Consensus       147 i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~  225 (321)
                      ++++|+.+|+++...+..|..|...+-.-            ...+++..-.. .|++++..-.        +-..-..+-
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~e------------a~~~~l~~~~~r~gi~iea~R~--------~~e~~ml~D  180 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDE------------ATLDVLETEMARQGIDIEAARK--------AEEQTMLDD  180 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCc------------chhHHHHHHHHHhcccHHHHhh--------hhHHHHHHH
Confidence            99999999999999999999998766531            12233332222 2333221100        001112333


Q ss_pred             HHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q psy138          226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR  305 (321)
Q Consensus       226 ~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~  305 (321)
                      ++..+..|...+..+..|-|.||.|+..|..++.++|++ +|.+++.+|.+|+||||.|+-.|..+++++|+++|++++.
T Consensus       181 ~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  181 ARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             HHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            455556898888888779999999999999999999999 7999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeec
Q psy138          306 QDRKGRTYEYQWR  318 (321)
Q Consensus       306 ~~~~g~t~l~~~~  318 (321)
                      ++..|.||++++.
T Consensus       260 ~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  260 KTKMGETPLDVAD  272 (527)
T ss_pred             hhhcCCCCccchh
Confidence            9999999998864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=2.7e-26  Score=209.32  Aligned_cols=217  Identities=21%  Similarity=0.164  Sum_probs=161.2

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHh--CCccccccCCCCCcHHH-HHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHH
Q psy138           64 TRKTVLHYCAENTILSCAETILEV--APDLIEAADEDGYTPLH-LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT  140 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~l~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  140 (321)
                      .+++.++.|++.|+.+.++.+++.  +.+ ++..|..|.|||| .|+..++.++++.|+++|+    .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            456788888888888888888887  444 5667788888888 7778888888888888876    4567888888887


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc
Q psy138          141 VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA  220 (321)
Q Consensus       141 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  220 (321)
                      . +..+.++.++.........+    .+....                          . .........|.||||.|+.+
T Consensus        91 ~-~~~~~v~~ll~~l~~~~~~~----~~~~~~--------------------------~-~~~~~~~~~G~TpLhlAa~~  138 (743)
T TIGR00870        91 L-EYVDAVEAILLHLLAAFRKS----GPLELA--------------------------N-DQYTSEFTPGITALHLAAHR  138 (743)
T ss_pred             h-ccHHHHHHHHHHHhhccccc----Cchhhh--------------------------c-cccccccCCCCcHHHHHHHh
Confidence            6 23333333333211111000    000000                          0 00112235699999999999


Q ss_pred             CCHHHHHHHHHcCCCccccc--------------CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH
Q psy138          221 GSSDAILALVKAGANVEAHD--------------KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT  286 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  286 (321)
                      |+.+++++|+++|++++.++              ..|.||||.|+..|+.+++++|++ .|+|++.+|..|+||||+|+.
T Consensus       139 ~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~  217 (743)
T TIGR00870       139 QNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVM  217 (743)
T ss_pred             CCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHh
Confidence            99999999999999998653              358999999999999999999999 799999999999999999999


Q ss_pred             cC---------CHHHHHHHHHcCCCC-------CccCCCCCccceeec
Q psy138          287 LG---------HADATTLLLQYGATP-------NRQDRKGRTYEYQWR  318 (321)
Q Consensus       287 ~~---------~~~~~~~Ll~~ga~~-------~~~~~~g~t~l~~~~  318 (321)
                      .+         ...+.+++++.++..       +++|.+|.||||++.
T Consensus       218 ~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~  265 (743)
T TIGR00870       218 ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA  265 (743)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhh
Confidence            86         234667777776654       778999999999853

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=163.96  Aligned_cols=122  Identities=25%  Similarity=0.232  Sum_probs=108.6

Q ss_pred             HHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHH---HHHHHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhc
Q psy138          191 AVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA---ILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLC  266 (321)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~  266 (321)
                      +++++|.+.+.+++..+..|.||||+|+..|+.+.   +++|+++|++++.++ ..|.||||+|+..++.+++++|++..
T Consensus        38 ~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~  117 (166)
T PHA02743         38 EVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQL  117 (166)
T ss_pred             HHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Confidence            45556666777777788889999999999887654   799999999999998 58999999999999999999999546


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Q psy138          267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT  312 (321)
Q Consensus       267 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  312 (321)
                      |++++.++..|.||||+|+..++.+++++|+++|++++.++..|.+
T Consensus       118 gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        118 GVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            9999999999999999999999999999999999999999988864

>KOG0514|consensus

Probab=99.93  E-value=1.3e-25  Score=174.41  Aligned_cols=167  Identities=29%  Similarity=0.485  Sum_probs=149.0

Q ss_pred             CccCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCC
Q psy138          125 VNSQDNEGHSVVHWATVCGEVEALETVLSAG-AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDV  203 (321)
Q Consensus       125 ~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (321)
                      +|..|.+|+|+|||++.++++++|+.|++.| ++++.++..|.||+++++...-       ......+++..|++.| ++
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l-------k~~~d~~vV~~LF~mg-nV  332 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL-------KQPADRTVVERLFKMG-DV  332 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh-------cchhhHHHHHHHHhcc-Cc
Confidence            4667899999999999999999999999988 5789999999999998765321       1244578888888876 56


Q ss_pred             cccC-CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHH
Q psy138          204 NVVD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALF  282 (321)
Q Consensus       204 ~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  282 (321)
                      |.+- ..|+|+|+.|+.+|+.++++.|+..|+|+|.+|.+|.|+|++|+++|+.|++++||...++|+...|.+|.|+|.
T Consensus       333 NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~  412 (452)
T KOG0514|consen  333 NAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALS  412 (452)
T ss_pred             chhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhh
Confidence            6664 679999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHc
Q psy138          283 YAVTLGHADATTLLLQY  299 (321)
Q Consensus       283 ~A~~~~~~~~~~~Ll~~  299 (321)
                      +|...|+.+|.-+|..+
T Consensus       413 IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  413 IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHhcCchHHHHHHHHH
Confidence            99999999999888765

>KOG4369|consensus

Probab=99.93  E-value=3.3e-26  Score=200.08  Aligned_cols=276  Identities=26%  Similarity=0.365  Sum_probs=244.7

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      +++..|.+||.+|+-.|+..+|+-|+..+.+.--..|..+.|+|.+||..|..+++++|+..+.. -..++...+|||.+
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan-kehrnvsDytPlsl  863 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN-KEHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc-ccccchhhcCchhh
Confidence            44667999999999999999999999998876566788999999999999999999999999987 46777888999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCchhhhHhhhccccccc
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQD--NEGHSVVHWATVCGEVEALETVLSAGAEPSTP-DIHGGYPIHYASQMCGHASEM  182 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~  182 (321)
                      |...|.+++++.|+.+|..++.+.  +.|-.||..|...|+.+.++.|++.|.+++.. ..+-+|.|-+++....     
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr-----  938 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR-----  938 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc-----
Confidence            999999999999999998887664  56789999999999999999999999999865 4556677777766433     


Q ss_pred             ccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccccc--CCCCcHHHHHHHcCCHHHHH
Q psy138          183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD--KDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~  260 (321)
                             -+++.+|+...+++..+...|.|||+-++..|.+|+=+.|+..|+|.|...  ....|+|-+++..|+...++
T Consensus       939 -------~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~ 1011 (2131)
T KOG4369|consen  939 -------PEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVP 1011 (2131)
T ss_pred             -------chHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhH
Confidence                   589999999999999999999999999999999999999999999988643  45668999999999999999


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccce
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEY  315 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~  315 (321)
                      .|+. ..+.+..+++.|.|+|.+|+.-|....+..|++++||++..|..-.+++.
T Consensus      1012 ~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~m 1065 (2131)
T KOG4369|consen 1012 KLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTM 1065 (2131)
T ss_pred             HhhC-CccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccH
Confidence            9999 68889999999999999999999999999999999999999887666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=4.5e-23  Score=152.78  Aligned_cols=136  Identities=20%  Similarity=0.199  Sum_probs=118.0

Q ss_pred             ccChhHHHHHHHcCCHHHHH----HHHHcCCCcccccccCCccHHHHHHHcCcHH---HHHHHHHhCCccccccC-CCCC
Q psy138           29 MEGATSLMYAAQQGKDAEVK----AILASRPNAVRERDRTRKTVLHYCAENTILS---CAETILEVAPDLIEAAD-EDGY  100 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~----~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~~~~~~~~~~-~~~~  100 (321)
                      .++.++||.||+.|+.+.++    +|++.+ ..++.+|..|.||||+|+..|+.+   ++++|++.+.+ ++..+ ..|.
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g~   95 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTGN   95 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            45778999999999985444    444444 447888999999999999998765   48999999988 56676 5899


Q ss_pred             cHHHHHHHhCCHHHHHHHHH-cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q psy138          101 TPLHLAAIAGNVPLIHTLLA-HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGG  166 (321)
Q Consensus       101 t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~  166 (321)
                      ||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            99999999999999999995 7999999999999999999999999999999999999988877654

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=151.20  Aligned_cols=129  Identities=21%  Similarity=0.211  Sum_probs=115.1

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcC-----CCcccccccCCccHHHHHHHcCc----HHHHHHHHHhCCccccccCC-
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASR-----PNAVRERDRTRKTVLHYCAENTI----LSCAETILEVAPDLIEAADE-   97 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~-   97 (321)
                      +..|.|+||+|++.|+.++++.|+...     +..++.+|..|.||||+|+..|+    .+++++|++.+++ ++..+. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCCcC
Confidence            456999999999999999999986532     34588899999999999999998    5899999999988 566664 


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHH-cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLA-HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE  157 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~  157 (321)
                      .|.||||+|+..++.+++++|++ .|++++..+..|.|||++|+..++.+++++|++.+..
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            89999999999999999999998 5999999999999999999999999999999987644

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3e-22  Score=159.43  Aligned_cols=155  Identities=14%  Similarity=0.078  Sum_probs=94.4

Q ss_pred             ccCCCCCc-HHHHHHHhCCHHHHHHHHHcCCCCccCC----CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCch
Q psy138           94 AADEDGYT-PLHLAAIAGNVPLIHTLLAHRANVNSQD----NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP  168 (321)
Q Consensus        94 ~~~~~~~t-~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~  168 (321)
                      ..|..+.| +|+.|+..|+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+++|++++..+      
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~------  100 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA------  100 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc------
Confidence            34555554 4566666677888888888888877753    467788888887777777777777766665432      


Q ss_pred             hhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHH
Q psy138          169 IHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH  248 (321)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  248 (321)
                                                            +..|.||||.|+..++.+++++|+++|++++.++..|.||||
T Consensus       101 --------------------------------------~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~  142 (300)
T PHA02884        101 --------------------------------------EEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIE  142 (300)
T ss_pred             --------------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence                                                  123455555555566666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy138          249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA  301 (321)
Q Consensus       249 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga  301 (321)
                      +|+..++.+++..+..   .   ..+..+.+|.+++   ++.+++++|+.+++
T Consensus       143 ~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        143 LALMICNNFLAFMICD---N---EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HHHHhCChhHHHHhcC---C---cccccccChhhhh---ccHHHHHHHHHHHH
Confidence            6666555555433322   1   1244445555543   24566666666654

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=2e-22  Score=150.19  Aligned_cols=136  Identities=24%  Similarity=0.264  Sum_probs=119.4

Q ss_pred             CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHH------cCCCCcccCCCCCchhHHHHhcCC----HHHHHH
Q psy138          159 STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLH------HNVDVNVVDKDGRQPILWAASAGS----SDAILA  228 (321)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~  228 (321)
                      +..+..|.||||.|++            .++.++++.|+.      .+.+++..+..|.||||+|+..|+    .+++++
T Consensus        15 ~~~~~~g~t~Lh~Aa~------------~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741         15 AEKNSEGENFFHEAAR------------CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             hccccCCCCHHHHHHH------------cCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            3456789999999997            445788887753      357888999999999999999998    588999


Q ss_pred             HHHcCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q psy138          229 LVKAGANVEAHDK-DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ  306 (321)
Q Consensus       229 Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~  306 (321)
                      |++.|++++.++. .|.||||+|+..++.+++++|++..|++++.+|..|.|||++|+..++.+++++|++.++....-
T Consensus        83 Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~~~  161 (169)
T PHA02741         83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSRGF  161 (169)
T ss_pred             HHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhcCc
Confidence            9999999999885 99999999999999999999997459999999999999999999999999999999998765433

>KOG0514|consensus

Probab=99.89  E-value=9e-23  Score=158.75  Aligned_cols=162  Identities=29%  Similarity=0.485  Sum_probs=126.3

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh-----CCHHHHHHHHHcCCCCccC-CCC
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA-----GNVPLIHTLLAHRANVNSQ-DNE  131 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~-~~~  131 (321)
                      ++..|.+|+|+||+|+..+++++|+.|++.+.+.++..+.-|+||+++|+..     .+.++|..|...| ++|.+ ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5667888999999999999999999999988888888888899998888753     3677888888765 44443 357


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCC
Q psy138          132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR  211 (321)
Q Consensus       132 ~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  211 (321)
                      |+|+|++|+.+|+.++++.|+..|+                                             |+|..|.+|.
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgA---------------------------------------------dVNiQDdDGS  374 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGA---------------------------------------------DVNIQDDDGS  374 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccC---------------------------------------------CCccccCCcc
Confidence            8888888888888877777766544                                             5555666777


Q ss_pred             chhHHHHhcCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy138          212 QPILWAASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLETLITL  265 (321)
Q Consensus       212 t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  265 (321)
                      |+|+.|+.+|+.|++++|+. -++|+...|.+|.|+|.+|...|+-|+.-+|..+
T Consensus       375 TALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  375 TALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            78888888888888888885 4577777888888888888888888877776653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5.4e-22  Score=145.93  Aligned_cols=131  Identities=21%  Similarity=0.232  Sum_probs=109.0

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHH----cCCCcccccccCCccHHHHHHHcCcH---HHHHHHHHhCCccccccC-CCC
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILA----SRPNAVRERDRTRKTVLHYCAENTIL---SCAETILEVAPDLIEAAD-EDG   99 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~-~~~   99 (321)
                      +.+|.||||+|++.|+...+.....    ..+..+..+|..|.||||+|+..|+.   +++++|++.+.+ ++..+ ..|
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~~~~~g   92 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGKERVFG   92 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccccCCCCC
Confidence            4569999999999998432221111    11122456788999999999999987   468899999988 56666 589


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy138          100 YTPLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPS  159 (321)
Q Consensus       100 ~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~  159 (321)
                      .||||+|+..++.+++++|+++ |++++..+..|.|||++|+..++.+++++|+++|++.+
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999985 99999999999999999999999999999999998764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=4.2e-22  Score=146.47  Aligned_cols=133  Identities=23%  Similarity=0.296  Sum_probs=110.0

Q ss_pred             CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCC-------CCcccCCCCCchhHHHHhcCCHH---HHHH
Q psy138          159 STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV-------DVNVVDKDGRQPILWAASAGSSD---AILA  228 (321)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~---~~~~  228 (321)
                      ...+..|.||||+|++.+.              +..++...+.       .++..+..|.||||+|+..|+.+   ++++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~--------------~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~   76 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGG--------------VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL   76 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCC--------------HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHH
Confidence            3456778999999887532              1222222111       12345788999999999999874   6889


Q ss_pred             HHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q psy138          229 LVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR  305 (321)
Q Consensus       229 Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~  305 (321)
                      |++.|++++.++ ..|.||||+|+..++.+++++|++..|++++.++..|.||||+|+..++.+++++|+++|++.++
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999998 59999999999999999999999855999999999999999999999999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.9e-21  Score=154.77  Aligned_cols=142  Identities=17%  Similarity=0.215  Sum_probs=120.6

Q ss_pred             CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccC----CCCCchhHHHHhcCCHHHHHHHHHcCC
Q psy138          159 STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD----KDGRQPILWAASAGSSDAILALVKAGA  234 (321)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~Ll~~~~  234 (321)
                      ...|..+.+++++++..           ..+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+++|+
T Consensus        26 ~~~d~~~~~~lL~~A~~-----------~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA   94 (300)
T PHA02884         26 KKKNKICIANILYSSIK-----------FHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA   94 (300)
T ss_pred             hccCcCCCCHHHHHHHH-----------cCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34567777777766654           234899999999999999874    589999999999999999999999999


Q ss_pred             Ccccc-cCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcc
Q psy138          235 NVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY  313 (321)
Q Consensus       235 ~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~  313 (321)
                      +++.. +..|.||||.|+..++.+++++|++ .|++++.+|..|.||+|+|++.++.+++..+.  |+.   .+..+.+|
T Consensus        95 DVN~~~~~~g~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~  168 (300)
T PHA02884         95 DVNRYAEEAKITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHP  168 (300)
T ss_pred             CcCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccCh
Confidence            99986 4689999999999999999999999 79999999999999999999999999886665  332   45666777


Q ss_pred             ceee
Q psy138          314 EYQW  317 (321)
Q Consensus       314 l~~~  317 (321)
                      .+++
T Consensus       169 ~~~~  172 (300)
T PHA02884        169 KKIL  172 (300)
T ss_pred             hhhh
Confidence            7664

>KOG0512|consensus

Probab=99.87  E-value=2.5e-21  Score=135.24  Aligned_cols=144  Identities=28%  Similarity=0.329  Sum_probs=129.3

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      -.-.+..|+..+....|+.||+..+..++.+|.+|.||||.|+.+|+.+|++.|+..++. .+.+...|+||||-||..+
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhccc
Confidence            445688999999999999999999999999999999999999999999999999999988 6888999999999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH-HHHHHH-HcCCCCCCCCCCCCchhhhHhhh
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE-ALETVL-SAGAEPSTPDIHGGYPIHYASQM  175 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~-i~~~L~-~~~~~~~~~~~~~~~~l~~~~~~  175 (321)
                      +.+++.+|+++|+++++......||||.|+...+.. .+.+|+ +.+..+...+..+.+|+.+|-+.
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999999999999999999999999977654 455544 45677788888999999988764

>KOG3676|consensus

Probab=99.87  E-value=4.8e-21  Score=164.09  Aligned_cols=211  Identities=24%  Similarity=0.324  Sum_probs=134.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCC--------CcccccccCCccHHHHHHH---cCcHHHHHHHHHhCCcccccc----CC
Q psy138           33 TSLMYAAQQGKDAEVKAILASRP--------NAVRERDRTRKTVLHYCAE---NTILSCAETILEVAPDLIEAA----DE   97 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~--------~~~~~~~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~----~~   97 (321)
                      .++..|...+....+..++....        ..++.+...|.|+||.|..   .++.++++.|++..+..++..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            66777777777777776665442        2355666778888888876   355578888888776654433    34


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      .|.||||.|+.+.+.++|++|++.|+|++.+-...   ++.+                     .|..+.           
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~---FF~~---------------------~dqk~~-----------  227 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGA---FFCP---------------------DDQKAS-----------  227 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc---ccCc---------------------cccccc-----------
Confidence            57788888888888888888888888776542110   0000                     000000           


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                               +           +..+..-.-..|..||..|+..++.+++++|+++|+|++.+|..|+|.||..+..-..+
T Consensus       228 ---------r-----------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~  287 (782)
T KOG3676|consen  228 ---------R-----------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTE  287 (782)
T ss_pred             ---------c-----------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHH
Confidence                     0           00111111234666777777777777777777777777777777777777777776677


Q ss_pred             HHHHHHhhcCCC--cccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          258 CLETLITLCGAD--VDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       258 ~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      +..++++ +|++  ...+|..|.|||.+|++.|..+|++.+++.
T Consensus       288 My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  288 MYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            7777777 5666  666677777777777777777777777766

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=4.5e-21  Score=127.33  Aligned_cols=89  Identities=37%  Similarity=0.544  Sum_probs=83.1

Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy138          214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT  293 (321)
Q Consensus       214 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  293 (321)
                      ||.|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7899999999999999999988877    8899999999999999999999 7999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccC
Q psy138          294 TLLLQYGATPNRQD  307 (321)
Q Consensus       294 ~~Ll~~ga~~~~~~  307 (321)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.85  E-value=1.8e-21  Score=147.20  Aligned_cols=135  Identities=24%  Similarity=0.401  Sum_probs=118.7

Q ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy138           39 AQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL  118 (321)
Q Consensus        39 ~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  118 (321)
                      |+.|+.-.|+..|+....+++.-|..|.+|||+||+.|+..+++.|+.+|+. ++..+.-..||||+|+..|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHH
Confidence            4555554555667777777888889999999999999999999999999988 677787788999999999999999999


Q ss_pred             HHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhh
Q psy138          119 LAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ  174 (321)
Q Consensus       119 l~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~  174 (321)
                      ++..+++|..++.|.|||||||..|...+.+-|+..|+.++..++.|.+|+..+..
T Consensus        87 l~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            99999999999999999999999999999999999999999999999999987754

>KOG0512|consensus

Probab=99.85  E-value=6.3e-20  Score=128.30  Aligned_cols=145  Identities=26%  Similarity=0.354  Sum_probs=120.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      ..+.+|+..+....|+.|++..+.-++.+|.+++||||-|+.+|+.+|++.|+..|++++.++..|.||||.||..++++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            46788999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHH-HcCCCCcccCCCCCchhHHHHhcCC
Q psy138          147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGS  222 (321)
Q Consensus       147 i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~t~l~~a~~~~~  222 (321)
                      ++.+|+++|++++.......||||.++..           +.+...+.+|+ ..++.+...+..+.||+.+|-+.+-
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~-----------rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGN-----------RNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcc-----------cchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999999999998888888888888764           22334444443 4566666677777777777766543

>KOG0195|consensus

Probab=99.83  E-value=7.6e-21  Score=143.86  Aligned_cols=124  Identities=31%  Similarity=0.453  Sum_probs=115.1

Q ss_pred             HHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCC
Q psy138          195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID  274 (321)
Q Consensus       195 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  274 (321)
                      ||-+..-+.|.-|..|.+|||+|++.|+..+++.|+.+|+.+|..+....||||+|+.+|+-++++.|++ ..+|+|..+
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavn   97 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVN   97 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH-Hhcccchhh
Confidence            3334445677788899999999999999999999999999999999999999999999999999999999 599999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeecc
Q psy138          275 TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRS  319 (321)
Q Consensus       275 ~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~~  319 (321)
                      ..|+|||||||-.|...+++-|+..||-+++-|++|.||++.++.
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            999999999999999999999999999999999999999987653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=5.3e-19  Score=117.32  Aligned_cols=87  Identities=36%  Similarity=0.571  Sum_probs=46.8

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHH
Q psy138           69 LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL  148 (321)
Q Consensus        69 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~  148 (321)
                      ||+|++.|+.+++++|++.+... +.    |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            45555555555555555544332 11    45555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCCCCC
Q psy138          149 ETVLSAGAEPST  160 (321)
Q Consensus       149 ~~L~~~~~~~~~  160 (321)
                      ++|+++|++++.
T Consensus        76 ~~Ll~~g~~~~~   87 (89)
T PF12796_consen   76 KLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHTTT-TTS
T ss_pred             HHHHHcCCCCCC
Confidence            555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=8.8e-18  Score=119.46  Aligned_cols=122  Identities=38%  Similarity=0.579  Sum_probs=111.5

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .+|.||||+|+..|+.+++++|++.+.. ...++..|.||+|.|+..++.+++++|++.+.. .+..+..+.||+|+|+.
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHH
Confidence            5599999999999999999999988876 477788999999999999999999999999875 56667889999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHH
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL  152 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~  152 (321)
                      .++.+++++|++++.+.+..+..+.||+++|+..++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999989999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=8.3e-17  Score=114.39  Aligned_cols=86  Identities=40%  Similarity=0.616  Sum_probs=41.1

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC
Q psy138          210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH  289 (321)
Q Consensus       210 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  289 (321)
                      |.+|+|.|+..++.+++++|++.|++++..+..|.||+|.|+..++.+++++|++ .+.+++..+..|.||+++|...++
T Consensus        40 g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          40 GRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCC
Confidence            3344444444444444444444444444444444445555555555555555544 344444444444555555555555


Q ss_pred             HHHHHHH
Q psy138          290 ADATTLL  296 (321)
Q Consensus       290 ~~~~~~L  296 (321)
                      .+++++|
T Consensus       119 ~~~~~~L  125 (126)
T cd00204         119 LEVVKLL  125 (126)
T ss_pred             HHHHHHh
Confidence            5444444

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.73  E-value=1.7e-16  Score=136.55  Aligned_cols=147  Identities=24%  Similarity=0.310  Sum_probs=104.3

Q ss_pred             cccChhHHHHHHHcCC---HHHHHHHHHcCCCcccc----cccCCccHHHHHHHcCcHHHHHHHHHhCCcccccc-----
Q psy138           28 TMEGATSLMYAAQQGK---DAEVKAILASRPNAVRE----RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA-----   95 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~---~~~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-----   95 (321)
                      ...|.|.||.|..+.+   .++++.||+..|..++.    ....|.||||+|+.+.+.++|++|++.++++..+.     
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            5679999999998443   48899999988865443    34689999999999999999999999998852211     


Q ss_pred             ---C--------------CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-
Q psy138           96 ---D--------------EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE-  157 (321)
Q Consensus        96 ---~--------------~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~-  157 (321)
                         |              ..|..||.+|+-.++.+++++|+++|+|++.+|..|+|.||..+..-..+|...++++|++ 
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence               1              1245677777777777777777777777777777777777777666666666666666665 


Q ss_pred             -CCCCCCCCCchhhhHhh
Q psy138          158 -PSTPDIHGGYPIHYASQ  174 (321)
Q Consensus       158 -~~~~~~~~~~~l~~~~~  174 (321)
                       ....+..|.|||..|+.
T Consensus       300 l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             cccccccCCCChHHHHHH
Confidence             44445555555555544

>KOG4214|consensus

Probab=99.73  E-value=2.6e-17  Score=102.65  Aligned_cols=102  Identities=34%  Similarity=0.456  Sum_probs=92.3

Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy138          213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA  292 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  292 (321)
                      -+.+++++|..+-|+..+..|.++|..- .|++|||+|+.+|+.+++++|+. .|++++.+|+.|.|||--|+-.|+...
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHH
Confidence            4678899999999999999998777543 89999999999999999999999 699999999999999999999999999


Q ss_pred             HHHHHHcCCCCCccCCCCCcccee
Q psy138          293 TTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       293 ~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      +++|++.||+-.++.-+|.+.+..
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhh
Confidence            999999999999999999877654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=1.3e-14  Score=114.48  Aligned_cols=130  Identities=38%  Similarity=0.574  Sum_probs=95.5

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC-----HHHHHHHHHcCCCCCCCCCCCCc
Q psy138           93 EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE-----VEALETVLSAGAEPSTPDIHGGY  167 (321)
Q Consensus        93 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~i~~~L~~~~~~~~~~~~~~~~  167 (321)
                      ...+..+.++++.++..++.+++++++..|++++..+..|.||+++|+..++     .++++.|++.|.+          
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~----------  136 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD----------  136 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC----------
Confidence            4455567788888888888888888888888888888888888888888887     4444444444332          


Q ss_pred             hhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHH
Q psy138          168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL  247 (321)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  247 (321)
                                                      ....+..+..|.||||+|+..|+.++++.|++.|++++..+..|.|++
T Consensus       137 --------------------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l  184 (235)
T COG0666         137 --------------------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL  184 (235)
T ss_pred             --------------------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcch
Confidence                                            003444567777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHh
Q psy138          248 HCAASRGHRECLETLIT  264 (321)
Q Consensus       248 ~~a~~~~~~~~~~~Ll~  264 (321)
                      +.|+..++.++++.+++
T Consensus       185 ~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         185 DPAAKNGRIELVKLLLD  201 (235)
T ss_pred             hhhcccchHHHHHHHHh
Confidence            77777777777777777

>KOG4214|consensus

Probab=99.65  E-value=1.9e-15  Score=94.41  Aligned_cols=97  Identities=28%  Similarity=0.383  Sum_probs=45.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHH
Q psy138           35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPL  114 (321)
Q Consensus        35 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  114 (321)
                      +.+++++|.++-|+..+..+-+ ++..- .|++|||+|+-.|..+++++|+..+++ ++..|+.|.|||..|+..|+.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHH
Confidence            3444555555555555444421 22221 344555555555555555555555544 34445555555555555555555


Q ss_pred             HHHHHHcCCCCccCCCCCCc
Q psy138          115 IHTLLAHRANVNSQDNEGHS  134 (321)
Q Consensus       115 v~~Ll~~~~~~~~~~~~~~t  134 (321)
                      |++|+++|++-.....+|.+
T Consensus        83 VklLL~~GAdrt~~~PdG~~  102 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTA  102 (117)
T ss_pred             HHHHHHcCcccceeCCCchh
Confidence            55555555444444444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=4.5e-15  Score=117.18  Aligned_cols=127  Identities=35%  Similarity=0.499  Sum_probs=119.1

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCc-----HHHHHHHHHhCC--ccccccCCCCC
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTI-----LSCAETILEVAP--DLIEAADEDGY  100 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~--~~~~~~~~~~~  100 (321)
                      ...+.++++.++..++.+.+++++..+.. ++.++..|.||||+|+..++     .++++.|++.+.  ......+..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34488999999999999999999998888 49999999999999999999     999999999999  66788899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q psy138          101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG  155 (321)
Q Consensus       101 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~  155 (321)
                      ||||+|+..|+.++++.|++.|++++..+..|.|+++.|+..++.++++.++..+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999976

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=2e-15  Score=135.20  Aligned_cols=105  Identities=27%  Similarity=0.380  Sum_probs=99.5

Q ss_pred             chhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHH
Q psy138          212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD  291 (321)
Q Consensus       212 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  291 (321)
                      ..|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            35889999999999999999999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCCCccCCCCCccceee
Q psy138          292 ATTLLLQY-------GATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       292 ~~~~Ll~~-------ga~~~~~~~~g~t~l~~~  317 (321)
                      ++++|+++       |++++..+..|.+|+...
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999999       999999999999887643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=3.5e-16  Score=92.88  Aligned_cols=49  Identities=41%  Similarity=0.618  Sum_probs=25.5

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       268 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|.+|+||+|+
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence            6777777777777777777777777777777777777777777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.58  E-value=7.5e-15  Score=86.84  Aligned_cols=54  Identities=39%  Similarity=0.607  Sum_probs=37.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy138          243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLL  297 (321)
Q Consensus       243 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  297 (321)
                      |+||+|+|+..|+.+++++|++ .|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677788888888888888877 47777777777888888888888877777775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=2.8e-15  Score=89.00  Aligned_cols=55  Identities=45%  Similarity=0.665  Sum_probs=29.6

Q ss_pred             HHHcC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHH
Q psy138          229 LVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA  284 (321)
Q Consensus       229 Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  284 (321)
                      |+++| ++++..|..|.||||+|+.+|+.+++++|++ .|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            45666 7888888888888888888888888888886 7888888888888888886

>KOG1710|consensus

Probab=99.57  E-value=3.3e-14  Score=108.05  Aligned_cols=124  Identities=24%  Similarity=0.328  Sum_probs=114.6

Q ss_pred             cChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh
Q psy138           30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA  109 (321)
Q Consensus        30 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  109 (321)
                      .-.++|..++..|+.+-+..||..-.. ++.+|..|.|+|.-|+..|+.++++.|++.+.++....+..++||||+|+.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            356899999999999999999987443 8899999999999999999999999999999998888888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHc
Q psy138          110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA  154 (321)
Q Consensus       110 ~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~  154 (321)
                      |+.++.+.|++.|+.+...+.-|+|+-.+|+.-|+.+++..+-.+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999999999998876543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=2.1e-14  Score=84.89  Aligned_cols=53  Identities=38%  Similarity=0.721  Sum_probs=25.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHH
Q psy138           99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV  151 (321)
Q Consensus        99 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L  151 (321)
                      |.||||+|+..|+.+++++|+++|.+++..|..|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555554

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=2.1e-13  Score=122.35  Aligned_cols=104  Identities=26%  Similarity=0.306  Sum_probs=91.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHH
Q psy138           68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA  147 (321)
Q Consensus        68 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i  147 (321)
                      .|+.|+..|+.+.++.|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            58889999999999999999887 67888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCCCCCCCCCCchhhhH
Q psy138          148 LETVLSA-------GAEPSTPDIHGGYPIHYA  172 (321)
Q Consensus       148 ~~~L~~~-------~~~~~~~~~~~~~~l~~~  172 (321)
                      +++|+++       |++....+..|.+|+...
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999988       777776666666665544

>KOG0515|consensus

Probab=99.47  E-value=2.7e-13  Score=111.41  Aligned_cols=124  Identities=23%  Similarity=0.282  Sum_probs=100.7

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      ++-.-+|.-|+..|.+|+|+.++.+-.+ +..-+..|-|+||-|+-.||.+||++|++.+.. ++..|.+|+||||+|+.
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAAS  625 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhh
Confidence            3345567888999999999999877655 666677899999999999999999999999988 78889999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCC-CCCCcHHHHHHh--cCCHHHHHHHHHc
Q psy138          109 AGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATV--CGEVEALETVLSA  154 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~~--~~~~~i~~~L~~~  154 (321)
                      +++..+++.|++.|+-+.+.+ .++.|+...|-.  .|...+.+||..-
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999988776544 466787766543  5777888888754

>KOG1710|consensus

Probab=99.47  E-value=2.7e-13  Score=103.18  Aligned_cols=99  Identities=26%  Similarity=0.344  Sum_probs=51.8

Q ss_pred             HHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCC
Q psy138          196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVID  274 (321)
Q Consensus       196 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  274 (321)
                      |++.-..++..|.+|.++|..|+..|+.++++.|++.|+|+|.. +..+.||||+|+..|+.++.+.|++ .|+.....+
T Consensus        31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllld-aGa~~~~vN  109 (396)
T KOG1710|consen   31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLD-AGARMYLVN  109 (396)
T ss_pred             HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHh-ccCcccccc
Confidence            33333334555555555555555555555555555555555543 3445555555555555555555555 455555555


Q ss_pred             CCCCcHHHHHHHcCCHHHHHH
Q psy138          275 TNGCSALFYAVTLGHADATTL  295 (321)
Q Consensus       275 ~~g~t~l~~A~~~~~~~~~~~  295 (321)
                      .-|+|+-.+|+--|+-+.+..
T Consensus       110 svgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen  110 SVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             chhhhHHHHHHHhcchHHHHH
Confidence            555555555555555555433

>KOG0515|consensus

Probab=99.46  E-value=1.9e-13  Score=112.21  Aligned_cols=102  Identities=26%  Similarity=0.349  Sum_probs=76.2

Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy138          214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT  293 (321)
Q Consensus       214 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  293 (321)
                      |.-|+..|-+|+|+..+..--|+...+.+|-|+||-|+..|+.+|++||++ +|+++|..|.+||||||.|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchHHH
Confidence            344666777888887777777777777788888888888888888888888 6888888888888888888888888888


Q ss_pred             HHHHHcCCCCCccC-CCCCcccee
Q psy138          294 TLLLQYGATPNRQD-RKGRTYEYQ  316 (321)
Q Consensus       294 ~~Ll~~ga~~~~~~-~~g~t~l~~  316 (321)
                      +.|++.||-+.... +++.|+.+-
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             HHHHhccceEEeeecccccchhhh
Confidence            88888887654433 455665543

>KOG0782|consensus

Probab=99.21  E-value=1.8e-10  Score=95.95  Aligned_cols=119  Identities=22%  Similarity=0.274  Sum_probs=107.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCc-cccccCCCCCcHHHHHHHhCCHH
Q psy138           35 LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD-LIEAADEDGYTPLHLAAIAGNVP  113 (321)
Q Consensus        35 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~~A~~~~~~~  113 (321)
                      |..|+..+++-.++.....++. +..++.+..+.||+|++.|+-++|+|++++++. +.+..+++|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            6788888998777777777777 677788899999999999999999999999874 45667899999999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHc
Q psy138          114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA  154 (321)
Q Consensus       114 ~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~  154 (321)
                      +.++|++.|+.+...|..|.||-..|-..|+.+++.+|-.+
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999999999999999999999998865

>KOG0506|consensus

Probab=99.10  E-value=1.3e-10  Score=94.62  Aligned_cols=92  Identities=32%  Similarity=0.417  Sum_probs=87.4

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC
Q psy138          209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG  288 (321)
Q Consensus       209 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  288 (321)
                      .+..++++|++.|.+..++.+.-.|.|++..|.+.+|+||.|+..|+++++++|++..+++++.+|.+|+|||.=|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcC
Q psy138          289 HADATTLLLQYG  300 (321)
Q Consensus       289 ~~~~~~~Ll~~g  300 (321)
                      +.+++++|-+.-
T Consensus       585 h~~v~k~L~~~~  596 (622)
T KOG0506|consen  585 HKEVVKLLEEAQ  596 (622)
T ss_pred             cHHHHHHHHHHh
Confidence            999999998763

>PF13606 Ank_3: Ankyrin repeat

Probab=99.09  E-value=1.7e-10  Score=58.18  Aligned_cols=29  Identities=34%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          276 NGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       276 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888887775

>KOG0783|consensus

Probab=99.07  E-value=4.7e-11  Score=103.58  Aligned_cols=83  Identities=29%  Similarity=0.443  Sum_probs=60.8

Q ss_pred             CcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHH
Q psy138          203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL  281 (321)
Q Consensus       203 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  281 (321)
                      .+..|..|+++||+++..+..++++||+++|+++..+| ..|+||||.|+.+|+++++-.|+. +|..+.++|++|..||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCceEEecccCCCHH
Confidence            45566777777777777777777777777777777776 457777777777777777777777 5777777777777777


Q ss_pred             HHHHH
Q psy138          282 FYAVT  286 (321)
Q Consensus       282 ~~A~~  286 (321)
                      ++.++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            76655

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.07  E-value=3.2e-10  Score=59.12  Aligned_cols=33  Identities=42%  Similarity=0.658  Sum_probs=26.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q psy138          276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDR  308 (321)
Q Consensus       276 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~  308 (321)
                      +|.||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478888888888888888888888888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=99.04  E-value=1.2e-09  Score=89.60  Aligned_cols=86  Identities=28%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHH
Q psy138          213 PILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD  291 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  291 (321)
                      -||..++.|+.+..-.|+..|++.|..+ ..|.||||.|++.|+.--+++|+- +|+|+...|.+|.||+.+|...|+-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            4899999999999999999999999987 679999999999999999999998 79999999999999999999999988


Q ss_pred             HHHHHHHc
Q psy138          292 ATTLLLQY  299 (321)
Q Consensus       292 ~~~~Ll~~  299 (321)
                      +...|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            88777764

>KOG0506|consensus

Probab=98.99  E-value=5.7e-10  Score=91.02  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=65.7

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .++...+.+|++.|++..++.+.-.+.+ ++.+|.+..|+||+|+..|+++++++|++.....+...|..|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            4455667777777777777777666655 667777777777777777777777777777666666777777777777777


Q ss_pred             hCCHHHHHHHHHc
Q psy138          109 AGNVPLIHTLLAH  121 (321)
Q Consensus       109 ~~~~~~v~~Ll~~  121 (321)
                      .++.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            7777777777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=9.4e-10  Score=55.47  Aligned_cols=29  Identities=55%  Similarity=0.880  Sum_probs=18.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCc
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVN  126 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  126 (321)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            35666666666666666666666666654

>KOG0783|consensus

Probab=98.96  E-value=5.8e-10  Score=97.03  Aligned_cols=100  Identities=25%  Similarity=0.340  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHc-CCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q psy138           42 GKDAEVKAILAS-RPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA  120 (321)
Q Consensus        42 g~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  120 (321)
                      +....++-.++. .....+.+|..|.|+||+|+..+..++++||+++|.++.-...+.|+||||-|+..|+++++..|++
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            333344555543 4455788899999999999999999999999999988665656779999999999999999999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHh
Q psy138          121 HRANVNSQDNEGHSVVHWATV  141 (321)
Q Consensus       121 ~~~~~~~~~~~~~t~l~~a~~  141 (321)
                      +|+.+...|+.|..||...++
T Consensus       108 ~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCceEEecccCCCHHHHHhh
Confidence            999999999999999988776

>KOG0818|consensus

Probab=98.87  E-value=1.4e-08  Score=83.49  Aligned_cols=88  Identities=27%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      .-||.+++.|+.+..--|+..|++....-.+.|.||||.|++.|+..-+++|+-+|+++...|..|+||+.+|-..|+.+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            35899999999999999999999865566678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q psy138          147 ALETVLSA  154 (321)
Q Consensus       147 i~~~L~~~  154 (321)
                      +.+.|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            98888875

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.87  E-value=5.3e-09  Score=54.45  Aligned_cols=32  Identities=47%  Similarity=0.773  Sum_probs=22.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccCC
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD  129 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  129 (321)
                      +|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777766554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.80  E-value=1.2e-08  Score=85.41  Aligned_cols=88  Identities=26%  Similarity=0.358  Sum_probs=55.2

Q ss_pred             HHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCC--cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          227 LALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD--VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       227 ~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      +-....|.++-.++.+..+.||+|++.|+-++++|+++ +|-.  ++..|..|.|+||-|+..++..++++|++.||.+.
T Consensus       883 qE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyild-h~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  883 QETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILD-HGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             HHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHh-cCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe
Confidence            33344556666666666666666666666666666666 3322  44455666666666666666666666666666666


Q ss_pred             ccCCCCCccce
Q psy138          305 RQDRKGRTYEY  315 (321)
Q Consensus       305 ~~~~~g~t~l~  315 (321)
                      ..|..|+||-.
T Consensus       962 ktd~kg~tp~e  972 (1004)
T KOG0782|consen  962 KTDSKGKTPQE  972 (1004)
T ss_pred             ecccCCCChHH
Confidence            66666666643

>KOG0705|consensus

Probab=98.75  E-value=3.8e-08  Score=82.56  Aligned_cols=90  Identities=36%  Similarity=0.506  Sum_probs=77.1

Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCc--c--cccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC
Q psy138          213 PILWAASAGSSDAILALVKAGANV--E--AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG  288 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~~~~~--~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  288 (321)
                      -|.-|+.-..+..+-.|+.+|...  +  ..+.+|.|+||+|+..|++.+.++|+- +|+|+-.+|..|+|+|.||...|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            355666677777888888887442  2  235678999999999999999999997 79999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCC
Q psy138          289 HADATTLLLQYGATP  303 (321)
Q Consensus       289 ~~~~~~~Ll~~ga~~  303 (321)
                      ..+++..|+++|+..
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999999653

>KOG3609|consensus

Probab=98.72  E-value=8.7e-08  Score=84.35  Aligned_cols=122  Identities=23%  Similarity=0.304  Sum_probs=103.3

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPN---AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +.--+..|+..|+...|++.++....   .++..|.-|.++|+.|+.+.+.|++++|+++....        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            55668899999999999999987654   47889999999999999999999999999987542        46999999


Q ss_pred             HhCCHHHHHHHHHcCCCC----------ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q psy138          108 IAGNVPLIHTLLAHRANV----------NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST  160 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~----------~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~  160 (321)
                      ..|..++|+.++.+....          ......+-||+..|+..+++||++.|+.+|..+..
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999999874332          12234567999999999999999999999988754

>KOG0522|consensus

Probab=98.65  E-value=1.2e-07  Score=79.04  Aligned_cols=87  Identities=32%  Similarity=0.497  Sum_probs=63.7

Q ss_pred             chhHHHHhcCCHHHHHHHH--HcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC
Q psy138          212 QPILWAASAGSSDAILALV--KAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH  289 (321)
Q Consensus       212 t~l~~a~~~~~~~~~~~Ll--~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  289 (321)
                      .|+|.++.....+-+...+  +.+..++..|..|+||||.|+..|+.+.++.|+. .|+|+..+++.|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCC
Confidence            3577777776666655433  3345566677778888888888888888888888 688888888888888888888888


Q ss_pred             HHHHHHHHHc
Q psy138          290 ADATTLLLQY  299 (321)
Q Consensus       290 ~~~~~~Ll~~  299 (321)
                      .+++.-++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            7766655543

>KOG2384|consensus

Probab=98.61  E-value=1.8e-07  Score=67.49  Aligned_cols=64  Identities=28%  Similarity=0.373  Sum_probs=40.4

Q ss_pred             CCCcccCCCCCchhHHHHhcCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          201 VDVNVVDKDGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       201 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      .++|.+|..|.|+++.|+..|..+.+.+|+.+| +++...|..|.+++.+|-+.|..++++.|.+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHH
Confidence            355566666666666666666666666666666 5566666666666666666666666666666

>KOG0522|consensus

Probab=98.54  E-value=3e-07  Score=76.74  Aligned_cols=88  Identities=24%  Similarity=0.420  Sum_probs=76.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC
Q psy138           33 TSLMYAAQQGKDAEVKAILASR-PNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN  111 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~  111 (321)
                      .|+|.++...+.+.+...+... ...++.+|..|.||||+|+..|+.+.++.|+..+++ ....+..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            5699999999988877755433 344788899999999999999999999999999998 67889999999999999999


Q ss_pred             HHHHHHHHHc
Q psy138          112 VPLIHTLLAH  121 (321)
Q Consensus       112 ~~~v~~Ll~~  121 (321)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9988877765

>KOG3609|consensus

Probab=98.46  E-value=7.7e-07  Score=78.61  Aligned_cols=132  Identities=18%  Similarity=0.147  Sum_probs=95.7

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHH
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPD---LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT  140 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  140 (321)
                      .+.--...|+..|+...|+..++....   .++..|.-|.++|+.|+.+.+.+++++|++++...       ..+|.+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            344567889999999999999987654   36788889999999999999999999999986544       35899999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc
Q psy138          141 VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA  220 (321)
Q Consensus       141 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  220 (321)
                      ..|..++++.++.+.........                                   .+......-..+.||+..|+..
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~-----------------------------------~~d~~~~~ft~ditPliLAAh~  141 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLER-----------------------------------SGDANSPHFTPDITPLMLAAHL  141 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhcc-----------------------------------ccccCcccCCCCccHHHHHHHh
Confidence            99999999999987443321110                                   0000111123355777777777


Q ss_pred             CCHHHHHHHHHcCCCcc
Q psy138          221 GSSDAILALVKAGANVE  237 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~  237 (321)
                      ++.|++++|+++|+.+.
T Consensus       142 NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  142 NNFEILQCLLTRGHCIP  158 (822)
T ss_pred             cchHHHHHHHHcCCCCC
Confidence            77777777777776643

>KOG0705|consensus

Probab=98.46  E-value=8.4e-07  Score=74.77  Aligned_cols=92  Identities=27%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcc---ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           68 VLHYCAENTILSCAETILEVAPDL---IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        68 ~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      -|..|+....+..+-+|+.++...   ....+.+|.|+||+|++.|+..+.++|+=+|+++-.+|..|+|+|.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            456677777888888888887532   23445677999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCC
Q psy138          145 VEALETVLSAGAEPS  159 (321)
Q Consensus       145 ~~i~~~L~~~~~~~~  159 (321)
                      .+++..|+.+|....
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999987643

>KOG2384|consensus

Probab=98.46  E-value=1.4e-06  Score=63.03  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=36.3

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH  121 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  121 (321)
                      ++.+|.+|+|+++.|+..|+.+.+.||+.++...+...+..+.+++.+|-+.|..++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4555555555555555555555555555555444555555555555555555555555555554

>KOG0511|consensus

Probab=98.44  E-value=1.6e-06  Score=69.46  Aligned_cols=82  Identities=17%  Similarity=0.071  Sum_probs=65.1

Q ss_pred             ccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHH
Q psy138           25 VHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLH  104 (321)
Q Consensus        25 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  104 (321)
                      ........--|..||+.|+.+.|++|++.|- +++..|....+||.+|+..||.+++++|+++|+. -..-..+|.-++ 
T Consensus        30 ~~~~~~~f~elceacR~GD~d~v~~LVetgv-nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~-  106 (516)
T KOG0511|consen   30 VPLKKVPFGELCEACRAGDVDRVRYLVETGV-NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCH-  106 (516)
T ss_pred             cccccCchHHHHHHhhcccHHHHHHHHHhCC-CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhh-
Confidence            3333344667999999999999999999554 4999999999999999999999999999999987 344455676664 


Q ss_pred             HHHHh
Q psy138          105 LAAIA  109 (321)
Q Consensus       105 ~A~~~  109 (321)
                      |++.+
T Consensus       107 YgaLn  111 (516)
T KOG0511|consen  107 YGALN  111 (516)
T ss_pred             hhhhh
Confidence            44433

>KOG0520|consensus

Probab=98.36  E-value=2e-07  Score=83.99  Aligned_cols=131  Identities=18%  Similarity=0.188  Sum_probs=103.5

Q ss_pred             ccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcH
Q psy138           23 KKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTP  102 (321)
Q Consensus        23 ~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  102 (321)
                      ........|.+.+|.++..++.-+++.+++-........|.+|.-.+|+ |..++++..-+++.....-++..|..|+||
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            3334456799999999999999999999986333345567778888888 445667777777766666678899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCc------cCCCCCCcHHHHHHhcCCHHHHHHHHHc
Q psy138          103 LHLAAIAGNVPLIHTLLAHRANVN------SQDNEGHSVVHWATVCGEVEALETVLSA  154 (321)
Q Consensus       103 l~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~i~~~L~~~  154 (321)
                      ||+|...|+..++..|++.|++..      ..+..|.|+-..|-..|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998766543      2334688999999999999888888765

>KOG0511|consensus

Probab=98.34  E-value=4.1e-06  Score=67.16  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA  139 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  139 (321)
                      --|..||+.|..+.+++|++.|.. ++..|....+||.+|+.+|+.++|++|+++|+-.+.-...|..++.-|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            357778888888888888886655 677777778888888888888888888888877666556666655443

>KOG0521|consensus

Probab=98.27  E-value=1.1e-06  Score=79.50  Aligned_cols=88  Identities=34%  Similarity=0.409  Sum_probs=76.2

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHc
Q psy138          208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL  287 (321)
Q Consensus       208 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  287 (321)
                      ..|.+++|.|+..+..-+.++|++.|+++|..|..|++|+|.+...|+......+++ .|++.++.+.+|.+|+.+|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhhh
Confidence            457899999999999999999999999999999999999999999999999999998 7999999999999999999776


Q ss_pred             CCHHHHHHH
Q psy138          288 GHADATTLL  296 (321)
Q Consensus       288 ~~~~~~~~L  296 (321)
                      .+.+++-++
T Consensus       733 ~~~d~~~l~  741 (785)
T KOG0521|consen  733 ANADIVLLL  741 (785)
T ss_pred             ccccHHHHH
Confidence            555544333

>KOG0521|consensus

Probab=98.14  E-value=2.8e-06  Score=77.01  Aligned_cols=84  Identities=25%  Similarity=0.354  Sum_probs=50.5

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG  143 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  143 (321)
                      .|.|+||.|+.++..-++++|++++.+ ++..+..|.+|+|.+...|+...+..|+++|++.+..+..|.+|+.+|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            345666666666666666666666655 5556666666666666666666666666666666666666666666665544


Q ss_pred             CHHHH
Q psy138          144 EVEAL  148 (321)
Q Consensus       144 ~~~i~  148 (321)
                      +.+++
T Consensus       734 ~~d~~  738 (785)
T KOG0521|consen  734 NADIV  738 (785)
T ss_pred             cccHH
Confidence            44443

>KOG0520|consensus

Probab=97.94  E-value=7.5e-06  Score=74.19  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=88.7

Q ss_pred             ccCCCCCchhHHHHhcCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHH
Q psy138          205 VVDKDGRQPILWAASAGSSDAILALVKA-GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY  283 (321)
Q Consensus       205 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  283 (321)
                      .....+.+.+|.++..+...+++.+++- |......+.+|.-.+|+ |..+..++..+++...|..++++|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3456788999999999999999999985 66566677888888888 446667777777776899999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC------ccCCCCCccceee
Q psy138          284 AVTLGHADATTLLLQYGATPN------RQDRKGRTYEYQW  317 (321)
Q Consensus       284 A~~~~~~~~~~~Ll~~ga~~~------~~~~~g~t~l~~~  317 (321)
                      |+.+|+..++.-|++.|++..      ..+-.|.|+.+..
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la  687 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLA  687 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhh
Confidence            999999999999999887653      2223455555443

>smart00248 ANK ankyrin repeats

Probab=97.48  E-value=0.00028  Score=34.73  Aligned_cols=28  Identities=36%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          277 GCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       277 g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      |.||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5677777777777777777777776543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.31  E-value=0.00047  Score=57.78  Aligned_cols=61  Identities=23%  Similarity=0.256  Sum_probs=44.3

Q ss_pred             CHHHHHHHHhhcCCCcccC------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          255 HRECLETLITLCGADVDVI------DTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       255 ~~~~~~~Ll~~~~~~~~~~------~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      -...+.+|.+ ++.+.|..      +..--|+||+|+..|..+++.+||+.|+|+..+|..|+||-+.
T Consensus       403 ~p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  403 EPDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             chhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccc
Confidence            3556777777 56666543      3345678888888888888888888888888888888888654

>smart00248 ANK ankyrin repeats

Probab=97.29  E-value=0.00059  Score=33.45  Aligned_cols=26  Identities=50%  Similarity=0.750  Sum_probs=14.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCC
Q psy138           99 GYTPLHLAAIAGNVPLIHTLLAHRAN  124 (321)
Q Consensus        99 ~~t~l~~A~~~~~~~~v~~Ll~~~~~  124 (321)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.13  E-value=0.0098  Score=43.54  Aligned_cols=139  Identities=17%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHH
Q psy138           68 VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA  147 (321)
Q Consensus        68 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i  147 (321)
                      .+.-|++.+..++++..-+.....    ....++.+..||+..+.++|+|+-+.   +..  .+-.+.+..|+...+.++
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchhH
Confidence            456667777777776665543221    12345667777777777777777332   211  122345566666666655


Q ss_pred             HHH----HHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH
Q psy138          148 LET----VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS  223 (321)
Q Consensus       148 ~~~----L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  223 (321)
                      ...    ++++....     .+.                        +..-++.              .-|..|+..|.+
T Consensus       120 yslGY~l~~~~~~~~-----~~~------------------------d~~~ll~--------------~hl~~a~~kgll  156 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSE-----HNE------------------------DPTSLLT--------------QHLEKAAAKGLL  156 (192)
T ss_pred             HHHHHHHHHhhcccc-----ccc------------------------CHHHHHH--------------HHHHHHHHCCCH
Confidence            221    11110000     000                        0000110              135677777888


Q ss_pred             HHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       224 ~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      +.+.-.+++|.+++.      ++|..|+.+++-.++.+++.
T Consensus       157 ~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  157 PFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            877777777776653      57778888887777777653

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505|consensus

Probab=96.90  E-value=0.0021  Score=54.10  Aligned_cols=66  Identities=21%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHHhCCccc-----cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHh
Q psy138           76 TILSCAETILEVAPDLI-----EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATV  141 (321)
Q Consensus        76 ~~~~~v~~Ll~~~~~~~-----~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~  141 (321)
                      .-...+++|.+++....     ...+.-..|+||||+.+|+.++|.+||+.|.|+...|..|+||...+..
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            33566777777765431     2223345689999999999999999999999999999999999888773

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.82  E-value=0.013  Score=44.39  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC----CCCCcHHHHHHH
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD----EDGYTPLHLAAI  108 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~t~l~~A~~  108 (321)
                      -.|.-|+..-+++.+..++....        .-.+++-+|+..+.-+++-+|+.+-.-  ...|    ..+.--+.|+..
T Consensus       155 isledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS  224 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLS  224 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHh
Confidence            45778888888877777764433        245789999999999999999987421  1222    123335566655


Q ss_pred             h--CCHHHHHHHHHcC-CCCcc---CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q psy138          109 A--GNVPLIHTLLAHR-ANVNS---QDNEGHSVVHWATVCGEVEALETVLSAGAEP  158 (321)
Q Consensus       109 ~--~~~~~v~~Ll~~~-~~~~~---~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~  158 (321)
                      .  .+..++++++++| +++|.   ...+|.|.|.-|+..++.+++..|+++|+-.
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            4  3688999999998 45554   3457999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.73  E-value=0.0074  Score=38.04  Aligned_cols=47  Identities=15%  Similarity=0.104  Sum_probs=32.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH  121 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  121 (321)
                      ..+..|+.+|+.|+++.+++....        ...++..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            466777777777777777764422        03467777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.52  E-value=0.011  Score=44.77  Aligned_cols=93  Identities=22%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCcccccC----CCCcHHHHH--HHcCCHHHHHHHHhhcCCCcccC---CCCCCcH
Q psy138          210 GRQPILWAASAGSSDAILALVKAGANVEAHDK----DGLTALHCA--ASRGHRECLETLITLCGADVDVI---DTNGCSA  280 (321)
Q Consensus       210 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~----~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~---~~~g~t~  280 (321)
                      ..+++.+++.++..+++.+|+.+= .....|.    .+.--+.++  ....+..++++.++..=+++|.+   -++|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            457889999999999999998641 1111111    111122333  23456778888888534677754   4689999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Q psy138          281 LFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       281 l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                      |.-|+++++.+|+.+|+++||-.
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.72  E-value=0.065  Score=33.74  Aligned_cols=66  Identities=15%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC
Q psy138           32 ATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN  111 (321)
Q Consensus        32 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~  111 (321)
                      ...+..|+..|+.|+++.+++.+..        ...++..|+..-+.+++++|+++...         .-++..++...+
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~y~~---------~i~~~~~~~~~N   69 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIENYNL---------KISISDCLKYYN   69 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHhcCC---------CcCHHHHHHHCC
Confidence            4678999999999999999976533        14689999999999999999997422         113555666666


Q ss_pred             HHH
Q psy138          112 VPL  114 (321)
Q Consensus       112 ~~~  114 (321)
                      .+.
T Consensus        70 ~~a   72 (76)
T PF11929_consen   70 LRA   72 (76)
T ss_pred             hHh
Confidence            654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.39  E-value=0.2  Score=36.95  Aligned_cols=118  Identities=11%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC
Q psy138           32 ATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN  111 (321)
Q Consensus        32 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~  111 (321)
                      .-.|..|++.+-+.++++.=+.....    -...++.+..||+..+.|+|+|+-++-..      .+-.+.+..|....+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            35678888988888887775433221    12467888999999999999999554322      223445566666666


Q ss_pred             HHHHH----HHHHcCCCCccCCCC--CCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy138          112 VPLIH----TLLAHRANVNSQDNE--GHSVVHWATVCGEVEALETVLSAGAEPS  159 (321)
Q Consensus       112 ~~~v~----~Ll~~~~~~~~~~~~--~~t~l~~a~~~~~~~i~~~L~~~~~~~~  159 (321)
                      .++..    ++.++...-.-.+..  -..-|..|+..|-...+...+++|.+.+
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            55421    122221111000000  0123456666666666666666665554

These proteins may be involved in promoting survival of infected macrophages [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.48  E-value=6.7  Score=32.62  Aligned_cols=261  Identities=15%  Similarity=0.098  Sum_probs=147.1

Q ss_pred             ccccChhHHHHHHHcCCHHHHHHHHHcCCCc--ccccccCCccHHHHHHHcCcHHHHHHHHHhC--CccccccCCCCCcH
Q psy138           27 NTMEGATSLMYAAQQGKDAEVKAILASRPNA--VRERDRTRKTVLHYCAENTILSCAETILEVA--PDLIEAADEDGYTP  102 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~  102 (321)
                      .+..|.-.+..+.+.++.+....+++.-...  .-..|..|...+......+..+-...+++.-  ....-..+..|.-.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            3456888999999999988888887753221  2245678888888888888777666655542  11122445667767


Q ss_pred             HHHHHHhCCHHHHHHHHHc---CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCchhhhHhhhc
Q psy138          103 LHLAAIAGNVPLIHTLLAH---RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE---PSTPDIHGGYPIHYASQMC  176 (321)
Q Consensus       103 l~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~  176 (321)
                      +..+...+..+....+++.   ....-..+..|...+..+......+..+.+++.-..   .-..+..|...+.......
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~  176 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHC  176 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhC
Confidence            7777777665444444432   111123456777788888777766655555432110   0112334444444333321


Q ss_pred             ccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHc----CCCcccccCCCCcHHHHHHH
Q psy138          177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA----GANVEAHDKDGLTALHCAAS  252 (321)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~----~~~~~~~~~~g~t~l~~a~~  252 (321)
                      .        ......+++.+...- ..-..+..|+..+..++..+..+..+.+++.    -..+ ..++.|...+..+..
T Consensus       177 ~--------~~~~~~l~~~l~~~~-~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l-~~~k~Gs~Vve~~l~  246 (322)
T cd07920         177 S--------EEQREPLLEEILEHA-LELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQL-SCHKFASNVVEKCLK  246 (322)
T ss_pred             C--------HHHHHHHHHHHHHHH-HHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HcCcchHHHHHHHHH
Confidence            1        112223344333321 1123467788888888888776544444432    1111 356788778887777


Q ss_pred             cCCHH----HHHHHHhhc----CCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy138          253 RGHRE----CLETLITLC----GADVDVIDTNGCSALFYAVTLGHADATTLLL  297 (321)
Q Consensus       253 ~~~~~----~~~~Ll~~~----~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  297 (321)
                      .+..+    +++.++...    ...-=..|..|+..+..+.........+.++
T Consensus       247 ~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         247 HASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             HCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHH
Confidence            77644    444443310    0112245788988888888877755444433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-15
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-15
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-15
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-17
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-16
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-16
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-12
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-15
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-14
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-13
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-12
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-11
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-11
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-11
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-10
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-10
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-10
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-10
1uoh_A	226	Human Gankyrin Length = 226		7e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		6e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		4e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		8e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		9e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		6e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		8e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		8e-04

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
             L+ AA+ G+D EV+ ++A+  + V  +D+   T LH  A    L   E +L+   D +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 61
Query: 93  EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
            A D+DGYTPLHLAA  G++ ++  LL   A+VN++D +G++ +H A   G +E +E +L
Sbjct: 62  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 SAGAEPSTPDIHGGYPIHYA 172
            AGA+ +  D  G  P   A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+KAGA+V A DKDG T LH AA  GH E +E L+   GAD
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D +G + L  A   GH +   +LL+ GA  N QD+ G+T
Sbjct: 94  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
             L+ AA+ G+D EV+ ++A+  + V  +D+   T LH  A    L   E +L+   D +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 61
Query: 93  EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
            A D+DGYTPLHLAA  G++ ++  LL   A+VN++D +G++ +H A   G +E +E +L
Sbjct: 62  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 SAGAEPSTPDIHGGYPIHYA 172
            AGA+ +  D  G  P   A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 46/191 (24%)
Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
           AA AG    +  L+A+ A+VN++D +G++ +H A   G +E +E +L AGA+ +  D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDA 225
             P+H                                              AA  G  + 
Sbjct: 69  YTPLH---------------------------------------------LAAREGHLEI 83
Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
           +  L+KAGA+V A DKDG T LH AA  GH E +E L+   GADV+  D  G +    A+
Sbjct: 84  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAI 142
Query: 286 TLGHADATTLL 296
             GH D   +L
Sbjct: 143 REGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+KAGA+V A DKDG T LH AA  GH E +E L+   GAD
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 93
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D +G + L  A   GH +   +LL+ GA  N QD+ G+T
Sbjct: 94  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
             L+ AA+ G+D EV+ ++A+  + V  +D+   T LH  A    L   E +L+   D +
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 73
Query: 93  EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
            A D+DGYTPLHLAA  G++ ++  LL   A+VN++D +G++ +H A   G +E +E +L
Sbjct: 74  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 153 SAGAEPSTPDIHG 165
            AGA+ +  D  G
Sbjct: 134 KAGADVNAQDKFG 146

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+KAGA+V A DKDG T LH AA  GH E +E L+   GAD
Sbjct: 47  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D +G + L  A   GH +   +LL+ GA  N QD+ G+T
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D    T LH  A N  L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A+D  G TPLHLAA  G++ ++  LL H A+VN+ DN+GH+ +H A   G +E +E +L 
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 HGADVNAQDKFG 146

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AAS G  + +  L+K GA+V A D  G+T LH AA+ GH E +E L+   GAD
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D +G + L  A   GH +   +LL++GA  N QD+ G+T
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 127/289 (43%), Gaps = 23/289 (7%)
Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRK--TVLHYCAENTILSCAETIL 85
           T  G T L  AA++G    V+ +LA       +   T+K  T LH  A+   +  AE +L
Sbjct: 110 TTAGHTPLHIAAREG---HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 86  E--VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
           E    P+   AA ++G TPLH+A    N+ ++  LL    + +S    G++ +H A    
Sbjct: 167 ERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
           +VE   ++L  G   +   + G  P+H A+Q  GHA EM                     
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHA-EM----------VALLLSKQANG 271
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
                 G  P+   A  G       L+K G  V+A  + G T LH A+  G+ + ++ L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               ADV+     G S L  A   GH D  TLLL+ GA+PN     G T
Sbjct: 332 Q-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           TPLH+A+  G++P++  LL   A+ N  + +  + +H A   G  E  + +L   A+ + 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 161 PDIHGGYPIHYASQMCGHASE----MGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILW 216
                  P+H A+++ GH +     + N+    LA                  G  P+  
Sbjct: 76  KAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLA---------------TTAGHTPLHI 119
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
           AA  G  + +LAL++  A+     K G T LH AA  G     E L+    A  +    N
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKN 178
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           G + L  AV   + D   LLL  G +P+     G T
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR P+ +AA  G  + +  L+  GA+V A D DG T LH AA  GH+E ++ LI+  GAD
Sbjct: 37  GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D++G + L YA   GH +   LL+  GA  N  D  GRT
Sbjct: 96  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRT 138

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR P+ +AA  G  + +  L+  GA+  A D DG T LH AA  GH+E ++ L++  GAD
Sbjct: 37  GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +  D++G + L YA   GH +   LLL  GA PN  D  GRT
Sbjct: 96  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRT 138

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR P+  AA  G  + +  L++AGA+V A DK+G T LH AA  GH E ++ L+   GAD
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAD 60
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D NG + L  A   GH +   LLL+ GA  N +D+ GRT
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 18/292 (6%)
Query: 35  LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA 94
           L+ AA+ G + ++ A+L          D  + T LH  A    +   + +L+   D + A
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHA 86
Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
            D+ G  PLH A   G+  +   LL H A VN+ D    + +H A     VE    +LS 
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 155 GAEPSTPDIHGGYPIHYAS----------QMCGHASEMGNDVRVGLAXXXXXXXXXXXXX 204
           GA+P+  + HG   +  A           +  GH+  +    R                 
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS--LLQAAREADLAKVKKTLALEIIN 204
Query: 205 XXXXXGRQPILWAASAG----SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
                  +  L  A A            L++ GANV   +KD +T LH AA R H + +E
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            L    GA ++ +D+ G +AL  A   GH     LLL YG+ P+    +G T
Sbjct: 265 VLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D +  T LH  A N  L   E +L+   D + 
Sbjct: 17  KLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A D  G TPL LAA+ G++ ++  LL + A+VN+ D EGH+ +H A + G +E +E +L 
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 NGADVNAQDKFG 146

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A D  G T LH AA  GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +D  G + L  A   GH +   +LL+ GA  N  D +G T
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D    T LH    N  L   E +L+ A D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A+D+ G+TPLHLAA  G++ ++  LL + A+VN+ D +G++ +H A   G +E +E +L 
Sbjct: 75  ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 YGADVNAQDKFG 146

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+    + G  + I  L+K  A+V A DK G T LH AA RGH E +E L+   GAD
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+ +D  G + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR P+  AA  G  + +  L+  GA+V A D DG T LH AA  GH+E ++ LI+  GAD
Sbjct: 37  GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D++G + L +A   GH +   LL+  GA  N  D  GRT
Sbjct: 96  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+  A+D  G T LH AA+ GH E +E L+   GADV+
Sbjct: 4   KKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEY 315
            +DTNG + L  A +LGH +   +LL+YGA  N +D  G T  Y
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLY 106

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D T  T LH  A +  L   E +L+   D ++
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VD 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A+D  GYTPLHLAA  G++ ++  LL + A+VN+ D++G + +H A   G +E +E +L 
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 HGADVNAQDKFG 146

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA +G  + +  L+K GA+V+A D  G T LH AA  GH E +E L+   GAD
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+ +D++G + L  A   G+ +   +LL++GA  N QD+ G+T
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L A  AG  D +  L+  GA+V A D  G+T LH AA RGH E +E L+   GADV+
Sbjct: 16  KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D+ G + L  A T+GH +   +LL+YGA  N QD+ G+T
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A D+DGLT LH AA  GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK-YGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D  G + L  A   GH +   +LL++GA  N QD+ G+T
Sbjct: 75  AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA  G+D EV+ ++A+  + V   D    T LH  A N  L   E +L+   D + 
Sbjct: 9   KLLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VN 66
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A+D  G TPLHLAA  G++ ++  LL H A+VN+ D  G + +H A + G++E +E +L 
Sbjct: 67  ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 127 HGADVNAQDALG 138

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA+AG  D +  L+  GA+V A D +GLT LH AA+ G  E +E L+   GADV+
Sbjct: 8   KKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVN 66
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D+ G + L  A   GH +   +LL++GA  N  DR G T
Sbjct: 67  ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+K GA+V A D  G+T LH AA RGH E +E L+   GAD
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D NG + L  A  +GH +   +LL++GA  N QD+ G+T
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L A  AG  D +  L+  GA+V A D  G+T LH AA RGH E +E L+   GADV+
Sbjct: 16  KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D  G + L  A T+GH +   +LL+YGA  N QD+ G+T
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L A  AG  D +  L+  GA+V A D  G+T LH AA RGH E +E L+   GADV+
Sbjct: 16  KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D  G + L  A T+GH +   +LL+YGA  N QD+ G+T
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D + KT LH  A    L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           AAD+ G TPLHLAA+ G++ ++  LL + A+VN+ D  G + +H A   G +E +E +L 
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 YGADVNAQDKFG 146

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G+ P+  AA  G  + +  L+K GA+V A DK G T LH AA  GH E +E L+   GAD
Sbjct: 47  GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  DT G + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G+ P+  AA  G  + +  L+  GA+  A D DG T LH AA  GH+E ++ L++  GAD
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-QGAD 95
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +  D++G + L  A   GH +   LLL  GA PN  D  GRT
Sbjct: 96  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRT 138

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+K GA+V A D  G T LH AA RGH E +E L+   GAD
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  DT G + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D    T LH  A+   L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A D  G TPLHLAA  G++ ++  LL H A+VN++D EG + +H A   G +E +E +L 
Sbjct: 75  AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 YGADVNAQDKFG 146

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+K GA+V A D  G T LH AA  GH E +E L+   GAD
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D  G + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D T  T LH  A +  L   E +L+   D ++
Sbjct: 17  KLLEAARAGQDDEVRILIANGAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VD 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           AAD  G+TPLHLAA+ G++ ++  LL + A+VN+ D  G + +H A   G +E +E +L 
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 YGADVNAQDKFG 146

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA +G  + +  L+K GA+V+A D  G T LH AA  GH E +E L+   GAD
Sbjct: 47  GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK-YGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D  G + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A DK GLT LH AA   H E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ID  G + L      GH +   +LL++GA  N QD+ G+T
Sbjct: 75  AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D +  T LH  A    L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A D  G TPLHLAA+ G++ ++  LL H A+VN+ D  G + +H A + G +E +E +L 
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 HGADVNAQDKFG 146

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A D  GLT LH AA+ GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ID  G + L  A  +GH +   +LL++GA  N  D  G T
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V  RD T  T LH  A    L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A D  G TPLHLAA  G++ ++  LL + A+VN+ D+ G + +H A   G +E +E +L 
Sbjct: 75  AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 NGADVNAQDKFG 146

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+K GA+V A D  G+T LH AA RGH E +E L+   GAD
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D++G + L  A   GH +   +LL+ GA  N QD+ G+T
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A D+ GLT L+ A + GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +D  G + L  A  +GH +   +LL++GA  N QD+ G+T
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V AHD  G T LH AA  GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             DT+G + L  A   GH +   +LL+YGA  N QD  G T
Sbjct: 75  ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE 93
            L+ AA+ G+D EV+ ++A+  + V   D +  T LH  A    L   E +L+   D + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VN 74
Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           A D  G TPLHLAA+ G++ ++  LL H A+VN+ D  G + +H A + G +E +E +L 
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 154 AGAEPSTPDIHG 165
            GA+ +  D  G
Sbjct: 135 HGADVNAQDKFG 146

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A D  GLT LH AA+ GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ID  G + L  A  +GH +   +LL++GA  N  D  G T
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G  + +  L+K GA+V A+D  G T LH AA  GH E +E L+   GAD
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGAD 105
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D NG + L  A   GH +   +LL+YGA  N QD+ G+T
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 98/227 (43%), Gaps = 59/227 (25%)
Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ--------DNEGHSVVHWATVCGEVE 146
           ADEDG TPLH+A + GN+P +H L+    N+  Q        +N   + +H A +     
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXX 206
            +  +++AGA P   D HG    H A   C H S                          
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLA---CEHRSP------------------------- 92
Query: 207 XXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC 266
                + +L +A+ G+ D           +EA + DGLTALH A +    EC ET+  L 
Sbjct: 93  --TCLRALLDSAAPGTLD-----------LEARNYDGLTALHVAVN---TECQETVQLLL 136
Query: 267 --GADVDVID-TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
             GAD+D +D  +G S L +AV         LLLQ+GA  N Q   G
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A+D+ G T LH AA   H E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D +G + L  A   GH +   +LL++GA  N QD+ G+T
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR P+  AA  G  + +  L++AGA+V A DK+G T LH AA  GH E ++ L+   GAD
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAD 60
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           V+  D NG + L  A   GH +   LLL+ GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 20/215 (9%)
Query: 84  ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG 143
           +LE   D I  A+ DG T LH A I  NV ++  L+ + AN+N  DNEG   +H A  CG
Sbjct: 59  LLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXX 203
            ++  E ++S GA     +  G  P+  A +            R G+             
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Query: 204 XXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
                  R    W  S   +D              H K G TALH AA++G+ E L+ LI
Sbjct: 178 L------RDARQWLNSGHINDV------------RHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
                DV++ D +G + L  A   G  +A  +L++
Sbjct: 220 Q-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
            L A S+G ++ +L L++ GA++   + DGLTALH A    + + ++ L+   GA+++  
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP 102
Query: 274 DTNGCSALFYAVTLGHADATTLLLQYGA 301
           D  G   L  A + G+ D    L+  GA
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGA 130

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72  CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
           C EN      E +L   P L+   D+DG  PLH +       +   LL+   NVN     
Sbjct: 10  CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
           D+ G +  H A   G    LE V S    P  PD++    I      C H +        
Sbjct: 69  DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
                                G++   W   +        L++ GA+V   DK     LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
            AAS G  + +E L  L  + V+  D  G + LF+A+  GH DA  LL++ YGA  +  D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
            KG   E
Sbjct: 206 NKGAKAE 212

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72  CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
           C EN      E +L   P L+   D+DG  PLH +       +   LL+   NVN     
Sbjct: 10  CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
           D+ G +  H A   G    LE V S    P  PD++    I      C H +        
Sbjct: 69  DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
                                G++   W   +        L++ GA+V   DK     LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
            AAS G  + +E L  L  + V+  D  G + LF+A+  GH DA  LL++ YGA  +  D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
            KG   E
Sbjct: 206 NKGAKAE 212

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 48/247 (19%)
Query: 72  CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN---SQ 128
           C EN      E +L   P L+   D+DG  PLH +       +   LL+   NVN     
Sbjct: 10  CMENEFFKVQE-LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
           D+ G +  H A   G    LE V S    P  PD++    I      C H +        
Sbjct: 69  DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLN---KITNQGVTCLHLA-------- 114
Query: 189 GLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
                                G++   W   +        L++ GA+V   DK     LH
Sbjct: 115 --------------------VGKK---WFEVSQ------FLIENGASVRIKDKFNQIPLH 145
Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ-YGATPNRQD 307
            AAS G  + +E L  L  + V+  D  G + LF+A+  GH DA  LL++ YGA  +  D
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 308 RKGRTYE 314
            KG   E
Sbjct: 206 NKGAKAE 212

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 103/260 (39%), Gaps = 61/260 (23%)
Query: 68  VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
           +L    +N  +   + +LE   ++    +E G+TPLH A       ++  LL H A+   
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR 187
           +   G +    A + G V+ L+  LS GA+ +  D +G                      
Sbjct: 88  RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYG---------------------- 125
Query: 188 VGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANV----------E 237
                                      + AA  G   A+  L K GANV          E
Sbjct: 126 -----------------------FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 162
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA----- 292
              K G TAL  AA +GH E L+ L+   GADV+  D  G +AL +A+ L   D+     
Sbjct: 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 221
Query: 293 TTLLLQYGATPNRQDRKGRT 312
           T LLL +GA  N +  +G+T
Sbjct: 222 THLLLDHGADVNVRGERGKT 241

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 103/260 (39%), Gaps = 61/260 (23%)
Query: 68  VLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
           +L    +N  +   + +LE   ++    +E G+TPLH A       ++  LL H A+   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR 187
           +   G +    A + G V+ L+  LS GA+ +  D +G                      
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG---------------------- 105
Query: 188 VGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAGANV----------E 237
                                      + AA  G   A+  L K GANV          E
Sbjct: 106 -----------------------FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142
Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA----- 292
              K G TAL  AA +GH E L+ L+   GADV+  D  G +AL +A+ L   D+     
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 201
Query: 293 TTLLLQYGATPNRQDRKGRT 312
           T LLL +GA  N +  +G+T
Sbjct: 202 THLLLDHGADVNVRGERGKT 221

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 12/216 (5%)
Query: 97  EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
           ++  +PLH AA AG+V + H L+   AN+++   +  + +  A     +EA++ ++ AGA
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 157 EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILW 216
                D  G   +H A++  GH   +   +  G                    G  P++W
Sbjct: 69  LVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNG----------QMDVNCQDDGGWTPMIW 117
Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
           A      D +  L+  G+++   D +    LH AA  G  +  E L+     D+  ++ +
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIH 176
Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           G S L  A      D   L L   +    ++++G T
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L   GA+V A+D  G T LH AA  GH E +E L+   GADV+
Sbjct: 16  KKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVN 74
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
                G + L  A    H +   +LL++GA  N QD+ G+T
Sbjct: 75  ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 46/227 (20%)
Query: 97  EDGYTPLHLAAI----AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
           EDG + LHLA I    A  + +I  +    A +N Q+N   + +H A +  + E  E +L
Sbjct: 3   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
            AG +P   D  G  P+H A        E G    VG+                      
Sbjct: 63  GAGCDPELRDFRGNTPLHLAC-------EQGCLASVGV---------------------- 93
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
            +  + +     +IL         +A + +G T LH A+  G+   +E L++L GADV+ 
Sbjct: 94  -LTQSCTTPHLHSIL---------KATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNA 142
Query: 273 IDT-NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT-YEYQW 317
            +  NG +AL  AV L + D  +LLL+ GA  NR   +G + Y+  W
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 189

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 46/227 (20%)
Query: 97  EDGYTPLHLAAI----AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
           EDG + LHLA I    A  + +I  +    A +N Q+N   + +H A +  + E  E +L
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQ 212
            AG +P   D  G  P+H A        E G    VG+                      
Sbjct: 66  GAGCDPELRDFRGNTPLHLAC-------EQGCLASVGVL--------------------- 97
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
                  + ++  + +++KA       + +G T LH A+  G+   +E L++L GADV+ 
Sbjct: 98  -----TQSCTTPHLHSILKAT------NYNGHTCLHLASIHGYLGIVELLVSL-GADVNA 145
Query: 273 IDT-NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT-YEYQW 317
            +  NG +AL  AV L + D  +LLL+ GA  NR   +G + Y+  W
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
           GRQ  P+ +AA       +  L++ GA+V A DK GL  LH A S GH E  E L+   G
Sbjct: 40  GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 98
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           A V+V D    + L  A   G  +   LLLQ+GA P +++R G T
Sbjct: 99  AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
           GRQ  P+ +AA       +  L++ GA+V A DK GL  LH A S GH E  E L+   G
Sbjct: 42  GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 100
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           A V+V D    + L  A   G  +   LLLQ+GA P +++R G T
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L   +LA ++     D +  + +HWA   G  E +E +L  G   +  D  G  P+H   
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
                                                      AASAG  + + AL+  G
Sbjct: 80  -------------------------------------------AASAGRDEIVKALLVKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
           A+V A +++G T LH AAS+   E +  ++   GA+ D  D    +A+  A   G+    
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
            +LL Y A+ N QD +G T
Sbjct: 156 HILLFYKASTNIQDTEGNT 174

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L  ++LA ++     D +  + +HWA   G  E +E +L  G   +  D  G  P+H   
Sbjct: 22  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
                                                      AASAG  + + AL+  G
Sbjct: 80  -------------------------------------------AASAGRDEIVKALLGKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
           A V A +++G T LH AAS+   E +  ++   GA+ D  D    +A+  A   G+    
Sbjct: 97  AQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
            +LL Y A+ N QD +G T
Sbjct: 156 HILLYYKASTNIQDTEGNT 174

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L  ++LA ++     D +  + +HWA   G  E +E +L  G   +  D  G  P+H   
Sbjct: 23  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 80
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
                                                      AASAG  + + AL+  G
Sbjct: 81  -------------------------------------------AASAGRDEIVKALLGKG 97
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
           A V A +++G T LH AAS+   E +  ++   GA+ D  D    +A+  A   G+    
Sbjct: 98  AQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 294 TLLLQYGATPNRQDRKGRT 312
            +LL Y A+ N QD +G T
Sbjct: 157 HILLYYKASTNIQDTEGNT 175

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 210 GRQ--PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
           GRQ  P+ +AA       +  L++ GA+V A DK GL  LH A S GH E  E L+   G
Sbjct: 44  GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HG 102
Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           A V+V D    + L  A   G  +   LLLQ+GA P +++R G T
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L   +LA ++     D +  + +HWA   G  E +E +L  G   +  D  G  P+H   
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-- 79
Query: 174 QMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXGRQPILWAASAGSSDAILALVKAG 233
                                                      AASAG  + + AL+  G
Sbjct: 80  -------------------------------------------AASAGXDEIVKALLVKG 96
Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADAT 293
           A+V A +++G T LH AAS+   E +  ++   GA+ D  D    +A+  A   G+    
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 294 TLLLQYGATPNRQDRKGRT 312
            +LL Y A+ N QD +G T
Sbjct: 156 HILLFYKASTNIQDTEGNT 174

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G +D I  L+K GAN  A + D    LH A  +GH + ++ L+    A 
Sbjct: 86  GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAK 144
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +  D +G + L YA + GH +   LLLQ+GA+ N  + KG T
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           P+ WA   G    ++ L+K GA+    D +G + +H AA  GH   +  LI   G DVD+
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDM 137
Query: 273 IDTNGCSALFYAVTLGHA-DATTLLLQYGATPNRQDRKGRTYEYQW 317
           +D NG + L +A    H+ D T LLL +  + N  D+  +     W
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P++WAA+ G    +  L++ GA+ +   K   +AL  A S+G+ + ++ L+  CG D
Sbjct: 52  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 110
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           V+  D NG + L YAV   H     +LL+ GA P  +   G
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P++WAA+ G    +  L++ GA+ +   K   +AL  A S+G+ + ++ L+  CG D
Sbjct: 34  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           V+  D NG + L YAV   H     +LL+ GA P  +   G
Sbjct: 93  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P++WAA+ G    +  L++ GA+ +   K   +AL  A S+G+ + ++ L+  CG D
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           V+  D NG + L YAV   H     +LL+ GA P  +   G
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 34  SLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDL 91
            L+ AA+ G+D EV+ ++A+   A    D    + LH  A+    S  E +L   V+ D 
Sbjct: 5   KLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
               D    TPLH+AA  G+  ++  LL H A+VN++D    + +HWAT     E +E +
Sbjct: 63  RTKVDR---TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
           +  GA+           +H  S+ C  A ++  D
Sbjct: 120 IKYGAD-----------VHTQSKFCKTAFDISID 142

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXG 210
           +L A   P T D  G  P+H A+Q  GH S     +R G++                   
Sbjct: 20  ILMANGAPFTTDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDARTKV-----------D 67
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
           R P+  AAS G ++ +  L+K GA+V A D   +TALH A    H+E +E LI   GADV
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADV 126
Query: 271 DVIDTNGCSALFYAVTLGHADATTLL 296
                   +A   ++  G+ D   +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G       L++AG + +A  K   T LH AAS GH   +E L+   GAD
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGAD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V+  D    +AL +A    H +   LL++YGA  + Q +  +T
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 41/207 (19%)
Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           ++  AD +G T LH +    N P++  LL +    V+ Q+  G+S +        + AL 
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM-------LTALA 155
Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXX 209
           T+       +  DI     +     +   AS+                            
Sbjct: 156 TL------KTQDDIETVLQLFRLGNINAKASQ---------------------------A 182
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G+  ++ A S G  D + AL+   A+V   D DG TAL CA   GH+E    L+ +   D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLL 296
           + + D +G +AL  A+  G ++  ++L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A DKDG T LH AA  GH E +E L+   GADV+
Sbjct: 4   KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
             D  G +A   ++  G+ D   +L
Sbjct: 63  AQDKFGKTAFDISIDNGNEDLAEIL 87

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 98  DGY--TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           D Y  TPL +A + G    I  L+ +   +  +D EG + + WA     +   E +LS G
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 156 AEPSTPDIHGGYPIHYA-----SQMCGHASEMGNDVRVGLAXXXXXXXXXXXXXXXXXXG 210
           +  +T D  G  P+ ++     S+M     E G +V                       G
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-----------------DRNLEG 134
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
             P++ A+  G S+ +  L++ GA++ A D  GLTA   A   G +E ++  
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
           R P++ A   G  +AI  LV+    +E  D +G TAL  A         E L++  G++V
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNV 94
Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +  D +G + L +++  G+++ +  LL++GA  N ++ +G T
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A DK+G T LH AA  GH E ++ L+   GADV 
Sbjct: 26  KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVX 84
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
             D  G +A   ++  G+ D   +L
Sbjct: 85  AQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
           KDG T LH AA  GH E ++ L++  GADV+    +G + L  A   GHA+   LLL  G
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 301 ATPNRQDRKGRTYEY 315
           A  N + + G T E+
Sbjct: 66  ADVNARSKDGNTPEH 80

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           + +L AA AG  D +  L+  GA+V A DK+G T LH AA  GH E ++ L+   GADV+
Sbjct: 8   KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVN 66
Query: 272 VIDTNGCSALFYAVTLGHADATTLL 296
             D  G +A   ++  G+ D   +L
Sbjct: 67  AQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+ WA   G S  +  L+  GA +   ++   T LH AAS GHR+ ++ L+    AD
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD 97
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           ++ ++ +G   L YA   G       L+  GA
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+ WA   G S  +  L+  GA +   ++   T LH AAS GHR+ ++ L+    AD
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD 92
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           ++ ++ +G   L YA   G       L+  GA
Sbjct: 93  INAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +DRT   V+H  A    L   +T+LE   D +   D +G  PLHLAA  G++ ++  L+ 
Sbjct: 66  KDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           H A NV  ++++G +    A + G  E +  + + GA  +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
           +T+LH  +    +   E +L+   D     D  G+TPLH A   G++ ++  LL H+A V
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
           N+   +  S +H A   G V+ ++ +LS GA  +  +I G  P+ Y
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +DRT   V+H  A    L   +T+LE   D +   D +G  PLHLAA  G++ ++  L+ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           H A NV  ++++G +    A + G  E +  + + GA  +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 99  GYTPLHLAAIAG---------------NVPLIHTLLAHRANVN-SQDNEGHSVVHWATVC 142
           G TPL +AA+ G                  +I  LLA  A +N + D  G + +H A   
Sbjct: 2   GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAXXXXXXXXXXX 202
              +A + +L AGA+ ++ D  G  P+H A      A  MG                   
Sbjct: 62  ARADAAKRLLDAGADANSQDNTGRTPLHAAVA----ADAMG-------VFQILLRNRATN 110
Query: 203 XXXXXXXGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
                  G  P++ AA       +  L+ A A++ A D  G TALH AA+  + E +  L
Sbjct: 111 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 170
Query: 263 ITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
           + +  A+ D  D    + LF A   G  +A+  LL   A     D   R
Sbjct: 171 L-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR 218

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +DRT   V+H  A    L   +T+LE   D +   D +G  PLHLAA  G++ ++  L+ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
           H A NV  ++++G +    A + G  E +  + + GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +DRT   V+H  A    L   +T+LE   D +   D +G  PLHLAA  G++ ++  L+ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           H A NV  ++++G +    A + G  E +  + + GA  +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +DRT   V+H  A    L   +T+LE   D +   D +G  PLHLAA  G++ ++  L+ 
Sbjct: 66  KDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 121 HRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           H A NV  ++++G +    A + G  E +  + + GA  +T
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 213 PILWAASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           P L+A + G ++ +  ++K A  ++  H++ G  AL  AA +GH + ++ L+     D+D
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 272 VIDTNGCSALFYAVTLG-----HADATTLLLQYGATPNRQDRKGRT 312
             +  G +AL  AV L      + D   LL++ GA  + +D  GRT
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           +  +WA   G  D +   V  G +V    + G   LH AA  G  E LE L+ L GAD++
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADIN 67
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D +  + L  AV  GH     LLL  GA    +   G T
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
           +  +WA   G  D +   V  G +V    + G   LH AA  G  E LE L+ L GAD++
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADIN 62
Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D +  + L  AV  GH     LLL  GA    +   G T
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 103

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P++WA++ G  + +  L++ GA+     K+  +AL  A++ G+ + +  L+     D
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +++ D NG + L YAV   H      LL  GA    +   G T
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT 137

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P++WA++ G  + +  L++ GA+     K+  +AL  A++ G+ + +  L+     D
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVD 94
Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +++ D NG + L YAV   H      LL  GA    +   G T
Sbjct: 95  INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYT 137

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13  NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
           + +++  S   +   T  G T+L  AA+  +    K +L +  +A  + D   +T LH  
Sbjct: 6   DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAA 62
Query: 73  AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    + +L      ++A   DG TPL LAA      ++  L+   A+VN+ D+ G
Sbjct: 63  VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLG 122
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            S +HWA     V+A   +L  GA     +     P+  A++
Sbjct: 123 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13  NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
           + +++  S   +   T  GAT+L  AA   +    K +L +  +A   +D   +T LH  
Sbjct: 41  DFIYQGASLHNQTDRT--GATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 73  AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    + ++      ++A   DG TPL LAA      ++  L+   A+VN+ D+ G
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            S +HWA     V+A   +L  GA     +     P+  A++
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
           V PD   A +  G T L +  + G+  +   LL   A+ N QD  G S VH A   G ++
Sbjct: 33  VHPD---ALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 88
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            L+ ++  GA+ + PD  G  PIH A Q
Sbjct: 89  TLKVLVEHGADVNVPDGTGALPIHLAVQ 116

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           GS+   L L+K GA+    D  G + +H AA  G  + L+ L+   GADV+V D  G   
Sbjct: 52  GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 110
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +  AV  GH  A    L   +  +R+D +G T
Sbjct: 111 IHLAVQEGHT-AVVSFLAAESDLHRRDARGLT 141

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
           V PD   A +  G T L +  + G+  +   LL   A+ N QD  G S VH A   G ++
Sbjct: 27  VHPD---ALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82
Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            L+ ++  GA+ + PD  G  PIH A Q
Sbjct: 83  TLKVLVEHGADVNVPDGTGALPIHLAVQ 110

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           GS+   L L+K GA+    D  G + +H AA  G  + L+ L+   GADV+V D  G   
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 104
Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +  AV  GH  A    L   +  +R+D +G T
Sbjct: 105 IHLAVQEGHT-AVVSFLAAESDLHRRDARGLT 135

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13  NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
           + +++  S   +   T  G T+L  AA+  +    K +L +  +A   +D   +T LH  
Sbjct: 41  DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 73  AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    + ++      ++A   DG TPL LAA      ++  L+   A+VN+ D+ G
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            S +HWA     V+A   +L  GA     +     P+  A++
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13  NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
           + +++  S   +   T  G T+L  AA+  +    K +L +  +A   +D   +T LH  
Sbjct: 42  DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 98
Query: 73  AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    + ++      ++A   DG TPL LAA      ++  L+   A+VN+ D+ G
Sbjct: 99  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 158
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            S +HWA     V+A   +L  GA     +     P+  A++
Sbjct: 159 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
           + L+ AA++     +  +L      V +R    +T LH  A    L  A  ++E AP+L+
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 93  ----EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN------EGHSVVHW---- 138
                +   +G T LH+A I  NV L+  LLA  A+V+++          H+++++    
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 139 ---ATVCGEVEALETVLSAGAEPSTPDIHGGYPIH 170
              A   G  E +  ++  GA+    D  G   +H
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 13  NLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYC 72
           + +++  S   +   T  G T+L  AA+  +    K +L +  +A   +D   +T LH  
Sbjct: 9   DFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 65
Query: 73  AENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    + ++      ++A   DG TPL LAA      ++  L+   A+VN+ D+ G
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125
Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            S +HWA     V+A   +L  GA     +     P+  A++
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 50  ILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD------------LIEAADE 97
           +L  RP+  R+   T  T    C  +T  + A    +  P+             +EA + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGA 156
           DG+TPLH+A I  +  ++  L    A++N  +   G + +H A        LE +L AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 157 EPSTPDIHGG 166
           +P T  ++GG
Sbjct: 217 DP-TARMYGG 225

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 50  ILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD------------LIEAADE 97
           +L  RP+  R+   T  T    C  +T  + A    +  P+             +EA + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGA 156
           DG+TPLH+A I  +  ++  L    A++N  +   G + +H A        LE +L AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 157 EPSTPDIHGG 166
           +P T  ++GG
Sbjct: 217 DP-TARMYGG 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-61
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-60
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-56
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-53
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-53
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-52
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-53
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-52
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-52
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-51
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-45
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-52
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-52
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-52
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-52
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-45
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-51
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-50
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-48
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-49
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-49
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-46
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-43
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-38
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-40
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-28
2rfa_A	232	Transient receptor potential cation channel subfa	3e-38
2rfa_A	232	Transient receptor potential cation channel subfa	2e-37
2rfa_A	232	Transient receptor potential cation channel subfa	2e-25
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	9e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-37
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-37
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	6e-29
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	9e-13
2etb_A	256	Transient receptor potential cation channel subfam	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-15
2pnn_A	273	Transient receptor potential cation channel subfa	8e-28
2pnn_A	273	Transient receptor potential cation channel subfa	7e-12
2pnn_A	273	Transient receptor potential cation channel subfa	7e-10
2pnn_A	273	Transient receptor potential cation channel subfa	5e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  206 bits (527), Expect = 1e-63
 Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 15/283 (5%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +  T L  AA+ G    VK +L +  N          T LH  A    +     +LE   
Sbjct: 79  DDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEA 137

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
                  + G+TPLH+AA  G V +   LL   A+ N+    G + +H A     ++ ++
Sbjct: 138 S-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L  G  P +P  +G  P+H A++               + V + LL +    N     
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQ-NQ-----------VEVARSLLQYGGSANAESVQ 244

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA  G ++ +  L+   AN    +K GLT LH  A  GH    + LI   G  
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVM 303

Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           VD     G + L  A   G+      LLQ+ A  N + + G +
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 346

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  204 bits (521), Expect = 1e-62
 Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 15/283 (5%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L  A+  G    VK +L    +     +   +T LH  A       A+ +L+   
Sbjct: 13  SGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             + A  +D  TPLH AA  G+  ++  LL + AN N     GH+ +H A   G VE + 
Sbjct: 72  K-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L   A  +     G  P+H A++  G            + V ++LL  +   N   K+
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKY-GK-----------VRVAELLLERDAHPNAAGKN 178

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  A    + D +  L+  G +  +   +G T LH AA +   E   +L+   G  
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGS 237

Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +     G + L  A   GHA+   LLL   A  N  ++ G T
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  204 bits (521), Expect = 1e-62
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 15/285 (5%)

Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
            ++  T L  AA+ G     K +L ++   V  + +  +T LH  A     +  + +LE 
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
             +    A   G+TPLH+AA  G+V  +  LL   A+      +G + +H A   G+V  
Sbjct: 103 NAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161

Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
            E +L   A P+    +G  P+H A     +           L ++K+LL      +   
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVH-HNN-----------LDIVKLLLPRGGSPHSPA 209

Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
            +G  P+  AA     +   +L++ G +  A    G+T LH AA  GH E +  L++   
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQ 268

Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           A+ ++ + +G + L      GH     +L+++G   +   R G T
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  200 bits (512), Expect = 2e-61
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 18/287 (6%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +G T L  AA+ GK    + +L    +      +   T LH    +  L   + +L    
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
               +   +GYTPLH+AA    V +  +LL +  + N++  +G + +H A   G  E + 
Sbjct: 204 S-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +LS  A  +  +  G  P+H  +Q  GH           + V  VL+ H V V+   + 
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQ-EGH-----------VPVADVLIKHGVMVDATTRM 310

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  A+  G+   +  L++  A+V A  K G + LH AA +GH + +  L+   GA 
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 369

Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQY---GATPNRQDRKGRTY 313
            + + ++G + L  A  LG+   T +L       +     D+   ++
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  196 bits (501), Expect = 9e-60
 Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
                 +  T LH  +    L   + +L+        ++    TPLH+AA AG+  +   
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
           LL ++A VN++  +  + +H A   G    ++ +L   A P+     G  P+H A++  G
Sbjct: 66  LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EG 124

Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE 237
           H           +  +  LL        + K G  P+  AA  G       L++  A+  
Sbjct: 125 H-----------VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLL 297
           A  K+GLT LH A    + + ++ L+   G        NG + L  A      +    LL
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232

Query: 298 QYGATPNRQDRKGRT 312
           QYG + N +  +G T
Sbjct: 233 QYGGSANAESVQGVT 247

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (392), Expect = 7e-44
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 13/192 (6%)

Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
              +       G + +H A+  G +  ++ +L  GA P+  ++    P+H A++  GH  
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGH-- 59

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD 240
                      V K LL +   VN   KD + P+  AA  G ++ +  L++  AN     
Sbjct: 60  ---------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
             G T LH AA  GH E +  L+    A    +   G + L  A   G      LLL+  
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 301 ATPNRQDRKGRT 312
           A PN   + G T
Sbjct: 170 AHPNAAGKNGLT 181

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 1e-38
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 17/224 (7%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L  AA+Q +    +++L    +          T LH  A+         +L    
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           +     ++ G TPLHL A  G+VP+   L+ H   V++    G++ +H A+  G ++ ++
Sbjct: 270 N-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L   A+ +     G  P+H A+Q  GH             ++ +LL +    N V  D
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQ-QGH-----------TDIVTLLLKNGASPNEVSSD 376

Query: 210 GRQPILWAASAGSSDAI---LALVKAGANVEAHDKDGLTALHCA 250
           G  P+  A   G          +    + V   DK  ++     
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (345), Expect = 4e-37
 Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 13/160 (8%)

Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
           S G         G  P+H AS M GH           L ++K LL      NV +     
Sbjct: 2   SPGISGGGGGESGLTPLHVASFM-GH-----------LPIVKNLLQRGASPNVSNVKVET 49

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           P+  AA AG ++    L++  A V A  KD  T LHCAA  GH   ++ L+    A+ ++
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNL 108

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             T G + L  A   GH +    LL+  A+     +KG T
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 148

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 22/134 (16%), Positives = 34/134 (25%), Gaps = 47/134 (35%)

Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
           T  G + L  AAQQG    V  +L +  +                               
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGAS------------------------------- 369

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTL---LAHRANVNSQDNEGHSVVHWATVCGE 144
                     DG TPL +A   G + +   L       + V   D    S          
Sbjct: 370 ----PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE------- 418

Query: 145 VEALETVLSAGAEP 158
              ++ +L    + 
Sbjct: 419 --TVDEILDVSEDE 430

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  184 bits (469), Expect = 1e-56
 Identities = 75/293 (25%), Positives = 120/293 (40%), Gaps = 28/293 (9%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           E    L+ A Q      V+ +L    N   + +    T LH   + +     E +L    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D      ++G TP  LAAIAG+V L+   L+  A+VN  D  G +    A V G+V+AL+
Sbjct: 64  D-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 150 TVLSAGAEPSTPDIHGGY----------PIHYASQMCGHASEMGNDVRVGLAVLKVLL-H 198
            +   GA  +                   +  A++  GH           + VLK+LL  
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGH-----------VEVLKILLDE 170

Query: 199 HNVDVNVVDKDGRQPILWAASAGSSDAILALVK----AGANVEAHDKDGLTALHCAASRG 254
              DVN  D  GR  ++ A  +     + A+       GA+V    + G T L  A  + 
Sbjct: 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230

Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
           H   ++ L+     +++  D++G +AL  AV L       LL + GA+ +  D
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  168 bits (428), Expect = 1e-50
 Identities = 72/233 (30%), Positives = 100/233 (42%), Gaps = 27/233 (11%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLS 153
           A  +    L  A    +V L+  LL   ANVN Q+ E G + +H A      + +E +L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
            GA+P     +G  P   A+   G            + +LK+ L    DVN  D  G   
Sbjct: 61  HGADPVLRKKNGATPFLLAAI-AGS-----------VKLLKLFLSKGADVNECDFYGFTA 108

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKD----------GLTALHCAASRGHRECLETLI 263
            + AA  G   A+  L K GANV    K           G TAL  AA +GH E L+ L+
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATT----LLLQYGATPNRQDRKGRT 312
              GADV+  D  G +AL +A+             LLL +GA  N +  +G+T
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  165 bits (421), Expect = 1e-49
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 27/262 (10%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
             +L    +N  +   + +LE   ++    +E G+TPLH A       ++  LL H A+ 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
             +   G +    A + G V+ L+  LS GA+ +  D +G      A+   G        
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGK------- 117

Query: 186 VRVGLAVLKVLLHHNVDVNVVDKD----------GRQPILWAASAGSSDAILALV-KAGA 234
               +  LK L     +VN+  K           G   ++ AA  G  + +  L+ + GA
Sbjct: 118 ----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 235 NVEAHDKDGLTALHCAASRGHRECLETLITL---CGADVDVIDTNGCSALFYAVTLGHAD 291
           +V A D  G  AL  A        +E +  L    GADV+V    G + L  AV   H  
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 292 ATTLLL-QYGATPNRQDRKGRT 312
               LL Q     N  D  G+T
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKT 255

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (294), Expect = 5e-31
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ-PILWAASA 220
            +   + +  A Q               + +++ LL    +VN  +++G   P+  A   
Sbjct: 2   AVEDNHLLIKAVQ-NED-----------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
              D +  L++ GA+     K+G T    AA  G  + L+  ++  GADV+  D  G +A
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTA 108

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRTYE 314
              A   G   A   L + GA  N + +     E
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.1 bits (204), Expect = 4e-18
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
            GAT+LM AA++G    +K IL     A V   D   +  L +   +   S    +  + 
Sbjct: 147 GGATALMDAAEKGHVEVLK-ILLDEMGADVNACDNMGRNALIHALLS---SDDSDVEAIT 202

Query: 89  PDLIE------AADEDGYTPLHLAAIAGNVPLIHTLLAHR-ANVNSQDNEGHSVVHWATV 141
             L++         E G TPL LA    ++ L+  LL      +N  D++G + +  A  
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 142 CGEVEALETVLSAGAEPSTPDI 163
               +  E +   GA     D+
Sbjct: 263 LKLKKIAELLCKRGASTDCGDL 284

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  174 bits (445), Expect = 1e-53
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
           +   D+     +  A   G       L+    +V   D E  +++HWA +   ++ ++  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 152 LSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
           +S GA            P+H+A++  GH           L+++  L+ +  D +++D +G
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATR-QGH-----------LSMVVQLMKYGADPSLIDGEG 109

Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR-ECLETLITLCGAD 269
              I  AA  G +  +  L+  G +V+  D++G+T L  AA R H  +    L+T     
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVS 168

Query: 270 VDVID-TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           V++ D  +  +AL +AV  G+    +LLL+ GA  + Q+ KG +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  174 bits (443), Expect = 2e-53
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 17/247 (6%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
           +   D      +    +  I      ++E   D +   D++  T LH AAI   + L+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 118 LLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC 176
            ++  A V+    +   + +HWAT  G +  +  ++  GA+PS  D  G   IH A+Q  
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ-F 119

Query: 177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG-SSDAILALVKAGAN 235
           GH            +++  L+    DV+++D++G  P++WAA    S D    L+    +
Sbjct: 120 GH-----------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 236 VEAHDK-DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATT 294
           V   DK    TALH A   G+   +  L+   GA+VD  +  G SAL  A    +     
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMIN 227

Query: 295 LLLQYGA 301
            L +   
Sbjct: 228 HLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (393), Expect = 6e-46
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 13/235 (5%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
                ++ A Q G     + ++ +  + VR+ D+   T+LH+ A N  +   +  +    
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
            + +   +   TPLH A   G++ ++  L+ + A+ +  D EG S +H A   G    + 
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK- 208
            +++ G +    D +G  P+ +A+    H+ +            ++LL  NV VN+ DK 
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYR-THSVD----------PTRLLLTFNVSVNLGDKY 175

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
                + WA  AG++  I  L++AGANV+A +  G +AL  A  R +   +  L 
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  136 bits (345), Expect = 8e-39
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 16/192 (8%)

Query: 124 NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG 183
           ++   D+     +  AT  G  E    ++ AG +   PD      +H+A+          
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NR----- 54

Query: 184 NDVRVGLAVLKVLLHHNVDVNVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
                 + ++K  +     V+ +  D    P+ WA   G    ++ L+K GA+    D +
Sbjct: 55  ------IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH-ADATTLLLQYGA 301
           G + +H AA  GH   +  LI   G DVD++D NG + L +A    H  D T LLL +  
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167

Query: 302 TPNRQDRK-GRT 312
           + N  D+    T
Sbjct: 168 SVNLGDKYHKNT 179

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (288), Expect = 1e-30
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTR-KTVLHYCAENTILSCAETILEVA 88
           E  T L +AA   +   VK  ++     V +       T LH+      LS    +++  
Sbjct: 41  ENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG-EVEA 147
            D     D +G + +HLAA  G+  ++  L+A   +V+  D  G + + WA      V+ 
Sbjct: 100 AD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158

Query: 148 LETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
              +L+     +  D +     +H+A    G+             V+ +LL    +V+  
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVL-AGN-----------TTVISLLLEAGANVDAQ 206

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEA 238
           +  G   +  A    +   I  L +A      
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 31  GATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
           G T LM+AA +    +   +L +     N   +  +   T LH+       +    +LE 
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK--NTALHWAVLAGNTTVISLLLEA 199

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN 130
             + ++A +  G + L LA    NV +I+ L   R      DN
Sbjct: 200 GAN-VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  178 bits (453), Expect = 2e-53
 Identities = 55/324 (16%), Positives = 109/324 (33%), Gaps = 49/324 (15%)

Query: 17  ENGSFDKKVHNT-MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN 75
            +G   ++ +                G D  +     +      E +      LH  A  
Sbjct: 46  YDGYIKRQRNELQHYSLYPNPQGYGNGND-FLGDFNHTNLQIPTEPEPESPIKLHTEAAG 104

Query: 76  TILSCAETILEVAPDLIE-----AADEDGYTPLHLAAIAGNVPLIHTLLAHR-------- 122
           +          +   +              T LH  A   +      L+ H         
Sbjct: 105 S--------YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
           A+VN+ D + ++ +  A +      +  ++ AGA+P+  +      +H A+         
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA-NRD---- 211

Query: 183 GNDVRVGLAVLKVLLHHN---VDVNVVDKDGRQPILWAASAGSSDAILA---LVKAGANV 236
                    ++  +L+      D+  +D++G   ++  A     D + +   LV+ GA V
Sbjct: 212 -------FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 237 --------EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
                   ++    G TALH AA   +   ++ L+   G++ D  D +G + +  A   G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324

Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
             +    L+Q GA+    D    T
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHT 348

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  160 bits (408), Expect = 8e-47
 Identities = 64/291 (21%), Positives = 108/291 (37%), Gaps = 32/291 (10%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAET-ILEVA 88
           E    L   A        + I     N +  R    +TVLH+ A N+    +E  I+  A
Sbjct: 93  ESPIKLHTEAAGSYAI-TEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDLIVHEA 149

Query: 89  PDL------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC 142
            +       + A D D  TPL LA +A    L+  L+   A+    +    S +H A   
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 209

Query: 143 GEVEALETVLS---AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
            +   +  +L+      +    D +G   +   +          N+ R  +A  K+L+  
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH---------NEGRDQVASAKLLVEK 260

Query: 200 NVDVNV--------VDKDGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCA 250
              V+             GR  + +AA   +   +  LV + G+N +  D+DG T +  A
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           A  G  E +  LI   GA V+ +D    +A   A    H +   +  +   
Sbjct: 321 AQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  148 bits (377), Expect = 3e-42
 Identities = 44/264 (16%), Positives = 92/264 (34%), Gaps = 36/264 (13%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNA-------VRERDRTRKTVLHYCAENTILSCAE 82
              T L + A      + + ++             V   D    T L             
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183

Query: 83  TILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR---ANVNSQDNEGHSVVHWA 139
            +++   D     ++   + LH AA   +  ++  +L       ++   D  G + +   
Sbjct: 184 YLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242

Query: 140 TVCGEVEALETV---LSAGAE--------PSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
                 + + +    +  GA+          +    G   +HYA+Q   +          
Sbjct: 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSN---------- 291

Query: 189 GLAVLKVLLHHN-VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL 247
            + ++K L+     + +  D+DG+ PI+ AA  G  + ++ L++ GA+VEA D    TA 
Sbjct: 292 -MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR 350

Query: 248 HCAASRGHRECLETLITLCGADVD 271
             A +  H   ++     C  + +
Sbjct: 351 QLAQANNHHNIVDIFDR-CRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.7 bits (218), Expect = 8e-20
 Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 13/160 (8%)

Query: 163 IHGGY--PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
           I+     P     +      +     +  L       +     N +      P       
Sbjct: 12  INASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGN 71

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           G+                 + +    LH  A+ G     E +      ++     +  + 
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITR-ESVNII-DPRHNRTV 128

Query: 281 LFYAVTLGHADATTLLLQY--------GATPNRQDRKGRT 312
           L +  +   A+ +  L+ +        GA  N  D    T
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  173 bits (442), Expect = 2e-53
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
            +   ++  +PLH AA AG+V + H L+   AN+++   +  + +  A     +EA++ +
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHN-VDVNVVDKDG 210
           + AGA     D  G   +H A++  GH             V++ LL +  +DVN  D  G
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAK-KGH-----------YEVVQYLLSNGQMDVNCQDDGG 111

Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV 270
             P++WA      D +  L+  G+++   D +    LH AA  G  +  E L+     D+
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDL 170

Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             ++ +G S L  A      D   L L   +    ++++G T
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  170 bits (434), Expect = 5e-52
 Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 15/245 (6%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
            +   + +++ LH  AE   +     +++   + I+   ED  TPL  AA   ++  +  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMC 176
           L+   A V+ +D EG + +H A   G  E ++ +LS G  + +  D  G  P+ +A++  
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE-Y 121

Query: 177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV 236
            H           + ++K+LL    D+N+ D +    + WAA +G  D    L+ A  ++
Sbjct: 122 KH-----------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 237 EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
            A +  G + LH AA     +C+   ++   +DV + +  G + L  A       +   +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQM 229

Query: 297 LQYGA 301
            +   
Sbjct: 230 SKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  138 bits (350), Expect = 1e-39
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 14/191 (7%)

Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
            N   +     S +H A   G V+    ++ AGA   T       P+  A++   H    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNH---- 56

Query: 183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA-NVEAHDK 241
                  L  +K L+     V+  D +G   +  AA  G  + +  L+  G  +V   D 
Sbjct: 57  -------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
            G T +  A    H + ++ L++  G+D+++ D      L +A   G  D   +LL    
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168

Query: 302 TPNRQDRKGRT 312
             +  +  G +
Sbjct: 169 DLHAVNIHGDS 179

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (327), Expect = 3e-36
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 47/240 (19%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +  T LM AA+      VK ++ +    V  +D    T LH  A+       + +L    
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             +   D+ G+TP+  A    +V L+  LL+  +++N +DNE +                
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI--------------- 146

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
                              +H+A+   G            + + ++LL    D++ V+  
Sbjct: 147 ------------------CLHWAAFS-GC-----------VDIAEILLAAKCDLHAVNIH 176

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA     D ++  +   ++V   +K+G T L CA+          +      D
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA-LQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  107 bits (269), Expect = 1e-27
 Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
           +++  +  ++ R P+  AA AG  D    LV+AGAN++   +D  T L  AA   H E +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT-PNRQDRKGRT 312
           + LI   GA VD  D  G + L  A   GH +    LL  G    N QD  G T
Sbjct: 61  KYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  174 bits (444), Expect = 5e-53
 Identities = 50/262 (19%), Positives = 83/262 (31%), Gaps = 9/262 (3%)

Query: 56  NAVRERDRTRKTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGNVP 113
             V        T LH    +      + +L      + ++  ++ G T LHLAAI G   
Sbjct: 3   GYV---TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPS--TPDIHGGYPIHY 171
            +  L A  A V   +  GH+ +H A           +L           D +       
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK 231
                   + + +                + +   + DG  P+  A     ++ +  L  
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 232 AGANVEAHDKD-GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHA 290
           AGA++   +   G T LH A        LE L+   GAD       G + L  A+   + 
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP 238

Query: 291 DATTLLLQYGATPNRQDRKGRT 312
               LL  +GA          +
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLS 260

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  167 bits (425), Expect = 3e-50
 Identities = 52/288 (18%), Positives = 90/288 (31%), Gaps = 31/288 (10%)

Query: 30  EGATSLMYAAQQGKDAEVKAILAS--RPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
           +G T+L  A     +  +  +L        +  ++   +T LH  A     S  E +   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG--------------H 133
               +  A+  G+T LHLA           LL  R +     ++                
Sbjct: 68  GAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 134 SVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVL 193
                +    E E          +    +  G  P+H A                   ++
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKD-----------AEMV 174

Query: 194 KVLLHHNVDVNVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
           ++L     D+N  +   GR P+  A  A ++  +  L+KAGA+  A    G T L  A  
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234

Query: 253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
           R +      L    GA       +  S    + +   +D      +Y 
Sbjct: 235 RPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  155 bits (394), Expect = 1e-45
 Identities = 57/240 (23%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN---VNSQDNEGHSVVHWATVCGEVEA 147
           +     EDG T LHLA I  + P +  LL   A    ++ Q++ G + +H A + GE   
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
           +E + +AGA     +  G   +H A ++                   VLL          
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRV-RA-----------HTCACVLLQPRPSHPRDA 108

Query: 208 KDGRQP--------------ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
            D                   + +     ++           +EA + DG T LH A   
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 254 GHRECLETLITLCGADVDVIDTN-GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              E +  L    GAD++  +   G + L  AV    A    LLL+ GA P  +   GRT
Sbjct: 169 KDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.9 bits (224), Expect = 4e-21
 Identities = 23/148 (15%), Positives = 43/148 (29%)

Query: 27  NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
                       +Q   + E +         +   +    T LH    +        + +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
              DL +     G TPLHLA  A    ++  LL   A+  ++   G + +  A +     
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239

Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQ 174
               + + GA           P   +  
Sbjct: 240 LARLLRAHGAPEPEDGGDKLSPCSSSGS 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  174 bits (443), Expect = 6e-53
 Identities = 56/275 (20%), Positives = 101/275 (36%), Gaps = 19/275 (6%)

Query: 38  AAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADE 97
            +           L  R + +   D  +   +               L   P + +A   
Sbjct: 2   GSSHHHHHHSS-GLVPRGSHMASMDGKQGG-MDGSKPAGPRDFPGIRLLSNPLMGDA--V 57

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
             ++P+H AAI G+   +  L++    VN    +  S +H A + G +  ++ +L  GA+
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
            +        P+  A    G               + +LL H   V   + D   PI  A
Sbjct: 118 VNGVTADWHTPLFNACV-SGS-----------WDCVNLLLQHGASVQ-PESDLASPIHEA 164

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           A  G  + + +L+  G N++       T L+ A     R C++ L+   GADV+      
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVN-QGKGQ 222

Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            S L   V     +   LL+ +GA    ++ +G+ 
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (436), Expect = 9e-52
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 25/278 (8%)

Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
            M+G+         G       ++            +  + +H  A +        ++  
Sbjct: 30  GMDGSKPAGPRDFPGIRLLSNPLMG--------DAVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
               +     D  +PLH A + G++  +  LL H A VN    + H+ +  A V G  + 
Sbjct: 82  GWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140

Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
           +  +L  GA           PIH A++  GH           +  +  L+ +  +++   
Sbjct: 141 VNLLLQHGASVQPES-DLASPIHEAARR-GH-----------VECVNSLIAYGGNIDHKI 187

Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
                P+  A        +  L+++GA+V    K   + LH        E    L+   G
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD-FG 245

Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
           AD    +  G   +          A   L + GA+  +
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  147 bits (373), Expect = 2e-42
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 18/245 (7%)

Query: 27  NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
           + +   + +  AA  G    ++ +++     V        + LH       LSC + +L+
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
                +     D +TPL  A ++G+   ++ LL H A+V   +++  S +H A   G VE
Sbjct: 114 HGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE 171

Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
            + ++++ G        H G P++ A +                A +K LL    DVN  
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACE-NQQ-----------RACVKKLLESGADVNQ- 218

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC 266
            K    P+       S +    L+  GA+ +A + +G   +           L   +   
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLERE 276

Query: 267 GADVD 271
           GA + 
Sbjct: 277 GASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (346), Expect = 1e-38
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 16/208 (7%)

Query: 105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIH 164
           + +   +      L+   +++ S D +   +   +   G  +     L +        + 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM-DGSKPAGPRDFPGIRLLSNPLMGD-AVS 58

Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
              P+H A+   GH              L+ L+     VN++  D   P+  A   G   
Sbjct: 59  DWSPMHEAAI-HGH-----------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS 106

Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
            +  L+K GA V     D  T L  A   G  +C+  L+   GA V   +++  S +  A
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEA 164

Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
              GH +    L+ YG   + +     T
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGT 192

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           + A+ +  AA++G    V +++A   N +  +     T L+   EN   +C + +LE   
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D+     +   +PLH      +  L   L+   A+  +++ EG   V        +    
Sbjct: 215 DV--NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-L 271

Query: 150 TVLSAGAEPSTP 161
            +   GA    P
Sbjct: 272 FLEREGASLPKP 283

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  172 bits (438), Expect = 1e-52
 Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 21/250 (8%)

Query: 60  ERDRTRKTVLHYCAENTILSCAETILEVAPDL---IEAADEDGYTPLHLAAIAGNVPLIH 116
             D    T LH       L     ++ +       ++  +    TPLHLA I     ++ 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 117 TLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST----PDIHGGYPIHYA 172
            L+   A+  + D  G +  H A        L  +L + A  +      +  G   +H A
Sbjct: 64  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 173 SQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD-KDGRQPILWAASAGSSDAILALVK 231
                               +++LL    D++ VD K GR P++ A    S   +  L++
Sbjct: 124 VN-TEC-----------QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171

Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
            GANV A    G +ALH A+ RG    + TL+   GAD  + + +  + L  A +    D
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 292 ATTLLLQYGA 301
                    A
Sbjct: 231 ILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  167 bits (426), Expect = 8e-51
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 22/231 (9%)

Query: 91  LIEAADEDGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
           +   ADEDG TPLH+A + GN+P    L++        ++  +N   + +H A +     
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH----NVD 202
            +  +++AGA P   D HG    H A +                  L+ LL       +D
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACE-HRS-----------PTCLRALLDSAAPGTLD 108

Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLET 261
           +   + DG   +  A +    + +  L++ GA+++A D K G + L  A        ++ 
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L+   GA+V+    +G SAL  A   G       L++ GA  + ++    T
Sbjct: 169 LL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 218

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  152 bits (386), Expect = 8e-45
 Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 21/242 (8%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNA---VRERDRTRKTVLHYCAENTILSCAETILE 86
           +G T L  A  QG    V  ++         +   +  R+T LH     T+ S    ++ 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA----NVNSQDNEGHSVVHWATVC 142
                  A D  G T  HLA    +   +  LL   A    ++ +++ +G + +H A   
Sbjct: 68  AGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

Query: 143 GEVEALETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV 201
              E ++ +L  GA+    DI  G  P+ +A +               L+++++LL H  
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NS-----------LSMVQLLLQHGA 174

Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
           +VN     G   +  A+  G    +  LV++GA+    +    T L  A SR   + L  
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 262 LI 263
             
Sbjct: 235 KA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  117 bits (296), Expect = 1e-31
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 17/209 (8%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE---V 87
             T L  A      + V+ ++ +  +     DR  +T  H   E+   +C   +L+    
Sbjct: 46  RQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATVCGEVE 146
               +EA + DG T LH+A        +  LL   A++++ D   G S +  A     + 
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
            ++ +L  GA  +     G   +H AS   G            L +++ L+    D ++ 
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGR-GL-----------LPLVRTLVRSGADSSLK 212

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGAN 235
           +     P++ A S    D +       A+
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 4e-18
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILE 86
           +G T+L  A        V+ +L  R    +AV  +    ++ L +  EN  LS  + +L+
Sbjct: 115 DGLTALHVAVNTECQETVQ-LLLERGADIDAVDIKSG--RSPLIHAVENNSLSMVQLLLQ 171

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
              + + A    G + LH A+  G +PL+ TL+   A+ + ++    + +  A     ++
Sbjct: 172 HGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 147 ALETVLSAGA 156
            L    +  A
Sbjct: 231 ILRGKATRPA 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  174 bits (445), Expect = 2e-52
 Identities = 67/286 (23%), Positives = 108/286 (37%), Gaps = 31/286 (10%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVAP 89
               L+ AA+ G + ++ A+L    N      D  + T LH  A    +   + +L+   
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D + A D+ G  PLH A   G+  +   LL H A VN+ D    + +H A     VE   
Sbjct: 83  D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +LS GA+P+  + HG   +  A                    L      +         
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTP-EL-----------RERLTYEFKGH--------- 180

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET---LITLC 266
               +L AA       +   +          +   TALHCA +  H +  +    L+   
Sbjct: 181 ---SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK- 236

Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           GA+V+  + +  + L  A    H D   +L ++GA  N  D  G+T
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  174 bits (444), Expect = 3e-52
 Identities = 72/306 (23%), Positives = 105/306 (34%), Gaps = 38/306 (12%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
             +T L  AA   +   V+ +L    + V  +D+     LH           E +L+   
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             + A D   +TPLH AA    V +   LL+H A+    +  G S V  A      E L 
Sbjct: 116 C-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174

Query: 150 ---------------------TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
                                  L+               +H A     H          
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA-SLHPK-------- 225

Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
              V ++LL    +VN  +KD   P+  AA    +D +  L K GA + A D  G TALH
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285

Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
            AA  GH +    L++  G+D  +I   G +A          +A   +L         D 
Sbjct: 286 RAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDV 339

Query: 309 KGRTYE 314
             R  E
Sbjct: 340 DYRLLE 345

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  157 bits (399), Expect = 1e-45
 Identities = 55/245 (22%), Positives = 83/245 (33%), Gaps = 36/245 (14%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALET 150
                E     L  AA +GN   +  LL     N ++ D    + +H A     V  ++ 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
           +L  GA+    D  G  P+H A    GH             V ++LL H   VN +D   
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACS-YGH-----------YEVTELLLKHGACVNAMDLWQ 124

Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT------ 264
             P+  AAS    +    L+  GA+    +  G +A+  A +   RE L           
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 265 --------------LCGADVDVIDTNGCSALFYAVTLGHA---DATTLLLQYGATPNRQD 307
                                    +  +AL  AV   H        LLL+ GA  N ++
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 308 RKGRT 312
           +   T
Sbjct: 245 KDFMT 249

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (333), Expect = 6e-36
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 12/161 (7%)

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
               A+      +    +  A++                 ++ +L   NV+ +  D    
Sbjct: 11  ADPSAKAVLTGEYKKDELLEAARSGNE-----------EKLMALLTPLNVNCHASDGRKS 59

Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
            P+  AA       +  L++ GA+V A DK GL  LH A S GH E  E L+   GA V+
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVN 118

Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +D    + L  A +    +  +LLL +GA P   +  G++
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (296), Expect = 1e-30
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILA-LVKAGANVEAHDKDGLTALHCAASRG 254
           L   +    +  +  +  +L AA +G+ + ++A L     N  A D    T LH AA   
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               ++ L+   GADV   D  G   L  A + GH + T LLL++GA  N  D    T
Sbjct: 70  RVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  115 bits (290), Expect = 7e-30
 Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 43/248 (17%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
              T L  AA + +      +L+   +     +   K+ +       +        +   
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 90  DL--------------------IEAADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVN 126
            L                         +   T LH A  + +         LL   ANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
            ++ +  + +H A      + +E +   GA+ +  D  G   +H A+   GH        
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGH-------- 292

Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA 246
              L   ++LL +  D +++   G             +A+  ++     +   D D    
Sbjct: 293 ---LQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY--R 342

Query: 247 LHCAASRG 254
           L  A+  G
Sbjct: 343 LLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 22/87 (25%), Positives = 31/87 (35%)

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
            L L    A      +     L  AA  G+ E L  L+T    +    D    + L  A 
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66

Query: 286 TLGHADATTLLLQYGATPNRQDRKGRT 312
                    LLLQ+GA  + +D+ G  
Sbjct: 67  GYNRVRIVQLLLQHGADVHAKDKGGLV 93

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T+L  AA  G     + +L+   +          T      E       + IL  + 
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNEA-----VQQILSEST 332

Query: 90  DLIEAADEDGYTPLHLAAIAGN 111
             +  +D D    L  A+ AG+
Sbjct: 333 P-MRTSDVDY--RLLEASKAGD 351

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  169 bits (432), Expect = 5e-51
 Identities = 65/296 (21%), Positives = 113/296 (38%), Gaps = 21/296 (7%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +   +       G + +++  +  R    + +       L  C+          +LE   
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSG-DTEEVLRLLERGA 64

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D I  A+ DG T LH A I  NV ++  L+ + AN+N  DNEG   +H A  CG ++  E
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHA-------SEMGNDVRVGL---------AVL 193
            ++S GA     +  G  P+  A +            +  G D+                
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
           + L   +++     K G   +  AA+ G ++ +  L++A  +V   D DG T LH AA  
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK 309
           G  E    L+     D++ ++  G +A   A          L  +     + +  K
Sbjct: 243 GKEEACRILV-ENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  151 bits (385), Expect = 4e-44
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
           ++ AD        L    G+   +   +  R     + ++G +V   A   G+ E +  +
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
           L  GA+ +  ++ G   +H A     +           + ++K L+ +  ++N  D +G 
Sbjct: 60  LERGADINYANVDGLTALHQACI-DDN-----------VDMVKFLVENGANINQPDNEGW 107

Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD 271
            P+  AAS G  D    L+  GA+V A + +G T L  A      E L+  +   G D++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167

Query: 272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
                  +A      +   DA   L        R  + G T
Sbjct: 168 -------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  165 bits (421), Expect = 7e-50
 Identities = 63/277 (22%), Positives = 96/277 (34%), Gaps = 35/277 (12%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           G T LM A+  G                           +   E    +     +     
Sbjct: 10  GFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIYQGAS 48

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
           L    D  G T LHLAA          LL   A+ N QDN G + +H A         + 
Sbjct: 49  LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108

Query: 151 VLSAGA-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
           ++   A +       G  P+  A+++                +L+ L++ + DVN VD  
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARL-AV-----------EGMLEDLINSHADVNAVDDL 156

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G+  + WAA+  + DA + L+K GAN +  +    T L  AA  G  E  + L+    A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-FAN 215

Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ 306
            D+ D         A    H D   LL       +  
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  160 bits (407), Expect = 8e-48
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 28/236 (11%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHT-------------LLAHRANV-NSQDNEGHSVVH 137
           +     DG+TPL +A+ +G                     +   A++ N  D  G + +H
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 138 WATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL 197
            A      +A + +L A A+ +  D  G  P+H A                   V ++L+
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADA-----------QGVFQILI 110

Query: 198 -HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR 256
            +   D++    DG  P++ AA       +  L+ + A+V A D  G +ALH AA+  + 
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170

Query: 257 ECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +    L+   GA+ D+ +    + LF A   G  +   +LL + A  +  D   R 
Sbjct: 171 DAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 92.1 bits (230), Expect = 4e-22
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 201 VDVNVVDKDGRQPILWAASAGSSDAILA-------------LVKAGANVEAH-DKDGLTA 246
           +DVNV   DG  P++ A+ +G                     +  GA++    D+ G TA
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT-PNR 305
           LH AA     +  + L+    AD ++ D  G + L  AV+        +L++  AT  + 
Sbjct: 61  LHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 306 QDRKGRT 312
           +   G T
Sbjct: 120 RMHDGTT 126

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.9 bits (193), Expect = 6e-17
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +G T L+ AA+   +  ++ ++ S  + V   D   K+ LH+ A    +  A  +L+   
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           +  +  +    TPL LAA  G+      LL H AN +  D+        A      + + 
Sbjct: 182 N-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240

Query: 150 TVLSAGA 156
            +     
Sbjct: 241 LLDLEHH 247

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  164 bits (417), Expect = 1e-49
 Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 24/231 (10%)

Query: 93  EAADEDGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
           +   EDG + LHLA I         +I  +    A +N Q+N   + +H A +  + E  
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD------ 202
           E +L AG +P   D  G  P+H A +  G            LA + VL            
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQ-GC-----------LASVGVLTQSCTTPHLHSI 109

Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK-DGLTALHCAASRGHRECLET 261
           +   + +G   +  A+  G    +  LV  GA+V A +  +G TALH A    + + +  
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L+  CGADV+ +   G S                L Q      +   +   
Sbjct: 170 LL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 219

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (377), Expect = 1e-43
 Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 23/244 (9%)

Query: 60  ERDRTRKTVLHYCAENTILSCAETILEVAPD---LIEAADEDGYTPLHLAAIAGNVPLIH 116
           +      + LH    +   +    ++         +   +    TPLHLA I     +  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 117 TLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP------DIHGGYPIH 170
            LL    +   +D  G++ +H A   G + ++  +  +   P         + +G   +H
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 171 YASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK-DGRQPILWAASAGSSDAILAL 229
            AS   G+           L ++++L+    DVN  +  +GR  +  A    + D +  L
Sbjct: 123 LASI-HGY-----------LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

Query: 230 VKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
           +K GA+V      G +       R      + L  L   +   +         Y      
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESEF 229

Query: 290 ADAT 293
            + T
Sbjct: 230 TEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  127 bits (321), Expect = 2e-35
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 23/241 (9%)

Query: 30  EGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
           +G + L  A          EV   +      +  ++  ++T LH          AE +L 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN------VNSQDNEGHSVVHWAT 140
              D  E  D  G TPLHLA   G +  +  L            + + +  GH+ +H A+
Sbjct: 67  AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125

Query: 141 VCGEVEALETVLSAGAEPSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
           + G +  +E ++S GA+ +  +   G   +H A  +  +             ++ +LL  
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-QN-----------PDLVSLLLKC 173

Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
             DVN V   G  P        S+     L +          +              E  
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

Query: 260 E 260
           E
Sbjct: 234 E 234

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  162 bits (413), Expect = 4e-49
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 14/229 (6%)

Query: 77  ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVV 136
             +     +     L    D  G T LHLAA          LL   A+ N QDN G + +
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62

Query: 137 HWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKV 195
           H A         + ++   A +       G  P+  A+++                +L+ 
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AV-----------EGMLED 110

Query: 196 LLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
           L++ + DVN VD  G+  + WAA+  + DA + L+K GAN +  +    T L  AA  G 
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170

Query: 256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
            E  + L+    A+ D+ D         A    H D   LL +Y    +
Sbjct: 171 YETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  119 bits (302), Expect = 9e-33
 Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 146 EALETVLSAGAE-PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
             +   +  GA   +  D  G   +H A++                   K LL  + D N
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAAR-YSR-----------SDAAKRLLEASADAN 52

Query: 205 VVDKDGRQPILWAASAGSSDAILALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLI 263
           + D  GR P+  A SA +      L++  A +++A   DG T L  AA       LE LI
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               ADV+ +D  G SAL +A  + + DA  +LL+ GA  + Q+ +  T
Sbjct: 113 -NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (297), Expect = 6e-32
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 20/219 (9%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T+L  AA+  +    K +L +  +    +D   +T LH           + ++    
Sbjct: 24  TGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             ++A   DG TPL LAA      ++  L+   A+VN+ D+ G S +HWA     V+A  
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L  GA     +     P+  A++  G                KVLL H  + ++ D  
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAR-EGS-----------YETAKVLLDHFANRDITDHM 190

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
            R P   A      D +  L +               LH
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDEYNL-------VRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
           +G T L+ AA+      +   L +  +A V   D   K+ LH+ A    +  A  +L+  
Sbjct: 91  DGTTPLILAARLAV-EGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
            +  +  +    TPL LAA  G+      LL H AN +  D+        A      + +
Sbjct: 149 AN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207

Query: 149 ETVLSAGAEPSTPDIHG 165
             +       S   +HG
Sbjct: 208 RLLDEYNLVRSP-QLHG 223

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  164 bits (417), Expect = 4e-48
 Identities = 46/307 (14%), Positives = 79/307 (25%), Gaps = 47/307 (15%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
           H+   G   +  A    K   V A++              +       E           
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNEC-------DER 124

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPL--IHTLLAHRANVNSQDNEGHSVVHWATVCG 143
           EV           G T LH     G   L  I  L+   A+  ++D    + +  A    
Sbjct: 125 EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184

Query: 144 EVEALETVL-----SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLH 198
             EAL+ ++      +       +  G   +H+A                   V    + 
Sbjct: 185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL-INW-----------EDVAMRFVE 232

Query: 199 HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV---EAHDKDGLTA--------- 246
             +DVN+ D +   P+  +  A        L++             +G T          
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD 292

Query: 247 -LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
            +  AA    +E L+ L      +V      G                 + L   A    
Sbjct: 293 FVPAAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 306 QDRKGRT 312
           + R    
Sbjct: 352 RSRSRAR 358

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  160 bits (406), Expect = 1e-46
 Identities = 48/261 (18%), Positives = 85/261 (32%), Gaps = 33/261 (12%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
             + D      +H  A          ++E         +  G T LHLA   G V     
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 118 LLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG 177
           L +     +     G   +H A +  + + +  ++    E       G  P    ++ C 
Sbjct: 72  LASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNE-CD 122

Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS--DAILALVKAGAN 235
                         V +      +  +V    G+  + W    G    + I  LV+ GA+
Sbjct: 123 E-----------REVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165

Query: 236 VEAHDKDGLTALHCAASRGHRECLETLITLC----GADVDVIDTNGCSALFYAVTLGHAD 291
             A DK   T L  A    +RE L+ ++          +D  +  G S L +A+ +   D
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

Query: 292 ATTLLLQYGATPNRQDRKGRT 312
                ++ G   N +D +   
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTV 246

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  158 bits (402), Expect = 5e-46
 Identities = 48/326 (14%), Positives = 99/326 (30%), Gaps = 62/326 (19%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN-------------- 75
           E    +  AA++G+  EV+ ++ +  +    ++R   T LH   +               
Sbjct: 19  ENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGE 77

Query: 76  --------TILSCAETI--LEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
                     +  A      ++   L+E A E G  P  L        +           
Sbjct: 78  VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN------EIGS 131

Query: 126 NSQDNEGHSVVHWATVCGE--VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMG 183
           + +  +G + +HW    G   +E ++ ++  GA P+  D     P+  A +   +     
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF-RN----- 185

Query: 184 NDVRVGLAVLKVLLH-----HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
                    L +++       ++ ++  +K G   + WA      D  +  V+ G +V  
Sbjct: 186 ------REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 239 HDKDGLTALHCAASRGHRECLETLI------------TLCGADVDVIDTNGCSALFYAVT 286
            D +    L+ +         + L+               G  V          +  A  
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 287 LGHADATTLLLQYGATPNRQDRKGRT 312
               +   LL +      R    G  
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAG 325

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  118 bits (299), Expect = 5e-31
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 29/194 (14%)

Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
            + N    D+E    +H A   G+ + +  ++  G  P+  +  G   +H A +  G   
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGC-- 65

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD 240
                    +   K L       +     G++PI  A  A  +D ++ALV+         
Sbjct: 66  ---------VDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE----- 109

Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG--HADATTLLLQ 298
             G            RE  E           V    G +AL + V LG  + +   +L+Q
Sbjct: 110 -RGQMPESLLNECDEREVNE-------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 299 YGATPNRQDRKGRT 312
            GA+P  +D+   T
Sbjct: 162 LGASPTAKDKADET 175

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 99.6 bits (249), Expect = 5e-24
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 198 HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE 257
              ++    D +  + I  AA  G +D +  L++ G +    ++ G TALH A   G  +
Sbjct: 8   FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67

Query: 258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
             + L +  G        +G   +  AV     D    L++      +
Sbjct: 68  TAKYLAS-VGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQ 112

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 229 LVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
                 N    D + +  +H AA +G  + +  LI   G    + +  GC+AL  A   G
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFG 64

Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
             D    L   G   +     G+ 
Sbjct: 65  CVDTAKYLASVGEVHSLWH--GQK 86

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 262 LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +      +    D      +  A   G  D    L++ G +P  Q+R G T
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT 55

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 6/81 (7%), Positives = 18/81 (22%), Gaps = 2/81 (2%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
            + +     +  AA   K   ++ +       V     T         +    +     L
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKL 343

Query: 86  EVAPDLIEAADEDGYTPLHLA 106
             +   +            ++
Sbjct: 344 APSAP-VRTRSRSRARSSAVS 363

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  156 bits (398), Expect = 7e-47
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 19/221 (8%)

Query: 99  GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
              PLH A +      +  LL +  + +  +D +G   +HW+      E    +LS    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 158 PSTPDIHGGY---PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV--DVNVVDKDGRQ 212
            +  D        P H A  + G+           L V+K L    +  D+N +   G  
Sbjct: 62  VNLDDYPDDSGWTPFHIACSV-GN-----------LEVVKSLYDRPLKPDLNKITNQGVT 109

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
            +  A      +    L++ GA+V   DK     LH AAS G  + +E L  L  + V+ 
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 273 IDTNGCSALFYAVTLGHADATTLLL-QYGATPNRQDRKGRT 312
            D  G + LF+A+  GH DA  LL+ +YGA  +  D KG  
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  145 bits (368), Expect = 2e-42
 Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 18/226 (7%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
              LH           + +L   P L+   D+DG  PLH +       +   LL+   NV
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 126 NSQ---DNEGHSVVHWATVCGEVEALETVLS--AGAEPSTPDIHGGYPIHYASQMCGHAS 180
           N     D+ G +  H A   G +E ++++       + +     G   +H A        
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG-KKW-- 119

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN-VEAH 239
                      V + L+ +   V + DK  + P+  AAS GS   I  L   G + V   
Sbjct: 120 ---------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170

Query: 240 DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV 285
           DK G T L  A + GH +    L+   GA+ D++D  G  A   A+
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 93.7 bits (234), Expect = 8e-23
 Identities = 41/232 (17%), Positives = 62/232 (26%), Gaps = 80/232 (34%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T    A   G    VK++                                       
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPLKP-------------------------------- 98

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             +      G T LHLA       +   L+ + A+V  +D                    
Sbjct: 99  -DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI--------------- 142

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDK 208
                             P+H A+   G            L ++++L       VN  DK
Sbjct: 143 ------------------PLHRAAS-VGS-----------LKLIELLCGLGKSAVNWQDK 172

Query: 209 DGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECL 259
            G  P+  A + G  DA + LV K GA  +  D  G  A   A +   ++  
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  156 bits (396), Expect = 1e-46
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 19/220 (8%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
              + G   +  A           L     ++    +   +     T  G        L 
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG-----LI 61

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
                +        P+H A++  G+           L+ L+  L + V VN +DK G   
Sbjct: 62  PSNYVAEQAESIDNPLHEAAK-RGN-----------LSWLRECLDNRVGVNGLDKAGSTA 109

Query: 214 ILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           + WA   G  D +  L  +    +   +K G TALH AA +G+ + ++ L+   GA  D+
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDL 168

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +     A   A     A          A     + +   
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  143 bits (364), Expect = 7e-42
 Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 20/227 (8%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
           +  +            + +     D I    +   T        G      T L     V
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
             Q     + +H A   G +  L   L      +  D  G   +++A    GH       
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GH------- 118

Query: 186 VRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL 244
                 ++++L    N+++N  +K G   +  AA  G +D +  L+  GA  +  + +  
Sbjct: 119 ----KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174

Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
            A   A +      L+       A   + +         +    H  
Sbjct: 175 LAFDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 90.8 bits (226), Expect = 9e-22
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
                L  AA++G  + ++  L +R   V   D+   T L++          E +     
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             +   ++ G T LH AA  G   ++  LLA  A  + ++ E       AT       L+
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK 190

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGH 178
                 A  +  +         +     H
Sbjct: 191 KKQGTDAVRTLSNAEDYLDDEDSDL-EHH 218

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  156 bits (397), Expect = 4e-46
 Identities = 35/277 (12%), Positives = 85/277 (30%), Gaps = 28/277 (10%)

Query: 38  AAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADE 97
                K  ++K+ L+S      + D    +  +Y   +  +    T+L          + 
Sbjct: 6   RINTWKSKQLKSFLSS--KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE- 61

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
               PLH AA   +  ++  LL    + +  D++G++ +++A   G ++ ++  +     
Sbjct: 62  -NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120

Query: 158 PSTPDIHGGY-PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW 216
                  G     ++A  +              ++++   L                I  
Sbjct: 121 LMFYGKTGWKTSFYHAVML-ND-----------VSIVSYFLSEI-PSTFDLAILLSCIHI 167

Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADVDVIDT 275
               G  D ++ L+    +   ++       +  A      E L+ L      ++     
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIY---- 222

Query: 276 NGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              SA    V L  A+   ++++              
Sbjct: 223 ---SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDL 256

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  113 bits (285), Expect = 1e-29
 Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 24/227 (10%)

Query: 27  NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
           N +E    L  AA       VK +L S  +   + D    T L+Y  ++  +   +  ++
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 87  VAPDLIEAADEDGY-TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
                +    + G+ T  + A +  +V ++   L+   +         S +H     G V
Sbjct: 117 KNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHV 174

Query: 146 EALETVLSAGAEPSTPDIHGGYP-IHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
           + +  +L      +T +     P I  A                 + +L+ L  +++++ 
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAID-NKD-----------IEMLQALFKYDINIY 222

Query: 205 VVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
             +               ++    +++     ++        +    
Sbjct: 223 SANL-------ENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 24/208 (11%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRT-RKTVLHYCAENTILSCAETILEVA 88
           +G T+L YA   G    VK  +      +    +T  KT  ++      +S     L   
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVV-HWATVCGEVEA 147
           P           + +H+    G+V ++  LL +  + N+ ++         A    ++E 
Sbjct: 153 PS--TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEM 210

Query: 148 LETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
           L+ +        + +            +                + K+++  +V+     
Sbjct: 211 LQALFKYDINIYSAN-------LENVLL-DD-----------AEIAKMIIEKHVEYKSDS 251

Query: 208 KDGRQPILWAASAGSSDAILALVKAGAN 235
                 I+         +    ++    
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELRLMYV 279

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 18/169 (10%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 22  DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA 81
               +      TS  +A      + V   L+              + +H   +N  +   
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMM 177

Query: 82  ETILEVAPDLIEAADEDGYTP-LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT 140
             +L+         +   + P + LA    ++ ++  L  +  N+ S +           
Sbjct: 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENV 229

Query: 141 VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG 189
           +  + E  + ++    E  +        I   ++          ++R+ 
Sbjct: 230 LLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK-LDEIISKNKELRLM 277

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  146 bits (372), Expect = 2e-43
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 19/204 (9%)

Query: 60  ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL 119
             D+  + V     E +I    +        L    D    TPL +A + G    I  L+
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDF-------LRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 120 AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA 179
            +   +  +D EG + + WA     +   E +LS G+  +T D  G  P+ ++    G+ 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII-FGY- 113

Query: 180 SEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAH 239
                       +   LL H  +VN  + +G  P++ A+  G S+ +  L++ GA++ A 
Sbjct: 114 ----------SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 240 DKDGLTALHCAASRGHRECLETLI 263
           D  GLTA   A   G +E ++   
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  122 bits (308), Expect = 7e-34
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 19/187 (10%)

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
           +  D  G  V          + L+ + +        D +   P+  A    G        
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACM-LGM------- 47

Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
                  +  L+ +   +   D +G   ++WA           L+  G+NV   D  G T
Sbjct: 48  ----ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103

Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR 305
            L  +   G+ E    L+   GA+V+  +  G + L  A   G ++    LL+ GA  + 
Sbjct: 104 PLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162

Query: 306 QDRKGRT 312
           +D  G T
Sbjct: 163 RDLTGLT 169

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           EG+T+L++A +  +    + +L+   N V  +D + KT L +         +  +LE   
Sbjct: 67  EGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           + +   + +G TPL +A+  G   ++  LL   A+++++D  G +    A + G  E ++
Sbjct: 126 N-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

Query: 150 TVLSAGA 156
                  
Sbjct: 185 IFTEVRR 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  146 bits (370), Expect = 8e-43
 Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 16/239 (6%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
             + +      +    E IL          D+D  T LH A  AG+  ++  LL     V
Sbjct: 8   IMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
           N +D+ G S +H A   G  E ++ +L  GA  +  + +G  P+HYA+            
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS----------- 115

Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLT 245
            +    +  +LL    + +  D      +  AA+ G+   +  L+   A+    D +G T
Sbjct: 116 -KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174

Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
            LH A      E  + L+T  GA + + +    + L  A   G        L  G   +
Sbjct: 175 PLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  134 bits (339), Expect = 3e-38
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
                 +LA       L   +LA ++     D +  + +HWA   G  E +E +L  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
            +  D  G  P+H A+                  ++K LL     VN V+++G  P+ +A
Sbjct: 66  VNDKDDAGWSPLHIAASAG------------XDEIVKALLVKGAHVNAVNQNGCTPLHYA 113

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           AS    +  + L++ GAN +A D    TA+H AA++G+ + +  L+    A  ++ DT G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEG 172

Query: 278 CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            + L  A      +    L+  GA+   ++++ +T
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  134 bits (338), Expect = 5e-38
 Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 19/247 (7%)

Query: 29  MEGATS---LMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
           MEG  S   +   A  GK  E+K  + +  +     D+  +T LH+          E +L
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
           ++    +   D+ G++PLH+AA AG   ++  LL   A+VN+ +  G + +H+A      
Sbjct: 61  QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
           E    +L  GA P   D +    +H A+   G+           L ++ +LL +    N+
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAA-KGN-----------LKMVHILLFYKASTNI 167

Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
            D +G  P+  A      +    LV  GA++   +K+  T L  A   G    +   +  
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRL-A 224

Query: 266 CGADVDV 272
            G +  +
Sbjct: 225 EGEEASM 231

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  143 bits (363), Expect = 2e-42
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 14/180 (7%)

Query: 99  GYTPLHLAAIAGNVPLIHTLLAHRAN-VNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
               +H  A  G +  +   L    N VN  D  G + + WA+  GE+E +  +L  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
           P          +  AS   G+             ++ +LL  +VD+N+ D +G  P+L+A
Sbjct: 62  PHILAKERESALSLAST-GGY-----------TDIVGLLLERDVDINIYDWNGGTPLLYA 109

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
                   + AL+  GA++      G T +  A + G+R+  + +       +   +   
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  120 bits (303), Expect = 2e-33
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD-VNVVDKDGRQPILWAASAGSS 223
               IH  +   G            L  LK  L    + VN  D+ G  P++WA++ G  
Sbjct: 2   DSLSIHQLAAQ-GE-----------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEI 49

Query: 224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
           + +  L++ GA+     K+  +AL  A++ G+ + +  L+     D+++ D NG + L Y
Sbjct: 50  ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLY 108

Query: 284 AVTLGHADATTLLLQYGATPNRQDRKGRT 312
           AV   H      LL  GA    +   G T
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYT 137

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 82.5 bits (205), Expect = 3e-19
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 2/139 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L++A+  G+   V+ +L    +      + R++ L   +          +LE   
Sbjct: 35  RGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDV 93

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D I   D +G TPL  A    +V  +  LLA  A++ ++ + G++ +  A   G  +  +
Sbjct: 94  D-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152

Query: 150 TVLSAGAEPSTPDIHGGYP 168
            + +   +    ++    P
Sbjct: 153 VIENHILKLFQSNLVPADP 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (358), Expect = 3e-41
 Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 20/211 (9%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
             +    L  A       +   L      V+  D EG++ ++ A    ++E  + ++  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPI 214
           A+ +  +     P  YA    G              +L  +L H   D+N  ++ G   +
Sbjct: 63  ADINLQNSISDSPYLYAGA-QGR-----------TEILAYMLKHATPDLNKHNRYGGNAL 110

Query: 215 LWAASAGSSDAILALVKAG-ANVEAHDKDGLTALHCAA-----SRGHRECLETLITLCGA 268
           + AA  G  D +  L++ G  +++  +  G TAL  A      ++ +++ ++ L+   GA
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGA 169

Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
           D  + D +G +A+ YA   G+ + + +L QY
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  137 bits (349), Expect = 7e-40
 Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 20/210 (9%)

Query: 61  RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +      +L    +       E + +     ++  D +G TPL++A    ++ +   L+ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMCGHA 179
             A++N Q++   S   +A   G  E L  +L     + +  + +GG  +  A++  GH 
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGH- 118

Query: 180 SEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASAGSS-----DAILALVKAG 233
                     +  +K+LL     D++  +  G   ++ A           D +  L++ G
Sbjct: 119 ----------IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLI 263
           A+    D  G TA+  A  +G+ E  + L 
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 2e-30
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG 221
               G  +  A+Q                 V ++L      V+ VD +G  P+  A    
Sbjct: 3   TYEVGALLEAANQR-DT-----------KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN 50

Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
             +   AL+  GA++   +    +    A ++G  E L  ++     D++  +  G +AL
Sbjct: 51  DIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110

Query: 282 FYAVTLGHADATTLLLQYG-ATPNRQDRKGRT 312
             A   GH D   LLL+ G    + Q+  G T
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.6 bits (182), Expect = 8e-16
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
             +  +YA  QG+   +  +L      + + +R     L   AE   +   + +LE   +
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHT-----LLAHRANVNSQDNEGHSVVHWATVCGEV 145
            I+  ++ GYT L  A        ++      L+ + A+ + +DN G + + +A   G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 146 EALETVLS 153
           E  + +  
Sbjct: 192 EISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 17  ENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHY---- 71
           ++ + D   HN   G  +L+ AA++G    VK +L       +  ++    T L      
Sbjct: 93  KHATPDLNKHNR-YGGNALIPAAEKGHIDNVK-LLLEDGREDIDFQNDFGYTALIEAVGL 150

Query: 72  -CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
                      + ++E   D     D  G T +  A   G   +   L  +
Sbjct: 151 REGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (355), Expect = 4e-41
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 13/177 (7%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
                +H  A  G +  + T +     +N  D EG + + WA   G++  +E +L  GA+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
           P          +  A    G+             ++K+LL   VDVN  D +G  P+L+A
Sbjct: 62  PQLLGKGRESALSLACS-KGY-----------TDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
                   +  L+++GA+       G  ++  A + G+R   + + +     +    
Sbjct: 110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (313), Expect = 6e-35
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS 223
                +H  +   G            +  L   +     +N  D++G  P++WAA+ G  
Sbjct: 2   ANSLSVHQLAAQ-GE-----------MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI 49

Query: 224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
             +  L++ GA+ +   K   +AL  A S+G+ + ++ L+  CG DV+  D NG + L Y
Sbjct: 50  AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLY 108

Query: 284 AVTLGHADATTLLLQYGATPNRQDRKGRT 312
           AV   H     +LL+ GA P  +   G  
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYN 137

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 47/180 (26%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           EG T LM+AA  G                                   ++  E +L+   
Sbjct: 35  EGFTPLMWAAAHG---------------------------Q-------IAVVEFLLQNGA 60

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D  +   +   + L LA   G   ++  LL    +VN  D  G + + +A     V+ ++
Sbjct: 61  D-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L +GA+P+     G   +  A  + G+            +V +V+  H + +    K+
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVAL-GY-----------RSVQQVIESHLLKLLQNIKE 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  140 bits (355), Expect = 4e-41
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRAN-VNSQDNEGHSVVHWATVCGEVEALETVLS 153
              +    +      GN   +   L +  N +N  D+ G S +HWA   G    +E ++ 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
            GA  +  +     P+H A+   GH             +++ LL +  D+N V++ G  P
Sbjct: 61  RGARINVMNRGDDTPLHLAASH-GH-----------RDIVQKLLQYKADINAVNEHGNVP 108

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVI 273
           + +A   G       LV  GA V   +K G   +  A +       E    + G +++ I
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNRI 167

Query: 274 D 274
            
Sbjct: 168 P 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (302), Expect = 3e-33
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASA 220
                  I    +  G+              +++ L +   D+N  D  G  P+ WA   
Sbjct: 2   SPEFMDDIFTQCR-EGN-----------AVAVRLWLDNTENDLNQGDDHGFSPLHWACRE 49

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           G S  +  L+  GA +   ++   T LH AAS GHR+ ++ L+    AD++ ++ +G   
Sbjct: 50  GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVP 108

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L YA   G       L+  GA  +  ++ G  
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEM 140

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 35/137 (25%)

Query: 28  TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV 87
                T L  AA  G    V+ +L  + +                               
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKAD------------------------------- 97

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEA 147
               I A +E G  PLH A   G   +   L+A+ A V+  +  G   V  A        
Sbjct: 98  ----INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153

Query: 148 LETVLSAGAEPSTPDIH 164
            E     G   +     
Sbjct: 154 RERAEKMGQNLNRIPYK 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  139 bits (352), Expect = 4e-40
 Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 15/205 (7%)

Query: 55  PNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPL 114
           P   R        +L   A    L   +  ++   D     +E+G T LH A    N  +
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSI 69

Query: 115 IHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY-PIHYAS 173
           +  L+   ANVNS D+ G + +H A  C +      ++  GA      +  G        
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 174 QM-CGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA 232
               G+                 L      + +++       LW  SA   D +      
Sbjct: 130 PYREGY-----------ADCATYLADVEQSMGLMNSGAVYA-LWDYSAEFGDELSFREGE 177

Query: 233 GANVEAHDKDGLTALHCAASRGHRE 257
              V   D    T    AA  G   
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  122 bits (309), Expect = 1e-33
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 20/204 (9%)

Query: 115 IHTLLAHRANVNSQDNEGHS---VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
           + ++L    +         +   ++  A + GE+E ++  +    +PS P+  G   +H 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK 231
           A     +            +++  L+    +VN  D  G  P+  AAS   +   +ALV+
Sbjct: 61  AICG-AN-----------YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108

Query: 232 AGANVEAHD-KDGLTALHCAAS--RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG 288
            GA + A    DG TA         G+ +C   L  +    + ++++    AL+   +  
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDY-SAE 166

Query: 289 HADATTLLLQYGATPNRQDRKGRT 312
             D  +       T  R+D    T
Sbjct: 167 FGDELSFREGESVTVLRRDGPEET 190

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  116 bits (292), Expect = 2e-31
 Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 92  IEAADEDGYTP---LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
              A      P   L  AA+ G + ++   +    + +  + EG + +H A        +
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD- 207
           + +++AGA  ++PD HG  P+H A+  C               +   L+ H   +     
Sbjct: 71  DFLITAGANVNSPDSHGWTPLHCAAS-CND-----------TVICMALVQHGAAIFATTL 118

Query: 208 KDGRQPILWAASA--GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
            DG            G +D    L     ++   +   + AL   ++    E        
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS----FR 174

Query: 266 CGADVDVI--DTNGCSALFYAVTLGH 289
            G  V V+  D    +  ++A   G 
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQ 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  138 bits (351), Expect = 7e-40
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
           +  G   L               +AH   V   +    +++  +++ GE + ++ ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
            +PS P+  G   +H A    GH             ++K L+   V+VN  D DG  P+ 
Sbjct: 61  DDPSLPNDEGITALHNAVC-AGH-----------TEIVKFLVQFGVNVNAADSDGWTPLH 108

Query: 216 WAASAGSSDAILALVKAGANVEA---HDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
            AAS  +      LV++GA V A    D             G+ +C + L       + +
Sbjct: 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGI 167

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           ++     AL+        +   L ++ G       R+ 
Sbjct: 168 MNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHRED 202

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  121 bits (305), Expect = 5e-33
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 19/228 (8%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           G  SL    +          +A       + +     +L   +        + I+    D
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
                +++G T LH A  AG+  ++  L+    NVN+ D++G + +H A  C  V+  + 
Sbjct: 63  -PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 151 VLSAGAEPSTPDIHGGY---PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
           ++ +GA                    +  G+               + L      + +++
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEME-EGY-----------TQCSQFLYGVQEKMGIMN 169

Query: 208 KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH 255
           K      LW     + D +         +   + +       A     
Sbjct: 170 KGVIYA-LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (302), Expect = 1e-32
 Identities = 32/217 (14%), Positives = 67/217 (30%), Gaps = 31/217 (14%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEA-----ADEDGYTPLHLAAIAGNVPLIHTLLA 120
           +  L       +        +   + I        +      L  +++ G   L+  ++ 
Sbjct: 6   QVSLPPGKRTNLR-------KTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 121 HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
              + +  ++EG + +H A   G  E ++ ++  G   +  D  G  P+H A+  C +  
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNN-- 115

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ---PILWAASAGSSDAILALVKAGANVE 237
                    + V K L+     V  +     Q           G +     L      + 
Sbjct: 116 ---------VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
             +K  + AL     +   E    L    G  + +I 
Sbjct: 167 IMNKGVIYALWDYEPQNDDE----LPMKEGDCMTIIH 199

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  109 bits (275), Expect = 1e-28
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 161 PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
           P+I G   +    +                      + H + V   +      +L ++  
Sbjct: 1   PEITGQVSLPPGKR-TNL-----------RKTGSERIAHGMRVK-FNPLPLALLLDSSLE 47

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           G  D +  ++    +    + +G+TALH A   GH E ++ L+   G +V+  D++G + 
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTP 106

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           L  A +  +      L++ GA         
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSD 136

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  100 bits (252), Expect = 2e-25
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 30/163 (18%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
           P+  A++                 + K+L     +V+     G   +  AA   + +A +
Sbjct: 6   PLLLAAK-ENDVQA----------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAM 54

Query: 228 ALVKAGANVEAH-----DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN------ 276
            L++A   +          +G TALH A    +   +  L+   GA V    T       
Sbjct: 55  VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYR 113

Query: 277 -------GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
                  G   L +A  +G  +   LL+++GA    QD  G T
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 9e-13
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA- 301
             + L  AA     + L  L+   G +V      G +AL  A    + +A  +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 302 ----TPNRQDRKGRT 312
                   +  +G+T
Sbjct: 63  LVFEPMTSELYEGQT 77

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (330), Expect = 2e-37
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
                   D    L  AA AG    +  L+A+ A+VN++D  G + +H A   G +E +E
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L  GA+ +  D  G  P+  A+   GH           L +++VLL +  DVN  D +
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALF-GH-----------LEIVEVLLKNGADVNANDME 112

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           G  P+  AA  G  + +  L+K GA+V A DK G TA   +   G+ +  E L 
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (285), Expect = 8e-31
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
            +  A++  G               +++L+ +  DVN  D  G  P+  AA  G  + + 
Sbjct: 17  KLLEAAR-AGR-----------DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
            L+K GA+V A D  G+T L  AA  GH E +E L+   GADV+  D  G + L  A   
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMF 123

Query: 288 GHADATTLLLQYGATPNRQDRKGRT 312
           GH +   +LL+ GA  N QD+ G+T
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKT 148

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 233 GANVE-AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
           G++    H  D    L  AA  G  + +  L+   GADV+  D +G + L  A   GH +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 292 ATTLLLQYGATPNRQDRKGRT 312
              +LL+ GA  N  D  G T
Sbjct: 62  IVEVLLKNGADVNAVDHAGMT 82

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L  AA  G    V+ +L +  + V   D    T LH  A    L   E +L+   
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
           D + A D+ G T   ++   GN  L   L   
Sbjct: 138 D-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  134 bits (337), Expect = 5e-37
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 10/262 (3%)

Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA-ENTILSCAETILEVAPDL 91
            + +      +  E+   L +  +       +      + + ++ +    +       +L
Sbjct: 64  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA---TVCGEVEAL 148
               DE G TPLH      N+ L+  L+ H +N    DN G S +  A       +    
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 183

Query: 149 ETVLSAGAEP-STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD 207
           E +L          D      +H+     G              ++  ++          
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243

Query: 208 KDGRQPILWAASAGSSDAILALVK----AGANVEAHDKDGLTALHCAASRGHRECLETLI 263
            + ++      +    D+IL  +         + A D +G T L+ AA  G+   ++ L+
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303

Query: 264 TLCGADVDVIDTNGCSALFYAV 285
              GAD  + + +G   + +  
Sbjct: 304 DY-GADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 91.2 bits (226), Expect = 3e-21
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 33/225 (14%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---ILSCAETILE 86
            G T L +         VK ++    N     D   ++ L    ++         E +L+
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE 146
                +   D    T LH                H    +       +  ++  +     
Sbjct: 189 YLYPCLILEDSMNRTILH----------------HIIITSGMTGCSAAAKYYLDI----- 227

Query: 147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
            +  ++     P     +               S +          L +       +N  
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL--------ENLDLKWIIANMLNAQ 279

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA 251
           D +G   +  AA  G+   + AL+  GA+    +K GL  +   A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.5 bits (180), Expect = 5e-15
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 30  EGATSLMYAAQQG---KDAEVKAILASRPNAVRERDRTRKTVLHYCAENT---------- 76
            G + L+ A +          +A+L      +   D   +T+LH+    +          
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 77  --ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL---AHRANVNSQDNE 131
             +      I++     I++   +  +  +         ++  L         +N+QD+ 
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM 175
           G + ++ A   G +  ++ +L  GA+P   +  G  P+ + + +
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 22  DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNA---VRERDRTRKTVLHYCAENTIL 78
           ++ + +      S        +   +   L  +      +  +D    T L+  A    +
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 79  SCAETILEVAPDLIEAADEDGYTPLHLAA 107
           S  + +L+   D    A++ G  P+   A
Sbjct: 297 SIVDALLDYGAD-PFIANKSGLRPVDFGA 324

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  130 bits (328), Expect = 2e-36
 Identities = 39/247 (15%), Positives = 75/247 (30%), Gaps = 40/247 (16%)

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
           EV   +      +G     +    G+ P         A+V    +E  +    A    + 
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 58

Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
           +AL   L    +    D +G   + + + + G               +++L     D++ 
Sbjct: 59  QALS-QLLEDRDVDAVDENGRTALLFVAGL-GS-----------DKCVRLLAEAGADLDH 105

Query: 206 VD-KDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT 264
            D + G   +  AA     + + ALV+ GA++E  D+ GLTAL  A            + 
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 265 LCGADVDVIDT----------------------NGCSALFYAVTLGHADATTLLLQYGAT 302
             G  + +                          G    +        D   +   + A 
Sbjct: 166 F-GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 303 PNRQDRK 309
              +D +
Sbjct: 225 DVAKDYE 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (315), Expect = 2e-34
 Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 33/261 (12%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           EGA   +   + G             + V E     +T     A          +LE   
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLEDRD 69

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEAL 148
             ++A DE+G T L   A  G+   +  L    A+++ +D   G + +H A      E +
Sbjct: 70  --VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK 208
           E ++  GA+    D  G   +  A ++                     +     + +   
Sbjct: 128 EALVELGADIEVEDERGLTALELAREI-LK-----------TTPKGNPMQFGRRIGLEKV 175

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
                +L       ++           +      G    +    +   +C      +  A
Sbjct: 176 I---NVLEGQVFEYAE--------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG-VHVA 223

Query: 269 DVDVIDTNGCSALFYAVTLGH 289
           +    D      L YAV    
Sbjct: 224 EDVAKD--YEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (258), Expect = 4e-26
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
                   +   DV     +   P   AA      A+  L++   +V+A D++G TAL  
Sbjct: 28  SPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLF 83

Query: 250 AASRGHRECLETLITLCGADVDVIDTN-GCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
            A  G  +C+  L    GAD+D  D   G +AL  A      +    L++ GA    +D 
Sbjct: 84  VAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142

Query: 309 KGRT 312
           +G T
Sbjct: 143 RGLT 146

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.0 bits (224), Expect = 3e-21
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           +    +G    L     G S + +      A+V     +  T    AA +   + L  L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL 65

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK-GRT 312
                DVD +D NG +AL +   LG      LL + GA  + +D + G T
Sbjct: 66  E--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (322), Expect = 3e-36
 Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 46/206 (22%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG 155
            E     L  AA  G++  + +LL +  NVN+Q+  G                 T     
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG----------------RT----- 40

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
                        +       G+             + + LL    + ++ D+ G   I 
Sbjct: 41  ------------ALQVMKL--GN-----------PEIARRLLLRGANPDLKDRTGFAVIH 75

Query: 216 WAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT 275
            AA AG  D +  L++  A+V   D +G   LH AA  GH   +E L+    ++V   + 
Sbjct: 76  DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135

Query: 276 NGCSALFYAVTLGHADATTLLLQYGA 301
            G +A   A   G  +  +L+   GA
Sbjct: 136 KGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  111 bits (281), Expect = 2e-30
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 15/149 (10%)

Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
            G  +  A+   G            L  L  LL +NV+VN  +  GR   L     G+ +
Sbjct: 5   WGNELASAAAR-GD-----------LEQLTSLLQNNVNVNAQNGFGRTA-LQVMKLGNPE 51

Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
               L+  GAN +  D+ G   +H AA  G  + L+TL+    ADV++ D  G   L  A
Sbjct: 52  IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLA 110

Query: 285 VTLGHADATTLLLQYGAT-PNRQDRKGRT 312
              GH      L+++ A+    ++ KG T
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.3 bits (228), Expect = 1e-22
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
           + +     +  AA+ G  + + +L++   NV A +  G TAL      G+ E    L+ L
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-L 58

Query: 266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            GA+ D+ D  G + +  A   G  D    LL++ A  N +D +G  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.4 bits (210), Expect = 4e-20
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
                L  AA +G   ++ ++L +  N V  ++   +T L           A  +L    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGN-PEIARRLLLRGA 61

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           +  +  D  G+  +H AA AG +  + TLL  +A+VN +DNEG+  +H A   G +  +E
Sbjct: 62  N-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 150 TVLSAGAE-PSTPDIHGGYPIHYASQ 174
            ++   A      +  G      A  
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.8 bits (180), Expect = 7e-16
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T+L        +   + +L    N    +DRT   V+H  A    L   +T+LE   
Sbjct: 37  FGRTALQVMKLGNPEI-ARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA-NVNSQDNEGHSVVHWATVCGEVEAL 148
           D +   D +G  PLHLAA  G++ ++  L+ H A NV  ++++G +    A + G  E +
Sbjct: 95  D-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 149 ETVLSAGA 156
             + + GA
Sbjct: 154 SLMQANGA 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  126 bits (319), Expect = 1e-35
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 51/223 (22%)

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
           EV   +      +G     +    G+ P         A+V S+                 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---------------- 44

Query: 146 EALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV 205
              ET                 P   A++                  L  LL    DV+ 
Sbjct: 45  ---ET-----------------PWWTAARK-AD-----------EQALSQLLED-RDVDA 71

Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLIT 264
           VD++GR  +L+ A  GS   +  L +AGA+++  D + GLTALH AA     E +E L+ 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131

Query: 265 LCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
           L GAD++V D  G +AL  A  +         +Q+G     + 
Sbjct: 132 L-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (270), Expect = 2e-28
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
                 +  GH                   +   DV     +   P   AA      A+ 
Sbjct: 17  EYLIEWK-DGH-----------SPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS 61

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN-GCSALFYAVT 286
            L++   +V+A D++G TAL   A  G  +C+  L    GAD+D  D   G +AL  A  
Sbjct: 62  QLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAG 119

Query: 287 LGHADATTLLLQYGATPNRQDRKGRT 312
               +    L++ GA    +D +G T
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLT 145

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 98.7 bits (247), Expect = 3e-25
 Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 50/211 (23%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           EGA   +   + G             + V        T     A          +LE   
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD-VVSEYE---TPWWTAARKADEQALSQLLEDRD 68

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             ++A DE+G T L   A  G+   +  L    A+++ +D  G                 
Sbjct: 69  --VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG----------------- 109

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
                          G   +H A+                  V++ L+    D+ V D+ 
Sbjct: 110 ---------------GLTALHMAAG-YVR-----------PEVVEALVELGADIEVEDER 142

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHD 240
           G   +  A     +      ++ G  +    
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
            +    +G    L     G S + +      A+V     +  T    AA +   + L  L
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQL 63

Query: 263 ITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRK-GRT 312
           +     DVD +D NG +AL +   LG      LL + GA  + +D + G T
Sbjct: 64  LE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  125 bits (316), Expect = 2e-35
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 17/189 (8%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANV---NSQDNEGHSVVHWATVCGEVEALETVLSA 154
             Y  +  AA+ G       L            + N  + V+         +    +++ 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
           GA+  +    G        Q  G+      D+     + K+ L    D+  + K  +  +
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGN------DITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 215 LWAASAGSSDAI-------LALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG 267
                    D         L   ++G  +   DK GLTAL           L+ +     
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY-I 177

Query: 268 ADVDVIDTN 276
              ++ + +
Sbjct: 178 KKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  116 bits (293), Expect = 6e-32
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 21/193 (10%)

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
           S     +  V  A + G  E    +   G E    +      I        +     N+ 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNIL-------YDVLRNNND 51

Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILA------LVKAGANVEAHD 240
                +   L++   D+    K+G          G +D           ++ GA++ A  
Sbjct: 52  EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111

Query: 241 KDGLTALHCAASRGHRECLET------LITLCGADVDVIDTNGCSALFYAVTLGHADATT 294
           K     +         +  E       + +  G  + + D  G +AL +        A  
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 295 LLLQYGATPNRQD 307
           ++  Y    N ++
Sbjct: 172 MMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (259), Expect = 5e-27
 Identities = 25/228 (10%), Positives = 54/228 (23%), Gaps = 55/228 (24%)

Query: 27  NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
           N M    ++  AA  G   +   +         +    +  +L+    N   +  E   +
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRN---NNDEARYK 56

Query: 87  VAPDLIE------AADEDGYTPLHLAA------IAGNVPLIHTLLAHRANVNSQDNEGHS 134
           ++  LI       +  ++G T            I G   L    L   A++ +       
Sbjct: 57  ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116

Query: 135 VVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLK 194
           VV        V+  E +                                           
Sbjct: 117 VVFKNIFNYFVDENEMI--------------------------------------PLYKL 138

Query: 195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKD 242
           +     + + + DK G   + +        A+  +          +  
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 3e-23
 Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 26/153 (16%)

Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAA-----SAGSSDAILALVKA 232
            A+ +G            L     +    +   +  IL+               + L+  
Sbjct: 12  AAAMLGT-----YEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 233 GANVEAHDKDGLTALHCAASRGHR------ECLETLITLCGADVDVIDTNGCSALFYAVT 286
           GA++++  K+G T        G        E  +  +   GAD+  +       +F  + 
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIF 123

Query: 287 LGHADAT-------TLLLQYGATPNRQDRKGRT 312
               D          +  Q G     +D+ G T
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  119 bits (302), Expect = 2e-33
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 49/200 (24%)

Query: 99  GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
               L  AA  G+V  +  LL     + ++ +  G +                       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT----------------------- 38

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                      +       G             A+   LL      NV D  G  P+  A
Sbjct: 39  ----------ALQVMMF--GS-----------TAIALELLKQGASPNVQDTSGTSPVHDA 75

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           A  G  D +  LV+ GA+V   D  G   +H A   GH   +  L     +D+   D  G
Sbjct: 76  ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARG 133

Query: 278 CSALFYAVTLGHADATTLLL 297
            + L  A+  G  D   +L 
Sbjct: 134 LTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  113 bits (285), Expect = 6e-31
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 14/148 (9%)

Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
            G  +  A+   G   E          V ++L    V  + +++ G+   L     GS+ 
Sbjct: 2   AGDRLSGAAAR-GDVQE----------VRRLLHRELVHPDALNRFGKTA-LQVMMFGSTA 49

Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
             L L+K GA+    D  G + +H AA  G  + L+ L+   GADV+V D  G   +  A
Sbjct: 50  IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLA 108

Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
           V  GH    + L    +  +R+D +G T
Sbjct: 109 VQEGHTAVVSFLAA-ESDLHRRDARGLT 135

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.0 bits (248), Expect = 1e-25
 Identities = 49/233 (21%), Positives = 72/233 (30%), Gaps = 81/233 (34%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
               L  AA +G   EV+ +L                                       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHREL-------------------------VH-------- 28

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
             +A +  G T L +    G+  +   LL   A+ N QD  G S VH A   G ++ L+ 
Sbjct: 29  -PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86

Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG 210
           ++  GA+ + PD  G  PIH A Q  GH            AV+  L     D++  D  G
Sbjct: 87  LVEHGADVNVPDGTGALPIHLAVQ-EGH-----------TAVVSFLAAE-SDLHRRDARG 133

Query: 211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
                                             T L  A  RG ++ ++ L 
Sbjct: 134 L---------------------------------TPLELALQRGAQDLVDILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  119 bits (301), Expect = 2e-33
 Identities = 54/199 (27%), Positives = 76/199 (38%), Gaps = 47/199 (23%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
           D    L  AA AG    +  L+A+ A     D  G S                       
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTS----------------------- 36

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                     P+H A+Q  GH            +  +VLL   V  +   K  R P+  A
Sbjct: 37  ----------PLHLAAQ-YGH-----------FSTTEVLLRAGVSRDARTKVDRTPLHMA 74

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNG 277
           AS G ++ +  L+K GA+V A D   +TALH A    H+E +E LI   GADV       
Sbjct: 75  ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFC 133

Query: 278 CSALFYAVTLGHADATTLL 296
            +A   ++  G+ D   +L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (276), Expect = 1e-29
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)

Query: 165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD 224
            G  +  A++  G               +++L+ +       D  G  P+  AA  G   
Sbjct: 2   LGKKLLEAAR-AGQ-----------DDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFS 48

Query: 225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA 284
               L++AG + +A  K   T LH AAS GH   +E L+   GADV+  D    +AL +A
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWA 107

Query: 285 VTLGHADATTLLLQYGATPNRQDRKGRT 312
               H +   LL++YGA  + Q +  +T
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKT 135

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.1 bits (230), Expect = 5e-23
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
           D  + +L AA AG  D +  L+  GA     D  G + LH AA  GH    E L+   G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGV 58

Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             D       + L  A + GHA+   +LL++GA  N +D    T
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT 102

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.1 bits (225), Expect = 2e-22
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +    L+ AA+ G+D EV+ IL +   A    D    + LH  A+    S  E +L    
Sbjct: 1   DLGKKLLEAARAGQDDEVR-ILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
              +A  +   TPLH+AA  G+  ++  LL H A+VN++D    + +HWAT     E +E
Sbjct: 59  S-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQ 174
            ++  GA+  T           +  
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISID 142

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.3 bits (184), Expect = 2e-16
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G + L  AAQ G  +  + +L +  +    R +  +T LH  A     +  E +L+   
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D + A D    T LH A    +  ++  L+ + A+V++Q     +    +   G  +  E
Sbjct: 92  D-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  118 bits (299), Expect = 6e-33
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 14/169 (8%)

Query: 96  DEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
           + +    L  AA AG+V  +  L      N    +    + +H+A     V  +E +L  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
           GA+    D  G  P+H A    GH             V ++L+ H   VNV D     P+
Sbjct: 65  GADVHAKDKGGLVPLHNACS-YGH-----------YEVAELLVKHGAVVNVADLWKFTPL 112

Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
             AA+ G  +    L++ GA+    ++DG T L      G  +  + L 
Sbjct: 113 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (285), Expect = 7e-31
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 14/152 (9%)

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL-HHNVDVNVVDKDGRQPILWAASA 220
           +      +  A++  G            +  +K L    +V+   ++     P+ +AA  
Sbjct: 5   NSEADRQLLEAAK-AGD-----------VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY 52

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
                +  L++ GA+V A DK GL  LH A S GH E  E L+   GA V+V D    + 
Sbjct: 53  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTP 111

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L  A   G  +   LLLQ+GA P +++R G T
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.4 bits (223), Expect = 6e-22
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNA-VRERDRTRKTVLHYCAENTILSCAETILEVA 88
           E    L+ AA+ G    VK  L +  +   R+ +  + T LH+ A    +S  E +L+  
Sbjct: 7   EADRQLLEAAKAGDVETVK-KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
            D + A D+ G  PLH A   G+  +   L+ H A VN  D    + +H A   G+ E  
Sbjct: 66  AD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYAS 173
           + +L  GA+P+  +  G  P+    
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 233 GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA 292
           GA     + +    L  AA  G  E ++ L T+   +   I+    + L +A        
Sbjct: 1   GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 293 TTLLLQYGATPNRQDRKGRT 312
              LLQ+GA  + +D+ G  
Sbjct: 58  VEYLLQHGADVHAKDKGGLV 77

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  116 bits (293), Expect = 4e-32
 Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 19/165 (11%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           ++ E     L  AA  G V  +  LL   AN N+ ++ G   +    + G     E +L 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLL 65

Query: 154 AGAEPSTPDIHGG-YPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
            GAEP+  D      P+H A++  G            L  L VL      ++V D  GR 
Sbjct: 66  HGAEPNCADPATLTRPVHDAARE-GF-----------LDTLVVLHRAGARLDVRDAWGRL 113

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE 257
           P+  A   G  D    L  A       +          A+ G  +
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNH-----ARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  110 bits (278), Expect = 6e-30
 Identities = 36/162 (22%), Positives = 53/162 (32%), Gaps = 17/162 (10%)

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
           +   A  S         +  A+   G            +  ++ LL    + N  +  GR
Sbjct: 1   MEPAAGSSMEP--SADWLATAAAR-GR-----------VEEVRALLEAGANPNAPNSYGR 46

Query: 212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADV 270
           +P +     GS+     L+  GA     D   LT  +H AA  G  + L  L    GA +
Sbjct: 47  RP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARL 104

Query: 271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           DV D  G   +  A  LGH D    L          +     
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 8/106 (7%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASR---PNAVRERDRTRKTVLHYCAENTILSCAETILE 86
            G   +           V  +L      PN       T    +H  A    L     +  
Sbjct: 44  YGRRPIQVMMMGSA--RVAELLLLHGAEPNCADPATLT--RPVHDAAREGFLDTLVVLHR 99

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                ++  D  G  P+ LA   G+  +   L A        ++  
Sbjct: 100 AGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  113 bits (286), Expect = 2e-31
 Identities = 37/179 (20%), Positives = 54/179 (30%), Gaps = 48/179 (26%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
           I          L  AA  G V  +  LL   A+ N+ +  G                   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRR----------------- 47

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR 211
                           PI       G              V ++LL H  + N  D    
Sbjct: 48  ----------------PIQVMMM--GS-----------AQVAELLLLHGAEPNCADPATL 78

Query: 212 -QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
            +P+  AA  G  D ++ L +AGA ++  D  G   +  A  +GHR+    L      D
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  110 bits (278), Expect = 3e-30
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
                          +  A+   G            +  ++ LL    D N +++ GR+P
Sbjct: 1   GSPGIHMLGGSSDAGLATAAAR-GQ-----------VETVRQLLEAGADPNALNRFGRRP 48

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLT-ALHCAASRGHRECLETLITLCGADVDV 272
            +     GS+     L+  GA     D   LT  +H AA  G  + L  L    GA +DV
Sbjct: 49  -IQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDV 106

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGA 301
            D  G   +  A   GH D    L     
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  103 bits (260), Expect = 1e-27
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET 261
            ++++       +  AA+ G  + +  L++AGA+  A ++ G   +      G  +  E 
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 262 LITLCGADVDVIDTNGC-SALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           L+   GA+ +  D       +  A   G  D   +L + GA  +  D  GR 
Sbjct: 63  LLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.0 bits (214), Expect = 5e-21
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
               +          L  AA+RG  E +  L+   GAD + ++  G   +   + +G A 
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMM-MGSAQ 58

Query: 292 ATTLLLQYGATPNRQDRKGRTY 313
              LLL +GA PN  D    T 
Sbjct: 59  VAELLLLHGAEPNCADPATLTR 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
                L  AA +G+   V+ +L +  +     +R  +  +      +    AE +L    
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMGS-AQVAELLLLHGA 68

Query: 90  DLIEAADEDGYT-PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
           +    AD    T P+H AA  G +  +  L    A ++  D  G   V  A   G  +  
Sbjct: 69  E-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 149 ETVLSAGA 156
             + +A  
Sbjct: 128 RYLHAATG 135

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  109 bits (275), Expect = 7e-30
 Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 13/134 (9%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
           P+H A++  GH           L V+K+LL    DVN  DK+GR P+  AA  G  + + 
Sbjct: 5   PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
            L++AGA+V A DK+G T LH AA  GH E ++ L+   GADV+  D NG + L  A   
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 111

Query: 288 GHADATTLLLQYGA 301
           GH +   LLL+ GA
Sbjct: 112 GHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  107 bits (271), Expect = 3e-29
 Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 45/166 (27%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
           +G TPLHLAA  G++ ++  LL   A+VN++D  G +                       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                     P+H A++  GH           L V+K+LL    DVN  DK+GR P+  A
Sbjct: 38  ----------PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLA 75

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           A  G  + +  L++AGA+V A DK+G T LH AA  GH E ++ L+
Sbjct: 76  ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 98.6 bits (247), Expect = 9e-26
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
           +GR P+  AA  G  + +  L++AGA+V A DK+G T LH AA  GH E ++ L+   GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59

Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           DV+  D NG + L  A   GH +   LLL+ GA  N +D+ GRT
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 2e-19
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           G T L  AA+ G    VK +L +  + V  +D+  +T LH  A N  L   + +LE   D
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
            + A D++G TPLHLAA  G++ ++  LL   A+VN++D  G + +H A   G +E ++ 
Sbjct: 61  -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 151 VLSAGA 156
           +L AGA
Sbjct: 120 LLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 13/134 (9%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
           +T LH  A N  L   + +LE   D + A D++G TPLHLAA  G++ ++  LL   A+V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
           N++D  G + +H A   G +E ++ +L AGA+ +  D +G  P+H A++  GH       
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GH------- 113

Query: 186 VRVGLAVLKVLLHH 199
               L V+K+LL  
Sbjct: 114 ----LEVVKLLLEA 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (278), Expect = 6e-29
 Identities = 40/295 (13%), Positives = 75/295 (25%), Gaps = 73/295 (24%)

Query: 33  TSLMYAAQQGKDAEVKAIL-------ASRPNAVRERDRTRKTVLHYCAENTILSCAETI- 84
             L     +G   E+  +L           ++      T KT L     N        I 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 85  --LEVAPDL----------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
             L++  D                  G++ LH+A    ++  +  L+ + A+V+ +    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
               H                      T    G  P+  A+                  V
Sbjct: 124 FFQKH--------------------QGTCFYFGELPLSLAAC-TKQ-----------WDV 151

Query: 193 LKVLLHHNV---DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
           +  LL +      +   D  G   +                     + A +    +AL  
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALV-----------------MIADNSPENSALVI 194

Query: 250 AASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
               G  +    L        ++ +  G + L  A   G  +    +LQ   +  
Sbjct: 195 HMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 57/236 (24%)

Query: 31  GATSLMYAA---QQGKDAEVKAILASRPNA----------VRERDRTRKTVLHYCAENTI 77
           G T LM A    Q G +A +  +L    ++            +      + LH   E   
Sbjct: 43  GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

Query: 78  LSCAETILE------------VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH---R 122
           L C + ++E                        G  PL LAA      ++  LL +    
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162

Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
           A++ + D+ G++V+H   +  +     +                  +       G     
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENS-----------------ALVIHMYD-GL---- 200

Query: 183 GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
                  L +   L        + +  G  P+  AA  G  +    +++   +  A
Sbjct: 201 -------LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.0 bits (161), Expect = 9e-13
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 20/139 (14%)

Query: 31  GATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
           G   L  AA   +   V  +L    +P ++   D    TVLH                  
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI------------- 182

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
                A +    + L +    G + +   L          +++G + +  A   G++E  
Sbjct: 183 -----ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 149 ETVLSAGAEPSTPDIHGGY 167
             +L      +    H  +
Sbjct: 238 RHILQREFSGAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 21/124 (16%)

Query: 210 GRQPILWAASAGSSDAILALVK--------AGANVEAHDKDGLTALHCAA---SRGHREC 258
            R  +    S G  + +  L++           +       G T L  A      G   C
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 259 LETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
           +  L+           L  A        G SAL  A+         LL++ GA  + +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 309 KGRT 312
               
Sbjct: 122 GRFF 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (266), Expect = 2e-28
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 45/170 (26%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
             +  G T LH+A+I G++P +  LL + ++ N +D+ G +                   
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWT------------------- 45

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
                         P+H A    GH           L V+++LL H   VN        P
Sbjct: 46  --------------PLHEACN-HGH-----------LKVVELLLQHKALVNTTGYQNDSP 79

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           +  AA  G  D +  L+  GA+  A +  GL  +        +  L    
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  103 bits (259), Expect = 2e-27
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
           G +P T +  G   +H AS   G            +  ++ LL +  D NV D  G  P+
Sbjct: 1   GIDPFT-NHRGETLLHIASIK-GD-----------IPSVEYLLQNGSDPNVKDHAGWTPL 47

Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVID 274
             A + G    +  L++  A V        + LH AA  GH + ++ L++  GA  + ++
Sbjct: 48  HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVN 106

Query: 275 TNGCSALFYAVTLGHADATTLLLQYGA 301
             G   + Y           L  +  +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 5e-27
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 201 VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
           +D    +  G   +  A+  G   ++  L++ G++    D  G T LH A + GH + +E
Sbjct: 2   IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            L+    A V+       S L  A   GH D   LLL YGA+ N  +  G  
Sbjct: 61  LLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.5 bits (200), Expect = 7e-19
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 46/170 (27%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
           +T+LH  +    +   E +L+   D     D  G+TPLH A   G++ ++  LL H+A V
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND 185
           N+   +  S                                 P+H A++  GH       
Sbjct: 70  NTTGYQNDS---------------------------------PLHDAAK-NGH------- 88

Query: 186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN 235
               + ++K+LL +    N V+  G +P+ +         +L   K  ++
Sbjct: 89  ----VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.2 bits (194), Expect = 4e-18
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           G T L  A+ +G    V+ +L +  +    +D    T LH    +  L   E +L+    
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
            +        +PLH AA  G+V ++  LL++ A+ N+ +  G   V +         L  
Sbjct: 69  -VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127

Query: 151 VLSAGA 156
                +
Sbjct: 128 PEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
           G T L  A   G    V+ +L  +   V        + LH  A+N  +   + +L     
Sbjct: 43  GWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS 127
              A +  G  P+          L+     + ++  S
Sbjct: 102 -RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (264), Expect = 3e-28
 Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 45/167 (26%)

Query: 94  AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
                       A   G++  +   +A   +VN     G                     
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK------------------- 42

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
                         P+HYA+  CG            L +L+ LL    D+N  DK    P
Sbjct: 43  --------------PLHYAAD-CGQ-----------LEILEFLLLKGADINAPDKHHITP 76

Query: 214 ILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE 260
           +L A   G    +  L+  GA+      DGLTA     ++  +  L+
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  103 bits (260), Expect = 9e-28
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
              +A +  G            L  +K  +    DVN   + GR+P+ +AA  G  + + 
Sbjct: 10  EFMWALK-NGD-----------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE 57

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
            L+  GA++ A DK  +T L  A   GH  C++ L++  GAD  V   +G +A       
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQ 116

Query: 288 GHAD 291
               
Sbjct: 117 AIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  103 bits (260), Expect = 1e-27
 Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 206 VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
           +     +  +WA   G  D +   V  G +V    + G   LH AA  G  E LE L+  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY 313
            GAD++  D +  + L  AV  GH     LLL  GA    +   G T 
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)

Query: 67  TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
               +  +N  L   +  +    D +    E G  PLH AA  G + ++  LL   A++N
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
           + D    + +  A   G V  ++ +LS GA+ +     G         
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
                M+A + G   EVK  +A   + V       +  LHY A+   L   E +L    D
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
            I A D+   TPL  A   G+V  +  LL+  A+   +  +G +             L+
Sbjct: 66  -INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  108 bits (271), Expect = 8e-28
 Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 78/298 (26%)

Query: 33  TSLMYAAQQGKDAEVKAILA------SRPNAVRERDR-TRKTVLHYCAENTILSCAETI- 84
            S+  A  Q    E++++L        R      +D  T KT L     N      +TI 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 85  --------LEVAPDLIEA----ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
                    +     + A    +   G T LH+A    N+ L+  L+ + A+V +  N  
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
                                   +       G  P+  A+                LA+
Sbjct: 135 -------------------FFKKTKGRPGFYFGELPLSLAAC-TNQ-----------LAI 163

Query: 193 LKVLLHH---NVDVNVVDKDGRQPILWAASAGSSDAILA----------------LVKAG 233
           +K LL +     D++  D  G   +        +                     L    
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 234 ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
              E  ++ GLT L  AAS G    L  ++          + +       A    H  
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 21/132 (15%)

Query: 202 DVNVVDKDGRQPILWAASAGSSDAILALV-------KAGANVEAHDKD-GLTALHCA--- 250
                    R+ I  A +  +   + +L+       K   + E  D + G T L  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 251 ASRGHRECLETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
              G  + +  L+              A        G +AL  A+   +    TLL++ G
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 301 ATPNRQDRKGRT 312
           A           
Sbjct: 125 ADVQAAANGDFF 136

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 31  GATSLMYAAQQGKDAEVKAILA--SRPNAVRERDRTRKTVLHYCAEN---------TILS 79
           G   L  AA   + A VK +L    +P  +  RD    TVLH   E           + S
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 80  CAETILEVAPDLI------EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
               IL +   L       E  +  G TPL LAA +G + ++  +L    +  
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 232 AGANVEAHDKDGLTALHCAASRGHRECLETLITL------CGADVDVIDT-NGCSALFYA 284
             A  +        ++  A ++ + + LE+L+           D +  D   G + L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 285 V---TLGHADATTLLLQYGATPNRQDR 308
           +     G  D   LLL      +   +
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQ 88

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 98.6 bits (247), Expect = 6e-26
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
               KDG  P+  AA  G ++ +  L+  GA+V A  KDG T LH AA  GH E ++ L+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 264 TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              GADV+    +G +    A   GH +   LL   GA  N +      
Sbjct: 63  A-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH 110

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.9 bits (240), Expect = 5e-25
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
           P+H A++  GH              +K LL    DVN   KDG  P+  AA  G ++ + 
Sbjct: 12  PLHNAAK-NGH-----------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY 283
            L+  GA+V A  KDG T  H A   GH E ++ L    GADV+           +
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.1 bits (225), Expect = 9e-23
 Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 45/154 (29%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
             +DG TPLH AA  G+   +  LL+  A+VN++  +G++                    
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT-------------------- 44

Query: 155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPI 214
                        P+H A++  GH             ++K+LL    DVN   KDG  P 
Sbjct: 45  -------------PLHLAAKN-GH-----------AEIVKLLLAKGADVNARSKDGNTPE 79

Query: 215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
             A   G  + +  L   GA+V A         H
Sbjct: 80  HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.3 bits (189), Expect = 1e-17
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
            T LH  A+N      + +L    D + A  +DG TPLHLAA  G+  ++  LLA  A+V
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY 171
           N++  +G++  H A   G  E ++ + + GA+ +       +  H+
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 27  NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE 86
            + +G T L  AA+ G   EVK +L+   + V  R +   T LH  A+N      + +L 
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 87  VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH 137
              D + A  +DG TP HLA   G+  ++  L A  A+VN++        H
Sbjct: 64  KGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 97.8 bits (245), Expect = 2e-25
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
           D    L  AA AG    +  L+A+ A+VN++D  G +                       
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLT----------------------- 49

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                     P++ A+   GH           L +++VLL +  DVN VD  G  P+  A
Sbjct: 50  ----------PLYLATA-HGH-----------LEIVEVLLKNGADVNAVDAIGFTPLHLA 87

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           A  G  +    L+K GA+V A DK G TA   +   G+ +  E L 
Sbjct: 88  AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 97.5 bits (244), Expect = 3e-25
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
            +  A++  G               +++L+ +  DVN  D+ G  P+  A + G  + + 
Sbjct: 17  KLLEAAR-AGQ-----------DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTL 287
            L+K GA+V A D  G T LH AA  GH E  E L+   GADV+  D  G +A   ++  
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGN 123

Query: 288 GHADATTLLLQY 299
           G+ D   +L + 
Sbjct: 124 GNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.5 bits (239), Expect = 2e-24
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 8/119 (6%)

Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR 253
               HH  D+        + +L AA AG  D +  L+  GA+V A D+ GLT L+ A + 
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           GH E +E L+   GADV+ +D  G + L  A  +GH +   +LL++GA  N QD+ G+T
Sbjct: 58  GHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 67  TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
             L   A          ++    D + A DE G TPL+LA   G++ ++  LL + A+VN
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
           + D  G + +H A   G +E  E +L  GA+ +  D  G      +    G+        
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG-NGN-------- 125

Query: 187 RVGLAVLKVLLHHN 200
                + ++L   N
Sbjct: 126 ---EDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 75.1 bits (186), Expect = 6e-17
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
           H+  +    L+ AA+ G+D EV+ ++A+  + V  +D    T L+    +  L   E +L
Sbjct: 9   HHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLL 67

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
           +   D + A D  G+TPLHLAA  G++ +   LL H A+VN+QD  G +    +   G  
Sbjct: 68  KNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 146 EALETVLS 153
           +  E +  
Sbjct: 127 DLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L  A   G    V+ +L +  + V   D    T LH  A    L  AE +L+   
Sbjct: 46  YGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
           D + A D+ G T   ++   GN  L   L   
Sbjct: 105 D-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (250), Expect = 3e-24
 Identities = 51/348 (14%), Positives = 94/348 (27%), Gaps = 59/348 (16%)

Query: 1   MVDVISIFLSKPNLVWENGSFDKKVH------NTMEGATSLMYAAQQGKDAEVKAILASR 54
             ++   F+S   L     S+ + +H        ME    L+       +   K + +  
Sbjct: 26  WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD- 84

Query: 55  PNAVRERDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN 111
                ++    + +    A     + L     +L      ++    + Y    LAA  G+
Sbjct: 85  ---AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGH 140

Query: 112 VPLIHTLLAHRANVNSQD--NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIH--GGY 167
           + +++ L              E +     A   G +  L  +       +T  I     Y
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ--------------- 212
              +A+   GH             V+  LL   V +   +    +               
Sbjct: 201 AFRWAAVGRGH-----------HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 249

Query: 213 ---PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL---- 265
               +  A    + D +  LV            G   L     R     L+ +  L    
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSE-----CLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 266 ---CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
                A    I  +    L  A+ LG+  A  LLL   +         
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 27/130 (20%), Positives = 38/130 (29%), Gaps = 6/130 (4%)

Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK--DGLTA 246
            L  L +LL  +  V V+  +  Q    AA  G    +  L +            +   A
Sbjct: 107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166

Query: 247 LHCAASRGHRECLETLITLCGADVDVIDT---NGCSALFYAVTLGHADATTLLLQYGATP 303
              AA  GH   L  L  L             N  +  + AV  GH +    LL      
Sbjct: 167 FRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 304 NRQDRKGRTY 313
              +     Y
Sbjct: 226 AYAEIHEFEY 235

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 6/115 (5%)

Query: 202 DVNVVDKDGRQPILWAASAGSS---DAILALVKAGANVEAHDKDGLTALHCAASRGHREC 258
           D +            AA  G S   D +  L+ +   V+    +   A   AA  GH   
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143

Query: 259 LETLITLCGADVDVID--TNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR 311
           L  L         +         A   A   GH      L +   T      +  
Sbjct: 144 LNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.7 bits (224), Expect = 8e-23
 Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGA 268
           +GR P+  AA  G  + +  L++AGA+V A DK+G T LH AA  GH E ++ L+   GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59

Query: 269 DVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           DV+  D NG + L  A   GH +   LLL+ GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.1 bits (212), Expect = 4e-21
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 12/96 (12%)

Query: 168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL 227
           P+H A++  GH           L V+K+LL    DVN  DK+GR P+  AA  G  + + 
Sbjct: 5   PLHLAAR-NGH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52

Query: 228 ALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
            L++AGA+V A DK+G T LH AA  GH E ++ L+
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           +G T LH AA  GH E ++ L+   GADV+  D NG + L  A   GH +   LLL+ GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 302 TPNRQDRKGRT 312
             N +D+ GRT
Sbjct: 60  DVNAKDKNGRT 70

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 3e-14
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 45/137 (32%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
           +G TPLHLAA  G++ ++  LL   A+VN++D  G +                       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                     P+H A++  GH           L V+K+LL    DVN  DK+GR P+  A
Sbjct: 38  ----------PLHLAARN-GH-----------LEVVKLLLEAGADVNAKDKNGRTPLHLA 75

Query: 218 ASAGSSDAILALVKAGA 234
           A  G  + +  L++AGA
Sbjct: 76  ARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 5e-14
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
           +T LH  A N  L   + +LE   D + A D++G TPLHLAA  G++ ++  LL   A+V
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 126 NSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
           N++D  G + +H A   G +E ++ +L AGA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.9 bits (224), Expect = 9e-23
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 179 ASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA 238
            S   +           L+     +     D  + +L AA AG  D +  L+  GA+V A
Sbjct: 1   GSSHHH-----HHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAA 52

Query: 239 HDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
            DK+G T LH AA  GH E ++ L+   GADV   D  G +A   ++  G+ D   +L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN 276
            +S         LV  G+++     D    L  AA  G  + +  L+   GADV   D N
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKN 56

Query: 277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           G + L  A   GH +   LLL+ GA    QD+ G+T
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.4 bits (168), Expect = 8e-15
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 85  LEVAPDLIEA-AD--EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATV 141
              +  L+   +    D    L  AA AG    +  L+A+ A+V ++D  G + +H A  
Sbjct: 7   HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66

Query: 142 CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ 174
            G +E ++ +L AGA+    D  G      +  
Sbjct: 67  NGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 48/157 (30%)

Query: 106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG 165
            +   +      L+   +++ S                                      
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD------------------------------------L 24

Query: 166 GYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA 225
           G  +  A++  G               +++L+ +  DV   DK+G  P+  AA  G  + 
Sbjct: 25  GKKLLEAAR-AGQ-----------DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 72

Query: 226 ILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
           +  L++AGA+V A DK G TA   +   G+ +  E L
Sbjct: 73  VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANV 125
              L   A          ++    D + A D++G TPLHLAA  G++ ++  LL   A+V
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 126 NSQDNEGHSVVHWATVCGEVEALE 149
            +QD  G +    +   G  +  E
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
               L+ AA+ G+D EV+ ++A+  + V  +D+   T LH  A N  L   + +LE   D
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTL 118
            + A D+ G T   ++   GN  L   L
Sbjct: 83  -VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 38/278 (13%), Positives = 67/278 (24%), Gaps = 70/278 (25%)

Query: 33  TSLMYAAQQGKDAEVKAIL-------ASRPNAVRERDRTRKTVLHYCAENT---ILSCAE 82
             L     +G    ++ +L           +       T KT L     N          
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 83  TILEVAPDL----------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
            +L++A                    G T LH+A        +  L+   A+V++Q    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
                                           G  P+  A+                  +
Sbjct: 127 FFQPKDEGGYFY-------------------FGELPLSLAAC-TNQ-----------PHI 155

Query: 193 LKVLLHH---NVDVNVVDKDGRQPILWAASAGSSDAILA---------LVKAGANVEA-- 238
           +  L  +     D+   D  G   +    +   +              L+   A +    
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 239 -----HDKDGLTALHCAASRGHRECLETLITLCGADVD 271
                 + DGL+ L  AA  G     + +I    AD  
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 39/289 (13%), Positives = 71/289 (24%), Gaps = 79/289 (27%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIE----------AADEDGYTPLHLAA 107
           ++  +R     L            + +  +   L+                G T L  A 
Sbjct: 1   MKVFNRPI---LFDIVSR---GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL 54

Query: 108 I---AGNVPLIHTLLAHR-----------ANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           +   AG    I  LL              +        G + +H A        +E ++ 
Sbjct: 55  LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
            GA+         +                                  D       G  P
Sbjct: 115 KGADVHAQARGRFFQPK-------------------------------DEGGYFYFGELP 143

Query: 214 ILWAASAGSSDAILALVKAG---ANVEAHDKDGLTALHCAASRGHRECLET--------L 262
           +  AA       +  L + G   A++   D  G T LH   +        T        L
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 263 ITLCGADVD-------VIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
           + +  A +        +++ +G S L  A   G       +++      
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 36/164 (21%), Positives = 49/164 (29%), Gaps = 36/164 (21%)

Query: 184 NDVRVGLAVLKVLLHHNVDVNVVD----KDGRQPILWAA---SAGSSDAILALVKAG--- 233
                   +L  LL H   +   +      G+  +  A    SAG +D I  L+      
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 234 --------ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN--------- 276
                   +        G TALH A  R  +  +E L+   GADV               
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEG 134

Query: 277 -----GCSALFYAVTLGHADATTLLLQYG---ATPNRQDRKGRT 312
                G   L  A           L + G   A   RQD +G T
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT 178

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 210 GRQPILWAASAGSSDAILALVK----AGANVEAHD----KDGLTALHCAA---SRGHREC 258
            R  +    S GS D +  L+         +   +      G T L  A    S G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 259 LETLI----------TLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
           +  L+              +    +   G +AL  A+         LL++ GA  + Q R
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 309 KGRT 312
               
Sbjct: 125 GRFF 128

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 33/170 (19%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTR--------------KTVLHYCAEN 75
            G T+L  A ++     V+ ++    + V  + R R              +  L   A  
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150

Query: 76  TILSCAETILEVAPDL--IEAADEDGYTPLHLAAIAGN---------VPLIHTLLAHRAN 124
                   + E       +   D  G T LH      +           +   LL   A 
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210

Query: 125 VNS-------QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY 167
           +          +N+G S +  A   G++   + ++      +    H  +
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.4 bits (187), Expect = 8e-16
 Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 190 LAVLKVLLHHNVDVNVV--DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL 247
           L  +   L H  DVN V   +D   P++ A +A S  A   L++ GANV   D  G   L
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272

Query: 248 HCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
           H A   GH       +   GAD+   D+ G   L  A+   +AD  TLL  
Sbjct: 273 HHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 25/81 (30%), Positives = 35/81 (43%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
             +D  TPL  A  A ++     LL + ANVN  D+ G   +H AT+ G        L  
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 155 GAEPSTPDIHGGYPIHYASQM 175
           GA+    D  G  P+  A + 
Sbjct: 291 GADLGARDSEGRDPLTIAMET 311

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.0 bits (147), Expect = 1e-10
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEA--HDKDGLTALHCAASRGHRECLETLITLC 266
            G      +    S   +   +  GA+V      +D  T L  A +       E L+   
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QN 257

Query: 267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           GA+V+  D+ G   L +A  LGH     L L+ GA    +D +GR 
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD 303

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 6e-10
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ--DNEGHSVVHWATVCGEVEALETVLSAG 155
            G      +    ++P +   LAH A+VN      +  + +  AT    + A E +L  G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258

Query: 156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPIL 215
           A  +  D  G  P+H+A+   GH             +  + L    D+   D +GR P+ 
Sbjct: 259 ANVNQADSAGRGPLHHATI-LGHT-----------GLACLFLKRGADLGARDSEGRDPLT 306

Query: 216 WAASAGSSDAILALVKAGAN 235
            A    ++D +  L  A   
Sbjct: 307 IAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 62  DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH 121
            +   T L        L   E +L+   + +  AD  G  PLH A I G+  L    L  
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 122 RANVNSQDNEGHSVVHWATVCGEVEALETVLSA 154
            A++ ++D+EG   +  A      + +  +  A
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
              +  A    ++ ++    + G +   P             +   A ++ N   + L  
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL-HLAVKVANQASLPLVD 210

Query: 193 LKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
              ++ +   ++    DG   + +AA     D +  L+K  A V   ++ G TAL  A  
Sbjct: 211 F--IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 253 RGHRECLETLITLCGAD 269
           + H+EC E L+    A 
Sbjct: 269 KHHKEC-EELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 190 LAVLKVLLHHNVDVN------VVDKDGRQPILWAASAGSSDAILA---LVKAGANVEAHD 240
           L  +     +  D                 +  A    +  ++     +++ G +++A  
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223

Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
            DG TALH AA     +CL+ L+    A V  ++  G +AL  A    H +   LL Q
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 8/114 (7%)

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDK------DGLTALHCAASRGHRECLE 260
                Q +  A       ++L     G +                 LH A    ++  L 
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207

Query: 261 T--LITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               I   G  +D    +G +AL YA      D   LLL+  A     +  G T
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 88  APDLIEAADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVNSQDNEGHSVVHWATVCGE 144
            P     A       LHLA    N   +     ++ +  +++++  +G++ +H+A +  +
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

Query: 145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
            + L+ +L   A   T +  G   +  A +   H  
Sbjct: 239 PDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%)

Query: 92  IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
           ++A   DG T LH AA+      +  LL  RA V + +  G + +  A      E  E +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

Query: 152 LSAGAEPSTPDIH 164
             A A      +H
Sbjct: 279 EQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 9/123 (7%)

Query: 17  ENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAI--LASRPNAVRERDRTRKTVLHYCAE 74
           + G               L  A +    A +  +  +      +  +     T LHY A 
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235

Query: 75  NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS 134
                C + +L+     +   +E G T L +A    +      LL       +Q      
Sbjct: 236 YNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHK-ECEELL-----EQAQAGTFAF 288

Query: 135 VVH 137
            +H
Sbjct: 289 PLH 291

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 193 LKVLLHHNVDVN------VVDKDGRQPILWAASAGSSDAILA---LVKAGANVEAHDKDG 243
           L       VD+          +     +  A  +    ++     LV+   N++     G
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205

Query: 244 LTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
            TALH      + ECL+ L+    A +++ + +G + L  A  L H     LL Q 
Sbjct: 206 STALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHT---LLAHRANVNSQDNEGHSVVHWATVCGEVEALETV 151
             E   T LHLA  + +   +H    L+ +  N++ Q  +G + +H+  +    E L+ +
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 152 LSAGAEPSTPDIHGGYPIHYASQMCGHA 179
           L   A     +  G  P+  A ++  H 
Sbjct: 225 LRGKASIEIANESGETPLDIAKRL-KHE 251

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.6 bits (157), Expect = 4e-12
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE 237
            A    +   + +     L+ ++ +++     G   + +     +++ +  L++  A++E
Sbjct: 175 LAVRSVDRTSLHIVDF--LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 238 AHDKDGLTALHCAASRGHRECLETLI 263
             ++ G T L  A    H  C E L 
Sbjct: 233 IANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDK------DGLTALHCAASRGHRECLE 260
                  +  A        +L     G ++              TALH A     R  L 
Sbjct: 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186

Query: 261 TLITLC--GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            +  L     ++D     G +AL Y     +A+   LLL+  A+    +  G T
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 240

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 53  SRPNAVRERDRTRKTVLHY---CAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA 109
           +    +       +T LH      + T L   + +++ + + ++     G T LH   + 
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT 215

Query: 110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYP 168
            N   +  LL  +A++   +  G + +  A         E +  A +      +H  Y 
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 19  GSFDKKVHNTMEGATSLMYAAQQGKDAEVKAI--LASRPNAVRERDRTRKTVLHYCAENT 76
                  +      T+L  A +      +  +  L      + ++     T LHYC    
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216

Query: 77  ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN 124
              C + +L      IE A+E G TPL +A    +      L    + 
Sbjct: 217 NAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 139 ATVCGEVEALETVLSAGAEPSTP------DIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
           A    ++ ++    + G +   P             +H A ++   AS         L +
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---------LPL 189

Query: 193 LKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAAS 252
           +  ++ +   ++    DG   + +AA     D +  L+K  A V   ++ G TAL  A  
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249

Query: 253 RGHRECLETL 262
           + H+EC E L
Sbjct: 250 KHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 57  AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA---GNVP 113
           A+  RD    +VL   A               P     A       LHLA       ++P
Sbjct: 139 AICNRDL--LSVLEAFANGQDFGQ--------PLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           L+  ++ +  +++++  +G++ +H+A +  + + L+ +L   A   T +  G   +  A 
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

Query: 174 QMCGHASE 181
           +      E
Sbjct: 249 KKHHKECE 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 54/311 (17%), Positives = 95/311 (30%), Gaps = 86/311 (27%)

Query: 3   DVISIFLSKPNLVWENGSFD-KKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRER 61
           D++S+F      V     FD K V +  +   S           E+  I+ S  +AV   
Sbjct: 20  DILSVFE--DAFVDN---FDCKDVQDMPKSILS---------KEEIDHIIMS-KDAVSGT 64

Query: 62  DRTRKTVLHYCAENTILSCAETILEV--------------APDLIEAADEDGYTPLH--- 104
            R   T+L    E  +    E +L +               P ++     +    L+   
Sbjct: 65  LRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE-VEALETVLSAGAEPSTPDI 163
                 NV  +   L  R  +       + ++      G+   AL+  LS   +      
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF- 182

Query: 164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVL--LHHNVDVNVVDKDGRQPILWAASAG 221
                I + +        + N       VL++L  L + +D N           W + + 
Sbjct: 183 ----KIFWLN--------LKNCNSPE-TVLEMLQKLLYQIDPN-----------WTSRSD 218

Query: 222 SSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADV---DVIDT-- 275
            S  I         +  H  +  L  L    S+ +  CL  L+ L   +V      +   
Sbjct: 219 HSSNI--------KLRIHSIQAELRRL--LKSKPYENCL--LV-L--LNVQNAKAWNAFN 263

Query: 276 NGCSALFYAVT 286
             C  L   +T
Sbjct: 264 LSCKIL---LT 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 86/294 (29%)

Query: 15  VWENGSFDKKVHNTME-GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCA 73
           V      + K  N        L+      +  +V   L++        D    T+     
Sbjct: 253 VQ-----NAKAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 74  ENTILSCAETILEVAPDL-IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEG 132
           ++ +L   +   +   DL  E    +   P  L+ IA ++         R  + + DN  
Sbjct: 304 KSLLLKYLDCRPQ---DLPREVLTTN---PRRLSIIAESI---------RDGLATWDN-- 346

Query: 133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV 192
                W  V    + L T++ +      P  +      +                  L+V
Sbjct: 347 -----WKHV--NCDKLTTIIESSLNVLEPAEYRKM---FDR----------------LSV 380

Query: 193 LKVLLHHNVDVNVVDKDGRQP-----ILWAASAGSSDAILA--LVKAGANVEAHDKDGLT 245
                      ++       P     ++W     S   ++   L K    VE   K+   
Sbjct: 381 F------PPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTI 426

Query: 246 ALH---------CAASRG-HRECLETLITLCGADVDVIDTNGCSALFYAVTLGH 289
           ++                 HR  ++        D D +        FY+  +GH
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.98
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-53  Score=366.78  Aligned_cols=305  Identities=27%  Similarity=0.357  Sum_probs=230.0

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHH
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA   81 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   81 (321)
                      ++++++|++.+...        + ..+.+|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++
T Consensus        60 ~~~v~~Ll~~g~~~--------~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v  129 (437)
T 1n11_A           60 TEVAKYLLQNKAKV--------N-AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV  129 (437)
T ss_dssp             HHHHHHHHHHTCCS--------S-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhCCCCC--------C-CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHH
Confidence            35667777653221        1 1234477778888887877777777777654 566666777777777777777777


Q ss_pred             HHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q psy138           82 ETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP  161 (321)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~  161 (321)
                      ++|++++.. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|.+++..
T Consensus       130 ~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  208 (437)
T 1n11_A          130 LALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP  208 (437)
T ss_dssp             HHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC
T ss_pred             HHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc
Confidence            777776655 3455566667777777777777777777766666666666666666666666666666666666666666


Q ss_pred             CCCCCchhhhHhhhccccc---------------cc------ccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc
Q psy138          162 DIHGGYPIHYASQMCGHAS---------------EM------GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA  220 (321)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~---------------~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  220 (321)
                      +..|.||++.|+.......               ..      -.....+.+++++|++++.+++..+..|.||||.|+..
T Consensus       209 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  288 (437)
T 1n11_A          209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE  288 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            6666666666554321000               00      00114457889999999999998889999999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       289 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            99999999999999999999999999999999999999999999 69999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCccceeec
Q psy138          301 ATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       301 a~~~~~~~~g~t~l~~~~  318 (321)
                      |+++.+|.+|+||++++.
T Consensus       368 a~~~~~~~~g~t~l~~A~  385 (437)
T 1n11_A          368 ASPNEVSSDGTTPLAIAK  385 (437)
T ss_dssp             CCSCCCCSSSCCHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHH
Confidence            999999999999999854

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-52  Score=360.12  Aligned_cols=304  Identities=26%  Similarity=0.321  Sum_probs=255.1

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHH
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA   81 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   81 (321)
                      ++++++|++++..        ++ ..+..|.||||.|+..|+.+++++|++.+.. ++.++..|.||||+|+..|+.+++
T Consensus        27 ~~~v~~Ll~~g~~--------~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v   96 (437)
T 1n11_A           27 LPIVKNLLQRGAS--------PN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMV   96 (437)
T ss_dssp             HHHHHHHHHTTCC--------SC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHcCCC--------CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHH
Confidence            4567777776322        11 1234588899999999999999999888765 778888889999999999999999


Q ss_pred             HHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q psy138           82 ETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP  161 (321)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~  161 (321)
                      ++|++++.+ ++..+..|.||||+|+..|+.+++++|++++++.+..+..|.|||++|+..|+.+++++|+++|++++..
T Consensus        97 ~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  175 (437)
T 1n11_A           97 KLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  175 (437)
T ss_dssp             HHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            999998877 5777888899999999999999999999998888888888999999999999999999999999999999


Q ss_pred             CCCCCchhhhHhhhccccc---------------------ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc
Q psy138          162 DIHGGYPIHYASQMCGHAS---------------------EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA  220 (321)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  220 (321)
                      +..|.||++.|+.......                     ..........+++++|++.|.+++..+..|.||||.|+..
T Consensus       176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  255 (437)
T 1n11_A          176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE  255 (437)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC
Confidence            9999999999877532100                     0000124567888888888888888888888999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       256 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            99999999999999998888899999999999999999999998 69999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCccceee
Q psy138          301 ATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       301 a~~~~~~~~g~t~l~~~  317 (321)
                      ++++.+|..|.||||++
T Consensus       335 ad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          335 ADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             CCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCCCCHHHHH
Confidence            99999999999999874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-52  Score=336.38  Aligned_cols=266  Identities=28%  Similarity=0.351  Sum_probs=251.4

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCccccc-ccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRER-DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      .+|.|+||.|++.|+.+++++|++.+.. ++.. +..|.||||+|+..|+.+++++|++++.. ++..+..|.||||+|+
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            3589999999999999999999999876 5544 78899999999999999999999999988 6778899999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCCCchhhhHhhhcc
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP----------DIHGGYPIHYASQMCG  177 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~----------~~~~~~~l~~~~~~~~  177 (321)
                      ..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..          +..|.+|++.|+.   
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~---  157 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE---  157 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH---
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH---
Confidence            999999999999999999999999999999999999999999999999999877          7789999999997   


Q ss_pred             cccccccchhhhHHHHHHHHHc-CCCCcccCCCCCchhHHHHhcCC----HHHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHH-NVDVNVVDKDGRQPILWAASAGS----SDAILALVKAGANVEAHDKDGLTALHCAAS  252 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~  252 (321)
                               ..+.+++++|++. |.+++..+..|.||||.|+..++    .+++++|+++|++++.++..|.||||+|+.
T Consensus       158 ---------~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~  228 (285)
T 1wdy_A          158 ---------KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             ---------HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             ---------cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence                     4458999999997 99999999999999999999999    899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q psy138          253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR  308 (321)
Q Consensus       253 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~  308 (321)
                      .|+.+++++|++..|++++.+|..|.||||+|++.++.+++++|+++||+++.+|.
T Consensus       229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            99999999999967999999999999999999999999999999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-50  Score=339.63  Aligned_cols=289  Identities=27%  Similarity=0.329  Sum_probs=257.9

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.++||.|++.|+.+.+++++...+.+++.+|..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHH
Confidence            345899999999999999999999988888999999999999999999999999999999988 6888999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc-------
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS-------  180 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------  180 (321)
                      ..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.+|++.+........       
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~  179 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG  179 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999988754311100       


Q ss_pred             --ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc---CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCC
Q psy138          181 --EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA---GSSDAILALVKAGANVEAHDKDGLTALHCAASRGH  255 (321)
Q Consensus       181 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  255 (321)
                        ..........+.++.++..+......+..+.||||.|+..   +..+++++|+++|++++.++..|.||||+|+..|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  259 (351)
T 3utm_A          180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH  259 (351)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC
Confidence              0001112334556666665555555678899999999999   55899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       256 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      .+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++..
T Consensus       260 ~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          260 NDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            999999999 79999999999999999999999999999999999999999999999999853

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-48  Score=325.08  Aligned_cols=266  Identities=25%  Similarity=0.272  Sum_probs=230.9

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCccHHHHHHHcCcHHHHHHHHHhCCcc-------------
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDR-TRKTVLHYCAENTILSCAETILEVAPDL-------------   91 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-------------   91 (321)
                      ..+.+|.|+||.|++.|+.++|++||+.|.+ ++.++. .|.||||+|+..|+.+++++|+++++.+             
T Consensus        20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence            3455699999999999999999999999866 776654 5899999999999999999999987653             


Q ss_pred             -------------------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccC----------CCCCCcHHHHHHhc
Q psy138           92 -------------------IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ----------DNEGHSVVHWATVC  142 (321)
Q Consensus        92 -------------------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~  142 (321)
                                         ++..+..|.||+|+|+..|+.+++++|+++|++++..          +..|.||||+|+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence                               3445678899999999999999999999999887653          34688999999999


Q ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcC
Q psy138          143 GEVEALETVLS-AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG  221 (321)
Q Consensus       143 ~~~~i~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  221 (321)
                      |+.+++++|++ .|++++..+..|.++++.++.....        .....++++|+++|++++.++..|.||||.|+..|
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~--------~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~  250 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD--------SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  250 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT--------TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc--------ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence            99999999995 5899999999999999887654332        23356889999999999999999999999999999


Q ss_pred             CHHHHHHHHHc-CCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          222 SSDAILALVKA-GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       222 ~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      +.++++.|++. |++++.+|.+|.||||+|+..|+.+++++|++ +|++++.+     +||++|++.|+.+++++|+++|
T Consensus       251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCc
Confidence            99999999975 89999999999999999999999999999999 69988754     5999999999999999999999


Q ss_pred             CCCCcc
Q psy138          301 ATPNRQ  306 (321)
Q Consensus       301 a~~~~~  306 (321)
                      |++|..
T Consensus       325 A~~d~~  330 (337)
T 4g8k_A          325 AKEDFH  330 (337)
T ss_dssp             CCC---
T ss_pred             CCCCCC
Confidence            999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.9e-48  Score=324.10  Aligned_cols=238  Identities=25%  Similarity=0.330  Sum_probs=210.4

Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCc--------------
Q psy138           62 DRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLAAIAGNVPLIHTLLAHRANVN--------------  126 (321)
Q Consensus        62 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~--------------  126 (321)
                      +..|.|+||.|++.|+.++|++|+++|++ ++..+ ..|.||||+|+..|+.++|++|+++|++++              
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            34578999999999999999999999988 45544 569999999999999999999999988654              


Q ss_pred             -------------------cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCCCchhhhHhhhcc
Q psy138          127 -------------------SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP----------DIHGGYPIHYASQMCG  177 (321)
Q Consensus       127 -------------------~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~----------~~~~~~~l~~~~~~~~  177 (321)
                                         ..+..|.||+++|+..|+.+++++|+++|++++..          +..|.||||+|+.   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~---  177 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE---  177 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH---
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH---
Confidence                               45667889999999999999999999999887643          4468899999987   


Q ss_pred             cccccccchhhhHHHHHHHHH-cCCCCcccCCCCCchhHHHHhcCC----HHHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLH-HNVDVNVVDKDGRQPILWAASAGS----SDAILALVKAGANVEAHDKDGLTALHCAAS  252 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~  252 (321)
                               ..+.+++++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.++..|.||||+|+.
T Consensus       178 ---------~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~  248 (337)
T 4g8k_A          178 ---------KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  248 (337)
T ss_dssp             ---------HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             ---------CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                     445899999996 699999999999999998876544    357899999999999999999999999999


Q ss_pred             cCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       253 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      .|+.+++++|++..|++++.+|..|.||||+|++.|+.+++++|+++||+++.+     +|||++
T Consensus       249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A  308 (337)
T 4g8k_A          249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTA  308 (337)
T ss_dssp             TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHH
T ss_pred             hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHH
Confidence            999999999999679999999999999999999999999999999999999865     588763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=319.57  Aligned_cols=264  Identities=20%  Similarity=0.254  Sum_probs=210.5

Q ss_pred             ccccccChhHHHHHHHcCCHHHHHHHHHcCC----------CcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccc
Q psy138           25 VHNTMEGATSLMYAAQQGKDAEVKAILASRP----------NAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA   94 (321)
Q Consensus        25 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~   94 (321)
                      .+.+..|.|+||+|+..|+.+.+..++..++          ..++.++..|.||||+|+..|+.+++++|++.+.+ ++.
T Consensus         9 ~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~   87 (285)
T 3d9h_A            9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNI   87 (285)
T ss_dssp             ---------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCE
T ss_pred             cccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCC
Confidence            3446679999999999999888888766542          23566789999999999999999999999999887 688


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhh
Q psy138           95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQ  174 (321)
Q Consensus        95 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~  174 (321)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|++++..+ .|.||+++|+.
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~  166 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR  166 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999987644 59999999987


Q ss_pred             hcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcC
Q psy138          175 MCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRG  254 (321)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~  254 (321)
                                  ....+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..+
T Consensus       167 ------------~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          167 ------------RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTA  233 (285)
T ss_dssp             ------------HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTT
T ss_pred             ------------cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcC
Confidence                        4457999999999999999999999999999999999999999999999985 889999999999999


Q ss_pred             CHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcc
Q psy138          255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY-GATPNRQ  306 (321)
Q Consensus       255 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-ga~~~~~  306 (321)
                      +.+++++|++ .|++++.+|..|.|||++|+  ++.+++++|+++ |+++..+
T Consensus       234 ~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~~  283 (285)
T 3d9h_A          234 SEELACLLMD-FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPKP  283 (285)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-------
T ss_pred             CHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCCC
Confidence            9999999999 69999999999999999998  567899999998 8876653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-48  Score=325.74  Aligned_cols=263  Identities=24%  Similarity=0.294  Sum_probs=233.8

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCccHHHHHHHcCcHHHHHHHH--------HhCCccccccC
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERD-RTRKTVLHYCAENTILSCAETIL--------EVAPDLIEAAD   96 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~   96 (321)
                      ..+..|.|+||.|+..|. ++++.|+.   ..++.+| ..|.||||+|+..|+.+++++|+        +.+.+ ++..+
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d  163 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMD  163 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCC
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCC
Confidence            446779999999999665 77777754   2466677 78999999999999999888887        66766 68889


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCchhhhHh
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG---AEPSTPDIHGGYPIHYAS  173 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~---~~~~~~~~~~~~~l~~~~  173 (321)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++   .+++..+..|.||+++|+
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998   799999999999999998


Q ss_pred             hhcccccccccchhhhHHHHHHHHHcCCCCcc--------cCCCCCchhHHHHhcCCHHHHHHHHHcC-CCcccccCCCC
Q psy138          174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV--------VDKDGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGL  244 (321)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~  244 (321)
                      ...+         ....+++++|++.|.+++.        .+..|.||||+|+..|+.+++++|++++ ++++..|..|.
T Consensus       244 ~~~~---------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~  314 (373)
T 2fo1_E          244 HNEG---------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  314 (373)
T ss_dssp             HSCS---------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             HhCC---------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCC
Confidence            7532         1258999999999999886        5668999999999999999999999876 99999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy138          245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       245 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                      ||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++|++.
T Consensus       315 TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          315 TPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999999999999999 79999999999999999999999999999999999863

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-46  Score=306.03  Aligned_cols=242  Identities=26%  Similarity=0.312  Sum_probs=229.0

Q ss_pred             cCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhc
Q psy138           63 RTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC  142 (321)
Q Consensus        63 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~  142 (321)
                      ..|.||||.|++.|+.+++++|+++++.+....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            35789999999999999999999999885444488899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCccc----------CCCCCc
Q psy138          143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV----------DKDGRQ  212 (321)
Q Consensus       143 ~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~t  212 (321)
                      |+.+++++|+++|++++..+..|.||++.|+..            .+.+++++|++.|.+++..          +..|.|
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~------------~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t  150 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY------------GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT------------TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh------------CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence            999999999999999999999999999999874            4579999999999999877          778999


Q ss_pred             hhHHHHhcCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHcCC----HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHc
Q psy138          213 PILWAASAGSSDAILALVKA-GANVEAHDKDGLTALHCAASRGH----RECLETLITLCGADVDVIDTNGCSALFYAVTL  287 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  287 (321)
                      |||.|+..|+.+++++|++. |++++..+..|.||||+|+..++    .+++++|++ .|++++.++..|.||||+|+..
T Consensus       151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHc
Confidence            99999999999999999987 99999999999999999999999    999999999 7999999999999999999999


Q ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCccceee
Q psy138          288 GHADATTLLLQ-YGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       288 ~~~~~~~~Ll~-~ga~~~~~~~~g~t~l~~~  317 (321)
                      |+.+++++|++ .|++++.+|..|+||||++
T Consensus       230 ~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence            99999999999 8999999999999999985

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.3e-47  Score=306.10  Aligned_cols=241  Identities=21%  Similarity=0.271  Sum_probs=201.2

Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHHhCC----------ccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCC
Q psy138           62 DRTRKTVLHYCAENTILSCAETILEVAP----------DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE  131 (321)
Q Consensus        62 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  131 (321)
                      ...|.|++|+|+..|+.+.+..++...+          ...+..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            4578999999999999877777655432          224567889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCC
Q psy138          132 GHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGR  211 (321)
Q Consensus       132 ~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  211 (321)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||+++|+.            ..+.+++++|++.|.+++..+ .|.
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~------------~~~~~~v~~Ll~~g~~~~~~~-~g~  158 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV------------SGSWDCVNLLLQHGASVQPES-DLA  158 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH------------HTCHHHHHHHHHTTCCSSCSC-TTS
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------cCHHHHHHHHHHCCCCCCCCC-CCC
Confidence            9999999999999999999999999999999999999999997            445899999999999988644 599


Q ss_pred             chhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHH
Q psy138          212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD  291 (321)
Q Consensus       212 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  291 (321)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++. +..|.||||+|+..++.+
T Consensus       159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~  236 (285)
T 3d9h_A          159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEE  236 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999 6999995 889999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCccceee
Q psy138          292 ATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       292 ~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++++|+++|++++.+|..|+||+|++
T Consensus       237 ~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          237 LACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            99999999999999999999999986

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-47  Score=310.41  Aligned_cols=250  Identities=21%  Similarity=0.179  Sum_probs=185.8

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCc--cccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcH
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPD--LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSV  135 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~  135 (321)
                      ++.+|..|.||||+|+..|+.+++++|++.+..  .++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            345677788888888888888888888877654  246667778888888888888888888888888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCC-------------CCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCC
Q psy138          136 VHWATVCGEVEALETVLSAGAEPSTPD-------------IHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD  202 (321)
Q Consensus       136 l~~a~~~~~~~i~~~L~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (321)
                      ||+|+..|+.+++++|++++.+.....             ..+.++++.+...           .........+...+.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  150 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP-----------NPENEEEPRDEDWRLQ  150 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------CCCGGGG
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc-----------ccchhhhhhhhhhhhc
Confidence            888888888888888888776543221             1223333333221           1112344455556677


Q ss_pred             CcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHH
Q psy138          203 VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK-DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL  281 (321)
Q Consensus       203 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  281 (321)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL  229 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPL  229 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHH
Confidence            888899999999999999999999999999999999885 59999999999999999999999 6999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeecc
Q psy138          282 FYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWRS  319 (321)
Q Consensus       282 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~~  319 (321)
                      |+|+..++.+++++|+++||+++.+|..|.||+++..|
T Consensus       230 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          230 GSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             HHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            99999999999999999999999999999999998654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-46  Score=299.83  Aligned_cols=232  Identities=26%  Similarity=0.276  Sum_probs=174.5

Q ss_pred             ccccccCCccHHHHHHHcC-------------cHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q psy138           58 VRERDRTRKTVLHYCAENT-------------ILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN  124 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~  124 (321)
                      ++.+|..|.||||+|+..|             +.+++++|++.++.+....+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4445555666666666544             888888888888876666678888888888888888888888888888


Q ss_pred             CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCC
Q psy138          125 VNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDV  203 (321)
Q Consensus       125 ~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (321)
                      ++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||+++|+..            ...+++++|++.|+++
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~g~~~  150 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL------------AVEGMLEDLINSHADV  150 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH------------TCSSHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc------------ChHHHHHHHHHcCCCC
Confidence            88888888888888888888888888888876 7788888888888888864            3357888899999999


Q ss_pred             cccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHH
Q psy138          204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY  283 (321)
Q Consensus       204 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  283 (321)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||+++
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~  229 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDI  229 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 699999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCC
Q psy138          284 AVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       284 A~~~~~~~~~~~Ll~~ga~  302 (321)
                      |++.|+.+++++|.+....
T Consensus       230 A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          230 AQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHTTCHHHHHHHHC----
T ss_pred             HHHcCCHHHHHHHHHHhhh
Confidence            9999999999999976543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4e-47  Score=319.43  Aligned_cols=261  Identities=19%  Similarity=0.243  Sum_probs=237.3

Q ss_pred             ccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHH
Q psy138           27 NTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA  106 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A  106 (321)
                      .+.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++..   ..+..|.||||+|
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t~L~~A   91 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQKPIHLA   91 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCHHHHH
Confidence            356699999999999999999999998765 888999999999999999999999999999985   2335799999999


Q ss_pred             HHhCCHHHHHHHHHc----CCCCcc-----------------CCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCCCCC
Q psy138          107 AIAGNVPLIHTLLAH----RANVNS-----------------QDNEGHSVVHWATVCG--EVEALETVLSAGAEPSTPDI  163 (321)
Q Consensus       107 ~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~i~~~L~~~~~~~~~~~~  163 (321)
                      +..|+.+++++|+++    |.+++.                 .+..|.||||+|+..|  +.+++++|+++|++++..+.
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~  171 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK  171 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence            999999999999998    888776                 7888999999999999  99999999999999999999


Q ss_pred             CCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCC-----CcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccc
Q psy138          164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD-----VNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA  238 (321)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  238 (321)
                      .|.|||++|+.            ..+.+++++|++.|.+     ++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       172 ~g~t~L~~A~~------------~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          172 ADETPLMRAME------------FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             TSCCHHHHHHH------------TTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred             CCCCHHHHHHH------------cCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999997            3457999999999988     999999999999999999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCccc------------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          239 HDKDGLTALHCAASRGHRECLETLITLCGADVDV------------IDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       239 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      .|..|.||||+|+..|+.+++++|++ .|++++.            .+..++||++.|+..++.+.+..|++.+++..
T Consensus       240 ~d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          240 EDNEHTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             CCTTSCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 5766533            46688999999999998888888887775543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.7e-45  Score=289.03  Aligned_cols=226  Identities=23%  Similarity=0.268  Sum_probs=167.5

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      +.+|||.|++.|+.+.++++++.++..++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcC
Confidence            455666666666666666666655555555555666666666666666666666665554 4455555666666666666


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhH
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGL  190 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (321)
                      +.+++++|+++|++++..+..|.|||++|+..++.+++++|++                                     
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------------------------------------  127 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-------------------------------------  127 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------------------------
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------------------------------------
Confidence            6666666666666665555556666666665555555555554                                     


Q ss_pred             HHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCc
Q psy138          191 AVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV  270 (321)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  270 (321)
                              +|.+++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++ .|+++
T Consensus       128 --------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~  198 (231)
T 3aji_A          128 --------GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASI  198 (231)
T ss_dssp             --------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCS
T ss_pred             --------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCC
Confidence                    455555666778899999999999999999999999999999999999999999999999999999 69999


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy138          271 DVIDTNGCSALFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       271 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                      +.+|..|.||+++|+..++.+++++|+++|+++
T Consensus       199 ~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          199 YIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             CCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            999999999999999999999999999998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-44  Score=300.70  Aligned_cols=259  Identities=25%  Similarity=0.267  Sum_probs=233.6

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            45599999999999999999999998766 888999999999999999999999999999988 6788899999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH---------------------HhcCCHHHHHHHHHcCCCCCCCCCCCC
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA---------------------TVCGEVEALETVLSAGAEPSTPDIHGG  166 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a---------------------~~~~~~~i~~~L~~~~~~~~~~~~~~~  166 (321)
                      ..|+.+++++|+++|++++..+..|.||++++                     +..+..+.++.++..+......+..+.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  212 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE  212 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence            99999999999999999999999999987765                     455666777777777666666788899


Q ss_pred             chhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcH
Q psy138          167 YPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA  246 (321)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~  246 (321)
                      ||++.|+....         ....+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus       213 t~L~~A~~~~~---------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~  283 (351)
T 3utm_A          213 TALHCAVASLH---------PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA  283 (351)
T ss_dssp             CHHHHHHHCCS---------TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CHHHHHHHHhC---------ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            99999987422         245789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       247 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      ||+|+..|+.+++++|++ .|++++.+|..|.||+++|    ..+++++|.+.+..
T Consensus       284 L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          284 LHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             HHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             HHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            999999999999999999 6999999999999999998    67899999988743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-47  Score=317.42  Aligned_cols=242  Identities=22%  Similarity=0.290  Sum_probs=218.1

Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC-CCCCcHHHHHHHhCCHHHHHHHH--------HcCCCCccCCC
Q psy138           60 ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLAAIAGNVPLIHTLL--------AHRANVNSQDN  130 (321)
Q Consensus        60 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~  130 (321)
                      ..+..|.||||.|+..+. +++++|+..  . ++..+ ..|.||||+|+..|+.+++++|+        +.|++++..+.
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~-~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~  164 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITRE--S-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC  164 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCSTT--T-TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhccc--c-ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            456789999999999664 788887653  2 45556 78999999999999988877776        78999999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcC---CCCcccC
Q psy138          131 EGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHN---VDVNVVD  207 (321)
Q Consensus       131 ~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~  207 (321)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+.            ....+++++|++.+   .+++..+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~------------~g~~~~v~~Ll~~~~~~~~~~~~d  232 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA------------NRDFGMMVYMLNSTKLKGDIEELD  232 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH------------TTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHH------------CCCHHHHHHHHhcCccccChhhcC
Confidence            99999999999999999999999999999999999999999997            34589999999988   7899999


Q ss_pred             CCCCchhHHHHhcC---CHHHHHHHHHcCCCccc--------ccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCC
Q psy138          208 KDGRQPILWAASAG---SSDAILALVKAGANVEA--------HDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTN  276 (321)
Q Consensus       208 ~~~~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  276 (321)
                      ..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++..|++++.+|..
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~  312 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED  312 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC
Confidence            99999999999998   89999999999999886        56789999999999999999999999656999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       277 g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+||||++
T Consensus       313 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999985

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-45  Score=290.99  Aligned_cols=229  Identities=25%  Similarity=0.329  Sum_probs=156.1

Q ss_pred             cccccCCccHHHHHHHcCcHHHHHHHHH----hCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCc
Q psy138           59 RERDRTRKTVLHYCAENTILSCAETILE----VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHS  134 (321)
Q Consensus        59 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t  134 (321)
                      +.+|..|.||||+|+..|+.+++++|++    .+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            3455566666666666666666666665    2333 4555666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccC-CC
Q psy138          135 VVHWATVCGEVEALETVLSAGA----EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD-KD  209 (321)
Q Consensus       135 ~l~~a~~~~~~~i~~~L~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  209 (321)
                      ||++|+..++.+++++|++.+.    +++..+..|.+|++.|+.            ..+.+++++|++.|.+++..+ ..
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~------------~~~~~~~~~Ll~~g~~~~~~~~~~  149 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN------------TECQETVQLLLERGADIDAVDIKS  149 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH------------HTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH------------cCCHHHHHHHHHcCCCcccccccC
Confidence            6666666666666666666655    445555555555555554            223455666666666666665 66


Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC
Q psy138          210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH  289 (321)
Q Consensus       210 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  289 (321)
                      |.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCc
Confidence            7888888888888888888888888888888888888888888888888888888 688888888888888888888888


Q ss_pred             HHHHHHHHHcCC
Q psy138          290 ADATTLLLQYGA  301 (321)
Q Consensus       290 ~~~~~~Ll~~ga  301 (321)
                      .++++.|.+.++
T Consensus       229 ~~i~~~l~~~~a  240 (241)
T 1k1a_A          229 IDILRGKATRPA  240 (241)
T ss_dssp             HHHHTC------
T ss_pred             HHHHhhhccCCC
Confidence            888888887765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-45  Score=310.34  Aligned_cols=245  Identities=18%  Similarity=0.210  Sum_probs=221.5

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHH
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH  137 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~  137 (321)
                      .+..|..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++.  ..|.|||+
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            556778899999999999999999999999987 688899999999999999999999999999996654  57999999


Q ss_pred             HHHhcCCHHHHHHHHHc----CCCCCC-----------------CCCCCCchhhhHhhhcccccccccchhhhHHHHHHH
Q psy138          138 WATVCGEVEALETVLSA----GAEPST-----------------PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVL  196 (321)
Q Consensus       138 ~a~~~~~~~i~~~L~~~----~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (321)
                      +|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+....          ...+++++|
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~----------~~~~~v~~L  159 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP----------EYLEMIKIL  159 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG----------GGHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC----------chHHHHHHH
Confidence            99999999999999998    777665                 77889999999997421          158999999


Q ss_pred             HHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCC-----cccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy138          197 LHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN-----VEAHDKDGLTALHCAASRGHRECLETLITLCGADVD  271 (321)
Q Consensus       197 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  271 (321)
                      ++.|++++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|++ .|++++
T Consensus       160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~  238 (364)
T 3ljn_A          160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVN  238 (364)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTT
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            999999999999999999999999999999999999999     99999999999999999999999999999 799999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------------cCCCCCcccee
Q psy138          272 VIDTNGCSALFYAVTLGHADATTLLLQYGATPNR------------QDRKGRTYEYQ  316 (321)
Q Consensus       272 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~------------~~~~g~t~l~~  316 (321)
                      .+|..|.||||+|+..|+.+++++|+++|++++.            .+..|+||++.
T Consensus       239 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  295 (364)
T 3ljn_A          239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP  295 (364)
T ss_dssp             CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred             CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence            9999999999999999999999999999987644            45566666654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-44  Score=283.18  Aligned_cols=226  Identities=24%  Similarity=0.367  Sum_probs=169.8

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHH
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH  137 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~  137 (321)
                      ++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||+
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            445566777777777777777777777777666 4566667777777777777777777777777777777777777777


Q ss_pred             HHHhcCCHHHHHHHHHcC-CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH
Q psy138          138 WATVCGEVEALETVLSAG-AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW  216 (321)
Q Consensus       138 ~a~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  216 (321)
                      +|+..|+.+++++|++.+ .+++..+..|.||++.|+..            ...+++++|+++|.+++..+..|.||||.
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~------------~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY------------KHVDLVKLLLSKGSDINIRDNEENICLHW  150 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc------------CCHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            777777777777777776 56666666666666666652            23566777777777777777778888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy138          217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL  296 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  296 (321)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..++...+..|
T Consensus       151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888 6888888888888888888888877555444


Q ss_pred             H
Q psy138          297 L  297 (321)
Q Consensus       297 l  297 (321)
                      +
T Consensus       230 ~  230 (237)
T 3b7b_A          230 S  230 (237)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-44  Score=287.25  Aligned_cols=225  Identities=24%  Similarity=0.306  Sum_probs=184.9

Q ss_pred             cccChhHHHHHHHcC-------------CHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccc
Q psy138           28 TMEGATSLMYAAQQG-------------KDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA   94 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g-------------~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~   94 (321)
                      +.+|.||||+|+..|             +.+++++|++.++......|..|.||||+|+..|+.+++++|++++.+ ++.
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~   85 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANI   85 (253)
T ss_dssp             ---------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCC
Confidence            456999999999987             899999999999886666789999999999999999999999999988 688


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHh
Q psy138           95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS  173 (321)
Q Consensus        95 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~  173 (321)
                      .+..|.||||+|+..|+.+++++|++++. +++..+..|.|||++|+..++.+++++|++.|++++..+..|.||+|+|+
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  165 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA  165 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            89999999999999999999999999987 89999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHc
Q psy138          174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASR  253 (321)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  253 (321)
                      .            ..+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..
T Consensus       166 ~------------~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  233 (253)
T 1yyh_A          166 A------------VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER  233 (253)
T ss_dssp             H------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             H------------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHc
Confidence            7            4458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhh
Q psy138          254 GHRECLETLITL  265 (321)
Q Consensus       254 ~~~~~~~~Ll~~  265 (321)
                      |+.+++++|...
T Consensus       234 g~~~i~~~l~~~  245 (253)
T 1yyh_A          234 MHHDIVRLLDLE  245 (253)
T ss_dssp             TCHHHHHHHHC-
T ss_pred             CCHHHHHHHHHH
Confidence            999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.1e-44  Score=281.70  Aligned_cols=196  Identities=22%  Similarity=0.261  Sum_probs=169.9

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      ..+.+|.||||+|+..|+.+++++|++.+.. ++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~  112 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHY  112 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            3467799999999999999999999998765 888899999999999999999999999999988 67888999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccc
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGND  185 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (321)
                      |+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.                         
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------------------------  167 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-------------------------  167 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-------------------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-------------------------
Confidence            9999999999999999999999999999999999999999988888877665544                         


Q ss_pred             hhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy138          186 VRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL  265 (321)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  265 (321)
                                          .+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|.+ 
T Consensus       168 --------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-  226 (231)
T 3aji_A          168 --------------------QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG-  226 (231)
T ss_dssp             --------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH-
T ss_pred             --------------------cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc-
Confidence                                44556677777777788888888888888888888888888888888788888888777 


Q ss_pred             cCCC
Q psy138          266 CGAD  269 (321)
Q Consensus       266 ~~~~  269 (321)
                      .|++
T Consensus       227 ~~a~  230 (231)
T 3aji_A          227 EEAS  230 (231)
T ss_dssp             HHHC
T ss_pred             cccc
Confidence            3543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-43  Score=279.05  Aligned_cols=213  Identities=25%  Similarity=0.385  Sum_probs=204.8

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhh
Q psy138           92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY  171 (321)
Q Consensus        92 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~  171 (321)
                      .+..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|++++..+..|.||++.
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccccccccchhhhHHHHHHHHHcC-CCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Q psy138          172 ASQMCGHASEMGNDVRVGLAVLKVLLHHN-VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA  250 (321)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a  250 (321)
                      |+.            ....+++++|++.+ .+++..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|
T Consensus        84 A~~------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  151 (237)
T 3b7b_A           84 AAK------------KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA  151 (237)
T ss_dssp             HHH------------TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHH------------cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence            987            34589999999998 88999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       251 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      +..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||+|++
T Consensus       152 ~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          152 AFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred             HHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            99999999999999 6999999999999999999999999999999999999999999999999985

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=293.06  Aligned_cols=227  Identities=25%  Similarity=0.326  Sum_probs=143.3

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCcc-------ccccCCCCCcHHHHHHHhCCH-HHHHHHHHcCCCCccCCCCCCcHH
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDL-------IEAADEDGYTPLHLAAIAGNV-PLIHTLLAHRANVNSQDNEGHSVV  136 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-------~~~~~~~~~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l  136 (321)
                      +.++|+.|+..|+.++|++|++.+...       .+..+..+.|||++|+..++. .++++|++.|++++..+..|.|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            334444444444444444444433321       233345566677666666554 356666667777776667777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH
Q psy138          137 HWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW  216 (321)
Q Consensus       137 ~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  216 (321)
                      |+|+..|+.+++++|++.|++++..+..|.||++.++.            ....+++++|++.|++++..+..|.||||+
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~------------~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~  158 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ------------QGHFQVVKCLLDSNAKPNKKDLSGNTPLIY  158 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHH------------HTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccc------------cChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            77777777777777777777776666677777776665            333567777777777888888889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC-HHHHHH
Q psy138          217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH-ADATTL  295 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~  295 (321)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|+|++.+|..|.||||+|+++++ .+++++
T Consensus       159 A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~  237 (269)
T 4b93_B          159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIMELLQV  237 (269)
T ss_dssp             HHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 699999999999999999988775 355556


Q ss_pred             HHHcCCCCC
Q psy138          296 LLQYGATPN  304 (321)
Q Consensus       296 Ll~~ga~~~  304 (321)
                      |.+.++.++
T Consensus       238 l~~~~~~~~  246 (269)
T 4b93_B          238 VPSCVASLD  246 (269)
T ss_dssp             ---------
T ss_pred             HHHhchhhh
Confidence            666665443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.2e-43  Score=277.74  Aligned_cols=214  Identities=27%  Similarity=0.382  Sum_probs=200.4

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHH----cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc
Q psy138           92 IEAADEDGYTPLHLAAIAGNVPLIHTLLA----HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGY  167 (321)
Q Consensus        92 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~  167 (321)
                      .+..|.+|.||||+|+..|+.+++++|++    .|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            35678899999999999999999999997    79999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhcccccccccchhhhHHHHHHHHHcCC----CCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccccc-CC
Q psy138          168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV----DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KD  242 (321)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~  242 (321)
                      |+++|+.            ....+++++|++.+.    +++..+..|.||||.|+..|+.+++++|+++|++++..+ ..
T Consensus        82 ~l~~A~~------------~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  149 (241)
T 1k1a_A           82 AAHLACE------------HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS  149 (241)
T ss_dssp             HHHHHHH------------TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred             HHHHHHH------------cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC
Confidence            9999997            345799999999987    888889999999999999999999999999999999998 88


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          243 GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       243 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      |.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|++.
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  224 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  224 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999 69999999999999999999999999999999999999999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=274.76  Aligned_cols=232  Identities=24%  Similarity=0.325  Sum_probs=175.8

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.++|+.|++.|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++++.......+..|.||||+|+
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            34577777777777777777777776644 66667777777777777777777777777777655455555777777777


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchh
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR  187 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (321)
                      ..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|+++                             
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-----------------------------  135 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-----------------------------  135 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------------
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-----------------------------
Confidence            777777777777777777777777777777777777777777776665554                             


Q ss_pred             hhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC-HHHHHHHHHcCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHhh
Q psy138          188 VGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS-SDAILALVKAGANVEAHDK-DGLTALHCAASRGHRECLETLITL  265 (321)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~  265 (321)
                                      +..+..|.||||.|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|++ 
T Consensus       136 ----------------~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-  198 (240)
T 3eu9_A          136 ----------------DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-  198 (240)
T ss_dssp             ----------------TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             ----------------cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-
Confidence                            4445556677777775554 7888888889988888876 88899999999999999999998 


Q ss_pred             cCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q psy138          266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ  306 (321)
Q Consensus       266 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~  306 (321)
                      .|++++.++..|.||+++|++.++.+++++|+++|++....
T Consensus       199 ~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~  239 (240)
T 3eu9_A          199 AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD  239 (240)
T ss_dssp             HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
Confidence            59999999999999999999999999999999998776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.8e-43  Score=275.13  Aligned_cols=209  Identities=26%  Similarity=0.353  Sum_probs=94.4

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcC--CCCcc-CCCCCCcHHHHHHh
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR--ANVNS-QDNEGHSVVHWATV  141 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~~~t~l~~a~~  141 (321)
                      |.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.|||++|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            4455555555555555555555554443444555555555555555555555555555  33333 44455555555555


Q ss_pred             cCCHHHHHHHHHcC--CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHh
Q psy138          142 CGEVEALETVLSAG--AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS  219 (321)
Q Consensus       142 ~~~~~i~~~L~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  219 (321)
                      .|+.+++++|+++|  .+++..+..|.||++.|+.            ....+++++|+++|.+++..+..|.||||+|+.
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG------------KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS  149 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH------------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHH------------cCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            55555555555443  2222222111111111111            000112222222222223333334444555555


Q ss_pred             cCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHH
Q psy138          220 AGSSDAILALVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAV  285 (321)
Q Consensus       220 ~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  285 (321)
                      .|+.+++++|+++| ++++..|..|.||||+|+..++.+++++|++..|++++.+|..|.||+++|+
T Consensus       150 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             TTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             cCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            55555555555555 5555555555555555555555555555552245555555555555555553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-43  Score=289.64  Aligned_cols=254  Identities=22%  Similarity=0.293  Sum_probs=202.8

Q ss_pred             cccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCc
Q psy138           22 DKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYT  101 (321)
Q Consensus        22 ~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  101 (321)
                      ......+.+|.|+||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++.+ ++..+..|.|
T Consensus        31 ~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t  108 (299)
T 1s70_B           31 RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWI  108 (299)
T ss_dssp             CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            33444556799999999999999999999998866 888899999999999999999999999999988 6888899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCchhhhHhhhccccc
Q psy138          102 PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSA-GAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      |||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++++.. +.+++.....+.              
T Consensus       109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~--------------  174 (299)
T 1s70_B          109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE--------------  174 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH--------------
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhh--------------
Confidence            99999999999999999999999999999999999999999999999988864 333221111000              


Q ss_pred             ccccchhhhHHHHHHHHH-cCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLH-HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL  259 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  259 (321)
                            ......+..++. ........+..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus       175 ------~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v  248 (299)
T 1s70_B          175 ------RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC  248 (299)
T ss_dssp             ------HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ------hHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHH
Confidence                  111223333333 3344444567788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       260 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      ++|++ .|++++.+|..|.||+++|++. ..+.++.+++.
T Consensus       249 ~~Ll~-~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          249 RILVE-NLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             HHHHH-cCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            88888 6888888888888888888654 34444444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-42  Score=284.52  Aligned_cols=260  Identities=27%  Similarity=0.354  Sum_probs=220.7

Q ss_pred             HHHHcCCHHHHHHHHHcCCCc--------ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           37 YAAQQGKDAEVKAILASRPNA--------VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        37 ~A~~~g~~~~~~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .+++.+..+.++.++......        ....+..|.||||.|+..|+.+++++|++++.+ ++..+..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            467778888888888776432        112345678999999999999999999999988 68889999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+.            ..
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------------~~  150 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE------------EA  150 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS------------HH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh------------cc
Confidence            999999999999999999999999999999999999999999999999999999999999999986            34


Q ss_pred             hHHHHHHHHH-cCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHhhc
Q psy138          189 GLAVLKVLLH-HNVDVNVVDKDGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLITLC  266 (321)
Q Consensus       189 ~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  266 (321)
                      ..+++++++. .+.+++.....+.++++        ..+..++..+ ......+..|.||||+|+..|+.+++++|++ .
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~  221 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-A  221 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-T
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-c
Confidence            4677776665 46655543333223332        2334445444 4444567899999999999999999999999 7


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          267 GADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       267 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|++.
T Consensus       222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999863

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.5e-44  Score=289.26  Aligned_cols=246  Identities=13%  Similarity=0.134  Sum_probs=218.5

Q ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy138           39 AQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL  118 (321)
Q Consensus        39 ~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  118 (321)
                      ++..+.+.++.+|..+  .++.+|..|.||||+|+..|+.+++++|++++.+ ++..  +|.||||+|+..|+.+++++|
T Consensus         7 i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            3455666667777665  3788899999999999999999999999999877 3444  589999999999999999999


Q ss_pred             HHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CchhhhHhhhcccccccccchhhhHHHHHHHH
Q psy138          119 LAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHG-GYPIHYASQMCGHASEMGNDVRVGLAVLKVLL  197 (321)
Q Consensus       119 l~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (321)
                      +++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .||+++|+.            ..+.+++++|+
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~------------~~~~~~v~~Ll  149 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM------------LNDVSIVSYFL  149 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH------------TTCHHHHHHHH
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH------------cCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 899999987            34579999999


Q ss_pred             HcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHhhcCCCcccCCCC
Q psy138          198 HHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTA-LHCAASRGHRECLETLITLCGADVDVIDTN  276 (321)
Q Consensus       198 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  276 (321)
                      ++|.+.... ..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|++ +|++++.++. 
T Consensus       150 ~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-  226 (285)
T 3kea_A          150 SEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-  226 (285)
T ss_dssp             TTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-
T ss_pred             hCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-
Confidence            999876322 278999999999999999999999999999999999998 999999999999999999 7999999883 


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q psy138          277 GCSALFYAVTLGHADATTLLLQYGATPNRQDRKG  310 (321)
Q Consensus       277 g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g  310 (321)
                            .|+..|+.+++++|+++|++++......
T Consensus       227 ------~a~~~~~~~iv~~Ll~~g~~~~~~~~~~  254 (285)
T 3kea_A          227 ------ENVLLDDAEIAKMIIEKHVEYKSDSYTK  254 (285)
T ss_dssp             ------GGGTTTCHHHHHHHHHHHHHHTTCTTTT
T ss_pred             ------hhhhcCCHHHHHHHHHcCCCCCCccccc
Confidence                  5577999999999999999877655433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.1e-43  Score=285.56  Aligned_cols=249  Identities=20%  Similarity=0.170  Sum_probs=194.0

Q ss_pred             ccccChhHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHH
Q psy138           27 NTMEGATSLMYAAQQGKDAEVKAILASRPN--AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLH  104 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  104 (321)
                      .+.+|.||||+|++.|+.+++++|++.+..  .++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            356699999999999999999999988765  3788899999999999999999999999999988 6788899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccC-------------CCCCCcHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCCchhh
Q psy138          105 LAAIAGNVPLIHTLLAHRANVNSQ-------------DNEGHSVVHWATVCGEV-EALETVLSAGAEPSTPDIHGGYPIH  170 (321)
Q Consensus       105 ~A~~~~~~~~v~~Ll~~~~~~~~~-------------~~~~~t~l~~a~~~~~~-~i~~~L~~~~~~~~~~~~~~~~~l~  170 (321)
                      +|+..|+.+++++|+++|++....             ...+.++++.+...+.. .....+...+.+++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            999999999999999998764322             12344566555554433 3444455567778889999999999


Q ss_pred             hHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCC-CCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHH
Q psy138          171 YASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDK-DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC  249 (321)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  249 (321)
                      +|+.            ..+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus       164 ~A~~------------~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          164 VAVI------------HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (282)
T ss_dssp             HHHH------------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHH------------cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH
Confidence            9997            3458999999999999999885 49999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC
Q psy138          250 AASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH  289 (321)
Q Consensus       250 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  289 (321)
                      |+..++.+++++|++ +|++++.++..|.||+++|.....
T Consensus       232 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          232 ALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHTSSCHHHHHHHHH-TTCCCCCCC---------------
T ss_pred             HHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCccc
Confidence            999999999999999 799999999999999999986553

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.8e-42  Score=270.76  Aligned_cols=197  Identities=26%  Similarity=0.346  Sum_probs=169.1

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      +..|.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+.. ++..+..|.||||+|+
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~  117 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAA  117 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            466999999999999999999999999886666667799999999999999999999999887 6778899999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccch
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE-VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV  186 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (321)
                      ..|+.+++++|+++|++++..+..|.|||++|+..+. .+++++|++.|++                             
T Consensus       118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-----------------------------  168 (240)
T 3eu9_A          118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-----------------------------  168 (240)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-----------------------------
T ss_pred             HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-----------------------------
Confidence            9999999999999999999999999999999996654 5555555555544                             


Q ss_pred             hhhHHHHHHHHHcCCCCcccCC-CCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy138          187 RVGLAVLKVLLHHNVDVNVVDK-DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL  265 (321)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  265 (321)
                                      ++..+. .|.||||.|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|++ 
T Consensus       169 ----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-  231 (240)
T 3eu9_A          169 ----------------VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE-  231 (240)
T ss_dssp             ----------------TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-
T ss_pred             ----------------cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-
Confidence                            444443 67789999999999999999999999999999999999999999999999999998 


Q ss_pred             cCCCcc
Q psy138          266 CGADVD  271 (321)
Q Consensus       266 ~~~~~~  271 (321)
                      .+.+..
T Consensus       232 ~~~~~~  237 (240)
T 3eu9_A          232 ARQAKG  237 (240)
T ss_dssp             HC----
T ss_pred             hhhccC
Confidence            465543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-42  Score=271.17  Aligned_cols=216  Identities=26%  Similarity=0.308  Sum_probs=157.9

Q ss_pred             CcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q psy138           76 TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG  155 (321)
Q Consensus        76 ~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~  155 (321)
                      |+.+++++|++++..+....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            34455555555555543334555555555555555555555555555555555555555555555555555555555555


Q ss_pred             C-CCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCC
Q psy138          156 A-EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA  234 (321)
Q Consensus       156 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  234 (321)
                      . +++..+..|.||++.|+.            ....+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAAR------------LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHH------------HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcccCCCCCCcHHHHHHH------------hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            4 455555555555555554            223456666666666677777888999999999999999999999999


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       235 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      +++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||+++|++.++.+++++|+++|+...
T Consensus       150 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          150 NKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999 699999999999999999999999999999999998643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-43  Score=279.71  Aligned_cols=211  Identities=24%  Similarity=0.307  Sum_probs=171.9

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--------CccCCCCCCcHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCC
Q psy138           94 AADEDGYTPLHLAAIAGNVPLIHTLLAHRAN--------VNSQDNEGHSVVHWATVCGEV-EALETVLSAGAEPSTPDIH  164 (321)
Q Consensus        94 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~--------~~~~~~~~~t~l~~a~~~~~~-~i~~~L~~~~~~~~~~~~~  164 (321)
                      ..|..+.+||+.|+..|+.++|++|++.|++        ++..+..+.|||+.|+..+.. .++++|++.|++++..+..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            4566678999999999999999999998775        455677889999999987765 5889999999999999999


Q ss_pred             CCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCC
Q psy138          165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL  244 (321)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~  244 (321)
                      |.||||+|+..            .+.+++++|++.+++++..+..|.||++.|+..++.+++++|+++|++++.+|..|.
T Consensus        86 G~TpLh~A~~~------------g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~  153 (269)
T 4b93_B           86 GSSPLHVAALH------------GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGN  153 (269)
T ss_dssp             SCCHHHHHHHT------------TCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCHHHHHHHc------------CcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCC
Confidence            99999999974            346899999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       245 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|||++.+|..|+||||++
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999 7999999999999999999999999999999999999999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.8e-42  Score=269.43  Aligned_cols=219  Identities=24%  Similarity=0.369  Sum_probs=202.6

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhC--CccccccCCCCCcHHHHHHH
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA--PDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~l~~A~~  108 (321)
                      |.||||.|++.|+.+++++|++.++.....++..|.||||+|+..|+.+++++|++++  .......+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999998877778999999999999999999999999998  55333378899999999999


Q ss_pred             hCCHHHHHHHHHcC--CCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccch
Q psy138          109 AGNVPLIHTLLAHR--ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV  186 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~--~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (321)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..           
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-----------  150 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-----------  150 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-----------
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc-----------
Confidence            99999999999998  88999999999999999999999999999999999999999999999999973           


Q ss_pred             hhhHHHHHHHHHcC-CCCcccCCCCCchhHHHHhcCCHHHHHHHH-HcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          187 RVGLAVLKVLLHHN-VDVNVVDKDGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       187 ~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                       .+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||+++|+..   ++.++|++
T Consensus       151 -~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          151 -GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             -TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             -CCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence             4579999999999 999999999999999999999999999999 89999999999999999999654   56677765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.3e-42  Score=272.17  Aligned_cols=218  Identities=19%  Similarity=0.232  Sum_probs=190.9

Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHH
Q psy138           60 ERDRTRKTVLHYCAENTILSCAETILEVAPD---LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVV  136 (321)
Q Consensus        60 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l  136 (321)
                      .+|..|.||||+|+..|+.+++++|++.+..   .++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            4577899999999999999999999887653   3677888899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH
Q psy138          137 HWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW  216 (321)
Q Consensus       137 ~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  216 (321)
                      |+|+..|+.+++++|++.+.++...                                       ..++..+..|.||||+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~---------------------------------------~~~~~~~~~g~t~L~~  123 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH---------------------------------------SILKATNYNGHTCLHL  123 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS---------------------------------------CGGGCCCTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH---------------------------------------HHhhccCCCCCCHHHH
Confidence            9999999999999999987764321                                       1134566789999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy138          217 AASAGSSDAILALVKAGANVEAHDK-DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTL  295 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  295 (321)
                      |+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++
T Consensus       124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHH
Confidence            9999999999999999999999997 99999999999999999999999 699999999999999999999999999999


Q ss_pred             HHHcCCCCC--ccCCCCCccceee
Q psy138          296 LLQYGATPN--RQDRKGRTYEYQW  317 (321)
Q Consensus       296 Ll~~ga~~~--~~~~~g~t~l~~~  317 (321)
                      |+++|+++.  .++..|.||.+..
T Consensus       203 Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          203 LGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             HHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             HHHcchhhhhcCCccchHHHHhhh
Confidence            999999876  9999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-40  Score=260.95  Aligned_cols=216  Identities=22%  Similarity=0.282  Sum_probs=183.6

Q ss_pred             CCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy138           42 GKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAH  121 (321)
Q Consensus        42 g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  121 (321)
                      |+.+++++|++.+.......|..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5667778888877765555578888888888888888888888888777 567778888888888888888888888888


Q ss_pred             CC-CCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcC
Q psy138          122 RA-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHN  200 (321)
Q Consensus       122 ~~-~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (321)
                      +. +++..+..|.|||++|+..++.+++++|++.|++++..+..|.||+|+|+.            ..+.+++++|+++|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------~~~~~~v~~Ll~~g  148 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA------------VNNVDAAVVLLKNG  148 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------TTCHHHHHHHHHTT
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHH------------cCCHHHHHHHHHcC
Confidence            76 777888888888888888888888888888888888888888888888886            33478888888889


Q ss_pred             CCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy138          201 VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVD  271 (321)
Q Consensus       201 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  271 (321)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|++ +|+...
T Consensus       149 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~~  218 (223)
T 2f8y_A          149 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVRS  218 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSSC
T ss_pred             CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCCcc
Confidence            8999889999999999999999999999999999999999999999999999999999999999 687644

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-42  Score=286.29  Aligned_cols=253  Identities=16%  Similarity=0.120  Sum_probs=202.3

Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccc-----------------cCCCCCcHH
Q psy138           41 QGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEA-----------------ADEDGYTPL  103 (321)
Q Consensus        41 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----------------~~~~~~t~l  103 (321)
                      ....+++++|++.+.. ++.++..|.|+++     |+.++++.|++++.+. +.                 ......+..
T Consensus        29 ~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred             hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhcccccccccccCCccchh
Confidence            4555778888887766 8888999999988     9999999999987552 11                 111122345


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCcc-CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccccc
Q psy138          104 HLAAIAGNVPLIHTLLAHRANVNS-QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM  182 (321)
Q Consensus       104 ~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  182 (321)
                      |+|+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+....     
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~-----  176 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN-----  176 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH-----
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc-----
Confidence            788888889999999999999999 89999999999999999999999999999999999999999999997422     


Q ss_pred             ccchhhhHHHHHHHHHcC-CCCcccCCCCCchhHHHHh----cCCHHHHHHHHHc--------------------CCCcc
Q psy138          183 GNDVRVGLAVLKVLLHHN-VDVNVVDKDGRQPILWAAS----AGSSDAILALVKA--------------------GANVE  237 (321)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~  237 (321)
                          ....++++.|++.+ .+++..+..|.||||+|+.    .|+.+++++|++.                    |++++
T Consensus       177 ----~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~  252 (327)
T 1sw6_A          177 ----NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN  252 (327)
T ss_dssp             ----HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred             ----cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence                01134556666654 6789999999999999999    8999999999987                    89999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          238 AHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       238 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ..+..|.||||.|+.      +++|++.   +++.+|..|+||||+|+..|+.+++++|+++||+++.+|..|+||||++
T Consensus       253 ~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          253 DKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             -------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             cccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999999985      8999994   6899999999999999999999999999999999999999999999986


Q ss_pred             c
Q psy138          318 R  318 (321)
Q Consensus       318 ~  318 (321)
                      -
T Consensus       324 ~  324 (327)
T 1sw6_A          324 A  324 (327)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.7e-40  Score=268.00  Aligned_cols=215  Identities=16%  Similarity=0.148  Sum_probs=196.9

Q ss_pred             CcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q psy138           76 TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG  155 (321)
Q Consensus        76 ~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~  155 (321)
                      ...++.++|.+.+   ++..|..|.||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.+++++|+++|
T Consensus        11 ~~~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           11 KSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             CHHHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            4456666665542   5788999999999999999999999999999999887  4899999999999999999999999


Q ss_pred             CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCC-CchhHHHHhcCCHHHHHHHHHcCC
Q psy138          156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDG-RQPILWAASAGSSDAILALVKAGA  234 (321)
Q Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~  234 (321)
                      ++++..+..|.||+|+|+.            ..+.+++++|+++|++++..+..| .||||.|+..|+.+++++|+++|+
T Consensus        86 a~~~~~d~~g~t~L~~A~~------------~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           86 LDDSQFDDKGNTALYYAVD------------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHH------------TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             CCCCCcCCCCCcHHHHHHH------------cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            9999999999999999997            345899999999999999999999 899999999999999999999998


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccCCC
Q psy138          235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA-LFYAVTLGHADATTLLLQYGATPNRQDRK  309 (321)
Q Consensus       235 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~  309 (321)
                      +.... ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|| ||+|+..++.+++++|+++|++++.+|..
T Consensus       154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~  227 (285)
T 3kea_A          154 STFDL-AILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLE  227 (285)
T ss_dssp             TTCCC-STHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGG
T ss_pred             ccccc-cCCccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChh
Confidence            87332 389999999999999999999999 699999999999998 99999999999999999999999999863

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.6e-37  Score=238.09  Aligned_cols=193  Identities=24%  Similarity=0.347  Sum_probs=164.9

Q ss_pred             cCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhc
Q psy138           63 RTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC  142 (321)
Q Consensus        63 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~  142 (321)
                      ..+.||||.|+..|+.+.++.|++.++..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45778888888888888888888877755677778888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC
Q psy138          143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS  222 (321)
Q Consensus       143 ~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  222 (321)
                      |+.+++++|++.                                            .+.+++..+..|.||||.|+..|+
T Consensus        83 ~~~~~~~~Ll~~--------------------------------------------~~~~~~~~~~~g~t~L~~A~~~~~  118 (201)
T 3hra_A           83 GRTEILAYMLKH--------------------------------------------ATPDLNKHNRYGGNALIPAAEKGH  118 (201)
T ss_dssp             TCHHHHHHHHHH--------------------------------------------SCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred             CCHHHHHHHHhc--------------------------------------------cCcccccccCCCCcHHHHHHHcCC
Confidence            888877777742                                            223455566778889999999999


Q ss_pred             HHHHHHHHHcC-CCcccccCCCCcHHHHHHHcCC-----HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy138          223 SDAILALVKAG-ANVEAHDKDGLTALHCAASRGH-----RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL  296 (321)
Q Consensus       223 ~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  296 (321)
                      .+++++|+++| ++++..+..|.||||+|+..++     .+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence            99999999999 8999999999999999999998     999999999 6999999999999999999999999999999


Q ss_pred             HHcC
Q psy138          297 LQYG  300 (321)
Q Consensus       297 l~~g  300 (321)
                      +++|
T Consensus       198 l~~G  201 (201)
T 3hra_A          198 AQYN  201 (201)
T ss_dssp             HTCC
T ss_pred             HhcC
Confidence            9987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=6.9e-39  Score=258.63  Aligned_cols=223  Identities=17%  Similarity=0.187  Sum_probs=145.5

Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHHh----CCcccc---ccCCCCCcHHHHHHHh---CCHHHHHHHHHcCCC------
Q psy138           61 RDRTRKTVLHYCAENTILSCAETILEV----APDLIE---AADEDGYTPLHLAAIA---GNVPLIHTLLAHRAN------  124 (321)
Q Consensus        61 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~---~~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~------  124 (321)
                      .|..|.||||.|++.|+.++++.|++.    +..+..   ..+..|.||||+|+..   |+.+++++|+++|++      
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            344444555555555555444444442    111100   2234455555555543   455555555554432      


Q ss_pred             -----CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHc
Q psy138          125 -----VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH  199 (321)
Q Consensus       125 -----~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (321)
                           ....+..|.||||+|+..|+.+++++|+++|++++..+..+...                               
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-------------------------------  137 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK-------------------------------  137 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS-------------------------------
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc-------------------------------
Confidence                 11234567777777777777777777777777766655432100                               


Q ss_pred             CCCCcccCCCCCchhHHHHhcCCHHHHHHHHH---cCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHhhcC
Q psy138          200 NVDVNVVDKDGRQPILWAASAGSSDAILALVK---AGANVEAHDKDGLTALHCAASRGH---------RECLETLITLCG  267 (321)
Q Consensus       200 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~  267 (321)
                      ..+....+..|.||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+..++         .+++++|++ .|
T Consensus       138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~g  216 (273)
T 2pnn_A          138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LG  216 (273)
T ss_dssp             SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hh
Confidence            01234456789999999999999999999999   999999999999999999999998         899999999 69


Q ss_pred             CCcc-------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCccce
Q psy138          268 ADVD-------VIDTNGCSALFYAVTLGHADATTLLLQYGA-TPNRQDRKGRTYEY  315 (321)
Q Consensus       268 ~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga-~~~~~~~~g~t~l~  315 (321)
                      ++++       .+|..|.||||+|+..|+.+++++|+++|| |+......+.+|-+
T Consensus       217 a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9997       489999999999999999999999999999 89888888877643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.5e-38  Score=254.26  Aligned_cols=206  Identities=20%  Similarity=0.200  Sum_probs=143.8

Q ss_pred             CccHHHHHHHcCcHH----HHHHHHHhCCccccc----cCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCcc------
Q psy138           65 RKTVLHYCAENTILS----CAETILEVAPDLIEA----ADEDGYTPLHLAAIA---GNVPLIHTLLAHRANVNS------  127 (321)
Q Consensus        65 g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~----~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~------  127 (321)
                      |.||||.|+..|+.+    ++++|++.+.+ ++.    .+..|.||||+|+..   |+.+++++|+++|++++.      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            344444444444443    33333334443 222    344444555555544   445555555544443331      


Q ss_pred             -----CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCC
Q psy138          128 -----QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVD  202 (321)
Q Consensus       128 -----~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (321)
                           .+..|.||||+|+..|+.+++++|+++|++++..+..+..+                                .+
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~--------------------------------~~  128 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ--------------------------------KH  128 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS--------------------------------CC
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc--------------------------------cc
Confidence                 22456666666666666666666666666665554433211                                12


Q ss_pred             CcccCCCCCchhHHHHhcCCHHHHHHHHH---cCCCcccccCCCCcHHHHHHH--cCCHH-------HHHHHHhhcCCCc
Q psy138          203 VNVVDKDGRQPILWAASAGSSDAILALVK---AGANVEAHDKDGLTALHCAAS--RGHRE-------CLETLITLCGADV  270 (321)
Q Consensus       203 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~  270 (321)
                      .+..+..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|++ .|+++
T Consensus       129 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~  207 (256)
T 2etb_A          129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARL  207 (256)
T ss_dssp             SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCc
Confidence            23345569999999999999999999999   999999999999999999999  88888       9999999 69999


Q ss_pred             -------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          271 -------DVIDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       271 -------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                             +.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       208 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             STTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence                   9999999999999999999999999999997654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-39  Score=269.47  Aligned_cols=253  Identities=20%  Similarity=0.203  Sum_probs=193.4

Q ss_pred             ceehhhccCCCcccccCcccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccc-----------------cccCC
Q psy138            3 DVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRE-----------------RDRTR   65 (321)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-----------------~~~~g   65 (321)
                      +++++|++++...        +. .+..|.++++     |+.++++.||+.+... +.                 +....
T Consensus        33 dlv~~ll~~ga~i--------~~-~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~~~~~~~~~~   97 (327)
T 1sw6_A           33 DLTSDFLSSPLKI--------MK-ALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSNRNSEGGSSN   97 (327)
T ss_dssp             TCCCSTTTSSCCC--------EE-CBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------
T ss_pred             chHHHHhhCCccc--------cc-CCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhcccccccccccCCc
Confidence            4566666664322        21 1234777776     9999999999987441 11                 11122


Q ss_pred             ccHHHHHHHcCcHHHHHHHHHhCCccccc-cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           66 KTVLHYCAENTILSCAETILEVAPDLIEA-ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        66 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      .+..|.|+..+..+++++|++.+.+ ++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus        98 ~~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A           98 QQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ------CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cchhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence            2345888888889999999999888 566 89999999999999999999999999999999999999999999999998


Q ss_pred             ---HHHHHHHHHcC-CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHc--------------------C
Q psy138          145 ---VEALETVLSAG-AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH--------------------N  200 (321)
Q Consensus       145 ---~~i~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------~  200 (321)
                         .++++.|++.+ .+++..+..|.||||+|+.....        ..+.+++++|++.                    +
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~--------~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g  248 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM--------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE  248 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS--------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc--------cccHHHHHHHHHHHHHHHhcccchHHHhhhhccc
Confidence               68888888876 67888999999999999874221        2347888888876                    8


Q ss_pred             CCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcH
Q psy138          201 VDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA  280 (321)
Q Consensus       201 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  280 (321)
                      ++++..+..|.||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus       249 ~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          249 SKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRP  319 (327)
T ss_dssp             -----------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCG
T ss_pred             CCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCH
Confidence            8999999999999999985      8999988  588899999999999999999999999999 799999999999999


Q ss_pred             HHHHHHcC
Q psy138          281 LFYAVTLG  288 (321)
Q Consensus       281 l~~A~~~~  288 (321)
                      ||+|++.|
T Consensus       320 L~~A~~~g  327 (327)
T 1sw6_A          320 VDFGAGLE  327 (327)
T ss_dssp             GGGTCC--
T ss_pred             HHHHHhcC
Confidence            99998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.6e-36  Score=233.68  Aligned_cols=190  Identities=22%  Similarity=0.297  Sum_probs=160.5

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      ..+.||||.|+..|+.+.+++++..++.+++..+..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            35889999999999999999999999977999999999999999999999999999999988 67888999999999999


Q ss_pred             hCCHHHHHHHH-HcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCchhhhHhhhcccccccccch
Q psy138          109 AGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG-AEPSTPDIHGGYPIHYASQMCGHASEMGNDV  186 (321)
Q Consensus       109 ~~~~~~v~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (321)
                      .|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.| .+++..+..                      
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~----------------------  139 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF----------------------  139 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT----------------------
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC----------------------
Confidence            99999999999 567799999999999999999999999999999887 555554444                      


Q ss_pred             hhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC-----HHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHH
Q psy138          187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS-----SDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLET  261 (321)
Q Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  261 (321)
                                             |.||||.|+..++     .+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus       140 -----------------------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~  196 (201)
T 3hra_A          140 -----------------------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI  196 (201)
T ss_dssp             -----------------------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             -----------------------CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence                                   4555555555554     667777777777777777777777777777777777777


Q ss_pred             HHh
Q psy138          262 LIT  264 (321)
Q Consensus       262 Ll~  264 (321)
                      |++
T Consensus       197 Ll~  199 (201)
T 3hra_A          197 LAQ  199 (201)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            766

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.7e-38  Score=250.92  Aligned_cols=213  Identities=21%  Similarity=0.249  Sum_probs=167.2

Q ss_pred             ccccChhHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHH
Q psy138           27 NTMEGATSLMYAAQQGKDAEVKAILASRPN---AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPL  103 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  103 (321)
                      .+.+|.||||+|+..|+.+++++|++.+..   .++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence            456799999999999999999999988764   5888899999999999999999999999999988 678889999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCC------CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138          104 HLAAIAGNVPLIHTLLAHRAN------VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus       104 ~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      |+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++..+.              
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------  148 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP--------------  148 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT--------------
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------
Confidence            999999999999999999876      466777899999999999988888888887766654432              


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                                                    ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus       149 ------------------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          149 ------------------------------CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR  198 (236)
T ss_dssp             ------------------------------TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             ------------------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH
Confidence                                          14666667777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhcCCCcc--cCCCCCCcHHHHHH
Q psy138          258 CLETLITLCGADVD--VIDTNGCSALFYAV  285 (321)
Q Consensus       258 ~~~~Ll~~~~~~~~--~~~~~g~t~l~~A~  285 (321)
                      ++++|++ +|++..  .++..|.||.+.+.
T Consensus       199 ~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          199 IQQQLGQ-LTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             HHHHHHT-TSCGGGSSCCCCCTTTCCCCC-
T ss_pred             HHHHHHH-cchhhhhcCCccchHHHHhhhc
Confidence            7777777 576655  55666666655443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=7.8e-37  Score=227.06  Aligned_cols=159  Identities=36%  Similarity=0.545  Sum_probs=134.0

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc
Q psy138          101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       101 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      ++|+.|++.|+.++|++|+++|++++.++..|.|||++|+..++.+++++|++.|++                       
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----------------------   62 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----------------------   62 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----------------------
Confidence            467888888888888888888888888888888888888888777777766665554                       


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                            ++..+..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++++
T Consensus        63 ----------------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  120 (169)
T 4gpm_A           63 ----------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK  120 (169)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ----------------------hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                                  4455667888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNR  305 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~  305 (321)
                      +|++ .|++++.+|..|.|||++|++.|+.+++++|+++||+++-
T Consensus       121 ~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          121 LLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            9999 6999999999999999999999999999999999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.8e-35  Score=219.70  Aligned_cols=159  Identities=33%  Similarity=0.503  Sum_probs=132.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      +.|+.||+.|+.++|++|++++.+ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            579999999999999999999988 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHH
Q psy138          147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAI  226 (321)
Q Consensus       147 i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  226 (321)
                      ++++|+++|++++.                                             ++..|.||||+|+..|+.+++
T Consensus        85 ~v~~Ll~~gadvn~---------------------------------------------~d~~G~TpLh~A~~~g~~~~v  119 (169)
T 4gpm_A           85 VVKLLISKGADVNA---------------------------------------------KDSDGRTPLHHAAENGHKEVV  119 (169)
T ss_dssp             HHHHHHHTTCCTTC---------------------------------------------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCcCCCCC---------------------------------------------CCCCCCCHHHHHHHcCCHHHH
Confidence            88888887766554                                             445566777777777777788


Q ss_pred             HHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy138          227 LALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV  272 (321)
Q Consensus       227 ~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  272 (321)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++.
T Consensus       120 ~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA~ie~  164 (169)
T 4gpm_A          120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGGWLEH  164 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C------
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCC
Confidence            88887787777777778888888888888888888777 5777653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-36  Score=245.40  Aligned_cols=215  Identities=19%  Similarity=0.247  Sum_probs=156.6

Q ss_pred             ccccChhHHHHHHHcCCHHHHHHHHHc---CCCccc----ccccCCccHHHHHHHc---CcHHHHHHHHHhCCcc-----
Q psy138           27 NTMEGATSLMYAAQQGKDAEVKAILAS---RPNAVR----ERDRTRKTVLHYCAEN---TILSCAETILEVAPDL-----   91 (321)
Q Consensus        27 ~~~~g~~~L~~A~~~g~~~~~~~ll~~---~~~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~-----   91 (321)
                      .+..|.||||.|++.|+.++++.|++.   .+..++    .++..|.||||+|+..   |+.+++++|++.++..     
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            345699999999999999999999873   222233    3578999999999987   9999999999987541     


Q ss_pred             -c----cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCC--------------CCCcHHHHHHhcCCHHHHHHHH
Q psy138           92 -I----EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDN--------------EGHSVVHWATVCGEVEALETVL  152 (321)
Q Consensus        92 -~----~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~i~~~L~  152 (321)
                       +    ...+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+++++|+
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence             1    22466899999999999999999999999999999886              7999999999999999999999


Q ss_pred             H---cCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCc-------ccCCCCCchhHHHHhcCC
Q psy138          153 S---AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN-------VVDKDGRQPILWAASAGS  222 (321)
Q Consensus       153 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~t~l~~a~~~~~  222 (321)
                      +   .|++++..+..|.||||+|+.......   .......+++++|++.|++++       ..+..|.||||+|+..|+
T Consensus       169 ~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~---~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          169 QNSWQPADISARDSVGNTVLHALVEVADNTV---DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hcccCCCCceeeCCCCCcHHHHHHHccCcch---hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9   999999999999999999987432100   000111456666666665554       245555555555555555


Q ss_pred             HHHHHHHHHcCC-CcccccCCCC
Q psy138          223 SDAILALVKAGA-NVEAHDKDGL  244 (321)
Q Consensus       223 ~~~~~~Ll~~~~-~~~~~~~~g~  244 (321)
                      .+++++|+++|+ |+......+.
T Consensus       246 ~~iv~~Ll~~ga~dp~~~~~~~~  268 (273)
T 2pnn_A          246 IGVLAYILQREIHEPECRHAAAH  268 (273)
T ss_dssp             HHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHCCCCCchhhhhhhh
Confidence            555555555555 4444333333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.1e-36  Score=240.86  Aligned_cols=202  Identities=16%  Similarity=0.213  Sum_probs=157.0

Q ss_pred             ChhHHHHHHHcCCHH----HHHHHHHcCCCcccc----cccCCccHHHHHHHc---CcHHHHHHHHHhCCcccc------
Q psy138           31 GATSLMYAAQQGKDA----EVKAILASRPNAVRE----RDRTRKTVLHYCAEN---TILSCAETILEVAPDLIE------   93 (321)
Q Consensus        31 g~~~L~~A~~~g~~~----~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~------   93 (321)
                      |.||||.|++.|+.+    +++++++.+.. ++.    +|..|.||||+|+..   |+.+++++|++.+.....      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            889999999999997    45555566655 676    799999999999999   999999999998765321      


Q ss_pred             ----ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCC-------------CCcHHHHHHhcCCHHHHHHHHH---
Q psy138           94 ----AADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-------------GHSVVHWATVCGEVEALETVLS---  153 (321)
Q Consensus        94 ----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~i~~~L~~---  153 (321)
                          ..+..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                23467999999999999999999999999999998876             9999999999999999999999   


Q ss_pred             cCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCC-------cccCCCCCchhHHHHhcCCHHHH
Q psy138          154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDV-------NVVDKDGRQPILWAASAGSSDAI  226 (321)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~  226 (321)
                      .|++++..+..|.||||+|+........   ......+++++|+++|+++       +..+..|.||||+|+..|+.+++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~---~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPE---NSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHH---HHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCch---hhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence            9999999999999999999873211000   0000112666666666666       55556666666666666666666


Q ss_pred             HHHHHcCCCc
Q psy138          227 LALVKAGANV  236 (321)
Q Consensus       227 ~~Ll~~~~~~  236 (321)
                      ++|+++|.+.
T Consensus       238 ~~Ll~~g~~~  247 (256)
T 2etb_A          238 RHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhCCCCC
Confidence            6666655443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.1e-35  Score=238.30  Aligned_cols=195  Identities=17%  Similarity=0.237  Sum_probs=153.0

Q ss_pred             CCCcHHHHHHHhCCHHH----HHHHHHcCCCCccCC----CCCCcHHHHHH---hcCCHHHHHHHHHcC-----------
Q psy138           98 DGYTPLHLAAIAGNVPL----IHTLLAHRANVNSQD----NEGHSVVHWAT---VCGEVEALETVLSAG-----------  155 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~----v~~Ll~~~~~~~~~~----~~~~t~l~~a~---~~~~~~i~~~L~~~~-----------  155 (321)
                      .+.++||.|+..|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|           
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            44555555555555553    223333555554333    44555555555   445555555555554           


Q ss_pred             CCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccC--------------CCCCchhHHHHhcC
Q psy138          156 AEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD--------------KDGRQPILWAASAG  221 (321)
Q Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~t~l~~a~~~~  221 (321)
                      ......+..|.||||+|+.            ..+.+++++|+++|++++..+              ..|.||||+|+..|
T Consensus        84 ~~~~~~d~~g~t~L~~A~~------------~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  151 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIE------------RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN  151 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHH------------TTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred             ccccccccCCCCHHHHHHH------------cCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence            3344556689999999987            445899999999999999988              68999999999999


Q ss_pred             CHHHHHHHHH---cCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHhhcCCCc-------ccCCCCCCcHHH
Q psy138          222 SSDAILALVK---AGANVEAHDKDGLTALHCAASRGH---------RECLETLITLCGADV-------DVIDTNGCSALF  282 (321)
Q Consensus       222 ~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~~g~t~l~  282 (321)
                      +.+++++|++   +|++++.+|..|.||||+|+..++         .+++++|++ .|+++       +.+|..|.||||
T Consensus       152 ~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHH
Confidence            9999999999   999999999999999999999888         799999999 69998       679999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCc
Q psy138          283 YAVTLGHADATTLLLQYGATPNR  305 (321)
Q Consensus       283 ~A~~~~~~~~~~~Ll~~ga~~~~  305 (321)
                      +|+..|+.+++++|+++|+++..
T Consensus       231 ~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHhCCCccc
Confidence            99999999999999999976543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=234.07  Aligned_cols=194  Identities=22%  Similarity=0.365  Sum_probs=163.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCC--CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCchhhhHhhhc
Q psy138          100 YTPLHLAAIAGNVPLIHTLLAHRAN--VNSQDNEGHSVVHWATVCGEVEALETVLSAGA-EPSTPDIHGGYPIHYASQMC  176 (321)
Q Consensus       100 ~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~-~~~~~~~~~~~~l~~~~~~~  176 (321)
                      .+++|.|+..++.+.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||++.++...
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            4566777777777777777666544  66677777777777777777777777777776 77777777777777776321


Q ss_pred             ccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCH
Q psy138          177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR  256 (321)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  256 (321)
                      .       ......+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus       157 ~-------~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          157 L-------KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             C-------CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             h-------hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            1       114567899999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          257 ECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       257 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      +++++|++..|++++.+|..|.|||++|+..|+.+++++|++++
T Consensus       230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999999669999999999999999999999999999999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=3.4e-34  Score=229.54  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=149.8

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHH----cCCCcccccc----cCCccHHHHHH---HcCcHHHHHHHHHhCCcc--------
Q psy138           31 GATSLMYAAQQGKDAEVKAILA----SRPNAVRERD----RTRKTVLHYCA---ENTILSCAETILEVAPDL--------   91 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~--------   91 (321)
                      |.++||.|++.|+.+.++.|++    .+.. ++..+    ..|.||||+|+   ..|+.+++++|++.+...        
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            6777888888888775555544    4443 44333    56777777777   567777777777765331        


Q ss_pred             --ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchh
Q psy138           92 --IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPI  169 (321)
Q Consensus        92 --~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l  169 (321)
                        ....+..|.||||+|+..|+.+++++|+++|++++..+..+..                   ...+....+..|.|||
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~~~~~~g~tpL  144 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------QPKDEGGYFYFGELPL  144 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-------------------SSSCCCCSCCSCSSHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-------------------CcccccccccCCCCHH
Confidence              1222335566666666666666666666666665554432100                   0012222336789999


Q ss_pred             hhHhhhcccccccccchhhhHHHHHHHHH---cCCCCcccCCCCCchhHHHHhcCC---------HHHHHHHHHcCCCc-
Q psy138          170 HYASQMCGHASEMGNDVRVGLAVLKVLLH---HNVDVNVVDKDGRQPILWAASAGS---------SDAILALVKAGANV-  236 (321)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~-  236 (321)
                      |+|+.            ..+.+++++|++   .|++++..+..|.||||+|+..++         .+++++|+++|+++ 
T Consensus       145 ~~A~~------------~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          145 SLAAC------------TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             HHHHH------------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHH------------cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            99987            345899999999   999999999999999999998887         79999999999998 


Q ss_pred             ------ccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy138          237 ------EAHDKDGLTALHCAASRGHRECLETLITLCGADVD  271 (321)
Q Consensus       237 ------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  271 (321)
                            +..|..|.||||+|+..|+.+++++|++ +|.+..
T Consensus       213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~  252 (260)
T 3jxi_A          213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR-REIADA  252 (260)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHHHH
T ss_pred             cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCCcc
Confidence                  6789999999999999999999999999 465543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.6e-33  Score=211.35  Aligned_cols=169  Identities=24%  Similarity=0.371  Sum_probs=142.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCC-CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           99 GYTPLHLAAIAGNVPLIHTLLAHRAN-VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        99 ~~t~l~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      +.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|+++                   
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------   62 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-------------------   62 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-------------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------------
Confidence            35788888888888888888888776 7777888888888888888888777777765554                   


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                                                +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus        63 --------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  116 (172)
T 3v30_A           63 --------------------------HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK  116 (172)
T ss_dssp             --------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             --------------------------hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence                                      444566778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcc
Q psy138          258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY  313 (321)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~  313 (321)
                      ++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|+++..++..|.||
T Consensus       117 ~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          117 CVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999 699999999999999999999999999999999999999999999988

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=227.09  Aligned_cols=192  Identities=23%  Similarity=0.321  Sum_probs=177.0

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCc-cccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CCccCCCCCCcHHHHHH-
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPD-LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA-NVNSQDNEGHSVVHWAT-  140 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~t~l~~a~-  140 (321)
                      .+.+++|.|+..++.+.++.+++...+ .++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.|||++|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            356788999999999999999887543 357788999999999999999999999999998 99999999999999999 


Q ss_pred             ----hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH
Q psy138          141 ----VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW  216 (321)
Q Consensus       141 ----~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  216 (321)
                          ..++.+++++|++.|......+..|.||||+|+..            ...+++++|++.|++++..+..|.||||+
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~------------g~~~~v~~Ll~~gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH------------GRVDVVKALLACEADVNVQDDDGSTALMC  222 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc------------CCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence                67889999999999999999999999999999974            45899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcC
Q psy138          217 AASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLETLITLCG  267 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  267 (321)
                      |+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++..+
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999 899999999999999999999999999999999644

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.2e-33  Score=211.89  Aligned_cols=163  Identities=27%  Similarity=0.419  Sum_probs=140.2

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhh
Q psy138           92 IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHY  171 (321)
Q Consensus        92 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~  171 (321)
                      .+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|+++             
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------   94 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-------------   94 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-------------
Confidence            4566788899999999999999999999988888888888899999998888888888777766554             


Q ss_pred             HhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy138          172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAA  251 (321)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~  251 (321)
                                                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        95 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  142 (192)
T 2rfm_A           95 --------------------------------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS  142 (192)
T ss_dssp             --------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             --------------------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence                                            344556778888888888999999999999999988999999999999


Q ss_pred             HcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          252 SRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       252 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      ..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++|+++|
T Consensus       143 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          143 KYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999998 69999999999999999999999999999998875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=8.5e-33  Score=207.37  Aligned_cols=170  Identities=21%  Similarity=0.292  Sum_probs=110.6

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      +.||||.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            34677777777777777777777766566667777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHH
Q psy138          145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD  224 (321)
Q Consensus       145 ~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  224 (321)
                      .+++++|+++|++++                                             ..+..|.||||+|+..|+.+
T Consensus        82 ~~~v~~Ll~~g~~~~---------------------------------------------~~~~~g~t~L~~A~~~~~~~  116 (172)
T 3v30_A           82 TDIVGLLLERDVDIN---------------------------------------------IYDWNGGTPLLYAVRGNHVK  116 (172)
T ss_dssp             HHHHHHHHTTTCCTT---------------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCCC---------------------------------------------CCCCCCCCHHHHHHHcCCHH
Confidence            776666666554433                                             23344556666666666666


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcH
Q psy138          225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA  280 (321)
Q Consensus       225 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  280 (321)
                      ++++|+++|++++..+..|.||||+|+..++.+++++|++ +++++..++..|.||
T Consensus       117 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHHHSCC-------
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH-HHHHHhcccCCCCCC
Confidence            6666666666666666666677777777777777777666 466666666666555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.8e-32  Score=203.56  Aligned_cols=158  Identities=29%  Similarity=0.355  Sum_probs=130.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      ...|||+.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++                    
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~--------------------   62 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN--------------------   62 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC--------------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC--------------------
Confidence            34567777777777777777777777777777777777777766 776666666665544                    


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                                               ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus        63 -------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  117 (162)
T 1ihb_A           63 -------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR  117 (162)
T ss_dssp             -------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             -------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence                                     4455566788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          258 CLETLITLCGAD-VDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       258 ~~~~Ll~~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      ++++|++ .|++ ++.++..|.||||+|+..++.+++++|+++|||
T Consensus       118 ~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          118 VVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999 5877 699999999999999999999999999999986

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.9e-32  Score=207.47  Aligned_cols=162  Identities=25%  Similarity=0.365  Sum_probs=143.7

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHH
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVH  137 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~  137 (321)
                      ++.+|..|.||||+|+..|+.+++++|++++.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            667889999999999999999999999999887 6788889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHH
Q psy138          138 WATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA  217 (321)
Q Consensus       138 ~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  217 (321)
                      +|+..++.+++++|+++|++++                                             ..+..|.||||+|
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~---------------------------------------------~~~~~g~t~L~~A  141 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVN---------------------------------------------DRNLEGETPLIVA  141 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSS---------------------------------------------CCCTTCCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC---------------------------------------------CCCCCCCCHHHHH
Confidence            9999999988888887766544                                             4455677788888


Q ss_pred             HhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy138          218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITL  265 (321)
Q Consensus       218 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  265 (321)
                      +..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|++.
T Consensus       142 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          142 SKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            888888888888888888888888888888888888888888888873

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.7e-32  Score=202.13  Aligned_cols=159  Identities=36%  Similarity=0.478  Sum_probs=136.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhh
Q psy138           96 DEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM  175 (321)
Q Consensus        96 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~  175 (321)
                      ...+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++                 
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------   73 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-----------------   73 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------
Confidence            345668888888888888888888888888888888888888888888888888777766554                 


Q ss_pred             cccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCC
Q psy138          176 CGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH  255 (321)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  255 (321)
                                                  +..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        74 ----------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  125 (169)
T 2y1l_E           74 ----------------------------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH  125 (169)
T ss_dssp             ----------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ----------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence                                        3445567788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       256 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      .+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|
T Consensus       126 ~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          126 LEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999 69999999999999999999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.2e-32  Score=203.18  Aligned_cols=161  Identities=25%  Similarity=0.403  Sum_probs=139.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      .|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++                  
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------------
Confidence            46788888888888888888888888888888888888888888888888887777665543                  


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                                                 ..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        64 ---------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  116 (167)
T 3v31_A           64 ---------------------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK  116 (167)
T ss_dssp             ---------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ---------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence                                       34556778888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      ++++|++ .|++++.++..|.||+++|+..|+.+++++|+++++++.
T Consensus       117 ~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          117 CVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999 699999999999999999999999999999999886543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.8e-31  Score=201.39  Aligned_cols=168  Identities=20%  Similarity=0.299  Sum_probs=155.0

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .++.++|+.|++.|+.+++++|++.++.+++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            34789999999999999999999998888999999999999999999999999999999988 68888999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      .|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+.            ..
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------------~~  149 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA------------PL  149 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH------------HH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH------------HH
Confidence            999999999999999999999999999999999999999999999999999999999999999976            45


Q ss_pred             hHHHHHHHHHcCCCCcccCCC
Q psy138          189 GLAVLKVLLHHNVDVNVVDKD  209 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~  209 (321)
                      ..+++++|++.|.+++..+..
T Consensus       150 ~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          150 RELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             HHHHHHHHHHTTCCCSCBCCC
T ss_pred             HHHHHHHHHHhhcCcccCCcc
Confidence            578999999999998876544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.3e-31  Score=198.86  Aligned_cols=159  Identities=30%  Similarity=0.456  Sum_probs=137.5

Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH
Q psy138           60 ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA  139 (321)
Q Consensus        60 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  139 (321)
                      .....+.++|+.|++.|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            3445678999999999999999999999987 678889999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHh
Q psy138          140 TVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS  219 (321)
Q Consensus       140 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  219 (321)
                      +..|+.+++++|+++|++++.                                             .+..|.||||+|+.
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~---------------------------------------------~~~~g~t~L~~A~~  122 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNA---------------------------------------------NDMEGHTPLHLAAM  122 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC---------------------------------------------CCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCC---------------------------------------------CCCCCCCHHHHHHH
Confidence            999999988888887665543                                             44556778888888


Q ss_pred             cCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          220 AGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       220 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      .|+.+++++|+++|++++.++..|.||+++|+..++.+++++|++
T Consensus       123 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            888888888888888888888888888888888888888888887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.2e-31  Score=199.15  Aligned_cols=158  Identities=27%  Similarity=0.334  Sum_probs=132.5

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG  143 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  143 (321)
                      ...||||.|+..|+.+++++|++++.. ++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            467999999999999999999999887 68889999999999999 9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH
Q psy138          144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS  223 (321)
Q Consensus       144 ~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  223 (321)
                      +.+++++|+++|++++.                                             .+..|.||||+|+..|+.
T Consensus        82 ~~~~v~~Ll~~g~~~~~---------------------------------------------~~~~g~t~L~~A~~~~~~  116 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNI---------------------------------------------EDNEGNLPLHLAAKEGHL  116 (162)
T ss_dssp             CHHHHHHHHHTTCCTTC---------------------------------------------CCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHHHcCCCCCC---------------------------------------------cCCCCCCHHHHHHHcCCH
Confidence            99988888887666544                                             444566777777777777


Q ss_pred             HHHHHHHHcCCC-cccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCC
Q psy138          224 DAILALVKAGAN-VEAHDKDGLTALHCAASRGHRECLETLITLCGAD  269 (321)
Q Consensus       224 ~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  269 (321)
                      +++++|+++|++ ++..+..|.||||+|+..|+.+++++|++ +|+|
T Consensus       117 ~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~GAd  162 (162)
T 1ihb_A          117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-NGAG  162 (162)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TC--
T ss_pred             HHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-hCCC
Confidence            888888877776 47777778888888888888888888887 5664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=1.1e-31  Score=202.56  Aligned_cols=168  Identities=24%  Similarity=0.322  Sum_probs=144.9

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhh
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM  175 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~  175 (321)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|+++                 
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------   65 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-----------------   65 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------
Confidence            3567888888888888888888887 5667888888888888888888887777777665554                 


Q ss_pred             cccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCC
Q psy138          176 CGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGH  255 (321)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  255 (321)
                                                  +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        66 ----------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  117 (179)
T 3f6q_A           66 ----------------------------NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ  117 (179)
T ss_dssp             ----------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ----------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence                                        4455667889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q psy138          256 RECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG  310 (321)
Q Consensus       256 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g  310 (321)
                      .+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|++++..+..+
T Consensus       118 ~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          118 DQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999 699999999999999999999999999999999999999888666

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=3.6e-31  Score=197.47  Aligned_cols=155  Identities=22%  Similarity=0.344  Sum_probs=136.5

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG  143 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  143 (321)
                      .|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            588999999999999999999999877 7888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH
Q psy138          144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS  223 (321)
Q Consensus       144 ~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  223 (321)
                      +.+++++|+++|++++                                             ..+..|.||||+|+..|+.
T Consensus        81 ~~~~v~~Ll~~g~~~~---------------------------------------------~~~~~g~t~L~~A~~~~~~  115 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVN---------------------------------------------EYDWNGGTPLLYAVHGNHV  115 (167)
T ss_dssp             CHHHHHHHHHHTCCTT---------------------------------------------CCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHHHCCCCCC---------------------------------------------cCCCCCCCHHHHHHHcCCH
Confidence            9998888887766544                                             3445567777778888888


Q ss_pred             HHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          224 DAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       224 ~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      +++++|+++|++++..+..|.||+|+|+..|+.+++++|++
T Consensus       116 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            88888888888888888888888888888888888888887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.98  E-value=1.1e-34  Score=227.09  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=72.5

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      .+|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            3455555555555555555555554433 444555555555555555555555555555444 34444555555555555


Q ss_pred             hCCHHHHHHHHHcCCCCccCC-CCCCcHHHHH--HhcCCHHHHHHHHHcCCCCCCCCCCCCchhh
Q psy138          109 AGNVPLIHTLLAHRANVNSQD-NEGHSVVHWA--TVCGEVEALETVLSAGAEPSTPDIHGGYPIH  170 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~  170 (321)
                      .|+.+++++|+++|++++..+ ..|.|||++|  +..++.+++++|++.|++++..+..+.++++
T Consensus        97 ~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           97 CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            555555555555555555443 3555555555  5555555555555555555555544444444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.98  E-value=1e-34  Score=227.17  Aligned_cols=201  Identities=17%  Similarity=0.183  Sum_probs=171.1

Q ss_pred             HHHHHHcCCCc--ccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q psy138           47 VKAILASRPNA--VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN  124 (321)
Q Consensus        47 ~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~  124 (321)
                      ++.||+.+...  .+..+..+.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            35677777553  344566778999999999999999999999987 688899999999999999999999999999999


Q ss_pred             CccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCchhhhH--hhhcccccccccchhhhHHHHHHHHHcCC
Q psy138          125 VNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPD-IHGGYPIHYA--SQMCGHASEMGNDVRVGLAVLKVLLHHNV  201 (321)
Q Consensus       125 ~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (321)
                      ++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||+++|  +.            ....+++++|++.|+
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~------------~~~~~~v~~Ll~~ga  147 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR------------EGYADCATYLADVEQ  147 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS------------TTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh------------cChHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999886 6999999998  54            456899999999999


Q ss_pred             CCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCC--cccccCCCCcHHHHHHHcCCHHHHHHHH
Q psy138          202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGAN--VEAHDKDGLTALHCAASRGHRECLETLI  263 (321)
Q Consensus       202 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  263 (321)
                      +++..+..+.+|++.++.....   ++|++.|++  ++.+|..|+||||+|+..|+.++++.++
T Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          148 SMGLMNSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             HTTTSGGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             CcccccCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            9999999999999976655433   577888988  6778999999999999999999887644

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.98  E-value=2.2e-35  Score=245.85  Aligned_cols=255  Identities=16%  Similarity=0.145  Sum_probs=133.9

Q ss_pred             hHHHHHHH-cCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHh
Q psy138           33 TSLMYAAQ-QGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL--IEAADEDGYTPLHLAAIA  109 (321)
Q Consensus        33 ~~L~~A~~-~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~t~l~~A~~~  109 (321)
                      +.+++|.. .++.+.++++++.+..        +.||||+|++.|+.+++++|++++...  ....+..|.||||+|+..
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            34444444 3445555555544322        346666666666666666666655411  112233445566666666


Q ss_pred             CCHHHHHHHHHcCCCC---ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCchhhhHh-hhcccccccc
Q psy138          110 GNVPLIHTLLAHRANV---NSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST--PDIHGGYPIHYAS-QMCGHASEMG  183 (321)
Q Consensus       110 ~~~~~v~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~--~~~~~~~~l~~~~-~~~~~~~~~~  183 (321)
                      |+.+++++|+++|+++   +..+.+ .||||+|+..|+.+++++|+++|++++.  .+..|.||+|+|+ .         
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~---------  208 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG---------  208 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST---------
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH---------
Confidence            6666666666666431   111112 5666666666666666666666665544  4555666666665 4         


Q ss_pred             cchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccC-------CCC----cH------
Q psy138          184 NDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK-------DGL----TA------  246 (321)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-------~g~----t~------  246 (321)
                         .++.+++++|++.|.       .+.|||+.|+..|+.+++++|+++|++++..+.       .|.    ++      
T Consensus       209 ---~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~  278 (376)
T 2aja_A          209 ---RGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG  278 (376)
T ss_dssp             ---TCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHH
T ss_pred             ---CCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhh
Confidence               223566666665442       145666666666666666666666655443321       110    00      


Q ss_pred             ---HHHHHH---cCCHHHHHHHHhhcCC----CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          247 ---LHCAAS---RGHRECLETLITLCGA----DVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       247 ---l~~a~~---~~~~~~~~~Ll~~~~~----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                         +.....   .+..+.+++|++..++    +.......+.|||++|+..|+.+++++|+++|   .+++..|+|+.++
T Consensus       279 ~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~  355 (376)
T 2aja_A          279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYI  355 (376)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------
T ss_pred             HHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhcccc
Confidence               011111   1235566676652111    11122335668999999999999999999876   7778888888777


Q ss_pred             ec
Q psy138          317 WR  318 (321)
Q Consensus       317 ~~  318 (321)
                      .+
T Consensus       356 ~~  357 (376)
T 2aja_A          356 NE  357 (376)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=4.4e-31  Score=196.63  Aligned_cols=160  Identities=26%  Similarity=0.353  Sum_probs=147.4

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      ..+|.++||.|++.|+.+++++|++.++..+...+..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHH
Confidence            345899999999999999999999988887888899999999999999999999999999988 6888999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchh
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR  187 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (321)
                      ..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|..             
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-------------  150 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-------------  150 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-------------
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999764             


Q ss_pred             hhHHHHHHHHHcCC
Q psy138          188 VGLAVLKVLLHHNV  201 (321)
Q Consensus       188 ~~~~~~~~l~~~~~  201 (321)
                      .+.+++++|++.|+
T Consensus       151 ~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHTC--
T ss_pred             CChHHHHHHhhccc
Confidence            23688999888764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=2.7e-34  Score=239.36  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=169.6

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCc--ccccccCCccHHHHHHHcCcHHHHHHHHHhCCc----cccccCCCCCc
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNA--VRERDRTRKTVLHYCAENTILSCAETILEVAPD----LIEAADEDGYT  101 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~~~t  101 (321)
                      ..++.||||.|++.|+.+++++|++.+...  ....+..|.||||+|+..|+.+++++|++++++    .+...+   .|
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T  165 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH  165 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence            455789999999999999999999988632  223455678999999999999999999999964    122222   89


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcc--CCCCCCcHHHHHH-hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccc
Q psy138          102 PLHLAAIAGNVPLIHTLLAHRANVNS--QDNEGHSVVHWAT-VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGH  178 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~t~l~~a~-~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (321)
                      |||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.       .+.||++.|+..   
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~---  235 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY---  235 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC---
Confidence            99999999999999999999999877  7888999999999 9999999999999764       378999998873   


Q ss_pred             ccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH---------------------------HHHHHHHH
Q psy138          179 ASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS---------------------------DAILALVK  231 (321)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~---------------------------~~~~~Ll~  231 (321)
                               +..+++++|+++|.+++..+    ++++.|+..|+.                           +.+++|++
T Consensus       236 ---------g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~  302 (376)
T 2aja_A          236 ---------GEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS  302 (376)
T ss_dssp             ---------TTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred             ---------CCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHh
Confidence                     44689999999987765543    234444444443                           34455554


Q ss_pred             cCC-----CcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          232 AGA-----NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       232 ~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      .+.     +.......+.+|||+|+..|+.+++++|++ .|   ..++..+.|++.+|-..|..++.+.-+++
T Consensus       303 ~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS-IP---SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT-SH---HHHHSCC----------------------
T ss_pred             ChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHc-Ch---HHHHHHHHhccccccccccccHHHHHHHH
Confidence            221     011112346689999999999999999998 44   66788999999999999999988765543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.6e-30  Score=191.04  Aligned_cols=150  Identities=33%  Similarity=0.399  Sum_probs=126.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccc
Q psy138          100 YTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHA  179 (321)
Q Consensus       100 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (321)
                      .+||+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|++.|+++                     
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------------   60 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---------------------   60 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------------
Confidence            478888888888888888888888776 4677888888888888888888777766554                     


Q ss_pred             cccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHH
Q psy138          180 SEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL  259 (321)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  259 (321)
                                              +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        61 ------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  116 (153)
T 1awc_B           61 ------------------------DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV  116 (153)
T ss_dssp             ------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ------------------------CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                                    34455677888888888889999999999999988888999999999999999999


Q ss_pred             HHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy138          260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL  296 (321)
Q Consensus       260 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  296 (321)
                      ++|++ .|++++.+|..|.||+++|+..|+.+++++|
T Consensus       117 ~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          117 ELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99998 6999999999999999999999999998886

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.9e-30  Score=190.56  Aligned_cols=151  Identities=23%  Similarity=0.280  Sum_probs=132.4

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      ..|+|+.|++.|+.+++++|++++... . .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            468999999999999999999999874 3 57889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHH
Q psy138          145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD  224 (321)
Q Consensus       145 ~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  224 (321)
                      .+++++|+++|++++                                             ..+..|.||||+|+..|+.+
T Consensus        80 ~~~v~~Ll~~g~~~~---------------------------------------------~~~~~g~t~L~~A~~~~~~~  114 (153)
T 1awc_B           80 ANIVEVLLKHGADVN---------------------------------------------AKDMLKMTALHWATEHNHQE  114 (153)
T ss_dssp             HHHHHHHHTTTCCTT---------------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCCC---------------------------------------------CCCCCCCCHHHHHHHcCCHH
Confidence            998888888766554                                             34455777888888888888


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q psy138          225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL  262 (321)
Q Consensus       225 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  262 (321)
                      ++++|+++|++++.++..|.||+|+|+..|+.+++++|
T Consensus       115 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888888888888888888888888888888876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.6e-33  Score=222.44  Aligned_cols=205  Identities=18%  Similarity=0.226  Sum_probs=118.6

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcC
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCG  143 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  143 (321)
                      .|.||||.|+..++.+.++.|++++.++ +. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            3556666666666666666666665552 21 244556666666666666666666666666666666666666666665


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCH
Q psy138          144 EVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSS  223 (321)
Q Consensus       144 ~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  223 (321)
                      +.+++++|+++                                             |++++..+..|.||||+|+..|+.
T Consensus        82 ~~~~v~~Ll~~---------------------------------------------ga~~~~~d~~g~tpL~~A~~~~~~  116 (239)
T 1ycs_B           82 HTEIVKFLVQF---------------------------------------------GVNVNAADSDGWTPLHCAASCNNV  116 (239)
T ss_dssp             CHHHHHHHHHH---------------------------------------------TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CHHHHHHHHHc---------------------------------------------CCCCCccCCCCCCHHHHHHHcCCH
Confidence            55555555544                                             445555666677888888888888


Q ss_pred             HHHHHHHHcCCCcccccCCCC-cHHHHH--HHcCCHHHHHHHHhhcCCCcccC---------CCCCCcHHHHHHHcCCHH
Q psy138          224 DAILALVKAGANVEAHDKDGL-TALHCA--ASRGHRECLETLITLCGADVDVI---------DTNGCSALFYAVTLGHAD  291 (321)
Q Consensus       224 ~~~~~Ll~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~t~l~~A~~~~~~~  291 (321)
                      +++++|+++|++++..+..|. ||+|+|  +..|+.+++++|++ .|++++..         +..+.++.+++.+.|.  
T Consensus       117 ~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--  193 (239)
T 1ycs_B          117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--  193 (239)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--
T ss_pred             HHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC--
Confidence            888888888888888876666 888888  67788888888888 57777665         5567788888777776  


Q ss_pred             HHHHHHHcCCC------CCccCCCCCccceeec
Q psy138          292 ATTLLLQYGAT------PNRQDRKGRTYEYQWR  318 (321)
Q Consensus       292 ~~~~Ll~~ga~------~~~~~~~g~t~l~~~~  318 (321)
                      +++.|.+.+.+      ....++.|.+|.+|.+
T Consensus       194 ~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          194 CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            44555555544      1456677888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=7.6e-31  Score=195.33  Aligned_cols=157  Identities=24%  Similarity=0.278  Sum_probs=120.9

Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHh
Q psy138           62 DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATV  141 (321)
Q Consensus        62 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~  141 (321)
                      +..|.|+||.|++.|+.+++++|++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            55678999999999999999999987766667777888899999999999999999999999999988899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcC
Q psy138          142 CGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG  221 (321)
Q Consensus       142 ~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  221 (321)
                      .++.+++++|+++|++++..+                                             ..|.||||+|+..|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~---------------------------------------------~~g~t~L~~A~~~~  119 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVAD---------------------------------------------LWKFTPLHEAAAKG  119 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC---------------------------------------------TTCCCHHHHHHHTT
T ss_pred             cCcHHHHHHHHhCCCCCCCcC---------------------------------------------CCCCCHHHHHHHcC
Confidence            988888888887766655544                                             44556666666666


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       222 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      +.+++++|+++|++++.++..|.||+|+|+. ++.+++++|++
T Consensus       120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A          120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            6666666666666666666666666666544 66666666665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.2e-30  Score=190.09  Aligned_cols=153  Identities=27%  Similarity=0.346  Sum_probs=123.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           99 GYTPLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        99 ~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      +.|||++|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|+                     
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~---------------------   59 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA---------------------   59 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC---------------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC---------------------
Confidence            34677777777777777777766 33666666677777777 66666666666665544                     


Q ss_pred             cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRE  257 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  257 (321)
                                              +++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        60 ------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           60 ------------------------SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             ------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ------------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH
Confidence                                    44555666788888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          258 CLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      ++++|++ . ++++.+|..|.|||++|+..|+.+++++|+++
T Consensus       116 ~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          116 VVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999998 4 89999999999999999999999999999874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9.1e-30  Score=187.68  Aligned_cols=154  Identities=24%  Similarity=0.275  Sum_probs=143.8

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      |.|+||.|++.|+.+.+++|++..+.+++..+..|.||||+ +..|+.+++++|++++.+ ++..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            67999999999999999999999656788999999999999 999999999999999988 6888999999999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhH
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGL  190 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (321)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. ++++..+..|.||+++|+..            .+.
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~------------~~~  146 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR------------GAQ  146 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS------------CCH
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc------------CcH
Confidence            99999999999999999999999999999999999999999999 99999999999999999873            447


Q ss_pred             HHHHHHHHc
Q psy138          191 AVLKVLLHH  199 (321)
Q Consensus       191 ~~~~~l~~~  199 (321)
                      +++++|+++
T Consensus       147 ~~v~~Ll~~  155 (156)
T 1bd8_A          147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            888888764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=3.3e-31  Score=209.19  Aligned_cols=166  Identities=20%  Similarity=0.235  Sum_probs=117.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhc
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC  176 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~  176 (321)
                      ..|.||||.|+..++.++++.|+++|++++.. ..|.|||+.|+..|+.+++++|++.|++                   
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------   62 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-------------------   62 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-------------------
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence            46788888888888888888888888888754 6778888888888888888777766554                   


Q ss_pred             ccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCH
Q psy138          177 GHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR  256 (321)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  256 (321)
                                                ++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus        63 --------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  116 (239)
T 1ycs_B           63 --------------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV  116 (239)
T ss_dssp             --------------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             --------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence                                      444566688899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcccCCCCCC-cHHHHH--HHcCCHHHHHHHHHcCCCCCccCCC
Q psy138          257 ECLETLITLCGADVDVIDTNGC-SALFYA--VTLGHADATTLLLQYGATPNRQDRK  309 (321)
Q Consensus       257 ~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~Ll~~ga~~~~~~~~  309 (321)
                      +++++|++ +|++++.++..|. ||+|+|  +..|+.+++++|+++|++++.++..
T Consensus       117 ~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          117 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred             HHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccc
Confidence            99999999 7999999998887 999999  7889999999999999999887544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2.2e-29  Score=185.48  Aligned_cols=145  Identities=24%  Similarity=0.227  Sum_probs=118.7

Q ss_pred             CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccc
Q psy138          159 STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA  238 (321)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  238 (321)
                      ...+..+.|||+.|+.            ....+++++|+++|.+++..+..|.||||+|+ .|+.+++++|+++|++++.
T Consensus         6 ~~~~~~~~t~L~~A~~------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~   72 (156)
T 1bi7_B            6 GSSMEPSADWLATAAA------------RGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC   72 (156)
T ss_dssp             ----CCSTTHHHHHHH------------HTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC
T ss_pred             cCCCccchHHHHHHHH------------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC
Confidence            3456778999999998            45589999999999999999999999999985 9999999999999999999


Q ss_pred             ccCCCCc-HHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          239 HDKDGLT-ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       239 ~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++..|.| |||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||.+-.
T Consensus        73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           73 ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             cCCCCCcHHHHHHHHCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999 9999999999999999999 6999999999999999999999999999999999999999999999998743

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=9.9e-29  Score=177.60  Aligned_cols=134  Identities=25%  Similarity=0.248  Sum_probs=127.0

Q ss_pred             CCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCC
Q psy138          155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA  234 (321)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  234 (321)
                      +++++..+..|.|||+.|+.            ..+.+++++|++.|.+++..+..|.||||+|+. ++.+++++|+++|+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~   68 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAA------------RGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA   68 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHH------------TTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred             CCCccCCCCCCccHHHHHHH------------cCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence            45778888899999999987            445899999999999999999999999999999 99999999999999


Q ss_pred             CcccccCC-CCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          235 NVEAHDKD-GLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       235 ~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      +++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|||
T Consensus        69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 EPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999 9999999999999999999999 7999999999999999999999999999999999986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=4.1e-29  Score=188.57  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=99.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCchhhhHh
Q psy138           99 GYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATVCGEV----EALETVLSAGAEPSTPDIHGGYPIHYAS  173 (321)
Q Consensus        99 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~----~i~~~L~~~~~~~~~~~~~~~~~l~~~~  173 (321)
                      +.++|+.|++.|+.+.++.+++.+.+  ..+ ..|.||||+|+..++.    +++++|+++|++++.++..|.||||+++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            45678888888888888887776643  333 5677888888877764    3566666666655555555555555554


Q ss_pred             hhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCC-cHHHHHHH
Q psy138          174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGL-TALHCAAS  252 (321)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~a~~  252 (321)
                      .....      .....                                 .+++++|+++|++++.+|..|. ||||+|+.
T Consensus        84 ~~~~~------~~~~~---------------------------------~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~  124 (186)
T 3t8k_A           84 QGGGN------DITGT---------------------------------TELCKIFLEKGADITALYKPYKIVVFKNIFN  124 (186)
T ss_dssp             HHCTT------CHHHH---------------------------------HHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG
T ss_pred             HcCCc------chhhH---------------------------------HHHHHHHHHCCCCCCccCCCcCchHHHHHHH
Confidence            43211      00112                                 3455666666666666666666 66666655


Q ss_pred             cC-----CHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q psy138          253 RG-----HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQ  306 (321)
Q Consensus       253 ~~-----~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~  306 (321)
                      .+     ..+++++|++..|++++.+|..|.||||+|++.++.+++++|.++..+.+.+
T Consensus       125 ~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            32     2346666665336666666666666666666666666666666655444443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=4.5e-28  Score=182.86  Aligned_cols=159  Identities=13%  Similarity=0.023  Sum_probs=104.4

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCH----HHHHHHHHcCCCCccCCCCCCcHHHHHH
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNV----PLIHTLLAHRANVNSQDNEGHSVVHWAT  140 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  140 (321)
                      +.++|+.|++.|+.+.++.++..+...  ..+..|.||||+|+..++.    +++++|+++|++++.++..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            346777777777777777777765431  1225677888888877764    4788888888888888888888888888


Q ss_pred             hcCC------HHHHHHHHHcCCCCCCCCCCCC-chhhhHhhhcccccccccchhhhHHHHHHHHH-cCCCCcccCCCCCc
Q psy138          141 VCGE------VEALETVLSAGAEPSTPDIHGG-YPIHYASQMCGHASEMGNDVRVGLAVLKVLLH-HNVDVNVVDKDGRQ  212 (321)
Q Consensus       141 ~~~~------~~i~~~L~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t  212 (321)
                      ..++      .+++++|+++|++++.+|..|. ||+|+|+.. +.      ......+++++|++ +|++++..+..|.|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~-~~------~~~~~~~iv~~Ll~~~gad~~~~d~~G~T  156 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY-FV------DENEMIPLYKLIFSQSGLQLLIKDKWGLT  156 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC-CS------CHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc-CC------ChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence            8776      5678888888888888888888 788777652 11      00122345555555 55555555555555


Q ss_pred             hhHHHHhcCCHHHHHHHHHc
Q psy138          213 PILWAASAGSSDAILALVKA  232 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~  232 (321)
                      |||+|+..|+.+++++|.++
T Consensus       157 pL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          157 ALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            55555555555555555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=6.3e-28  Score=177.63  Aligned_cols=141  Identities=26%  Similarity=0.311  Sum_probs=85.6

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCC
Q psy138          130 NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD  209 (321)
Q Consensus       130 ~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (321)
                      ..|.|||++|+..|+.+++++|+++|++++..+..|.||+|+|+             ..+.+++++|+++|++++..+..
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-------------~~~~~~v~~Ll~~g~~~~~~d~~   76 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-------------MGSARVAELLLLHGAEPNCADPA   76 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-------------TTCHHHHHHHHTTTCCCCCCCTT
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-------------cCCHHHHHHHHHcCCCCCCcCCC
Confidence            33444444444444444444444444444444444444444431             11245555555556666666777


Q ss_pred             CCc-hhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHH
Q psy138          210 GRQ-PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA  284 (321)
Q Consensus       210 ~~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  284 (321)
                      |.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++ +|++++.++..|.||.+.+
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            787 9999999999999999999999999999999999999999999999999999 6999999999999987744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.2e-27  Score=169.68  Aligned_cols=132  Identities=27%  Similarity=0.392  Sum_probs=88.6

Q ss_pred             CCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCC
Q psy138          124 NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDV  203 (321)
Q Consensus       124 ~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (321)
                      +++..+..|.|||++|+..|+.+++++|++.|++++..+..|.||+|+|+.  ++           .+++++|+++|+++
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~-----------~~~v~~Ll~~g~~~   70 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GS-----------AQVAELLLLHGAEP   70 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SC-----------HHHHHHHHHHTCCS
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CC-----------HHHHHHHHHCCCCC
Confidence            344444444444444444444444444444444444444444444444443  11           34555555555666


Q ss_pred             cccCCC-CCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCC
Q psy138          204 NVVDKD-GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD  269 (321)
Q Consensus       204 ~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  269 (321)
                      +..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++ +|+|
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad  136 (136)
T 1d9s_A           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD  136 (136)
T ss_dssp             SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            666677 7888888999999999999999999999999999999999999999999999998 5764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=3.6e-27  Score=169.43  Aligned_cols=128  Identities=30%  Similarity=0.451  Sum_probs=118.4

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      .....|.||||.|++.|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence            3445699999999999999999999998765 888899999999999999999999999999887 67888999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG  155 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~  155 (321)
                      |+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=6.5e-27  Score=165.88  Aligned_cols=126  Identities=37%  Similarity=0.566  Sum_probs=119.7

Q ss_pred             cChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHh
Q psy138           30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIA  109 (321)
Q Consensus        30 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  109 (321)
                      +|.||||.|++.|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++++.. ++..+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            489999999999999999999998766 788899999999999999999999999999887 678889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q psy138          110 GNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE  157 (321)
Q Consensus       110 ~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~  157 (321)
                      |+.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=6.7e-27  Score=168.30  Aligned_cols=117  Identities=27%  Similarity=0.337  Sum_probs=110.3

Q ss_pred             CCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCc
Q psy138          200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCS  279 (321)
Q Consensus       200 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  279 (321)
                      |+++ .++..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCC
Confidence            4566 678899999999999999999999999999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          280 ALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       280 ~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      |||+|+..++.+++++|+++|++++.+|..|.||+|++.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            999999999999999999999999999999999999854

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=2e-26  Score=163.30  Aligned_cols=126  Identities=43%  Similarity=0.647  Sum_probs=120.3

Q ss_pred             CCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCC
Q psy138          164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDG  243 (321)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g  243 (321)
                      +|.||++.|+.            ..+.+++++|++.+.+++..+..|.||||.|+..++.+++++|+++|++++..+..|
T Consensus         1 ~g~t~L~~A~~------------~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   68 (126)
T 1n0r_A            1 NGRTPLHLAAR------------NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG   68 (126)
T ss_dssp             CCCCHHHHHHH------------HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCccHHHHHHH------------cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence            47899999987            445899999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          244 LTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       244 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      .||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|||
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999 6999999999999999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3.1e-26  Score=164.52  Aligned_cols=126  Identities=31%  Similarity=0.401  Sum_probs=117.6

Q ss_pred             CCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccC
Q psy138          162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDK  241 (321)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  241 (321)
                      ...+.||++.|+.            ..+.+++++|++.|.+++..+..|.||||.|+..|+.+++++|+++|++++..|.
T Consensus        11 ~~~~~t~l~~A~~------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~   78 (136)
T 2jab_A           11 GSDLGKKLLEAAR------------AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA   78 (136)
T ss_dssp             -CHHHHHHHHHHH------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccHHHHHHHH------------hCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence            4557889999987            4558999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       242 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      .|.||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999 69999999999999999999999999999999987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=5e-26  Score=160.49  Aligned_cols=111  Identities=30%  Similarity=0.374  Sum_probs=105.3

Q ss_pred             CCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH
Q psy138          207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT  286 (321)
Q Consensus       207 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  286 (321)
                      +..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999 699999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          287 LGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       287 ~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      .++.+++++|+++|++++.+|..|.||+|++.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            99999999999999999999999999999864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.6e-26  Score=164.47  Aligned_cols=134  Identities=23%  Similarity=0.307  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCC
Q psy138          155 GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGA  234 (321)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  234 (321)
                      |+++ ..+..|.||+|.|+.            ..+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASI------------KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA   67 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHH------------HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCC-CcCCCCCCHHHHHHH------------cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556 678889999999987            445899999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          235 NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       235 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      +++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..+..+++++|.+.+..
T Consensus        68 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CTTCCCGGGCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             cccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999999999999999999999999999999 6999999999999999999999999999988887654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=4.6e-25  Score=166.71  Aligned_cols=140  Identities=21%  Similarity=0.285  Sum_probs=122.7

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC-CCCCcHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLA  106 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~A  106 (321)
                      ..+|.||||.|++.|+.++++.|++  +.+++.+|..|.||||+|+..|+.+++++|++++.+ ++..+ ..|.||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHH
Confidence            4579999999999999999999999  445889999999999999999999999999999988 45555 8899999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccch
Q psy138          107 AIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV  186 (321)
Q Consensus       107 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (321)
                      +..|+.+++++|+++|++++..+..|.|||++|+..++.                 ..+.+++++++.            
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~------------  168 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRR------------  168 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHH------------
T ss_pred             HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHH------------
Confidence            999999999999999999999999999999999875433                 345788888886            


Q ss_pred             hhhHHHHHHHHHc
Q psy138          187 RVGLAVLKVLLHH  199 (321)
Q Consensus       187 ~~~~~~~~~l~~~  199 (321)
                      ....+++++|.++
T Consensus       169 ~~~~~i~~~L~~~  181 (183)
T 3deo_A          169 IGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHh
Confidence            3446788888654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=4.8e-25  Score=166.59  Aligned_cols=140  Identities=21%  Similarity=0.258  Sum_probs=124.2

Q ss_pred             ccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHHHHHH
Q psy138           62 DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWAT  140 (321)
Q Consensus        62 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~  140 (321)
                      +..|.||||.|+..|+.+++++|++ +.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5678999999999999999999999 655 68889999999999999999999999999999999888 88999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhc
Q psy138          141 VCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA  220 (321)
Q Consensus       141 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  220 (321)
                      ..|+.+++++|+++|++++..+..|.||+++|+....                             ...+.+++++|+..
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-----------------------------~~~~~~~l~~a~~~  169 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------------------TTPKGNPMQFGRRI  169 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-----------------------------TCCCCSHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-----------------------------CcccccHHHHHHHc
Confidence            9999999999999999999999999999999876311                             13356788888888


Q ss_pred             CCHHHHHHHHHc
Q psy138          221 GSSDAILALVKA  232 (321)
Q Consensus       221 ~~~~~~~~Ll~~  232 (321)
                      |..+++++|.++
T Consensus       170 ~~~~i~~~L~~~  181 (183)
T 3deo_A          170 GLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHh
Confidence            888888888754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=5.1e-25  Score=155.27  Aligned_cols=116  Identities=25%  Similarity=0.290  Sum_probs=98.0

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAI  108 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  108 (321)
                      ..|.|+||.|+..|+.+++++|++.+.. ++.++..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence            3478999999999999999999987765 788888899999999999999999999988877 67788889999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      .|+.+++++|+++|++++..+..|.||+++|...+..+
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            99999999999999999988899999999885444333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6e-25  Score=173.66  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHHHHHHhc
Q psy138           64 TRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD-NEGHSVVHWATVC  142 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~~~  142 (321)
                      .|.||||.|+..|+.+++++|++ +.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            45556666666666666666655 433 45555556666666666666666666666666665555 4566666666666


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCC
Q psy138          143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGS  222 (321)
Q Consensus       143 ~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  222 (321)
                      |+.+++++|+++|++++..+..|.||+++|+...                             ....+.|||++|+..|+
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------------------~~~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------------------KTTPKGNPMQFGRRIGL  172 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------------------TTCCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------------------hccCCCCHHHHHHHcCh
Confidence            6666666666666666666666666666554321                             11346688888888888


Q ss_pred             HHHHHHHHHcCC
Q psy138          223 SDAILALVKAGA  234 (321)
Q Consensus       223 ~~~~~~Ll~~~~  234 (321)
                      .+++++|++.+.
T Consensus       173 ~~iv~~L~~~~~  184 (244)
T 3ui2_A          173 EKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHHE
T ss_pred             HHHHHHHHHhcc
Confidence            888888887543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=4.9e-25  Score=171.97  Aligned_cols=135  Identities=20%  Similarity=0.206  Sum_probs=113.3

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHh-CCccccccCCCCCcHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEV-APDLIEAADEDGYTPLHLA  106 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~A  106 (321)
                      +..|.||||.|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.+++++|++. +.+ ++..+..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHH
Confidence            34688999999999999999999998765 888899999999999999999999999998 555 788999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q psy138          107 AIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIH  164 (321)
Q Consensus       107 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~  164 (321)
                      +..|+.+++++|+++|++++..+..|.|||++|+..+..++++.|++.++.....+..
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence            9999999999999999999999999999999999999999999999998887665443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=175.00  Aligned_cols=139  Identities=22%  Similarity=0.232  Sum_probs=123.6

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccc------cccCCccHHHHHHHc---CcHHHHHHHHHhCCccccccCCCC
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRE------RDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDG   99 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~   99 (321)
                      ..+.++|+.|+..|+.+.+++|++.+.+ ++.      .+..|.||||+|+..   ++.+++++|++++++ ++..+..|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G  226 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADG  226 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCC
Confidence            3466889999999999999999988876 554      688999999999997   899999999999988 68889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhh
Q psy138          100 YTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQM  175 (321)
Q Consensus       100 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~  175 (321)
                      .||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+++|++      .|.||+|+|+..
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999876      578999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=3.5e-24  Score=142.99  Aligned_cols=93  Identities=43%  Similarity=0.653  Sum_probs=89.3

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcC
Q psy138          209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLG  288 (321)
Q Consensus       209 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  288 (321)
                      +|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC
Confidence            47899999999999999999999999999999999999999999999999999999 79999999999999999999999


Q ss_pred             CHHHHHHHHHcCCC
Q psy138          289 HADATTLLLQYGAT  302 (321)
Q Consensus       289 ~~~~~~~Ll~~ga~  302 (321)
                      +.+++++|+++||+
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.6e-24  Score=170.02  Aligned_cols=142  Identities=21%  Similarity=0.283  Sum_probs=125.7

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccC-CCCCcHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAAD-EDGYTPLHLAA  107 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~A~  107 (321)
                      .+|.||||.|++.|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++++.+ ++..+ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence            469999999999999999999999 4 45889999999999999999999999999999988 45555 88999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchh
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR  187 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (321)
                      ..|+.+++++|+++|++++..+..|.|||++|+..++                 ...+.+|+++++.            .
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~------------~  170 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRR------------I  170 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHH------------H
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHH------------c
Confidence            9999999999999999999999999999999986332                 2467899999987            4


Q ss_pred             hhHHHHHHHHHcCCC
Q psy138          188 VGLAVLKVLLHHNVD  202 (321)
Q Consensus       188 ~~~~~~~~l~~~~~~  202 (321)
                      ...+++++|.+.+.+
T Consensus       171 g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          171 GLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHHEE
T ss_pred             ChHHHHHHHHHhccc
Confidence            557899999987543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4.1e-25  Score=172.39  Aligned_cols=137  Identities=26%  Similarity=0.303  Sum_probs=112.7

Q ss_pred             CCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHc-CCCccccc
Q psy138          162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA-GANVEAHD  240 (321)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~  240 (321)
                      +..|.||||.|+.            ....+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. |++++..|
T Consensus        70 ~~~g~t~L~~A~~------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d  137 (222)
T 3ehr_A           70 AESIDNPLHEAAK------------RGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN  137 (222)
T ss_dssp             EEEESCHHHHHHH------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCC
T ss_pred             ccccccccccccc------------cCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccC
Confidence            5568899999987            4458999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q psy138          241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGR  311 (321)
Q Consensus       241 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~  311 (321)
                      ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.++++.|++.|+....+|.+|+
T Consensus       138 ~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          138 KLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            999999999999999999999999 5999999999999999999999999999999999999988887764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.5e-23  Score=168.55  Aligned_cols=130  Identities=20%  Similarity=0.224  Sum_probs=112.0

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCc
Q psy138          133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ  212 (321)
Q Consensus       133 ~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t  212 (321)
                      .++|+.|+..++.+.++.+++.|.++....                                       .++..+..|.|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~---------------------------------------~l~~~~~~g~t  171 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI---------------------------------------PLANGHEPDET  171 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC---------------------------------------CCSSCSSTTCB
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhc---------------------------------------cccccccCCCC
Confidence            456777777777777777777666543210                                       02334567899


Q ss_pred             hhHHHHhc---CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCC
Q psy138          213 PILWAASA---GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGH  289 (321)
Q Consensus       213 ~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  289 (321)
                      |||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+
T Consensus       172 ~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKH  250 (278)
T ss_dssp             HHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCC
Confidence            99999999   89999999999999999999999999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy138          290 ADATTLLLQYGAT  302 (321)
Q Consensus       290 ~~~~~~Ll~~ga~  302 (321)
                      .+++++|+++|++
T Consensus       251 ~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          251 EHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=3.1e-24  Score=174.35  Aligned_cols=134  Identities=22%  Similarity=0.152  Sum_probs=122.7

Q ss_pred             CCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcc------cCCCCCchhHHHHhc---CCHHHHHHHHHcCCC
Q psy138          165 GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNV------VDKDGRQPILWAASA---GSSDAILALVKAGAN  235 (321)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~  235 (321)
                      ..++++.|+.            ...++.++.|+..|.+++.      .+..|.||||+|+..   ++.+++++|+++|++
T Consensus       151 ~~~~L~~A~~------------~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad  218 (301)
T 2b0o_E          151 EPQRLWTAIC------------NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH  218 (301)
T ss_dssp             CHHHHHHHHH------------TTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred             hHHHHhhhhh------------ccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence            4467888887            4457889999999999987      588999999999997   899999999999999


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccce
Q psy138          236 VEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEY  315 (321)
Q Consensus       236 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~  315 (321)
                      ++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++      .|.||||
T Consensus       219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh  291 (301)
T 2b0o_E          219 LDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLH  291 (301)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhH
Confidence            99999999999999999999999999999 7999999999999999999999999999999999987      5899999


Q ss_pred             ee
Q psy138          316 QW  317 (321)
Q Consensus       316 ~~  317 (321)
                      ++
T Consensus       292 ~A  293 (301)
T 2b0o_E          292 VD  293 (301)
T ss_dssp             --
T ss_pred             HH
Confidence            85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=1.5e-24  Score=151.01  Aligned_cols=109  Identities=34%  Similarity=0.452  Sum_probs=103.1

Q ss_pred             ccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHH
Q psy138          205 VVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYA  284 (321)
Q Consensus       205 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  284 (321)
                      ..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999 6999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCccc
Q psy138          285 VTLGHADATTLLLQYGATPNRQDRKGRTYE  314 (321)
Q Consensus       285 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l  314 (321)
                      +..++.+++++|+++|++++.++..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999999999999884

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=2.8e-23  Score=172.44  Aligned_cols=144  Identities=31%  Similarity=0.347  Sum_probs=116.8

Q ss_pred             CCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccC--CCCCchhHHHHhcCCHHHHHHHHHcCCCcccccC
Q psy138          164 HGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVD--KDGRQPILWAASAGSSDAILALVKAGANVEAHDK  241 (321)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  241 (321)
                      .+.++|+.|+...           .++++++.|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       198 ~~~t~L~~Aa~~~-----------g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~  266 (368)
T 3jue_A          198 HPGALLFRASGHP-----------PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS  266 (368)
T ss_dssp             CHHHHHHHHTSSS-----------CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcHHHHHHHcc-----------CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC
Confidence            4457888888641           45899999999999999988  8899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCccceeec
Q psy138          242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG---ATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       242 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g---a~~~~~~~~g~t~l~~~~  318 (321)
                      .|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|   ++....+..+.|+++.++
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            99999999999999999999999 69999999999999999999999999999999886   455677788899998876


Q ss_pred             c
Q psy138          319 S  319 (321)
Q Consensus       319 ~  319 (321)
                      .
T Consensus       346 ~  346 (368)
T 3jue_A          346 D  346 (368)
T ss_dssp             -
T ss_pred             H
Confidence            4

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-22  Score=134.98  Aligned_cols=91  Identities=38%  Similarity=0.611  Sum_probs=65.1

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      |.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            56777777777777777777777666 56666677777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCC
Q psy138          145 VEALETVLSAGA  156 (321)
Q Consensus       145 ~~i~~~L~~~~~  156 (321)
                      .+++++|+++|+
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            777777777665

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.2e-22  Score=161.64  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=118.3

Q ss_pred             cChhHHHHHHHcCCHHHHHHHHHcCCCc-----ccccccCCccHHHHHHHc---CcHHHHHHHHHhCCccccccCCCCCc
Q psy138           30 EGATSLMYAAQQGKDAEVKAILASRPNA-----VRERDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDGYT  101 (321)
Q Consensus        30 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t  101 (321)
                      ...++|+.|+..|+.+.++.+++.+.+.     ++..+..|.||||+|+..   |+.+++++|++++++ ++..|..|.|
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~T  207 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCC
Confidence            3567999999999999999999988763     444578999999999999   999999999999988 6888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q psy138          102 PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP  158 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~  158 (321)
                      |||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++.
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999999999998753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=1.8e-22  Score=167.57  Aligned_cols=143  Identities=19%  Similarity=0.217  Sum_probs=117.9

Q ss_pred             ccChhHHHHHHHc-CCHHHHHHHHHcCCCcccccc--cCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           29 MEGATSLMYAAQQ-GKDAEVKAILASRPNAVRERD--RTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        29 ~~g~~~L~~A~~~-g~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      ..+.++||.|+.. |+.++++.||+.+.+ ++..+  ..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            3467899999999 999999999998866 77777  8999999999999999999999999988 68889999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCchhhhHh
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE---PSTPDIHGGYPIHYAS  173 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~---~~~~~~~~~~~l~~~~  173 (321)
                      |+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|++.+..   ....+..+.+++..+.
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999987643   2233445566665544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=2.3e-22  Score=139.87  Aligned_cols=107  Identities=29%  Similarity=0.413  Sum_probs=70.3

Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHH
Q psy138           61 RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWAT  140 (321)
Q Consensus        61 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  140 (321)
                      +|..|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            455666666666666666666666666655 4555666666666666666666666666666666666666666676666


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCch
Q psy138          141 VCGEVEALETVLSAGAEPSTPDIHGGYP  168 (321)
Q Consensus       141 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~  168 (321)
                      ..++.+++++|+++|++++..+..+.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            6666666666666666666665555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=5.9e-20  Score=126.32  Aligned_cols=92  Identities=37%  Similarity=0.510  Sum_probs=85.7

Q ss_pred             cccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHH
Q psy138          204 NVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFY  283 (321)
Q Consensus       204 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  283 (321)
                      ...+.++.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999 699999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q psy138          284 AVTLGHADATTLL  296 (321)
Q Consensus       284 A~~~~~~~~~~~L  296 (321)
                      |+..++.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.6e-19  Score=123.10  Aligned_cols=91  Identities=25%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             ccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH
Q psy138           60 ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA  139 (321)
Q Consensus        60 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  139 (321)
                      ..+.+|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            3444555566666665666666665555544 344555556666666666666666666666666655555666666666


Q ss_pred             HhcCCHHHHHHH
Q psy138          140 TVCGEVEALETV  151 (321)
Q Consensus       140 ~~~~~~~i~~~L  151 (321)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-37
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-33
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-31
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-24
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-23
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-22
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-19
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.004
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-37
 Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 15/280 (5%)

Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
           T L  A+  G    VK +L    +     +   +T LH  A       A+ +L+     +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-V 59

Query: 93  EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
            A  +D  TPLH AA  G+  ++  LL + AN N     GH+ +H A   G VE +  +L
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
              A  +     G  P+H A++  G            + V ++LL  +   N   K+G  
Sbjct: 120 EKEASQACMTKKGFTPLHVAAK-YGK-----------VRVAELLLERDAHPNAAGKNGLT 167

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           P+  A    + D +  L+  G +  +   +G T LH AA +   E   +L+   G   + 
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANA 226

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
               G + L  A   GHA+   LLL   A  N  ++ G T
Sbjct: 227 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-34
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
           TPLH+A+  G++P++  LL   A+ N  + +  + +H A   G  E  + +L   A+ + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 161 PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
                  P+H A++  GH             ++K+LL +N + N+    G  P+  AA  
Sbjct: 62  KAKDDQTPLHCAAR-IGH-----------TNMVKLLLENNANPNLATTAGHTPLHIAARE 109

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSA 280
           G  + +LAL++  A+     K G T LH AA  G     E L+    A  +    NG + 
Sbjct: 110 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTP 168

Query: 281 LFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW 317
           L  AV   + D   LLL  G +P+     G T  +  
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 205

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 9e-32
 Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 14/293 (4%)

Query: 20  SFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILS 79
             +   +       + ++ A +    E    L  +  +     +   T LH  A+   + 
Sbjct: 87  ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 146

Query: 80  CAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
            AE +LE       AA ++G TPLH+A    N+ ++  LL    + +S    G++ +H A
Sbjct: 147 VAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 205

Query: 140 TVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
               +VE   ++L  G   +   + G  P+H A+Q                 ++ +LL  
Sbjct: 206 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG------------HAEMVALLLSK 253

Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
             + N+ +K G  P+   A  G       L+K G  V+A  + G T LH A+  G+ + +
Sbjct: 254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 313

Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +  +    ADV+     G S L  A   GH D  TLLL+ GA+PN     G T
Sbjct: 314 K-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 3e-30
 Identities = 70/283 (24%), Positives = 121/283 (42%), Gaps = 15/283 (5%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +  T L  AA+ G     K +L ++   V  + +  +T LH  A     +  + +LE   
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           +    A   G+TPLH+AA  G+V  +  LL   A+      +G + +H A   G+V   E
Sbjct: 91  N-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 149

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +L   A P+    +G  P+H A     +           L ++K+LL      +    +
Sbjct: 150 LLLERDAHPNAAGKNGLTPLHVAVH-HNN-----------LDIVKLLLPRGGSPHSPAWN 197

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           G  P+  AA     +   +L++ G +  A    G+T LH AA  GH E +   +    A+
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LLSKQAN 256

Query: 270 VDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
            ++ + +G + L      GH     +L+++G   +   R G T
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 9e-30
 Identities = 66/253 (26%), Positives = 100/253 (39%), Gaps = 16/253 (6%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G T L  A     + ++  +L  R  +         T LH  A+   +  A ++L+   
Sbjct: 164 NGLTPLHVAVHHN-NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
               A    G TPLHLAA  G+  ++  LL+ +AN N  +  G + +H     G V   +
Sbjct: 223 S-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 281

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            ++  G         G  P+H AS                  ++K LL H  DVN   K 
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIK------------LVKFLLQHQADVNAKTKL 329

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLC--G 267
           G  P+  AA  G +D +  L+K GA+      DG T L  A   G+    + L  +    
Sbjct: 330 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 389

Query: 268 ADVDVIDTNGCSA 280
           + V V D +  S 
Sbjct: 390 SFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 7e-15
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 244 LTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATP 303
           LT LH A+  GH   ++ L+   GA  +V +    + L  A   GH +    LLQ  A  
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 304 NRQDRKGRT 312
           N + +  +T
Sbjct: 60  NAKAKDDQT 68

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 8e-33
 Identities = 74/294 (25%), Positives = 119/294 (40%), Gaps = 28/294 (9%)

Query: 29  MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
           +E    L+ A Q      V+ +L    N   + +    T LH   + +     E +L   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
            D +            LAAIAG+V L+   L+  A+VN  D  G +    A V G+V+AL
Sbjct: 63  ADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 149 ETVLSAGAEPSTPDIH----------GGYPIHYASQMCGHASEMGNDVRVGLAVLKVLL- 197
           + +   GA  +               G   +  A++  GH           + VLK+LL 
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GH-----------VEVLKILLD 169

Query: 198 HHNVDVNVVDKDGRQPILWAASAGSSDAILA----LVKAGANVEAHDKDGLTALHCAASR 253
               DVN  D  GR  ++ A  +     + A    L+  GA+V    + G T L  A  +
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 254 GHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQD 307
            H   ++ L+     +++  D++G +AL  AV L       LL + GA+ +  D
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-25
 Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 7/251 (2%)

Query: 67  TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
            +L    +N  +   + +LE   ++    +E G+TPLH A       ++  LL H A+  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
            +   G +    A + G V+ L+  LS GA+ +  D +G      A+      +      
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLT 245
           R   A + +      D   + K G   ++ AA  G  + +  L+ + GA+V A D  G  
Sbjct: 127 RG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 246 ALHCAASRGHRECLETLITL---CGADVDVIDTNGCSALFYAVTLGHADATTLLL-QYGA 301
           AL  A        +E +  L    GADV+V    G + L  AV   H      LL Q   
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 302 TPNRQDRKGRT 312
             N  D  G+T
Sbjct: 245 EINDTDSDGKT 255

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 2e-22
 Identities = 68/233 (29%), Positives = 91/233 (39%), Gaps = 27/233 (11%)

Query: 95  ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNE-GHSVVHWATVCGEVEALETVLS 153
           A  +    L  A    +V L+  LL   ANVN Q+ E G + +H A      + +E +L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
            GA+P     +G  P   A+                            DVN  D  G   
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFL------------SKGADVNECDFYGFTA 108

Query: 214 ILWAASAGSSDAILALVKAGAN----------VEAHDKDGLTALHCAASRGHRECLETLI 263
            + AA  G   A+  L K GAN           E   K G TAL  AA +GH E L+ L+
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 264 TLCGADVDVIDTNG----CSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
              GADV+  D  G      AL  +        T LLL +GA  N +  +G+T
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 6e-17
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 12  PNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHY 71
            N+     + + +      GAT+LM AA++G    +K +L      V   D   +  L +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 72  CAENTILSCAETILEVAPDL---IEAADEDGYTPLHLAAIAGNVPLIHTLLAHR-ANVNS 127
              ++  S  E I  +  D    +    E G TPL LA    ++ L+  LL      +N 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDI 163
            D++G + +  A      +  E +   GA     D+
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 209 DGRQPILWAASAGSSDAILALVKAGANVEAHDKD-GLTALHCAASRGHRECLETLITLCG 267
           +    ++ A      D +  L++ GANV   +++ G T LH A      + +E L+   G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HG 62

Query: 268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY 313
           AD  +   NG +    A   G      L L  GA  N  D  G T 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (293), Expect = 2e-31
 Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 9/265 (3%)

Query: 29  MEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVA 88
           M+    L             ++     N   E   + +   H   ++ +    +      
Sbjct: 37  MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 96

Query: 89  PDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA---TVCGEV 145
            +L    DE G TPLH      N+ L+  L+ H +N    DN G S +  A       + 
Sbjct: 97  LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 156

Query: 146 EALETVLSAGAEP-STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN 204
              E +L          D      +H+     G              ++  ++       
Sbjct: 157 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 216

Query: 205 VVDKDGRQPILWAASAGSSDAILALV----KAGANVEAHDKDGLTALHCAASRGHRECLE 260
               + ++      +    D+IL  +         + A D +G T L+ AA  G+   ++
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 261 TLITLCGADVDVIDTNGCSALFYAV 285
            L+   GAD  + + +G   + +  
Sbjct: 277 ALLDY-GADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 6e-08
 Identities = 14/125 (11%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 190 LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHC 249
           L ++K L    V+ N         +         +   +L    +N  +           
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 78

Query: 250 AASRGHRECLETLITLCGADVDV-IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR 308
            +     + +         ++++ +D +G + L +  ++ + +    L+++G+     D 
Sbjct: 79  VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 138

Query: 309 KGRTY 313
            G + 
Sbjct: 139 MGESC 143

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASR--PNAVRERDRTRKTVLHYCAENTILSCAET 83
             T E  +       + KD+ ++ +       N +  +D    T L+  A    +S  + 
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 84  ILEVAPDLIEAADEDGYTPLHLAA 107
           +L+   D    A++ G  P+   A
Sbjct: 278 LLDYGAD-PFIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 8e-27
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 33  TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLI 92
             +   A  GK  E+K  + +  +     D+  +T LH+          E +L++    +
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-V 63

Query: 93  EAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
              D+ G++PLH+AA AG   ++  LL   A VN+ +  G + +H+A      E    +L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 153 SAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ 212
             GA P   D +    +H A+                     +LL++    N+ D +G  
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIH------------ILLYYKASTNIQDTEGNT 171

Query: 213 PILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           P+  A      +    LV  GA++   +K+  T L  A   G    L+ ++
Sbjct: 172 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 2e-25
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 103 LHLAAIAGNVPLI-HTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP 161
           +   A +G +  +  ++LA ++     D +  + +HWA             SAG      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWAC------------SAGHTEIVE 54

Query: 162 DIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAG 221
            +             G +            ++K LL     VN V+++G  P+ +AAS  
Sbjct: 55  FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 114

Query: 222 SSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSAL 281
             +  + L++ GAN +A D    TA+H AA++G+ + +  L+    A  ++ DT G + L
Sbjct: 115 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPL 173

Query: 282 FYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
             A      +   LL+  GA+   ++++ +T
Sbjct: 174 HLACDEERVEEAKLLVSQGASIYIENKEEKT 204

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 5e-24
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 69  LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQ 128
           +   A +  L   +  +     L    D+D  T LH A  AG+  ++  LL     VN +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 129 DNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV 188
           D+ G S +H A   G  E ++ +L  GA+ +  + +G  P+HYA+    H          
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE--------- 117

Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALH 248
              +  +LL    + +  D      +  AA+ G+   I  L+   A+    D +G T LH
Sbjct: 118 ---IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 174

Query: 249 CAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ 298
            A      E  + L++  GA + + +    + L  A   G       +++
Sbjct: 175 LACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-13
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 191 AVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA 250
            + + +L         D+D R  + WA SAG ++ +  L++ G  V   D  G + LH A
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
           AS G  E ++ L+   GA V+ ++ NGC+ L YA +    +   +LL+ GA P+ +D   
Sbjct: 78  ASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 136

Query: 311 RTYEYQW 317
            T  ++ 
Sbjct: 137 ATAMHRA 143

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-13
 Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 136 VHWATVCGEVEAL-ETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLK 194
           V      G++E L E++L+  +  +  D      +H+A                      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--------- 57

Query: 195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRG 254
                 V VN  D  G  P+  AASAG  + + AL+  GA V A +++G T LH AAS+ 
Sbjct: 58  ---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 114

Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTY 313
             E    L+   GA+ D  D    +A+  A   G+     +LL Y A+ N QD +G T 
Sbjct: 115 RHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTP 172

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (244), Expect = 9e-25
 Identities = 49/245 (20%), Positives = 80/245 (32%), Gaps = 6/245 (2%)

Query: 66  KTVLHYCAENTILSCAETILE--VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRA 123
            T LH    +      + +L      + ++  ++ G T LHLAAI G    +  L A  A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 124 NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP--STPDIHGGYPIHYASQMCGHASE 181
            V   +  GH+ +H A           +L           D +               + 
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 182 MGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA-HD 240
           + +                + +   + DG  P+  A     ++ +  L  AGA++     
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
             G T LH A        LE L+   GAD       G + L  A+   +     LL  +G
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 301 ATPNR 305
           A    
Sbjct: 249 APEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 8e-11
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 204 NVVDKDGRQPILWAASAGSSDAILALVKAGAN---VEAHDKDGLTALHCAASRGHRECLE 260
             V +DG   +  A        +  L+   A    ++  +  G TALH AA  G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE-ASTV 61

Query: 261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
             +   GA V V +  G +AL  A  +       +LLQ   +  R     
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 22/126 (17%), Positives = 41/126 (32%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
                   +Q   + E +         +   +    T LH    +        + +   D
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
           L +     G TPLHLA  A    ++  LL   A+  ++   G + +  A +         
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243

Query: 151 VLSAGA 156
           + + GA
Sbjct: 244 LRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATP---NRQDRKGRT 312
           +  +G +AL  AV   H      LL + A     + Q+  G+T
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQT 47

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 98.8 bits (245), Expect = 3e-24
 Identities = 47/327 (14%), Positives = 93/327 (28%), Gaps = 41/327 (12%)

Query: 3   DVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQ--QGKDAEVKAILASRPNAVRE 60
           ++   F+S   L     S+ + +H  + G  ++    Q      A          +   +
Sbjct: 26  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 85

Query: 61  RDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
           +    + +    A     + L     +L      ++    + Y    LAA  G++ +++ 
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 118 LLAHRANVNSQD--NEGHSVVHWATVCGEVEALETVLSAGAEPSTPDI--HGGYPIHYAS 173
           L              E +     A   G +  L  +       +T  I     Y   +A+
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 174 QMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ-------PILWAASAGSSDAI 226
              GH             V+  LL   V +   +    +       P +        +  
Sbjct: 205 VGRGH-----------HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253

Query: 227 LALVKAGAN---------VEAHDKDGLTALHCAASRGHRECLETLITLCG----ADVDVI 273
            A   +  +                 L  L         + +  L+++ G    A    I
Sbjct: 254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 313

Query: 274 DTNGCSALFYAVTLGHADATTLLLQYG 300
             +    L  A+ LG+  A  LLL   
Sbjct: 314 PGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.0 bits (165), Expect = 2e-13
 Identities = 22/134 (16%), Positives = 32/134 (23%), Gaps = 6/134 (4%)

Query: 189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDA---ILALVKAGANVEAHDKDGLT 245
                +       D +            AA  G S A   +  L+ +   V+    +   
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTN--GCSALFYAVTLGHADATTLLLQYGATP 303
           A   AA  GH   L  L         +         A   A   GH      L +   T 
Sbjct: 129 AFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 304 NRQDRKGRTYEYQW 317
                +   Y    
Sbjct: 188 ATAMIQAENYYAFR 201

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 95.6 bits (236), Expect = 2e-23
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 25/270 (9%)

Query: 38  AAQQGKDAEVKAILASRPNAVRERDRTRK--------TVLHYCAENTILSCAETILEVAP 89
            A+Q ++ ++K  + S  +      + +K         V      +        +LE   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
           D I  A+ DG T LH A I  NV ++  L+ + AN+N  DNEG   +H A  CG ++  E
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAV---------------LK 194
            ++S GA     +  G  P+  A +            R G+ +                +
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183

Query: 195 VLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRG 254
            L   +++     K G   +  AA+ G ++ +  L++A  +V   D DG T LH AA  G
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 255 HRECLETLITLCGADVDVIDTNGCSALFYA 284
             E    L+     D++ ++  G +A   A
Sbjct: 244 KEEACRILVE-NLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.9 bits (185), Expect = 2e-16
 Identities = 58/245 (23%), Positives = 90/245 (36%), Gaps = 17/245 (6%)

Query: 23  KKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAE 82
           KK     +     + A   G   EV  +L    + +   +    T LH    +  +    
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNV-DMV 89

Query: 83  TILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVC 142
             L      I   D +G+ PLH AA  G + +   L++  A+V + ++EG + +  A   
Sbjct: 90  KFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

Query: 143 GEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVG------------- 189
              E L+  ++               I          S   NDVR               
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK 209

Query: 190 --LAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTAL 247
               VLK+L+    DVN+ D DG  P+  AA  G  +A   LV+   ++EA +K G TA 
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 248 HCAAS 252
             A  
Sbjct: 270 DVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 242 DGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
           D       A S G  E +  L+   GAD++  + +G +AL  A    + D    L++ GA
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 302 TPNRQDRKGRTYEYQW 317
             N+ D +G    +  
Sbjct: 98  NINQPDNEGWIPLHAA 113

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRT 312
           +  +  +    A + G  +    LL+ GA  N  +  G T
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLT 75

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 92.5 bits (228), Expect = 2e-22
 Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 13/274 (4%)

Query: 36  MYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL---- 91
           ++    G  A  + I     N +  R    +TVLH+ A N+    +E ++          
Sbjct: 6   LHTEAAGSYAITEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 92  ---IEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEAL 148
              + A D D  TPL LA +A    L+  L+   A+    +    S +H A    +   +
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMM 123

Query: 149 ETVLSAGAEPSTPDIHGGYPIHYASQMC--GHASEMGNDVRVGLAVLKVLLHHNVDVNVV 206
             +L++       +      +     +       ++ +   +     KV        +  
Sbjct: 124 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 183

Query: 207 DKDGRQPILWAASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLETLITL 265
              GR  + +AA   +   +  LV   G+N +  D+DG T +  AA  G  E +  LI  
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ- 242

Query: 266 CGADVDVIDTNGCSALFYAVTLGHADATTLLLQY 299
            GA V+ +D    +A   A    H +   +  + 
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.9 bits (198), Expect = 3e-18
 Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 29/262 (11%)

Query: 69  LHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR------ 122
           LH  A  +  +  E I   + ++I+       T LH  A   +      L+ H       
Sbjct: 6   LHTEAAGS-YAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 123 --ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS 180
             A+VN+ D + ++ +  A +                            + + +   H +
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRR--------LVAYLMKAGADPTIYNKSERSALHQA 114

Query: 181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD----------AILALV 230
               D  + + +L           +        ++ A + G                   
Sbjct: 115 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 174

Query: 231 KAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHA 290
              A  ++    G TALH AA   +   ++ L+   G++ D  D +G + +  A   G  
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 234

Query: 291 DATTLLLQYGATPNRQDRKGRT 312
           +    L+Q GA+    D    T
Sbjct: 235 EVVMYLIQQGASVEAVDATDHT 256

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 8e-08
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 16  WENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN 75
            +     +K     +G T+L YAAQ      VK ++  + +   ++D   KT +   A+ 
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231

Query: 76  TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR 122
             +     +++     +EA D   +T   LA    +  ++      R
Sbjct: 232 GRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 1e-19
 Identities = 55/236 (23%), Positives = 80/236 (33%), Gaps = 11/236 (4%)

Query: 67  TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVN 126
             LH           + +L   P L+   D+DG  PLH +       +   LL+   NVN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 127 SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDV 186
             D    S      +   V  LE          +       P        G         
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEV-------VKSLYDRPLKPDLNKITNQGVTCLHLAVG 114

Query: 187 RVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGLT 245
           +    V + L+ +   V + DK  + P+  AAS GS   I  L   G + V   DK G T
Sbjct: 115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 246 ALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGA 301
            L  A + GH +    L+   GA+ D++D  G  A   A+   +       L    
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 3e-15
 Identities = 52/214 (24%), Positives = 81/214 (37%), Gaps = 9/214 (4%)

Query: 101 TPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPS 159
            PLH A +      +  LL +  + +  +D +G   +HW+      E    +LS     +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 160 TPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS 219
             D             C   +                     D+N +   G   +  A  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVK-------SLYDRPLKPDLNKITNQGVTCLHLAVG 114

Query: 220 AGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCS 279
               +    L++ GA+V   DK     LH AAS G  + +E L  L  + V+  D  G +
Sbjct: 115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 280 ALFYAVTLGHADATTLLL-QYGATPNRQDRKGRT 312
            LF+A+  GH DA  LL+ +YGA  +  D KG  
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 13/73 (17%), Positives = 26/73 (35%)

Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN 304
             LH A        ++ L+    + +   D +G   L ++V+    + T+ LL      N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 305 RQDRKGRTYEYQW 317
             D    +    +
Sbjct: 62  LDDYPDDSGWTPF 74

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 4/142 (2%)

Query: 16  WENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAEN 75
             +      ++       + ++ A   K  EV   L     +VR +D+  +  LH  A  
Sbjct: 89  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 148

Query: 76  TILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHS 134
             L   E +  +    +   D+ G+TPL  A   G+      L+  + A  +  DN+G  
Sbjct: 149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 208

Query: 135 VVHWATVCGEVEALETVLSAGA 156
               A      +  +  L+   
Sbjct: 209 AEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 26  HNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETIL 85
                    L  AA  G    ++ +     +AV  +D+   T L +         A  ++
Sbjct: 133 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 192

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRAN 124
           E      +  D  G     +A    N  +    L +  +
Sbjct: 193 EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 35/231 (15%), Positives = 64/231 (27%), Gaps = 42/231 (18%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +G   L ++           +L+   N   +          +    ++ +          
Sbjct: 33  DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS---- 88

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
                                           + ++N   N+G + +H A      E  +
Sbjct: 89  --------------------------LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            ++  GA     D     P+H A+ +                           VN  DK 
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-----------LGKSAVNWQDKQ 171

Query: 210 GRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAASRGHRECL 259
           G  P+  A + G  DA + LV K GA  +  D  G  A   A +   ++  
Sbjct: 172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 4e-19
 Identities = 53/222 (23%), Positives = 83/222 (37%), Gaps = 12/222 (5%)

Query: 98  DGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS 153
           DG + LHLA I         +I  +    A +N Q+N   + +H A +  + E  E +L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 154 AGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQP 213
           AG +P   D  G  P+H A +    AS                 H +  +   + +G   
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS------CTTPHLHSILKATNYNGHTC 114

Query: 214 ILWAASAGSSDAILALVKAGANV-EAHDKDGLTALHCAASRGHRECLETLITLCGADVDV 272
           +  A+  G    +  LV  GA+V      +G TALH A    + + +  L+  CGADV+ 
Sbjct: 115 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNR 173

Query: 273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYE 314
           +   G S                L Q      +   +    E
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 215

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 7e-11
 Identities = 39/247 (15%), Positives = 70/247 (28%), Gaps = 37/247 (14%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +G + L  A    + A    ++                                 ++   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVI-------------------------------RQVKGDL 29

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             +   +    TPLHLA I     +   LL    +   +D  G++ +H A   G + ++ 
Sbjct: 30  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 89

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
            +  +   P    I      +        AS  G    V L V                +
Sbjct: 90  VLTQSCTTPHLHSIL-KATNYNGHTCLHLASIHGYLGIVELLV----SLGADVNAQEPCN 144

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGAD 269
           GR  +  A    + D +  L+K GA+V      G +       R      + L  L   +
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLE 203

Query: 270 VDVIDTN 276
              +   
Sbjct: 204 NLQMLPE 210

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 6e-19
 Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 97  EDGYTPLHLAAIAGNVP----LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVL 152
           EDG TPLH+A + GN+P    L++        ++  +N   + +H A +      +  ++
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 153 SAGAEPSTPDIHGGYPIHYASQMC-------------------------GHASEMGNDVR 187
           +AGA P   D HG    H A +                           G  +       
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 188 VGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAIL-ALVKAGANVEAHDKDGLTA 246
                +++LL    D++ VD    +  L  A   +S +++  L++ GANV A    G +A
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 247 LHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD 291
           LH A+ RG    + TL+   GAD  + + +  + L  A +    D
Sbjct: 181 LHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-16
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 29/223 (13%)

Query: 66  KTVLHYCAENTILSCAETILEVAPDL---IEAADEDGYTPLHLAAIAGNVPLIHTLLAHR 122
            T LH       L     ++ +       ++  +    TPLHLA I     ++  L+   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 123 ANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEM 182
           A+  + D  G +  H A        L  +L + A  +       Y    A  +  +    
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 183 GNDV--------------------------RVGLAVLKVLLHHNVDVNVVDKDGRQPILW 216
                                            L+++++LL H  +VN     G   +  
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 217 AASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
           A+  G    +  LV++GA+    +    T L  A SR   + L
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.1 bits (193), Expect = 5e-18
 Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 12/217 (5%)

Query: 80  CAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA 139
               +L    +L    D+ G T LHLAA          LL   A+ NSQDN G + +H A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 140 TVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
                +                 +        A    G    +         +++ L+  
Sbjct: 64  VAADAM-----------GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 112

Query: 200 NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL 259
           + D+N  D  G+  + WAA+  +++A+  L+   AN +A D    T L  AA  G  E  
Sbjct: 113 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEAS 172

Query: 260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL 296
           + L+    A+ ++ D         A    H D   LL
Sbjct: 173 KALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.3 bits (139), Expect = 1e-10
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 13/200 (6%)

Query: 114 LIHTLLAHRANVNS-QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYA 172
           +I  LLA  A +N+  D  G + +H A      +A + +L AGA+ ++ D  G  P+H A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 173 SQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKA 232
                                    +   ++N    DG  P++ AA       +  L+ A
Sbjct: 64  VAADAMGVFQILLR-----------NRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 112

Query: 233 GANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADA 292
            A++ A D  G TALH AA+  + E +  L+    A+ D  D    + LF A   G  +A
Sbjct: 113 DADINAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEA 171

Query: 293 TTLLLQYGATPNRQDRKGRT 312
           +  LL   A     D   R 
Sbjct: 172 SKALLDNFANREITDHMDRL 191

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 1e-09
 Identities = 50/233 (21%), Positives = 77/233 (33%), Gaps = 46/233 (19%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
            G TSL  AA+    A+    L         +D T +T LH       +   + +L    
Sbjct: 22  TGETSLHLAARFA-RADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
             + A   DG TPL LAA      ++  L+   A++N+ DN G + +HWA          
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN------ 134

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKD 209
                                  + +                       H+ + +  D  
Sbjct: 135 ------------------NTEAVNILL---------------------MHHANRDAQDDK 155

Query: 210 GRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
              P+  AA  GS +A  AL+   AN E  D         A+ R H + +  L
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 192 VLKVLLHHNVDVNV-VDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA 250
           V+  LL    ++N  +DK G   +  AA    +DA   L+ AGA+  + D  G T LH A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 251 ASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKG 310
            +       + L+     +++    +G + L  A  L        L+   A  N  D  G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 311 RTYEYQW 317
           +T  +  
Sbjct: 124 KTALHWA 130

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 6e-12
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 99  GYTPLHLAAIAGNVPLIHTLL-AHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
               L  AA  G+V  +  LL     + ++ +  G + +          ALE +    + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
                         A        ++                H  DVNV D  G  P +  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV-------------EHGADVNVPDGTGALP-IHL 107

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
           A      A+++ + A +++   D  GLT L  A  RG ++ ++ L 
Sbjct: 108 AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 58  VRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHT 117
           V   D T    +H   +    +    +   +   +   D  G TPL LA   G   L+  
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDI 151

Query: 118 LLAH 121
           L  H
Sbjct: 152 LQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 15/169 (8%)

Query: 31  GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPD 90
               L  AA +G   EV+ +L          +R  KT L      +     E + + A  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 91  LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALET 150
            ++                 +   +     H A+VN  D  G   +H A   G    +  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV--EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 151 VLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHH 199
           +  A ++    D  G  P+  A Q  G              ++ +L  H
Sbjct: 120 LA-AESDLHRRDARGLTPLELALQ-RGA-----------QDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 245 TALHCAASRGHRECLETLITLCGADVDVIDTNGCS 279
             L  AA+RG  + +  L+       D ++  G +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (143), Expect = 1e-11
 Identities = 37/165 (22%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 98  DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE 157
           D    L  AA AG    +  L+A+ A   +    G S +H A   G              
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQYGH------------F 47

Query: 158 PSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWA 217
            +T  +        A                   +++VLL H  DVN  D      + WA
Sbjct: 48  STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107

Query: 218 ASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL 262
                 + +  L+K GA+V    K   TA   +   G+ +  E L
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 30  EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAP 89
           +    L+ AA+ G+D EV+ ++A+      +   T    L     +   +        A 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR---AG 57

Query: 90  DLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALE 149
              +A  +   TPLH+AA  G+  ++  LL H A+VN++D    + +HWAT     E +E
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 150 TVLSAGAEPSTPDIHGGYPIHYASQMCGH 178
            ++  GA+  T           +    G+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISID-NGN 145

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 5e-11
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 12/163 (7%)

Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
             L  AA  G++  + +LL +  NVN+Q+  G + +    +          L        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI--ARRLLLRGANPD 60

Query: 161 PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASA 220
                G+ + + +   G    +   +     V       N+ +++  K+G   ++     
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 221 GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLI 263
            ++           NV   +  G TA   A   G  E +  + 
Sbjct: 121 HTAS----------NVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-06
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 13/164 (7%)

Query: 137 HWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVL 196
             A   G++E L ++L      +  +  G   +          +                
Sbjct: 6   ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL------------ 53

Query: 197 LHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR 256
                + ++ D+ G   I  AA AG  D +  L++  A+V   D +G   LH AA  GH 
Sbjct: 54  -LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 112

Query: 257 ECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
             +E L+    ++V   +  G +A   A   G  +  +L+   G
Sbjct: 113 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 279 SALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW 317
           + L  A   G  +  T LLQ     N Q+  GRT     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM 41

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 137 HWATVCGEVEALETVLSAGAEPSTP------DIHGGYPIHYASQMCGHASEMGNDVRVGL 190
             A    ++  L    + G + +               +H A +     S         L
Sbjct: 11  CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS---------L 61

Query: 191 AVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA 250
            ++  L+ ++ +++     G   + +     +++ +  L++  A++E  ++ G T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 251 ASRGHRECLETLI 263
               H  C E L 
Sbjct: 122 KRLKHEHCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 13/138 (9%)

Query: 190 LAVLKVLLHHNVDVNV------VDKDGRQPILWAASA---GSSDAILALVKAGANVEAHD 240
           +  L       VD+          +     +  A  +    S   +  LV+   N++   
Sbjct: 19  IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT 78

Query: 241 KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG 300
             G TALH      + ECL+ L+    A +++ + +G + L  A  L H     LL Q  
Sbjct: 79  GKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 137

Query: 301 ATPNRQDRKGRTYEYQWR 318
           +    +       EY+WR
Sbjct: 138 S---GRFNSHVHVEYEWR 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 62  DRTRKTVLHYCAENTILSCAETILE-----VAPDLIEAADEDGYTPLHLAAIA---GNVP 113
              +   L    +   +                  +    E   T LHLA  +    ++ 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS 173
           ++  L+ +  N++ Q  +G + +H+  +    E L+ +L   A     +  G  P+  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 174 QMCGH 178
           ++  H
Sbjct: 123 RL-KH 126

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 7/142 (4%)

Query: 33  TSLMYAAQQGKDAEVKAILA-----SRPNAVRERDRTRKTVLHYCAENTILSCAETI--L 85
            SL  A +      +    A     +    +       +T LH    +   +    +  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 86  EVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV 145
                 ++     G T LH   +  N   +  LL  +A++   +  G + +  A      
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 146 EALETVLSAGAEPSTPDIHGGY 167
              E +  A +      +H  Y
Sbjct: 128 HCEELLTQALSGRFNSHVHVEY 149

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 134 SVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVL 193
           +++  +++ GE + ++ ++    +PS P+  G   +H A                     
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-------- 54

Query: 194 KVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHD-KDGLTA--LHCA 250
                  V+VN  D DG  P+  AAS  +      LV++GA V A    D  TA      
Sbjct: 55  ----QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 110

Query: 251 ASRGHRECLETLI 263
              G+ +C + L 
Sbjct: 111 MEEGYTQCSQFLY 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 15/139 (10%)

Query: 101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPST 160
             L  +++ G   L+  ++    + +  ++EG + +H A   G                 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH------------TEIV 50

Query: 161 PDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ---PILWA 217
             +        A+   G            + V K L+     V  +     Q        
Sbjct: 51  KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 110

Query: 218 ASAGSSDAILALVKAGANV 236
              G +     L      +
Sbjct: 111 MEEGYTQCSQFLYGVQEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 12/136 (8%)

Query: 97  EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGA 156
           E     L  AA  G V  +  LL   AN N+ ++ G   +    +     A   +L    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 157 EPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW 216
                      P+H A++     + +                    ++V D  GR P+  
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLH------------RAGARLDVRDAWGRLPVDL 108

Query: 217 AASAGSSDAILALVKA 232
           A   G  D    L  A
Sbjct: 109 AEELGHRDVARYLRAA 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (77), Expect = 0.004
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 137 HWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVL 196
            WA   G+++ ++  ++ G + +     G  P+HYA+                       
Sbjct: 7   MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL----------- 55

Query: 197 LHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHR 256
                D+N  DK    P+L A   G    +  L+  GA+      DGLTAL    ++  +
Sbjct: 56  -LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIK 114

Query: 257 ECLE 260
             L+
Sbjct: 115 ALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-48  Score=329.17  Aligned_cols=219  Identities=29%  Similarity=0.400  Sum_probs=185.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcc
Q psy138           98 DGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCG  177 (321)
Q Consensus        98 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (321)
                      .+.++++.|+..++.+++++|+++|.+++..+..|.+||++|+..++.+++++|+++|++++..+..|.+|++.+.....
T Consensus       131 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~  210 (408)
T d1n11a_         131 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ  210 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccch
Confidence            34444445555555666777777777788888888899999999999999999999999988888888888887765422


Q ss_pred             ccc---------------cc------ccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCc
Q psy138          178 HAS---------------EM------GNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV  236 (321)
Q Consensus       178 ~~~---------------~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  236 (321)
                      ...               ..      ........++++++...+...+..+..|.||++.|+..++.+++++|+++|+++
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~  290 (408)
T d1n11a_         211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV  290 (408)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             hhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc
Confidence            100               00      001234567888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcccee
Q psy138          237 EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQ  316 (321)
Q Consensus       237 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~  316 (321)
                      +..+..+.||||.++..+..++++++++ .|++++.+|..|.||||+|++.|+.+++++|+++||+++.+|++|+||||+
T Consensus       291 ~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         291 DATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             ccccccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            9999999999999999999999999999 699999999999999999999999999999999999999999999999998


Q ss_pred             e
Q psy138          317 W  317 (321)
Q Consensus       317 ~  317 (321)
                      +
T Consensus       370 A  370 (408)
T d1n11a_         370 A  370 (408)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-42  Score=295.05  Aligned_cols=296  Identities=24%  Similarity=0.327  Sum_probs=237.7

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHH
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA   81 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   81 (321)
                      ++++++|++++..        .+ ..+..|.||||+|++.|+.+++++||+.+.+ ++.++..|.||||+|+..|+.+++
T Consensus        13 ~~~v~~Ll~~g~~--------in-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~~~~~   82 (408)
T d1n11a_          13 LPIVKNLLQRGAS--------PN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMV   82 (408)
T ss_dssp             HHHHHHHHHTTCC--------SC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHCCCC--------CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            4678888877432        22 1245699999999999999999999999865 888899999999999999888888


Q ss_pred             HHHHHhCCcc-----------------------------------------------------------------ccccC
Q psy138           82 ETILEVAPDL-----------------------------------------------------------------IEAAD   96 (321)
Q Consensus        82 ~~Ll~~~~~~-----------------------------------------------------------------~~~~~   96 (321)
                      ++|+......                                                                 ++..+
T Consensus        83 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~  162 (408)
T d1n11a_          83 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG  162 (408)
T ss_dssp             HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence            7776542210                                                                 33445


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhc
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMC  176 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~  176 (321)
                      .+|.+||++|+..|+.+++++|+++|++++..+..|.||++.++.....++...++..+......+..+.||++.++...
T Consensus       163 ~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  242 (408)
T d1n11a_         163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG  242 (408)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhC
Confidence            67899999999999999999999999999888777777777777777777777777666666666666666666654432


Q ss_pred             cccc---------------------ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCC
Q psy138          177 GHAS---------------------EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGAN  235 (321)
Q Consensus       177 ~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  235 (321)
                      ....                     ........+.+++++|+++|++++..+..+.|||+.++..++.++++++++.|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~  322 (408)
T d1n11a_         243 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD  322 (408)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             cHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccc
Confidence            1100                     0000124567999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH---HHcCCCCCccCC
Q psy138          236 VEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL---LQYGATPNRQDR  308 (321)
Q Consensus       236 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L---l~~ga~~~~~~~  308 (321)
                      ++.+|.+|.||||+|++.|+.+++++|++ +|++++.+|.+|.||||+|++.|+.+++++|   ++.+++....|+
T Consensus       323 in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999 7999999999999999999999999988765   455777766664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-41  Score=273.21  Aligned_cols=266  Identities=28%  Similarity=0.344  Sum_probs=237.5

Q ss_pred             ccChhHHHHHHHcCCHHHHHHHHHcCCCccccc-ccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           29 MEGATSLMYAAQQGKDAEVKAILASRPNAVRER-DRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        29 ~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      .++.|+||.|++.|+.++|++||+.|.+ ++.+ +..|.||||+|+..|+.+++++|++.+.. ....+..+.+|.++|+
T Consensus         3 ~~~~~~L~~Ai~~~~~e~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhhHHHh
Confidence            4588999999999999999999999866 6544 45799999999999999999999999887 5667778899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCCCchhhhHhhhcc
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTP----------DIHGGYPIHYASQMCG  177 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~----------~~~~~~~l~~~~~~~~  177 (321)
                      ..+..+...++++...+....+..+.++++.|+..+....++.++....+.+..          ...|.||+++|++.  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--  158 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--  158 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHc--
Confidence            999999999999998888788889999999999999999999999987766543          34589999999874  


Q ss_pred             cccccccchhhhHHHHHHHHHc-CCCCcccCCCCCchhHHHHhc----CCHHHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy138          178 HASEMGNDVRVGLAVLKVLLHH-NVDVNVVDKDGRQPILWAASA----GSSDAILALVKAGANVEAHDKDGLTALHCAAS  252 (321)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~  252 (321)
                                ...+++++|+++ |++++..+..+.++...+...    +..+++++|+++|++++.++..|.||||.|+.
T Consensus       159 ----------~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~  228 (285)
T d1wdya_         159 ----------GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             ----------TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             ----------CCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh
Confidence                      457899999864 889999999998888766543    34468999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q psy138          253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDR  308 (321)
Q Consensus       253 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~  308 (321)
                      .|+.+++++|++..|++++.+|.+|.||||+|+++|+.+++++|+++|||++.+|.
T Consensus       229 ~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999877999999999999999999999999999999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-43  Score=277.44  Aligned_cols=241  Identities=20%  Similarity=0.189  Sum_probs=172.4

Q ss_pred             cccCCccHHHHHHHcCcHHHHHHHHHhCCc--cccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHH
Q psy138           61 RDRTRKTVLHYCAENTILSCAETILEVAPD--LIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHW  138 (321)
Q Consensus        61 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~  138 (321)
                      .+.+|.||||+||+.|+.+++++|+++++.  .++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            456778888888888888888888777543  345566777788888888888888888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCC-chhhhHhhhcc-cccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHH
Q psy138          139 ATVCGEVEALETVLSAGAEPSTPDIHGG-YPIHYASQMCG-HASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILW  216 (321)
Q Consensus       139 a~~~~~~~i~~~L~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  216 (321)
                      |+..++.+++++|++.+........... ........... ......................+.+++.++..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            8888888888887776543221110000 00000000000 000000000011112222233455677888999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy138          217 AASAGSSDAILALVKAGANVEAH-DKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTL  295 (321)
Q Consensus       217 a~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  295 (321)
                      |+..++.+++++|++++++.+.. +..|.||||+|+..++.+++++|++ +|++++.+|..|.||||+|+..++.+++++
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999999999999999998865 5789999999999999999999999 799999999999999999999999999999


Q ss_pred             HHHcCCC
Q psy138          296 LLQYGAT  302 (321)
Q Consensus       296 Ll~~ga~  302 (321)
                      |+++||+
T Consensus       244 Ll~~Ga~  250 (255)
T d1oy3d_         244 LRAHGAP  250 (255)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-42  Score=265.18  Aligned_cols=220  Identities=24%  Similarity=0.334  Sum_probs=178.5

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      +.++|+.+|+.|+.+.++.+|+..+..++.+|..|+||||+|+..|+.++++++++.... ....+..+.++++.|+..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccccccccccccccc
Confidence            457888899999999999999888888888899999999999999999999999988876 4556667888999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhH
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGL  190 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (321)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.                              
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~------------------------------  131 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA------------------------------  131 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------------------
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC------------------------------
Confidence            99999999999999888888899999999888888888877776665544                              


Q ss_pred             HHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCc
Q psy138          191 AVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADV  270 (321)
Q Consensus       191 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  270 (321)
                                     .+..+.||||.|+..+..+++++|.+.+.+++..|..|+||||.|+..|+.+++++|++ .|+++
T Consensus       132 ---------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~  195 (223)
T d1uoha_         132 ---------------KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASI  195 (223)
T ss_dssp             ---------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCS
T ss_pred             ---------------cCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHH-CCCCC
Confidence                           44456667777777777777777777777777777778888888888888888888877 57888


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy138          271 DVIDTNGCSALFYAVTLGHADATTLLLQ  298 (321)
Q Consensus       271 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  298 (321)
                      +.+|.+|+||||+| ..|+.+++++|++
T Consensus       196 ~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         196 YIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            87787888888777 4577777777775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=262.30  Aligned_cols=209  Identities=27%  Similarity=0.381  Sum_probs=186.9

Q ss_pred             CccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCC
Q psy138           65 RKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGE  144 (321)
Q Consensus        65 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  144 (321)
                      +.+.++.+|..|+.+.++.+++..+..++..|..|+||||+|+..|+.+++++|++.+......+..+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            45788888999999998888888877788888889999999999999999999988888888777888888888888888


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHH
Q psy138          145 VEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSD  224 (321)
Q Consensus       145 ~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  224 (321)
                      .+++++|+++|++                                             ++..+..|.||||+|+..|+.+
T Consensus        83 ~~i~~~Ll~~~~d---------------------------------------------~~~~d~~g~tpL~~A~~~~~~e  117 (223)
T d1uoha_          83 DEIVKALLGKGAQ---------------------------------------------VNAVNQNGCTPLHYAASKNRHE  117 (223)
T ss_dssp             HHHHHHHHHTTCC---------------------------------------------TTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cchhHHHhccCce---------------------------------------------eEeeCCCCCchhhHHHHcCCHH
Confidence            8777777766554                                             4445667888999999999999


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy138          225 AILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPN  304 (321)
Q Consensus       225 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~  304 (321)
                      ++++|+++|++++..+..|.||||+|+..++.+++++|.+ .+.+++.+|..|+||||+|+..|+.+++++|+++||+++
T Consensus       118 ~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999999 799999999999999999999999999999999999999


Q ss_pred             ccCCCCCccceeecc
Q psy138          305 RQDRKGRTYEYQWRS  319 (321)
Q Consensus       305 ~~~~~g~t~l~~~~~  319 (321)
                      .+|..|+||||++++
T Consensus       197 ~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         197 IENKEEKTPLQVAKG  211 (223)
T ss_dssp             CCCTTSCCHHHHCCT
T ss_pred             CCCCCCCCHHHHHHC
Confidence            999999999998753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-40  Score=257.81  Aligned_cols=222  Identities=25%  Similarity=0.368  Sum_probs=156.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHhC
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDL--IEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~t~l~~A~~~~  110 (321)
                      +|||+||+.|+.+.+++||+..+..++.+|.+|.||||+|+..|+.+++++|+++++++  ....+..|.+|+++|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            56666666666666666666555555556666666666666666666666666655432  1233445555666666655


Q ss_pred             CHHHHHHHHHcCCCCc--cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhh
Q psy138          111 NVPLIHTLLAHRANVN--SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRV  188 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~--~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (321)
                      ..++++.++..+...+  ..+..+.|+++.++..++.+                                          
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------  119 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE------------------------------------------  119 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHH------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccchhh------------------------------------------
Confidence            5665555555544322  23334445555555554444                                          


Q ss_pred             hHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcC
Q psy138          189 GLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAG-ANVEAHDKDGLTALHCAASRGHRECLETLITLCG  267 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  267 (321)
                         +++.|+..+.+.+..+..|.||||.|+..|+.+++++|++.+ .+++.+|.+|+||||+|+.+|+.+++++|++..|
T Consensus       120 ---~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g  196 (229)
T d1ixva_         120 ---VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  196 (229)
T ss_dssp             ---HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             ---hhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcC
Confidence               445555555555666777889999999999999999999987 6788999999999999999999999999998679


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy138          268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYGAT  302 (321)
Q Consensus       268 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~  302 (321)
                      ++++.+|..|.||||+|+.   .+++++|+++|+|
T Consensus       197 ad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         197 AEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             CCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            9999999999999999974   5899999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.4e-40  Score=265.05  Aligned_cols=255  Identities=22%  Similarity=0.305  Sum_probs=207.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHH--------hCCccccccCCCCCcHHH
Q psy138           33 TSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILE--------VAPDLIEAADEDGYTPLH  104 (321)
Q Consensus        33 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~~~~~~~~~~~~~~t~l~  104 (321)
                      ||||++++.+..+.++++|.+....... +..|.||||+||..|+.+++++|+.        .|++ ++..|.+|.||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeeec
Confidence            7888666665555555555444333222 2469999999999999999988754        4566 6788999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCchhhhHhhhcccccc
Q psy138          105 LAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAG---AEPSTPDIHGGYPIHYASQMCGHASE  181 (321)
Q Consensus       105 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (321)
                      +|+..|+.+++++|+++|++++..+..|.||+++|+..++.++++++...+   ..++..+..+.++...+.....    
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  155 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG----  155 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS----
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccc----
Confidence            999999999999999999999999999999999999999999999988664   3455566777777777655432    


Q ss_pred             cccchhhhHHHHHHHHHcCCC--------CcccCCCCCchhHHHHhcCCHHHHHHHH-HcCCCcccccCCCCcHHHHHHH
Q psy138          182 MGNDVRVGLAVLKVLLHHNVD--------VNVVDKDGRQPILWAASAGSSDAILALV-KAGANVEAHDKDGLTALHCAAS  252 (321)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~g~t~l~~a~~  252 (321)
                           ......+..+......        .+..+..+.||||.++..++.+++++++ ..+.+.+.+|..|.||||+|+.
T Consensus       156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~  230 (277)
T d2fo1e1         156 -----RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  230 (277)
T ss_dssp             -----TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             -----ccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence                 2234455555554322        3345567899999999999999998755 6788999999999999999999


Q ss_pred             cCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          253 RGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       253 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      .|+.+++++|++ .|++++.+|.+|.||||+|++.|+.+++++|+++
T Consensus       231 ~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         231 EGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999 7999999999999999999999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.9e-40  Score=267.35  Aligned_cols=248  Identities=21%  Similarity=0.272  Sum_probs=197.3

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAA  107 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  107 (321)
                      ..++.|+|+.||+.|+.++|++||+.|.+ ++.+|.+|.||||+|+..|+.+++++|++++.. ....+..+.+||++|+
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAA  114 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccccccc
Confidence            35688999999999999999999998866 889999999999999999999999999999877 5677788999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchh
Q psy138          108 IAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVR  187 (321)
Q Consensus       108 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (321)
                      ..++.+++++|+++|+..+..+..+.+|+++|+..+..+.++.++......         . .......        ...
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~---------~-~~~~~~~--------~~~  176 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD---------I-EAARKEE--------ERI  176 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC---------H-HHHHHHH--------HHH
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccc---------c-ccccccc--------ccc
Confidence            999999999999999999999999999999999999999999988643211         0 0000000        001


Q ss_pred             hhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcC
Q psy138          188 VGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCG  267 (321)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  267 (321)
                      ........+.....+....+..+.||||.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++ +|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~-~G  255 (291)
T d1s70b_         177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NL  255 (291)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             ccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHH-CC
Confidence            11233444444555555666778888888888888888888888888888888888888888888888888888887 68


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          268 ADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       268 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      +|++.+|..|.||||+|++    +++++|.+..
T Consensus       256 adv~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         256 CDMEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             CCTTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            8888888888888888864    4666666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-38  Score=251.68  Aligned_cols=228  Identities=23%  Similarity=0.209  Sum_probs=183.1

Q ss_pred             cccChhHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHH
Q psy138           28 TMEGATSLMYAAQQGKDAEVKAILASRPN--AVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHL  105 (321)
Q Consensus        28 ~~~g~~~L~~A~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  105 (321)
                      +.+|.||||+||+.|+.+++++||+.+..  .++.++..|.||||+|+..|+.+++++|++++.+ ++..+.+|.||||+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHL   84 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchhhhh
Confidence            56799999999999999999999997643  4678889999999999999999999999999988 68889999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccCCCC----------CCcHHHHHHhcC----CHHHHHHHHHcCCCCCCCCCCCCchhhh
Q psy138          106 AAIAGNVPLIHTLLAHRANVNSQDNE----------GHSVVHWATVCG----EVEALETVLSAGAEPSTPDIHGGYPIHY  171 (321)
Q Consensus       106 A~~~~~~~~v~~Ll~~~~~~~~~~~~----------~~t~l~~a~~~~----~~~i~~~L~~~~~~~~~~~~~~~~~l~~  171 (321)
                      |+..++.+++++|++.+.........          ..+....+....    ...........+.+++..+..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            99999999999999876543221110          001111111111    1111122223355667788999999999


Q ss_pred             HhhhcccccccccchhhhHHHHHHHHHcCCCCccc-CCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Q psy138          172 ASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVV-DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCA  250 (321)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a  250 (321)
                      |+..            .+.+++++|++.+.+.+.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       165 A~~~------------~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         165 AVIH------------KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             HHHT------------TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccc------------cccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9873            4579999999999988864 57899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhhcCCC
Q psy138          251 ASRGHRECLETLITLCGAD  269 (321)
Q Consensus       251 ~~~~~~~~~~~Ll~~~~~~  269 (321)
                      +..++.+++++|++ +|++
T Consensus       233 ~~~~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         233 LLRPNPILARLLRA-HGAP  250 (255)
T ss_dssp             HTSSCHHHHHHHHH-TTCC
T ss_pred             HHCCCHHHHHHHHH-cCCC
Confidence            99999999999999 7997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.5e-37  Score=251.29  Aligned_cols=256  Identities=27%  Similarity=0.330  Sum_probs=209.9

Q ss_pred             CCHHHHHHHHHcCCCccc--------ccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHH
Q psy138           42 GKDAEVKAILASRPNAVR--------ERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVP  113 (321)
Q Consensus        42 g~~~~~~~ll~~~~~~~~--------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~  113 (321)
                      ...+.++.++........        ..+..+.|+|+.||..|+.++|++|+++|++ ++..+.+|.||||+|+..|+.+
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~e   87 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVD   87 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCce
Confidence            344667777765543211        1123456999999999999999999999988 6888999999999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHH
Q psy138          114 LIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVL  193 (321)
Q Consensus       114 ~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (321)
                      ++++|+++|.+....+..+.+|++.++..++.++++.|+++|......+..+.+++++++.            ....+.+
T Consensus        88 iv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~  155 (291)
T d1s70b_          88 MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE------------EAMEELL  155 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS------------HHHHHHH
T ss_pred             eeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccc------------cccchhc
Confidence            9999999999999999999999999999999999999999999999999999999998875            3445666


Q ss_pred             HHHHHc-CCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy138          194 KVLLHH-NVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDV  272 (321)
Q Consensus       194 ~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  272 (321)
                      ..++.. +.++......       ............+.....+....+..|.||||.|+..|+.+++++|++ .|++++.
T Consensus       156 ~~ll~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~  227 (291)
T d1s70b_         156 QNEVNRQGVDIEAARKE-------EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNI  227 (291)
T ss_dssp             HHHHHHHTCCHHHHHHH-------HHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTC
T ss_pred             ccccccccccccccccc-------ccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc-ceecccc
Confidence            666643 3332221111       111112233344445556666778899999999999999999999999 7999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          273 IDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       273 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      ++..|.||||+|+..|+.+++++|+++|||++.+|+.|+||||++.
T Consensus       228 ~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999963

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-38  Score=244.47  Aligned_cols=197  Identities=21%  Similarity=0.267  Sum_probs=164.3

Q ss_pred             ccccccChhHHHHHHHcCCHHHHHHHHHcCCCc--ccccccCCccHHHHHHHcCcHHHHHHHHHhCCcc-ccccCCCCCc
Q psy138           25 VHNTMEGATSLMYAAQQGKDAEVKAILASRPNA--VRERDRTRKTVLHYCAENTILSCAETILEVAPDL-IEAADEDGYT  101 (321)
Q Consensus        25 ~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~t  101 (321)
                      ...+.+|.||||+|+..|+.+++++||+.+...  ....+..|.+|+|+|+..+..++++.++..+... ....+..+.|
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345678999999999999999999999987642  3456778999999999999999999998887542 3455677899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccc
Q psy138          102 PLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASE  181 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (321)
                      |++.++..++.+++++|++.|.+.+..+..|.|||++|+..|+.+++++|++.+.                         
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-------------------------  162 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-------------------------  162 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC-------------------------
T ss_pred             ccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccc-------------------------
Confidence            9999999999999999999999999999999999999999999999998887642                         


Q ss_pred             cccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          182 MGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVK-AGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                         .+++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+   +.++++
T Consensus       163 -------------------~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~  220 (229)
T d1ixva_         163 -------------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKK  220 (229)
T ss_dssp             -------------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHH
T ss_pred             -------------------ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHH
Confidence                               1345556677788888888888888888885 48888888888888888876   357888


Q ss_pred             HHHhhcCCC
Q psy138          261 TLITLCGAD  269 (321)
Q Consensus       261 ~Ll~~~~~~  269 (321)
                      +|++ .|+|
T Consensus       221 ~Ll~-~g~d  228 (229)
T d1ixva_         221 FFLN-NVVD  228 (229)
T ss_dssp             HHHH-HCCC
T ss_pred             HHHH-cCCC
Confidence            8888 5776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=239.27  Aligned_cols=255  Identities=25%  Similarity=0.282  Sum_probs=221.5

Q ss_pred             cceehhhccCCCcccccCcccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHH
Q psy138            2 VDVISIFLSKPNLVWENGSFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCA   81 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   81 (321)
                      +|++++|++++        .+.+...+..|.||||+|+..|+.++++.|++.+.. ....+..+.+|.+.|+..+..+..
T Consensus        18 ~e~vk~Ll~~G--------~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   88 (285)
T d1wdya_          18 VDLVQQLLEGG--------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLL   88 (285)
T ss_dssp             HHHHHHHHHTT--------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHCC--------CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhhHHHhhcCCcccc
Confidence            46788888884        334445556799999999999999999999988876 666677899999999999999999


Q ss_pred             HHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc----------CCCCCCcHHHHHHhcCCHHHHHHH
Q psy138           82 ETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNS----------QDNEGHSVVHWATVCGEVEALETV  151 (321)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~----------~~~~~~t~l~~a~~~~~~~i~~~L  151 (321)
                      .+.++.... ....+..+.++++.|+..++...++.+++...+++.          ....|.|||++|+..|+.+++++|
T Consensus        89 ~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  167 (285)
T d1wdya_          89 KLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  167 (285)
T ss_dssp             HHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH
T ss_pred             chhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHH
Confidence            999998766 456678899999999999999999999988666543          235689999999999999999999


Q ss_pred             HHc-CCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHH
Q psy138          152 LSA-GAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALV  230 (321)
Q Consensus       152 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  230 (321)
                      +++ |++++..+..+.++..........        ....+++++|+++|++++.++..|.||||.|+..|+.+++++|+
T Consensus       168 l~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         168 LDEMGADVNACDNMGRNALIHALLSSDD--------SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHTSCCCTTCCCTTSCCHHHHHHHCSCT--------TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HhccCCCcccccCCCCcccccccccccc--------hHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            975 789999999999888766544322        34467999999999999999999999999999999999999999


Q ss_pred             H-cCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCC
Q psy138          231 K-AGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDT  275 (321)
Q Consensus       231 ~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  275 (321)
                      + .|++++.+|.+|.||||+|+++|+.+++++|++ +|+|+|.+|.
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            7 589999999999999999999999999999999 6999999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.6e-37  Score=247.30  Aligned_cols=238  Identities=21%  Similarity=0.281  Sum_probs=195.1

Q ss_pred             ccHHHHHHH-cCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHH--------HHcCCCCccCCCCCCcHH
Q psy138           66 KTVLHYCAE-NTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTL--------LAHRANVNSQDNEGHSVV  136 (321)
Q Consensus        66 ~t~L~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L--------l~~~~~~~~~~~~~~t~l  136 (321)
                      .||||+|++ .|+.++++.|.+.+...  ....+|+||||+|+..|+.+++++|        ++.|++++.++..|.|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~--~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT--CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc--CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            478997765 46666666666655442  2224699999999999999988776        467999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcC---CCCcccCCCCCch
Q psy138          137 HWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHN---VDVNVVDKDGRQP  213 (321)
Q Consensus       137 ~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~t~  213 (321)
                      |+|+..|+.+++++|+++|++++..+..|.||++.+...            ...++.+++...+   ..++..+....++
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  146 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN------------RDFGMMVYMLNSTKLKGDIEELDRNGMTA  146 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT------------TCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhh------------cchhhhhhhhhcccccccccccccccchh
Confidence            999999999999999999999999999999999998873            2355666665543   3455667778899


Q ss_pred             hHHHHhcCCHH---HHHHHHHcCC--------CcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHH
Q psy138          214 ILWAASAGSSD---AILALVKAGA--------NVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALF  282 (321)
Q Consensus       214 l~~a~~~~~~~---~~~~Ll~~~~--------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  282 (321)
                      .+.+...+..+   .+..+.+...        ..+..+..|.||||+++..++.+++++++...+.+.+.+|..|.||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence            99888877554   3344444322        233456789999999999999999999887789999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          283 YAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       283 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      +|++.|+.+++++|+++||+++.+|..|+||||++
T Consensus       227 ~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999999999984

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=229.26  Aligned_cols=198  Identities=21%  Similarity=0.257  Sum_probs=165.8

Q ss_pred             CCccHHHHHHHcCcHHHH----HHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH
Q psy138           64 TRKTVLHYCAENTILSCA----ETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA  139 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  139 (321)
                      +|.||||+|+..|+.+++    +++...+.. ++..+.+|+||||+|+..|+.+++++|+++|++++..+..|.||++.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            478888888888886444    444455555 677888999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHh
Q psy138          140 TVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAAS  219 (321)
Q Consensus       140 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  219 (321)
                      +..++.++++.|++.+.......                                       ........+.||+|.|+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~---------------------------------------~~~~~~~~~~t~l~~a~~  120 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHS---------------------------------------ILKATNYNGHTCLHLASI  120 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSC---------------------------------------GGGCCCTTCCCHHHHHHH
T ss_pred             cccccccccchhhhhcccccccc---------------------------------------cccccccccchhhhHHhh
Confidence            99999999999988765543211                                       112234557899999999


Q ss_pred             cCCHHHHHHHHHcCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy138          220 AGSSDAILALVKAGANVEAHD-KDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQ  298 (321)
Q Consensus       220 ~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  298 (321)
                      .++.+++++|++.|+.++..+ .+|.||||+|++.|+.+++++|++ +|+|++.+|..|.||||+|+..++.+++++|++
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             cCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999998775 679999999999999999999999 799999999999999999999999999999999


Q ss_pred             cCCC
Q psy138          299 YGAT  302 (321)
Q Consensus       299 ~ga~  302 (321)
                      .+.+
T Consensus       200 ~~~~  203 (221)
T d1iknd_         200 LTLE  203 (221)
T ss_dssp             TSCG
T ss_pred             cCCc
Confidence            8755

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=221.74  Aligned_cols=217  Identities=25%  Similarity=0.331  Sum_probs=130.2

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHH----hCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHH
Q psy138           64 TRKTVLHYCAENTILSCAETILE----VAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWA  139 (321)
Q Consensus        64 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  139 (321)
                      +|.||||+||..|+.++++.|++    .+.+ ++..|..|.||||+|+..|+.+++++|+++|++.+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            46777777777777777666654    3434 566667777777777777777777777777777777777777777777


Q ss_pred             HhcCCHHHHHHHHHcCCCC----CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCc-ccCCCCCchh
Q psy138          140 TVCGEVEALETVLSAGAEP----STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVN-VVDKDGRQPI  214 (321)
Q Consensus       140 ~~~~~~~i~~~L~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l  214 (321)
                      ...++.++++.+.......    +.......++++.+..            .......+.+.....+.. .....+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  148 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN------------TECQETVQLLLERGADIDAVDIKSGRSPL  148 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH------------HTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccc------------cccchhhhhhhccccccccccccchhhHH
Confidence            7777777776666543221    1222233334443332            111233334444333322 2234455666


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q psy138          215 LWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATT  294 (321)
Q Consensus       215 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  294 (321)
                      +.|+..+...+++.++++|.+++.++..|.||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+++|+.+++|
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            66666666666666666666666666666666666666666666666666 46666666666666666666666655553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=8.4e-34  Score=217.92  Aligned_cols=206  Identities=26%  Similarity=0.331  Sum_probs=175.3

Q ss_pred             HHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q psy138           78 LSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAE  157 (321)
Q Consensus        78 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~  157 (321)
                      .|+|++|+++|+++....|.+|.||||+|+..|+.+++++|++.|++++..+..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            47899999998884334688899999999999999999999999999998888899999999988888777666655443


Q ss_pred             C-CCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCc
Q psy138          158 P-STPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANV  236 (321)
Q Consensus       158 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  236 (321)
                      . ......+.++.+.+...            ......+.|...+.+++..+..|.||++.++.++..++++.+++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  149 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARL------------AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR  149 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHT------------TCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccccc------------cchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc
Confidence            3 23344455555554432            2245777888899999999999999999999999999999999999999


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy138          237 EAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL  296 (321)
Q Consensus       237 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  296 (321)
                      +..|..|.||||+|+..|+.+++++|++ .|+|++.+|..|.||||+|++.|+.+++++|
T Consensus       150 ~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         150 DAQDDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999 7999999999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-33  Score=215.05  Aligned_cols=209  Identities=26%  Similarity=0.370  Sum_probs=184.1

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHH----cCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhH
Q psy138           97 EDGYTPLHLAAIAGNVPLIHTLLA----HRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYA  172 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~  172 (321)
                      ++|.||||+|+..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|+++|++.+.....+.++++.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998875    7999999999999999999999999999999999999999999999999988


Q ss_pred             hhhcccccccccchhhhHHHHHHHHHcCC----CCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCccc-ccCCCCcHH
Q psy138          173 SQMCGHASEMGNDVRVGLAVLKVLLHHNV----DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEA-HDKDGLTAL  247 (321)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l  247 (321)
                      ...            ...+.++.......    ..+.......++++.+.........+.|.....+... ....+.+|+
T Consensus        81 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  148 (228)
T d1k1aa_          81 CEH------------RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  148 (228)
T ss_dssp             HHT------------TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             ccc------------ccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHH
Confidence            763            23455555554432    2334456678999999999999999999988776554 457899999


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          248 HCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       248 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      +.|+..+..++++++++ .|.+.+.+|..|.||||+|+..|+.+++++|+++|||++.+|.+|.||||++.
T Consensus       149 ~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             HHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999 79999999999999999999999999999999999999999999999999863

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.5e-31  Score=205.27  Aligned_cols=205  Identities=26%  Similarity=0.372  Sum_probs=185.1

Q ss_pred             HHHHHHHHHcCCCcccc-cccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q psy138           44 DAEVKAILASRPNAVRE-RDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHR  122 (321)
Q Consensus        44 ~~~~~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~  122 (321)
                      .|+|++||+.|++ ++. .|.+|.||||+||+.|+.+++++|++.++. ++..+..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            5899999999987 765 589999999999999999999999999988 6788899999999999999988877776653


Q ss_pred             C-CCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCC
Q psy138          123 A-NVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNV  201 (321)
Q Consensus       123 ~-~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (321)
                      . ........+.++.+.+.........+.|.+.+.+++..+..|.||++.++..            ....+++.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~------------~~~~~~~~l~~~~~  147 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV------------NNTEAVNILLMHHA  147 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHT------------TCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhccc------------Ccceeeeeeccccc
Confidence            3 3334456788899999999999999999999999999999999999999874            34789999999999


Q ss_pred             CCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q psy138          202 DVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETL  262 (321)
Q Consensus       202 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  262 (321)
                      +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+++|+.+++++|
T Consensus       148 ~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=215.44  Aligned_cols=191  Identities=23%  Similarity=0.298  Sum_probs=157.4

Q ss_pred             cChhHHHHHHHcCCHHHHHHHHHc---CCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHH
Q psy138           30 EGATSLMYAAQQGKDAEVKAILAS---RPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLA  106 (321)
Q Consensus        30 ~g~~~L~~A~~~g~~~~~~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A  106 (321)
                      +|.||||+|+..|+.++++.+++.   .+..++.+|.+|.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc-ccccccccccccccc
Confidence            599999999999997666655432   3445889999999999999999999999999999988 688899999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCc------cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc
Q psy138          107 AIAGNVPLIHTLLAHRANVN------SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       107 ~~~~~~~~v~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      +..++.++++.|++.+....      .....|.||++.|+..++.+++++|++.|...+..                   
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-------------------  140 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-------------------  140 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-------------------
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc-------------------
Confidence            99999999999999865533      23445788888888888888888777766554322                   


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                               .+.+|.||||.|++.|+.+++++|+++|+|++.+|..|+||||+|+..++.++++
T Consensus       141 -------------------------~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         141 -------------------------EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             -------------------------CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             -------------------------cccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence                                     2345788888888888888888888888888888888888888888888888888


Q ss_pred             HHHhh
Q psy138          261 TLITL  265 (321)
Q Consensus       261 ~Ll~~  265 (321)
                      +|++.
T Consensus       196 ~l~~~  200 (221)
T d1iknd_         196 QLGQL  200 (221)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            88883

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=1.6e-32  Score=225.78  Aligned_cols=243  Identities=16%  Similarity=0.114  Sum_probs=155.7

Q ss_pred             cccccChhHHHHHHHcCCHHHHHHH--HHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCcccccc--CCCCCc
Q psy138           26 HNTMEGATSLMYAAQQGKDAEVKAI--LASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAA--DEDGYT  101 (321)
Q Consensus        26 ~~~~~g~~~L~~A~~~g~~~~~~~l--l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~t  101 (321)
                      ..+..|.|||++||+.|+.++++.+  |...+..++.+|..|.||||+||+.|+.++|++|++++++. +..  +..|.|
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t  163 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYH  163 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCC
Confidence            3456799999999999999887764  44445558899999999999999999999999999999873 433  346899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCc---cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccc
Q psy138          102 PLHLAAIAGNVPLIHTLLAHRANVN---SQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGH  178 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (321)
                      |||+|+..|+.++|++|++.|++..   ..+..+.||++.|+..|+.+++++|++.|++++..+....++.+....    
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~----  239 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN----  239 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHH----
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhh----
Confidence            9999999999999999999987653   233456788888999999999999999877654322221111111100    


Q ss_pred             ccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHH
Q psy138          179 ASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHREC  258 (321)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  258 (321)
                              ...........+.           .++++.+...+..+++..-      .......+.++++.|+..+..++
T Consensus       240 --------~~~~~~~~~~~~~-----------~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~a~~~~~ld~  294 (346)
T d2ajaa1         240 --------PFIARHVNRLKEM-----------HDAFKLSNPDGVFDLVTKS------ECLQGFYMLRNLIRRNDEVLLDD  294 (346)
T ss_dssp             --------HHHHHHHHHHHHH-----------HTTTTTTSSSSCCCCSSHH------HHHHHHHHHHHHHHHCCGGGHHH
T ss_pred             --------HHHHHhhccchHH-----------HHHHHHhcccccHhHHhcc------cccccchhhhHHHHHhcCChHHH
Confidence                    0000001111000           0111111111111110000      00001123367777888888888


Q ss_pred             HHHHHhhcCCC-----cccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          259 LETLITLCGAD-----VDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       259 ~~~Ll~~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      +++|++ .+..     .+..+.+|+||||+|++.|+.+++++|++.
T Consensus       295 v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         295 IRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            888887 3433     334445788888888888888888888864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=184.63  Aligned_cols=154  Identities=29%  Similarity=0.377  Sum_probs=125.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc
Q psy138          101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       101 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      +|||+|+..|+.++|++|+++|++++..+..|.||||+|+ .++.+++++|++.|+                        
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a------------------------   57 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA------------------------   57 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccc------------------------
Confidence            5777777777777777777777777777777777777654 566666666665544                        


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                           +++..+..+.++++.++..+..+.++.+++.+.+++..+..|.+|+|+|+..++.++++
T Consensus        58 ---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  116 (156)
T d1ihba_          58 ---------------------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE  116 (156)
T ss_dssp             ---------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ---------------------ccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                 44555666778888888899999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYG  300 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  300 (321)
                      +|++..+.+.+.+|..|.||||+|++.++.+++++|+++|
T Consensus       117 ~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         117 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999655689999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-29  Score=183.30  Aligned_cols=151  Identities=28%  Similarity=0.336  Sum_probs=127.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      ++||+||..|+.+++++|++++.+ ++..|..|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            799999999999999999999988 6889999999999886 78999999999999999999999999999999999998


Q ss_pred             HHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHH
Q psy138          147 ALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAI  226 (321)
Q Consensus       147 i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  226 (321)
                      +++.+++.+.+++.                                             .+..+.+|++.|+..++.+++
T Consensus        81 ~~~~l~~~~~~~~~---------------------------------------------~~~~~~~~l~~a~~~~~~~~~  115 (156)
T d1ihba_          81 TLQTLLEFQADVNI---------------------------------------------EDNEGNLPLHLAAKEGHLRVV  115 (156)
T ss_dssp             HHHHHHHTTCCTTC---------------------------------------------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccc---------------------------------------------ccccccccccccccccccccc
Confidence            88888876655443                                             445566677777777777777


Q ss_pred             HHHHHcCC-CcccccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy138          227 LALVKAGA-NVEAHDKDGLTALHCAASRGHRECLETLIT  264 (321)
Q Consensus       227 ~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  264 (321)
                      ++|+++++ +++.+|..|.||||+|+..++.+++++|++
T Consensus       116 ~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_         116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777765 667777777788888888888888887777

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=3.3e-32  Score=224.00  Aligned_cols=216  Identities=12%  Similarity=0.082  Sum_probs=151.1

Q ss_pred             ccccccCCccHHHHHHHcCcHHHHHH---HHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCC--CCC
Q psy138           58 VRERDRTRKTVLHYCAENTILSCAET---ILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQD--NEG  132 (321)
Q Consensus        58 ~~~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~  132 (321)
                      +..++..|.|||++|++.|+.+++++   |++.++. ++..+..|.||||+|+..|+.++|++|+++|++++..+  ..|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            34567788999999999999887766   6777766 67788889999999999999999999999999887765  358


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCc
Q psy138          133 HSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQ  212 (321)
Q Consensus       133 ~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t  212 (321)
                      .||||+|+..|+.+++++|++.|+....                                          .+..+..+.|
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~------------------------------------------~~~~~~~~~t  199 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEAT------------------------------------------AMIQAENYYA  199 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHH------------------------------------------HHHHHHHHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccc------------------------------------------cccccCCCcc
Confidence            8999999999999999999987654311                                          0011122456


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCcccccCC-------CCcHHHHHHHcCCHHHHHHHHhhcCCC--cccCCC-------C
Q psy138          213 PILWAASAGSSDAILALVKAGANVEAHDKD-------GLTALHCAASRGHRECLETLITLCGAD--VDVIDT-------N  276 (321)
Q Consensus       213 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~-------~  276 (321)
                      |++.|+.+|+.+++++|+++|++++..+..       +.++++.+...+..+....+.. ...+  .+..+.       .
T Consensus       200 ~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~~~~~  278 (346)
T d2ajaa1         200 FRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKL-SNPDGVFDLVTKSECLQGFY  278 (346)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTT-TSSSSCCCCSSHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHH-hcccccHhHHhcccccccch
Confidence            778888889999999999888776643322       2244555444444443333332 1111  122221       2


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCccceee
Q psy138          277 GCSALFYAVTLGHADATTLLLQYGAT-----PNRQDRKGRTYEYQW  317 (321)
Q Consensus       277 g~t~l~~A~~~~~~~~~~~Ll~~ga~-----~~~~~~~g~t~l~~~  317 (321)
                      +.++++.|...+..+++++|++.|+.     ....+.+|.||||++
T Consensus       279 ~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence            35788889999999999999998764     445556899999974

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=178.33  Aligned_cols=150  Identities=26%  Similarity=0.347  Sum_probs=117.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc
Q psy138          102 PLHLAAIAGNVPLIHTLLAH-RANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       102 ~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      .|+.|+..|+.++|+.|++. +++++..+..|.||||+|+. ++.+++++|++                           
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~---------------------------   56 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK---------------------------   56 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHH---------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccc---------------------------
Confidence            46666666666666666654 55666666666666666543 45555555555                           


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                        .+.+++..+..+.+|++.++..++.+++++++++|++++.++..|.||||+|+..|+.++++
T Consensus        57 ------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~  118 (156)
T d1bd8a_          57 ------------------QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS  118 (156)
T ss_dssp             ------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ------------------ccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccc
Confidence                              44455555666778888899999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQY  299 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  299 (321)
                      +|+.  |++++.+|..|.||||+|++.|+.+++++|++|
T Consensus       119 ~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         119 FLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8874  889999999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.8e-28  Score=175.61  Aligned_cols=149  Identities=34%  Similarity=0.408  Sum_probs=95.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhccccc
Q psy138          101 TPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHAS  180 (321)
Q Consensus       101 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (321)
                      |||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++........                    
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~--------------------   62 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--------------------   62 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccc--------------------
Confidence            66667777777777777776666655 456666777777666666666665554333222                    


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHH
Q psy138          181 EMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLE  260 (321)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  260 (321)
                                               ....+.++++.++...+.+.++++.+++++.+.++.+|.||||+|+..|+.++++
T Consensus        63 -------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~  117 (153)
T d1awcb_          63 -------------------------RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             -------------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             -------------------------cccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheee
Confidence                                     2223345556666666666666666666666666666677777777777777777


Q ss_pred             HHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy138          261 TLITLCGADVDVIDTNGCSALFYAVTLGHADATTLL  296 (321)
Q Consensus       261 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  296 (321)
                      +|++ .|++++.+|..|.||||+|+.+|+.+++++|
T Consensus       118 ~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         118 LLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666 4677776677777777777777777766654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-28  Score=176.40  Aligned_cols=154  Identities=25%  Similarity=0.291  Sum_probs=141.2

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhC
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAG  110 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  110 (321)
                      +.+.|+.||..|+.+.|++||+.++.+++.+|..|.||||+|+. ++.+++++|++++.+ ++..+..|.+|+++++..+
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc-ccccccccccccccccccc
Confidence            34569999999999999999999888899999999999999875 889999999999888 6778889999999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHhhhcccccccccchhhhH
Q psy138          111 NVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYASQMCGHASEMGNDVRVGL  190 (321)
Q Consensus       111 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (321)
                      +.+++++++++|++++.++..|.||||+|+..|+.+++++|+ .|++++..+..|.||+++|+.            ..+.
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~------------~g~~  146 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ------------RGAQ  146 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHH------------SCCH
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHH------------cCCH
Confidence            999999999999999999999999999999999999999887 689999999999999999987            3447


Q ss_pred             HHHHHHHHc
Q psy138          191 AVLKVLLHH  199 (321)
Q Consensus       191 ~~~~~l~~~  199 (321)
                      +++++|+++
T Consensus       147 ~iv~~Ll~h  155 (156)
T d1bd8a_         147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            899988865

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=6e-29  Score=171.63  Aligned_cols=107  Identities=31%  Similarity=0.406  Sum_probs=104.1

Q ss_pred             CchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCH
Q psy138          211 RQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHA  290 (321)
Q Consensus       211 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  290 (321)
                      .|||++|+++|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCch
Confidence            379999999999999999999999999999999999999999999999999999 7999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCccceeec
Q psy138          291 DATTLLLQYGATPNRQDRKGRTYEYQWR  318 (321)
Q Consensus       291 ~~~~~Ll~~ga~~~~~~~~g~t~l~~~~  318 (321)
                      +++++|+++|++++.+|.+|.||||++.
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.5e-27  Score=172.23  Aligned_cols=110  Identities=34%  Similarity=0.413  Sum_probs=103.7

Q ss_pred             CCCCCchhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHH
Q psy138          207 DKDGRQPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVT  286 (321)
Q Consensus       207 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  286 (321)
                      +..|.||||+|+..++.++++.++.........+..+.++++.++...+.++++++++ .+++.+.++..|.||||+|+.
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccc-cCCccccccccCchHHHhhhh
Confidence            5567889999999999999999999888888888889999999999999999999999 799999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          287 LGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       287 ~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      .|+.+++++|+++|++++.+|+.|.||||++
T Consensus       110 ~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_         110 HNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cchhheeeeccccccCCcccCCCCCCHHHHH
Confidence            9999999999999999999999999999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-28  Score=198.56  Aligned_cols=184  Identities=22%  Similarity=0.181  Sum_probs=115.4

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCH-------HHHHHHHHcCCCCCCCCCCCCc
Q psy138           95 ADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEV-------EALETVLSAGAEPSTPDIHGGY  167 (321)
Q Consensus        95 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-------~i~~~L~~~~~~~~~~~~~~~~  167 (321)
                      .|.+|.||||+|+..|+.++|++|+++|++++.++..|+||||.|+..++.       ++++++.+   .....+..|++
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            478899999999999999999999999999999999999999999986642       33333322   22333445555


Q ss_pred             hhhhHhhhcccccccccchhhhHHHHHHHHHcCCCCcccCCCCCchhHHHHhcCCHHHHHHHHHcCCCcc-cccCCCCcH
Q psy138          168 PIHYASQMCGHASEMGNDVRVGLAVLKVLLHHNVDVNVVDKDGRQPILWAASAGSSDAILALVKAGANVE-AHDKDGLTA  246 (321)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~  246 (321)
                      |+|.++.....        .......+++                         ...++.++.+.+.... .....+.++
T Consensus       180 ~lh~~~~~~~~--------~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~  226 (301)
T d1sw6a_         180 ILHHIIITSGM--------TGCSAAAKYY-------------------------LDILMGWIVKKQNRPIQSGTNEKESK  226 (301)
T ss_dssp             HHHHHHHHHTS--------TTCHHHHHHH-------------------------HHHHHHHHHHGGGCCEEEC-------
T ss_pred             HHHHHHHHhCc--------cccHHHHHHH-------------------------HHHHHHHHHhcCCcchhcccccccch
Confidence            55554432211        0001111111                         1123445555443332 233444455


Q ss_pred             HHHHHHcCCHHHH-----HHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCccceee
Q psy138          247 LHCAASRGHRECL-----ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATPNRQDRKGRTYEYQW  317 (321)
Q Consensus       247 l~~a~~~~~~~~~-----~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t~l~~~  317 (321)
                      ++.+.........     ..++.   ..+|.+|..|+||||+|++.|+.+++++|+++||+++++|+.|.|||+|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~---~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         227 PNDKNGERKDSILENLDLKWIIA---NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             ---------CHHHHHCSHHHHHH---HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             hHHHHhcchHHHHHHHhhHHHHh---cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            5544433333322     22232   23788999999999999999999999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-26  Score=160.32  Aligned_cols=121  Identities=22%  Similarity=0.217  Sum_probs=110.6

Q ss_pred             cChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCC-cHHHHHHH
Q psy138           30 EGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGY-TPLHLAAI  108 (321)
Q Consensus        30 ~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-t~l~~A~~  108 (321)
                      .+.++||.|++.|+.+++++|++.+.+ ++.++..|.||+|.|+ .|+.+++++|++++.+ ++..+..+. ||||+|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccc-cccccccccccccccccc
Confidence            367999999999999999999998755 8899999999999775 6999999999999988 566666665 69999999


Q ss_pred             hCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHH
Q psy138          109 AGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLS  153 (321)
Q Consensus       109 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~  153 (321)
                      .|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999975

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=155.70  Aligned_cols=76  Identities=33%  Similarity=0.373  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHcCCCcccccCCCC-cHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy138          221 GSSDAILALVKAGANVEAHDKDGL-TALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLL  297 (321)
Q Consensus       221 ~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  297 (321)
                      |+.+++++|+++|++++..+..+. ||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|+
T Consensus        46 g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          46 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            344444444444444444443332 34555555555555555555 35555555555555555555555555555444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=155.33  Aligned_cols=121  Identities=20%  Similarity=0.217  Sum_probs=110.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCC
Q psy138           32 ATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGN  111 (321)
Q Consensus        32 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~  111 (321)
                      .++|+.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.+ .+..|.+|+||||+|+..|+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccc-cccccccCcccccccchhhH
Confidence            4789999999999999999998765 899999999999999999999999999999987 68889999999999999999


Q ss_pred             HHHHHHHHHcCCCCccCCC-CCCcHHHHH--HhcCCHHHHHHHHHc
Q psy138          112 VPLIHTLLAHRANVNSQDN-EGHSVVHWA--TVCGEVEALETVLSA  154 (321)
Q Consensus       112 ~~~v~~Ll~~~~~~~~~~~-~~~t~l~~a--~~~~~~~i~~~L~~~  154 (321)
                      .+++++|+++|++++..+. .+.||+..+  ...|+.+++++|++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999997764 578887665  567889999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=156.04  Aligned_cols=105  Identities=22%  Similarity=0.323  Sum_probs=93.5

Q ss_pred             chhHHHHhcCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhhcCCCcccCCCCCCcHHHHHHHcCCHH
Q psy138          212 QPILWAASAGSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECLETLITLCGADVDVIDTNGCSALFYAVTLGHAD  291 (321)
Q Consensus       212 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  291 (321)
                      ++|+.|+..|+.+++++|+++|++++.+|.+|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+.+|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccc-cccccccccccCcccccccchhhHHH
Confidence            57888999999999999999999999999999999999999999999999998 69999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCC-CCCccceee
Q psy138          292 ATTLLLQYGATPNRQDR-KGRTYEYQW  317 (321)
Q Consensus       292 ~~~~Ll~~ga~~~~~~~-~g~t~l~~~  317 (321)
                      ++++|+++||+++.++. .|+||+++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~  108 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKC  108 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            99999999999987774 588887654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.1e-25  Score=152.78  Aligned_cols=105  Identities=23%  Similarity=0.311  Sum_probs=66.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHH
Q psy138           67 TVLHYCAENTILSCAETILEVAPDLIEAADEDGYTPLHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVE  146 (321)
Q Consensus        67 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (321)
                      |||++|++.|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            566666666666666666666555 4555566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCCCCCCCCCCCchhhhH
Q psy138          147 ALETVLSAGAEPSTPDIHGGYPIHYA  172 (321)
Q Consensus       147 i~~~L~~~~~~~~~~~~~~~~~l~~~  172 (321)
                      ++++|+++|++++..+..|.||+++|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            66666666666666666666666655

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.3e-24  Score=173.78  Aligned_cols=153  Identities=18%  Similarity=0.259  Sum_probs=119.1

Q ss_pred             cccccccccccChhHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccHHHHHHHcCcH---HHHHHHHHhCCccccccC
Q psy138           20 SFDKKVHNTMEGATSLMYAAQQGKDAEVKAILASRPNAVRERDRTRKTVLHYCAENTIL---SCAETILEVAPDLIEAAD   96 (321)
Q Consensus        20 ~~~~~~~~~~~g~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~   96 (321)
                      .++.+...+.+|.||||+||..|+.++++.||+.+.+ ++.+|..|.||||.|+..++.   +.+..+++.........+
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            3344444467799999999999999999999998865 889999999999999987752   122223332222356678


Q ss_pred             CCCCcHHHHHHHhCC----HH--------HHHHHHHcCCC-------------------------------------Ccc
Q psy138           97 EDGYTPLHLAAIAGN----VP--------LIHTLLAHRAN-------------------------------------VNS  127 (321)
Q Consensus        97 ~~~~t~l~~A~~~~~----~~--------~v~~Ll~~~~~-------------------------------------~~~  127 (321)
                      ..|+||||+++..+.    ..        ++.+++..+..                                     +|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            899999999886543    22        23344443322                                     567


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCchhhhHh
Q psy138          128 QDNEGHSVVHWATVCGEVEALETVLSAGAEPSTPDIHGGYPIHYAS  173 (321)
Q Consensus       128 ~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~~~~~~~~~~~l~~~~  173 (321)
                      +|..|+||||+|++.|+.+++++|+++|++++.++..|.||+++|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            8899999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.7e-23  Score=149.20  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=112.3

Q ss_pred             ChhHHHHHHHcCCHHHHHHHHHcCCCc-----ccccccCCccHHHHHHHc---CcHHHHHHHHHhCCccccccCCCCCcH
Q psy138           31 GATSLMYAAQQGKDAEVKAILASRPNA-----VRERDRTRKTVLHYCAEN---TILSCAETILEVAPDLIEAADEDGYTP  102 (321)
Q Consensus        31 g~~~L~~A~~~g~~~~~~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t~  102 (321)
                      ....|+.|++.++...+..++..+.+.     ....+..|.||||+|++.   ++.+++++|++++.+ ++..+..|.||
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~Tp   84 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccc
Confidence            345577899999999999999887542     223467899999999974   688999999999988 68899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q psy138          103 LHLAAIAGNVPLIHTLLAHRANVNSQDNEGHSVVHWATVCGEVEALETVLSAGAEP  158 (321)
Q Consensus       103 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i~~~L~~~~~~~  158 (321)
                      ||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++.+...
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999976543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-23  Score=149.54  Aligned_cols=114  Identities=23%  Similarity=0.274  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHcCCCCccc------CCCCCchhHHHHhc---CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHcCCHHHH
Q psy138          189 GLAVLKVLLHHNVDVNVV------DKDGRQPILWAASA---GSSDAILALVKAGANVEAHDKDGLTALHCAASRGHRECL  259 (321)
Q Consensus       189 ~~~~~~~l~~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  259 (321)
                      .+..+..++..|.+++..      +..|.||||+|++.   +..+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        18 dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v   97 (154)
T d1dcqa1          18 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL   97 (154)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccccccccc
Confidence            356677777888776644      56789999999974   678999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy138          260 ETLITLCGADVDVIDTNGCSALFYAVTLGHADATTLLLQYGATP  303 (321)
Q Consensus       260 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ga~~  303 (321)
                      ++|++ +|++++.+|..|.||||+|++.|+.+++++|++.++..
T Consensus        98 ~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          98 KLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999 79999999999999999999999999999999988653