Psyllid ID: psy13911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Secondary Structure (PSIPRED)
cccHHHccccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHcccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEcccccHHcccHHHHHHccccEEEcccccccccccHcccccccEEEccccccccccHHHHHHcccccEEEccccccccccHHHHHHHHcccEEEEccccccccccHccccccEEEEccccccccccccHcccccccEEEccccccEEccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MALELFLQNSSKLKVLNISKNCLKmlpslnnenRYLEKLYLtsnaltdigplnkcrqlnTLHVAYNAITSLPDNCISAWSEMEELVLSgngisslpntipqswphlrVLRLhsnhltscptlylssslrVLDLSYNHlerlnlntlipkqlqyldvsgnprlhvdpnhfkSYRSYVRVYIQLV
Flexible Loop (DISEMBL)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSgnprlhvdpnhfksyrsYVRVYIQLV
Low Complexity Region (SEG)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Disordered region (IsUnstruct)
*****FL***SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ**
Disordered Region (DISOPRED)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Disordered Region (DISEMBL)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Disordered Region (DISPRO)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9VJ07	954	Protein phosphatase PHLPP	yes	N/A	0.972	0.186	0.420	4e-25
O60346	1717	PH domain leucine-rich re	yes	N/A	0.868	0.092	0.369	1e-17
Q9WTR8	1696	PH domain leucine-rich re	yes	N/A	0.868	0.093	0.357	3e-17
Q8CHE4	1687	PH domain leucine-rich re	yes	N/A	0.868	0.094	0.357	5e-17
Q8BXA7	1320	PH domain leucine-rich re	no	N/A	0.814	0.112	0.354	5e-12
A8JAM0	1159	Coiled-coil domain-contai	N/A	N/A	0.978	0.154	0.284	7e-09
P14605	1692	Adenylate cyclase OS=Schi	yes	N/A	0.879	0.095	0.323	2e-08
A6H6A4	596	Leucine-rich repeat and I	no	N/A	0.836	0.256	0.305	5e-08
Q6ZVD8	1323	PH domain leucine-rich re	no	N/A	0.568	0.078	0.333	1e-07
Q01513	2145	Adenylate cyclase OS=Podo	yes	N/A	0.683	0.058	0.309	1e-07

>sp|Q9VJ07|PHLPP_DROME Protein phosphatase PHLPP-like protein OS=Drosophila melanogaster GN=Phlpp PE=3 SV=1

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 5   LFLQNSSKLKVLNISKNCLKMLPSLNNENRY-LEKLYLTSNALTD--IGPLNKCRQLNTL 61
            F    ++L+ LN+S N L  LP     N   L  L L  N L D    PL+   +L  L
Sbjct: 224 FFAVTHARLETLNVSCNKLSTLPRYEQNNHAALVNLSLAGNHLNDSIFEPLHNAAKLRVL 283

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
           H+AYN I  LP  C+  W E+E LVLSGN +  LP  +  +   LRVLR  +N L   P 
Sbjct: 284 HLAYNRIGVLPAACVRNWPELEILVLSGNMLQQLPEEVA-TLGQLRVLRCCNNLLLCTPQ 342

Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
           L   + L+VLDLS+NHL+R+NL  L+P + L+YLD+SGN +L VD   FK  +S  + + 
Sbjct: 343 LAKLAMLKVLDLSHNHLDRVNLLALVPSRNLKYLDLSGNLQLQVDEQQFKVCQSQSQRHW 402

Query: 181 QLV 183
            LV
Sbjct: 403 SLV 405

Protein phosphatase that specifically mediates dephosphorylation of 'Ser-586' of Akt1, a protein that regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-586' of Akt1 triggers apoptosis and suppression of tumor growth.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|O60346|PHLP1_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 1 OS=Homo sapiens GN=PHLPP1 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 6    FLQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNT 60
             L  +  L+ LN S N L+ LP  +L+ E N  L++LYLT+N+LTD  +  L     L  
Sbjct: 981  LLMKADSLRFLNASANKLESLPPATLSEETNSILQELYLTNNSLTDKCVPLLTGHPHLKI 1040

Query: 61   LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
            LH+AYN + S P + ++   E+EE+ LSGN + ++P TI  +   +  +  HSN +   P
Sbjct: 1041 LHMAYNRLQSFPASKMAKLEELEEIDLSGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFP 1099

Query: 121  TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct: 1100 EVMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLVLD 1144

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor. May act as a negative regulator of K-Ras signaling in membrane rafts.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9WTR8|PHLP1_RAT PH domain leucine-rich repeat protein phosphatase 1 OS=Rattus norvegicus GN=Phlpp1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 6/165 (3%)

Query: 6    FLQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNT 60
             L  +  L+ LN S N L+ LP  +L+ E +  L++LYLT+N+LTD  +  L    +L  
Sbjct: 944  LLMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNNSLTDKCVPLLTGHPRLKI 1003

Query: 61   LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
            LH+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P
Sbjct: 1004 LHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFP 1062

Query: 121  TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct: 1063 EVMQLPEVKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 1107

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor (By similarity). May act as a negative regulator of K-Ras signaling in membrane rafts.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8CHE4|PHLP1_MOUSE PH domain leucine-rich repeat-containing protein phosphatase 1 OS=Mus musculus GN=Phlpp1 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 6    FLQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNT 60
             L  +  L+ LN S N L+ LP  +L+ E +  L++LYLT+N LTD  +  L    +L  
Sbjct: 937  LLMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNNCLTDKCVPLLTGHPRLKI 996

Query: 61   LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
            LH+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P
Sbjct: 997  LHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFP 1055

Query: 121  TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct: 1056 EVMQLPEVKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 1100

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB, and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. May act as a negative regulator of K-Ras signaling in membrane rafts.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8BXA7|PHLP2_MOUSE PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Mus musculus GN=Phlpp2 PE=2 SV=3

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 13  LKVLNISKNCLKMLPSLNNENR---YLEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNA 67
           L+ LN S N L+ LPS          L+ LYLTSN LTD  I  L     L  LH+A N 
Sbjct: 593 LRYLNASANSLESLPSACAGEESLSVLQLLYLTSNLLTDQCIPVLVGHPHLRVLHLANNQ 652

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS 127
           + + P + ++   ++EEL LSGN ++++P TI  +   L  L  H+N+++  P +     
Sbjct: 653 LQTFPASKLNKLEQLEELNLSGNKLTAIPTTI-ANCKRLHTLVAHANNISIFPEILQLPQ 711

Query: 128 LRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
           ++ +DLS N L  + +   +P  LQ LD++GN  L
Sbjct: 712 IQFVDLSCNDLTEILIPEALPATLQDLDLTGNTNL 746

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 32/211 (15%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI-GPLNKCR 56
           LE  L  + +   LN+    LK LP      +   N ++ +L L+SN LTD+   L + R
Sbjct: 16  LEERLMEARRTYRLNMGYAGLKQLPPGFVELVKKYNPHITELELSSNDLTDLPDELEEFR 75

Query: 57  QLNTLHVAYNAITSLP----------------------DNCISAWSEMEELVLSGNGISS 94
            L  L + YN +  +P                      D+ I   S ++EL +SGN I++
Sbjct: 76  YLRILRLKYNQLKRIPAVVYRLPQLMVFDASGNRIQKVDDAIGHLSLLKELDVSGNEITT 135

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQY 153
           LP ++  + P L VL++ +N L   P +L     +  +DLS N+L  L  +    K++Q 
Sbjct: 136 LPESL-STLPKLEVLQVENNRLELLPESLGELPGVIKMDLSTNNLRYLPASMGQLKKVQR 194

Query: 154 LDVSGNPRLHVDPN--HFKSYRSYVRVYIQL 182
           +DV  N    V P+  H K+ + +   Y  L
Sbjct: 195 IDVGNNLLTKVPPSMGHLKTLKEFNLRYNHL 225

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P14605|CYAA_SCHPO Adenylate cyclase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cyr1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 11  SKLKVL-NISKNCLKMLPSLNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNA 67
           S+LK++  +S N +  L S       +E+LYL  N L +     L   + L  L+++YN 
Sbjct: 782 SQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNY 841

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSS 126
           +T +P      +S+++ L +SGN +++L +    +   L  L  + N L+S P    LS 
Sbjct: 842 LTEIPSKFFQNFSDLKHLFVSGNELANL-SISSTAQVLLETLYANGNRLSSFPKNEALSK 900

Query: 127 SLRVLDLSYNHLERLNLNTLIPK------QLQYLDVSGNPRL----HVDPNHFKSY 172
           SLR LD+S N+L+ L +     K      QL+YL++SGN       H D N  KSY
Sbjct: 901 SLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKSY 956

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|A6H6A4|LRIQ4_MOUSE Leucine-rich repeat and IQ domain-containing protein 4 OS=Mus musculus GN=Lrriq4 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSL 71
           L+V+++ +N LK +P        L+K Y+ SN L  +   L++C +L+ L + +N+I SL
Sbjct: 226 LEVIDLDENKLKSIPGDIGHLVRLQKFYVASNHLMSLPESLSQCSKLSVLDLTHNSIHSL 285

Query: 72  PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLRV 130
           P + +   +E+ E+ LSGN +  +P  +  SW  L +L L +  L      +    +LR 
Sbjct: 286 PSS-LELLTELTEVGLSGNRLEKVPRLLC-SWVSLHLLYLRNTSLHGLRDSFKRLINLRF 343

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN 167
           LDLS NH+E   +     K L+ L +  N    + P+
Sbjct: 344 LDLSQNHIEHFPVQICALKNLEILALDDNKVRQLPPS 380

Mus musculus (taxid: 10090)

>sp|Q6ZVD8|PHLP2_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Homo sapiens GN=PHLPP2 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  LH+A N + + P + ++   ++EEL LSGN + ++P TI  +   L  L  HSN+++
Sbjct: 646 LRILHLANNQLQTFPASKLNKLEQLEELNLSGNKLKTIPTTI-ANCKRLHTLVAHSNNIS 704

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P +     ++ +DLS N L  + +   +P  LQ LD++GN  L
Sbjct: 705 IFPEILQLPQIQFVDLSCNDLTEILIPEALPATLQDLDLTGNTNL 749

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q01513|CYAA_PODAS Adenylate cyclase OS=Podospora anserina PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 17/142 (11%)

Query: 36   LEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
            L  LY+  N L D     L     L  L+++YN ++ +P   I +W ++ EL LSGN ++
Sbjct: 1236 LRYLYMADNQLDDDCFDQLCMLENLRVLNLSYNDLSDMPQRSIKSWPQLVELYLSGNELA 1295

Query: 94   SLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLE----------RLN 142
            SLP    + +  L+ L ++ N  T+ P  +  +  L V D   N L+            N
Sbjct: 1296 SLPADDLEEYSMLQTLHINGNKFTNLPADISRAKKLTVFDCGSNSLKYNIANVPYDWNWN 1355

Query: 143  LNTLIPKQLQYLDVSGNPRLHV 164
            LN      L+YL++SGN RL +
Sbjct: 1356 LN----PNLRYLNLSGNRRLEI 1373

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Podospora anserina (taxid: 5145)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
332030535	1100	Protein phosphatase PHLPP-like protein [	0.918	0.152	0.514	7e-42
383864524	1740	PREDICTED: PH domain leucine-rich repeat	0.918	0.096	0.525	9e-42
307181024	1097	Protein phosphatase PHLPP-like protein [	0.918	0.153	0.514	1e-41
307200228	1111	Protein phosphatase PHLPP-like protein [	0.918	0.151	0.514	3e-41
340729082	1784	PREDICTED: PH domain leucine-rich repeat	0.918	0.094	0.525	4e-41
350401465	1824	PREDICTED: PH domain leucine-rich repeat	0.918	0.092	0.514	6e-41
380013691	1109	PREDICTED: protein phosphatase PHLPP-lik	0.918	0.151	0.519	2e-40
328788656	1746	PREDICTED: PH domain leucine-rich repeat	0.918	0.096	0.514	4e-40
345483572	1444	PREDICTED: protein phosphatase PHLPP-lik	0.934	0.118	0.494	9e-34
170055945	1002	adenylate cyclase [Culex quinquefasciatu	0.928	0.169	0.479	2e-33

>gi|332030535|gb|EGI70223.1| Protein phosphatase PHLPP-like protein [Acromyrmex echinatior]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 9/177 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLP------SLNNENRYLEKLYLTSNALTD--IGPLNKCRQ 57
           F  N+ K+KVLN+S N L  LP       ++  +  LEKLY+T+N LTD  +  L K   
Sbjct: 362 FFTNTEKMKVLNLSNNRLSELPYREEAGKIHQGSHTLEKLYITANCLTDTALDALAKFTS 421

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  LH+AYN + +LP++CI+AWS++EELVLSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 422 LRILHIAYNTLDTLPESCIAAWSDLEELVLSGNRLQYLPDNV-ANLRHLRVLRVHSNRLL 480

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 481 TCPTFSRTASLKVLDLAHNQLDRVNLATLVPPQLQFLDISCNSRLHVDPRQFQDYRS 537

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864524|ref|XP_003707728.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 1-like [Megachile rotundata]

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 127/177 (71%), Gaps = 9/177 (5%)

Query: 6    FLQNSSKLKVLNISKNCLKMLPSLN--NENRY----LEKLYLTSNALTD--IGPLNKCRQ 57
            F  N+ K+KVLN+S N L  LP L   N+NR+    +EKLYLT+N LTD  +  L K   
Sbjct: 1003 FFVNTEKMKVLNLSNNRLSELPPLGEGNKNRHSNHSVEKLYLTANCLTDTALDTLAKLTS 1062

Query: 58   LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
            L  LH+AYN + +LP++CI++W ++EELVLSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 1063 LRALHIAYNTLDTLPESCIASWKDLEELVLSGNRLQYLPDNVA-NLRHLRVLRVHSNRLL 1121

Query: 118  SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
            +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 1122 TCPTFNKTTSLKVLDLAHNQLDRINLATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 1178

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181024|gb|EFN68798.1| Protein phosphatase PHLPP-like protein [Camponotus floridanus]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 122/177 (68%), Gaps = 9/177 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENR------YLEKLYLTSNALTD--IGPLNKCRQ 57
           F  N+ K+KVLN+S N L  LP      R       LEKLY+T+N LTD  +  L K   
Sbjct: 361 FFANTEKMKVLNLSNNRLSELPYREEAGRSHQGSHTLEKLYVTANCLTDTALDALAKFTS 420

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  LH+AYN + +LP++CI+AW ++EELVLSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 421 LRILHIAYNTLDTLPESCIAAWGDLEELVLSGNRLQYLPDNV-ANLQHLRVLRVHSNRLL 479

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 480 TCPTFGKTASLKVLDLAHNQLDRVNLATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 536

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200228|gb|EFN80522.1| Protein phosphatase PHLPP-like protein [Harpegnathos saltator]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 122/177 (68%), Gaps = 9/177 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRY------LEKLYLTSNALTD--IGPLNKCRQ 57
           F  N+ K+KVLN+S N L  LP      R       LEKLY+T+N LTD  +  L K   
Sbjct: 373 FFANTEKMKVLNLSNNRLSELPFREEAGRTHQGLHTLEKLYVTANCLTDTALDALAKFTS 432

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  LH+AYN + +LP++CI+AW ++EELVLSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 433 LRVLHIAYNTLDTLPESCIAAWGDLEELVLSGNRLQYLPDNV-ANLRHLRVLRVHSNRLL 491

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 492 TCPTFNKTASLKVLDLAHNQLDRVNLATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 548

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729082|ref|XP_003402837.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 2-like [Bombus terrestris]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 126/177 (71%), Gaps = 9/177 (5%)

Query: 6    FLQNSSKLKVLNISKNCLKMLPSLN--NENRY----LEKLYLTSNALTD--IGPLNKCRQ 57
            F  N+ K+KVLN+S N L  LP L   N+NR+    LEKLYLT+N LTD  +  L K   
Sbjct: 1047 FFINTEKMKVLNLSNNRLSELPHLGEGNKNRHTNHNLEKLYLTANCLTDTALDTLAKLTS 1106

Query: 58   LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
            L  LH+AYN + +LP++CI +W+++EELVLSGN +  LP+    +  HLRVLR+HSN L 
Sbjct: 1107 LRVLHIAYNTLDTLPESCIVSWADLEELVLSGNRLQYLPDNAA-NLRHLRVLRVHSNRLL 1165

Query: 118  SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
            +CPT   ++SL+VLDL++N L+R+N+ TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 1166 TCPTFNKTTSLKVLDLAHNQLDRVNMATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 1222

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401465|ref|XP_003486161.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 2-like [Bombus impatiens]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 123/177 (69%), Gaps = 9/177 (5%)

Query: 6    FLQNSSKLKVLNISKNCLKMLPSLNNENRY------LEKLYLTSNALTD--IGPLNKCRQ 57
            F  N+ K+KVLN+S N L  LP L   N+       LEKLYLT+N LTD  +  L K   
Sbjct: 1087 FFTNTEKMKVLNLSNNRLSELPHLGEGNKSRHTNHNLEKLYLTANCLTDTALDTLAKLTS 1146

Query: 58   LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
            L  LH+AYN + +LP++CI +W+++EELVLSGN +  LP+    +  HLRVLR+HSN L 
Sbjct: 1147 LRVLHIAYNTLDTLPESCIVSWTDLEELVLSGNRLQYLPDNAA-NLRHLRVLRVHSNRLL 1205

Query: 118  SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
            +CPT   ++SL+VLDL++N L+R+N+ TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 1206 TCPTFNKTTSLKVLDLAHNQLDRVNMATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 1262

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013691|ref|XP_003690883.1| PREDICTED: protein phosphatase PHLPP-like protein-like [Apis florea]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 125/177 (70%), Gaps = 9/177 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLN--NENRY----LEKLYLTSNALTD--IGPLNKCRQ 57
           F  N+ K+KVLN+S N L  LP     N+NR+    LEKLYLT+N LTD  +  L K   
Sbjct: 372 FFINTEKMKVLNLSNNRLSELPHFGEGNKNRHNNHSLEKLYLTANCLTDTALDALAKFTS 431

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  LH+AYN + +L ++CI++W ++EELVLSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 432 LRVLHIAYNTLDTLSESCIASWRDLEELVLSGNRLQYLPDNM-ANLRHLRVLRVHSNRLL 490

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 491 TCPTFNKTASLKVLDLAHNQLDRVNLATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 547

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788656|ref|XP_394402.4| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 1 [Apis mellifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 9/177 (5%)

Query: 6    FLQNSSKLKVLNISKNCLKMLPSLN--NENRY----LEKLYLTSNALTD--IGPLNKCRQ 57
            F  N+ K+KVLN+S N L  LP     N+NR+    LEKLYLT+N LTD  +  L K   
Sbjct: 1009 FFINTEKMKVLNLSNNRLSELPHFGEGNKNRHNNHSLEKLYLTANCLTDTALDALVKFTS 1068

Query: 58   LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
            L  LH+AYN + +L ++CI++W ++EEL+LSGN +  LP+ +  +  HLRVLR+HSN L 
Sbjct: 1069 LRVLHIAYNTLDTLSESCIASWKDLEELILSGNRLQYLPDNVA-NLRHLRVLRVHSNRLL 1127

Query: 118  SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
            +CPT   ++SL+VLDL++N L+R+NL TL+P QLQ+LD+S N RLHVDP  F+ YRS
Sbjct: 1128 TCPTFNKTASLKVLDLAHNQLDRVNLATLVPPQLQFLDISCNSRLHVDPRQFQVYRS 1184

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483572|ref|XP_001602236.2| PREDICTED: protein phosphatase PHLPP-like protein-like [Nasonia vitripennis]

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 123/184 (66%), Gaps = 13/184 (7%)

Query: 6   FLQNSSKLKVLNISKNCLKMLP----------SLNNENRYLEKLYLTSNALTD--IGPLN 53
           F  N+ K+KVLN+S N L  LP          S   E   LEKLYLT N+LT+  +  L 
Sbjct: 694 FFANTLKMKVLNLSNNRLSELPHNYAEEPRARSDRQEPAALEKLYLTGNSLTNTALDALA 753

Query: 54  KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
           K   L  LH+AYNA+ +LP++C++ W+E+EELVLSGN +  LP+ +  +  HLRVLR+HS
Sbjct: 754 KFAALRVLHLAYNALDTLPESCVAQWTELEELVLSGNKLQYLPDNV-ANLAHLRVLRVHS 812

Query: 114 NHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYR 173
           N L +CP    +SSL+VLDL++NHL+RLNL+ L+  QLQ+LD+S N RLH+DP   +SY 
Sbjct: 813 NRLLTCPGFNKTSSLKVLDLAHNHLDRLNLDNLLSAQLQFLDISCNSRLHLDPRQLQSYN 872

Query: 174 SYVR 177
           S  R
Sbjct: 873 SSRR 876

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055945|ref|XP_001863809.1| adenylate cyclase [Culex quinquefasciatus] gi|167875777|gb|EDS39160.1| adenylate cyclase [Culex quinquefasciatus]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 3/173 (1%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
           E F     +L +LNIS N L  LP +   N  LE+LY T+N LTD  +  L    +L  L
Sbjct: 253 ENFFIACERLTILNISSNKLMTLPIIFGTNCNLERLYATNNNLTDRVLDSLICLPRLKVL 312

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
           H+ YN +T+LP+ CI+ W E+EELVLSGN +  LP  +  +  +LRVLR+HSN L S P 
Sbjct: 313 HIGYNLLTTLPETCITCWGELEELVLSGNKLRHLPENL-TNLRYLRVLRVHSNQLQSVPP 371

Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           L  +SSLRVLDL++N L+++N+ +L+ KQLQ+LD+S N +L VDPN  ++ RS
Sbjct: 372 LARNSSLRVLDLAHNQLDKINMVSLVSKQLQFLDLSSNSQLQVDPNQLQACRS 424

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0032749	954	Phlpp "PH domain leucine-rich	0.967	0.185	0.423	1.3e-26
UNIPROTKB|G3N2B1	1176	PHLPP1 "Uncharacterized protei	0.863	0.134	0.371	6e-20
UNIPROTKB|F1P1I2	1175	PHLPP1 "Uncharacterized protei	0.863	0.134	0.371	7.6e-20
UNIPROTKB|F1NJB8	1181	PHLPP1 "Uncharacterized protei	0.863	0.133	0.371	7.7e-20
UNIPROTKB|O60346	1717	PHLPP1 "PH domain leucine-rich	0.863	0.092	0.371	1.6e-19
UNIPROTKB|F1SMW1	1192	PHLPP1 "Uncharacterized protei	0.863	0.132	0.365	2.1e-19
UNIPROTKB|F1PVE1	1388	PHLPP1 "Uncharacterized protei	0.863	0.113	0.365	2.5e-19
UNIPROTKB|D4A5N5	1685	Phlpp1 "PH domain leucine-rich	0.863	0.093	0.359	5.3e-19
RGD|621308	1696	Phlpp1 "PH domain and leucine	0.863	0.093	0.359	5.4e-19
UNIPROTKB|Q9WTR8	1696	Phlpp1 "PH domain leucine-rich	0.863	0.093	0.359	5.4e-19

FB|FBgn0032749 Phlpp "PH domain leucine-rich repeat protein phosphatase" [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 77/182 (42%), Positives = 103/182 (56%)

Query:     6 FLQNSSKLKVLNISKNCLKMLPSLNNENRY-LEKLYLTSNALTD--IGPLNKCRQLNTLH 62
             F    ++L+ LN+S N L  LP     N   L  L L  N L D    PL+   +L  LH
Sbjct:   225 FAVTHARLETLNVSCNKLSTLPRYEQNNHAALVNLSLAGNHLNDSIFEPLHNAAKLRVLH 284

Query:    63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
             +AYN I  LP  C+  W E+E LVLSGN +  LP  +  +   LRVLR  +N L   P L
Sbjct:   285 LAYNRIGVLPAACVRNWPELEILVLSGNMLQQLPEEVA-TLGQLRVLRCCNNLLLCTPQL 343

Query:   123 YLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
                + L+VLDLS+NHL+R+NL  L+P + L+YLD+SGN +L VD   FK  +S  + +  
Sbjct:   344 AKLAMLKVLDLSHNHLDRVNLLALVPSRNLKYLDLSGNLQLQVDEQQFKVCQSQSQRHWS 403

Query:   182 LV 183
             LV
Sbjct:   404 LV 405

GO:0006470 "protein dephosphorylation" evidence=IMP;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IMP;NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G3N2B1 PHLPP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 61/164 (37%), Positives = 94/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E N  L++LYLT+N LTD  +  L     L  L
Sbjct:   466 LMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVSLLTGHPHLKVL 525

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ LSGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   526 HMAYNRLQSFPASKMAKLEELEEIDLSGNKLKAVPTTI-MNCRRMHTVTAHSNCIEVFPE 584

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:   585 VMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALD 628

GO:0009649 "entrainment of circadian clock" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1P1I2 PHLPP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 61/164 (37%), Positives = 95/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNENR-YLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+MLP  +L+ E    L++LYLT+N LTD  +  L     L  L
Sbjct:   452 LLKADSLRFLNASANKLEMLPPATLSEETHSILQELYLTNNNLTDKCVPLLTGHPHLKIL 511

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   512 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 570

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +   S ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:   571 VMQLSEIKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 614

GO:0003824 "catalytic activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NJB8 PHLPP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 61/164 (37%), Positives = 95/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNENR-YLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+MLP  +L+ E    L++LYLT+N LTD  +  L     L  L
Sbjct:   458 LLKADSLRFLNASANKLEMLPPATLSEETHSILQELYLTNNNLTDKCVPLLTGHPHLKIL 517

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   518 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 576

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +   S ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:   577 VMQLSEIKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 620

GO:0003824 "catalytic activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009649 "entrainment of circadian clock" evidence=IEA

UNIPROTKB|O60346 PHLPP1 "PH domain leucine-rich repeat-containing protein phosphatase 1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 61/164 (37%), Positives = 95/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E N  L++LYLT+N+LTD  +  L     L  L
Sbjct:   982 LMKADSLRFLNASANKLESLPPATLSEETNSILQELYLTNNSLTDKCVPLLTGHPHLKIL 1041

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ LSGN + ++P TI  +   +  +  HSN +   P 
Sbjct:  1042 HMAYNRLQSFPASKMAKLEELEEIDLSGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 1100

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:  1101 VMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLVLD 1144

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009649 "entrainment of circadian clock" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

UNIPROTKB|F1SMW1 PHLPP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 60/164 (36%), Positives = 95/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E N  L++LYLT+N LTD  +  L    +L  L
Sbjct:   466 LMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVHLLTGHPRLKIL 525

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   526 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 584

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:   585 VMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALD 628

GO:0009649 "entrainment of circadian clock" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PVE1 PHLPP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 245 (91.3 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 60/164 (36%), Positives = 94/164 (57%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E N  L++LYLT+N LTD  +  L     L  L
Sbjct:   674 LMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVPLLTGHPHLKIL 733

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   734 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTMIAHSNCIEVFPE 792

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:   793 VMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALD 836

GO:0005543 "phospholipid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|D4A5N5 Phlpp1 "PH domain leucine-rich repeat protein phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 59/164 (35%), Positives = 96/164 (58%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E +  L++LYLT+N+LTD  +  L    +L  L
Sbjct:   937 LMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNNSLTDKCVPLLTGHPRLKIL 996

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:   997 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 1055

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:  1056 VMQLPEVKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 1099

GO:0003824 "catalytic activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

RGD|621308 Phlpp1 "PH domain and leucine rich repeat protein phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 59/164 (35%), Positives = 96/164 (58%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E +  L++LYLT+N+LTD  +  L    +L  L
Sbjct:   945 LMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNNSLTDKCVPLLTGHPRLKIL 1004

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:  1005 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 1063

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:  1064 VMQLPEVKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 1107

GO:0003824 "catalytic activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IMP;IDA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006470 "protein dephosphorylation" evidence=IMP;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009649 "entrainment of circadian clock" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

GO:0090038 "negative regulation of protein kinase C signaling cascade" evidence=IMP

UNIPROTKB|Q9WTR8 Phlpp1 "PH domain leucine-rich repeat protein phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 59/164 (35%), Positives = 96/164 (58%)

Query:     7 LQNSSKLKVLNISKNCLKMLP--SLNNE-NRYLEKLYLTSNALTD--IGPLNKCRQLNTL 61
             L  +  L+ LN S N L+ LP  +L+ E +  L++LYLT+N+LTD  +  L    +L  L
Sbjct:   945 LMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNNSLTDKCVPLLTGHPRLKIL 1004

Query:    62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             H+AYN + S P + ++   E+EE+ +SGN + ++P TI  +   +  +  HSN +   P 
Sbjct:  1005 HMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTI-MNCRRMHTVIAHSNCIEVFPE 1063

Query:   122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165
             +     ++ +DLS N L  + L   +P +LQ LD++GNPRL +D
Sbjct:  1064 VMQLPEVKCVDLSCNELSEITLPENLPPKLQELDLTGNPRLALD 1107

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-08
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-08
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	7e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 29/167 (17%)

Query: 12  KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSL 71
           ++  L +  N LK LP   N    ++ LY  SN LT I P      +  + ++ N IT L
Sbjct: 200 QITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTSI-PATLPDTIQEMELSINRITEL 256

Query: 72  PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVL 131
           P+   SA   ++ L L  N IS LP  +P+    LR L ++ N + + P  +L S +  L
Sbjct: 257 PERLPSA---LQSLDLFHNKISCLPENLPEE---LRYLSVYDNSIRTLPA-HLPSGITHL 309

Query: 132 DLSYNHLERL------NLNTL-------------IPKQLQYLDVSGN 159
           ++  N L  L       L TL             +P +LQ LDVS N
Sbjct: 310 NVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKN 356

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 10/129 (7%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
           L+ L++  N ++ LP+  +    +  L + SN+LT + P      L TL    NA+TSLP
Sbjct: 285 LRYLSVYDNSIRTLPA--HLPSGITHLNVQSNSLTAL-PETLPPGLKTLEAGENALTSLP 341

Query: 73  DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLD 132
               S   E++ L +S N I+ LP T+P   P +  L +  N LT+ P   L ++L+++ 
Sbjct: 342 A---SLPPELQVLDVSKNQITVLPETLP---PTITTLDVSRNALTNLPE-NLPAALQIMQ 394

Query: 133 LSYNHLERL 141
            S N+L RL
Sbjct: 395 ASRNNLVRL 403

Length = 754

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 48.2 bits (114), Expect = 7e-07
 Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           S L+ L++S N L  LP+L +E   L KL+  +N LT +  L     L  L V+ N +TS
Sbjct: 342 SGLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSLPALPS--GLKELIVSGNRLTS 396

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLR 129
           LP       SE++EL++SGN ++SLP  +P     L V R   N LT  P +L   SS  
Sbjct: 397 LP----VLPSELKELMVSGNRLTSLP-MLPSGLLSLSVYR---NQLTRLPESLIHLSSET 448

Query: 130 VLDLSYNHLERLNLNTL 146
            ++L  N L    L  L
Sbjct: 449 TVNLEGNPLSERTLQAL 465

Length = 788

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 46/156 (29%), Positives = 57/156 (36%), Gaps = 38/156 (24%)

Query: 36  LEKLYLTSNALTDIG------PLNKCRQLNTLHVAYNAIT---------SLPDNCISAWS 80
           LEKL L  N L           L   R L  L++A N I           L  NC     
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC----- 193

Query: 81  EMEELVLSGN-----GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS-------SL 128
            +E L L+ N     G S+L  T+      L VL L  N+LT      L+S       SL
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 129 RVLDLSYNHLERLNLNTLIP-----KQLQYLDVSGN 159
             L LS N +       L       + L  LD+ GN
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 57  QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
            L +L ++ N +T +PD        ++ L LSGN ++S+        P LR L L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 9   NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN-KCRQLNTLHVAYNA 67
             S LK L++S N ++ LPS       L+ L L+ N L+D+  L      LN L ++ N 
Sbjct: 138 LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSS 126
           I+ LP   I   S +EEL LS N I  L +++     +L  L L +N L   P  +   S
Sbjct: 198 ISDLPPE-IELLSALEELDLSNNSIIELLSSLSNL-KNLSGLELSNNKLEDLPESIGNLS 255

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
           +L  LDLS N +  ++    +   L+ LD+SGN   +  P    
Sbjct: 256 NLETLDLSNNQISSISSLGSLTN-LRELDLSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 9e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
          LE L L++N +TD+ PL+    L TL ++ N IT L 
Sbjct: 3  LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 83  EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHL 138
           + L LS N ++ +P+   +  P+L+VL L  N+LTS          SLR LDLS N+L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 17/136 (12%)

Query: 24  KMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83
           KM   LNN N  L         L D  P +    + TL +  N +TSLP    +   E+ 
Sbjct: 194 KMRACLNNGNAVLNVGESGLTTLPDCLPAH----ITTLVIPDNNLTSLP----ALPPELR 245

Query: 84  ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
            L +SGN ++SLP  +P   P L  L + SN LT  P   L S L  L +  N L  L  
Sbjct: 246 TLEVSGNQLTSLP-VLP---PGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSL-- 297

Query: 144 NTLIPKQLQYLDVSGN 159
             ++P  LQ L VS N
Sbjct: 298 -PVLPPGLQELSVSDN 312

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 105 HLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLI-PKQLQYLDVSGNP 160
           +L+ L L +N LT  P        +L+VLDLS N+L  ++         L+ LD+SGN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
          L+ L L++N LT I          L  L ++ N +TS+     S    +  L LSGN +
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 73  DNCISAWSEMEELVLSGNGISS-LPNTIPQSWPHLRVLRLHSNHLTSC--PTLYLSSSLR 129
           D+    W  ++ L L   G+   +PN I +   HL+ + L  N +     P+L   +SL 
Sbjct: 412 DSTKGKWF-IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLE 469

Query: 130 VLDLSYNHLERLNLNTLIPK------QLQYLDVSGN 159
           VLDLSYN     + N  IP+       L+ L+++GN
Sbjct: 470 VLDLSYN-----SFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG4194|consensus	873		99.82
KOG4194|consensus	873		99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
KOG0617|consensus	264		99.74
KOG0618|consensus	1081		99.68
KOG0444|consensus	1255		99.66
KOG0444|consensus	1255		99.63
KOG0472|consensus	565		99.61
KOG0472|consensus	565		99.58
KOG0617|consensus	264		99.58
KOG4237|consensus	498		99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
KOG4237|consensus	498		99.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.47
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.44
KOG0618|consensus	1081		99.42
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.31
KOG1909|consensus	382		99.25
KOG3207|consensus	505		99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
KOG0532|consensus	722		99.16
KOG1259|consensus	490		99.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
KOG0532|consensus	722		99.12
KOG1259|consensus	490		99.06
KOG0531|consensus	414		99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG3207|consensus	505		98.94
KOG0531|consensus	414		98.87
PLN03150	623	hypothetical protein; Provisional	98.86
KOG1909|consensus	382		98.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.72
KOG1859|consensus	1096		98.71
KOG1644|consensus	233		98.71
PLN03150	623	hypothetical protein; Provisional	98.69
KOG4579|consensus	177		98.68
KOG1859|consensus	1096		98.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.48
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.48
KOG1644|consensus	233		98.45
KOG2120|consensus	419		98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.4
KOG2982|consensus	418		98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG2982|consensus	418		98.19
KOG2120|consensus	419		98.13
KOG4658|consensus	889		98.12
KOG4658|consensus	889		98.09
KOG3665|consensus	699		98.09
KOG4579|consensus	177		97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG3665|consensus	699		97.75
KOG2123|consensus	388		97.73
KOG2123|consensus	388		97.65
KOG2739|consensus	260		97.56
KOG2739|consensus	260		96.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.73
KOG4341|consensus	483		95.55
KOG3864|consensus	221		95.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.39
smart00370	26	LRR Leucine-rich repeats, outliers.	94.39
KOG4308|consensus	478		93.49
KOG1947|consensus	482		91.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.21
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.76
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.82
KOG3864|consensus	221		85.63
KOG3763|consensus	585		84.29
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.06
KOG1947|consensus	482		81.85

>KOG4194|consensus

Probab=99.82  E-value=4.6e-21  Score=141.84  Aligned_cols=173  Identities=25%  Similarity=0.352  Sum_probs=75.1

Q ss_pred             cCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          9 NSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      ..+.|+.+|++.|.++.++ +.|..-.++++|++++|+|+.+  +.|..+.+|..|.++.|.++.++...|.+++.|+.|
T Consensus       147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            3334444444444444443 3333334444444444444444  344444444444444444444444444444444444


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCce
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL  162 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~  162 (183)
                      ++..|+++.+....|+++++|+.+.+.+|.+..+.  .|..+.+++++++..|.++.+...++.. +.|+.|++++|.+.
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence            44443333222222222222222222222222221  2444445555555555555444333333 55555555555555


Q ss_pred             eeCCCCcCCCcceeEEEEE
Q psy13911        163 HVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       163 ~~~~~~~~~~~~l~~l~l~  181 (183)
                      .+.+..+..+++|+.|+|+
T Consensus       307 rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  307 RIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             eeecchhhhcccceeEecc
Confidence            5555555555555555543

>KOG4194|consensus

Probab=99.82  E-value=4.4e-22  Score=147.16  Aligned_cols=140  Identities=24%  Similarity=0.309  Sum_probs=83.6

Q ss_pred             hhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911          7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME   83 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~   83 (183)
                      |..+.+|..|.++.|.++.+| ..|+.+++|+.|++..|+|...  ..|..+++|+.+.+..|.+..+.+++|..+.+++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            334445555555555555555 3444555666666655555544  4455566666666666666666666666666666


Q ss_pred             EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC--CCccCCCcccEEeccCcccccccCCCC
Q psy13911         84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--PTLYLSSSLRVLDLSYNHLERLNLNTL  146 (183)
Q Consensus        84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~~~~  146 (183)
                      ++++..|++..+..++..+++.|+.|+++.|.|..+  ..|..+++|+.|+++.|.++..+...+
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            776666666666655555666666666666666653  346666666666666666666554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=9.7e-19  Score=142.41  Aligned_cols=176  Identities=24%  Similarity=0.298  Sum_probs=102.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCC-Ccccc-ccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLK-MLPSL-NNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      +..+..++.|+.|++++|.+. .+|.. +..+++|+.|++++|.+.+......+++|++|++++|.+....+..+..+++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            456778888888888888876 46644 4477788888888877765433345666666776666666444444666666


Q ss_pred             CcEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911         82 MEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS  157 (183)
Q Consensus        82 L~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~  157 (183)
                      |++|++++|.+. .+|..+ ..+++|+.|++++|.+.+ .| .++.+++|+.|++++|.+++..+..+.. ++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            666666666654 233333 255666666666665543 22 2445555555555555554433322222 455555555


Q ss_pred             CCCceeeCCCCcCCCcceeEEEE
Q psy13911        158 GNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       158 ~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +|.+++..|..+.++++|+.|++
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             CceeccccChhHhCCCCCCEEEC
Confidence            55554444445555555554444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=6e-19  Score=143.61  Aligned_cols=177  Identities=24%  Similarity=0.227  Sum_probs=84.5

Q ss_pred             HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      +..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+.  ..+.++++|+.|++.+|.+....+..+..++
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            3445556666666666665542 445555555666666665555443  3344555555555555555544444455555


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS  157 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~  157 (183)
                      +|++|++.+|.+....+..+..+++|+.|++++|.+.+ .| .+..+++|+.|++++|.+.+..+..+.. ++|++|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            55555555555442222222244555555555554443 22 2334444555555555444332222211 444444444


Q ss_pred             CCCceeeCCCCcCCCcceeEEEE
Q psy13911        158 GNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       158 ~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +|.+.+..|..+..+++|+.|++
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEEC
Confidence            44444444444444444444443

>KOG0617|consensus

Probab=99.74  E-value=1.9e-20  Score=119.31  Aligned_cols=157  Identities=27%  Similarity=0.369  Sum_probs=138.0

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +++.++.|.+++|.++.+|+.+..+.+|+.|.+++|+++.. ..++.+++|+.|++..|.+...+.+ |+.++-|+.+++
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl  109 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL  109 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence            45667788999999999999999999999999999999998 7788999999999999999887776 999999999999


Q ss_pred             cCCcCc--cCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911         88 SGNGIS--SLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV  164 (183)
Q Consensus        88 ~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~  164 (183)
                      .+|.+.  .+|..+| .+..|+.|.+++|.+.-+| ..+.+++|+.+.+.+|.+-+.+.+......+++|++++|.++-.
T Consensus       110 tynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence            999887  6777777 7889999999999998876 58999999999999999888876665558899999999999877


Q ss_pred             CCC
Q psy13911        165 DPN  167 (183)
Q Consensus       165 ~~~  167 (183)
                      +|+
T Consensus       189 ppe  191 (264)
T KOG0617|consen  189 PPE  191 (264)
T ss_pred             Chh
Confidence            553

>KOG0618|consensus

Probab=99.68  E-value=1.1e-18  Score=134.79  Aligned_cols=179  Identities=39%  Similarity=0.608  Sum_probs=149.4

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccc--------------------------cccccccEEEccCCCCCCC--CCCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLN--------------------------NENRYLEKLYLTSNALTDI--GPLNK   54 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~~--~~~~~   54 (183)
                      ++.+....+.|+.|++..|++..+|+.+                          ..++.|+.|++.+|+++..  +.+-+
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN  381 (1081)
T ss_pred             CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence            3455667788888888888887665321                          1123466677777777665  67778


Q ss_pred             CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEecc
Q psy13911         55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLS  134 (183)
Q Consensus        55 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~  134 (183)
                      +.+|+.|++++|.+..+++..+.++..|++|+++||.++.+|..+. .+..|++|...+|.+..+|.+..++.|+.+|++
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva-~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA-NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS  460 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH-hhhhhHHHhhcCCceeechhhhhcCcceEEecc
Confidence            8999999999999999999999999999999999999999998776 889999999999999999999999999999999


Q ss_pred             CcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEEe
Q psy13911        135 YNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQL  182 (183)
Q Consensus       135 ~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~  182 (183)
                      .|.++.+......+ ++|++||++||.....+...|+.++++...++++
T Consensus       461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence            99999987777667 9999999999987777778888888888777764

>KOG0444|consensus

Probab=99.66  E-value=1.6e-18  Score=130.02  Aligned_cols=74  Identities=30%  Similarity=0.398  Sum_probs=35.1

Q ss_pred             ccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        106 LRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       106 L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |..++++.|.+..+| .+..+.+|+.|++++|.|++.....-...++++|+++.|+++.. |.++..+++|+.||+
T Consensus       224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHh
Confidence            333344444333333 23444455555555555555433322224555555555555544 455555555555543

>KOG0444|consensus

Probab=99.63  E-value=5.5e-18  Score=127.22  Aligned_cols=175  Identities=25%  Similarity=0.314  Sum_probs=115.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCcccc--ccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAIT--SLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~   80 (183)
                      |..+..++.+++|.+....+..+|..++.+.+|++|.+.+|++..+ +.++.++.|+.+.+..|+++  ++|+. +..+.
T Consensus        25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~  103 (1255)
T KOG0444|consen   25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLK  103 (1255)
T ss_pred             chhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccc
Confidence            3444556666666666666666776667777777777777776655 66667777777777776665  44444 45666


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSG  158 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~  158 (183)
                      .|.+++++.|+++..|...- ..+++..|+++.|.|..+|.  +.+++.|-.|++++|.+...|+..-...+|++|++++
T Consensus       104 dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             cceeeecchhhhhhcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence            77777777777777776654 55667777777777777764  5566667777777777777665554446677777777


Q ss_pred             CCceeeCCCCcCCCcceeEEEE
Q psy13911        159 NPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       159 n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |++......-+..+++|+.|.+
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhc
Confidence            7766655555555555555544

>KOG0472|consensus

Probab=99.61  E-value=8.6e-19  Score=124.78  Aligned_cols=172  Identities=25%  Similarity=0.291  Sum_probs=97.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      +..+.....+.++++++|.+..+++.++.+..+..++-.+|+++.. +++.++.++..+++.+|.++..++..+. +..|
T Consensus       107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L  185 (565)
T KOG0472|consen  107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRL  185 (565)
T ss_pred             cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHH
Confidence            3344445555555555555555555555555555555555555544 3344444555555555555555554333 5556


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCC------------------------CcccEEeccCccc
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS------------------------SSLRVLDLSYNHL  138 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------~~L~~l~l~~n~l  138 (183)
                      ++++...|.++.+|+.+. .+.+|..|++.+|++..+|.|++|                        +++..+|+++|++
T Consensus       186 ~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  186 KHLDCNSNLLETLPPELG-GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             HhcccchhhhhcCChhhc-chhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            666666666666665554 555555555555555555444444                        5556666667777


Q ss_pred             ccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEE
Q psy13911        139 ERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVY  179 (183)
Q Consensus       139 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~  179 (183)
                      ++.|.++....++.+||+++|.+++. |..++++ +|+++-
T Consensus       265 ke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  265 KEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLA  303 (565)
T ss_pred             ccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehh
Confidence            77665555556777777777777766 5556666 555543

>KOG0472|consensus

Probab=99.58  E-value=5e-18  Score=120.92  Aligned_cols=157  Identities=32%  Similarity=0.375  Sum_probs=111.6

Q ss_pred             HHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME   83 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~   83 (183)
                      ..+.++.++..+++.+|.+...|...-.++.|++++.-.|-++.+ +.++.+.+|..+++..|++..+|.  |..|+.|+
T Consensus       154 ~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~  231 (565)
T KOG0472|consen  154 EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLK  231 (565)
T ss_pred             hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHH
Confidence            333444444444444444444443222345555555555555555 455666667777777777777663  77888888


Q ss_pred             EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCce
Q psy13911         84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL  162 (183)
Q Consensus        84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~  162 (183)
                      +++++.|+++.+|.....++..+..||+.+|+++.+|. +..+.+|.++|+++|.++..+...... +++.|-+.||++.
T Consensus       232 Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  232 ELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            88888888888888777788999999999999999984 667788999999999999988665544 8889999999976


Q ss_pred             ee
Q psy13911        163 HV  164 (183)
Q Consensus       163 ~~  164 (183)
                      .+
T Consensus       311 Ti  312 (565)
T KOG0472|consen  311 TI  312 (565)
T ss_pred             HH
Confidence            54

>KOG0617|consensus

Probab=99.58  E-value=2.2e-17  Score=105.37  Aligned_cols=142  Identities=24%  Similarity=0.290  Sum_probs=126.3

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccc-cCcccccCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITS-LPDNCISAWS   80 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~   80 (183)
                      ++.-++.+.+|+.|++.+|++..+|..++.+++|+.|.++-|++... ..|+.++.|+.|++++|.+.. ..++.|.-+.
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence            45667889999999999999999999999999999999999988777 789999999999999998873 3455577788


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccccCCC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNT  145 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~  145 (183)
                      +|+.+.+++|.++.+|..+. .+++|+.|.+.+|.+-+.|. ++.++.|+++++++|.++-++++.
T Consensus       128 tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  128 TLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            99999999999999999887 89999999999998888884 888899999999999998887654

>KOG4237|consensus

Probab=99.56  E-value=1e-16  Score=113.91  Aligned_cols=79  Identities=25%  Similarity=0.315  Sum_probs=62.1

Q ss_pred             CCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEE
Q psy13911        102 SWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRV  178 (183)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l  178 (183)
                      .+++|+++++++|.++.+.  .|.+...++.|.+..|.+..+....+.. ..|+.|++.+|+++.+.|.+|....+|.++
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            5677777888888777763  4667777778888888777776666655 788899999999999999999988888887


Q ss_pred             EE
Q psy13911        179 YI  180 (183)
Q Consensus       179 ~l  180 (183)
                      .+
T Consensus       352 ~l  353 (498)
T KOG4237|consen  352 NL  353 (498)
T ss_pred             eh
Confidence            65

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.1e-13  Score=108.65  Aligned_cols=152  Identities=33%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCC-----------------C-CCCCCEEeeCCccccccCc
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN-----------------K-CRQLNTLHVAYNAITSLPD   73 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~-l~~L~~l~l~~~~~~~~~~   73 (183)
                      .|+.|++.+|.+..+|..   +++|+.|++++|++..++.+.                 . ..+|+.|++++|.++.++.
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             hcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence            344555555555555432   345667777776666542210                 0 1245555555555554432


Q ss_pred             ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccE
Q psy13911         74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQY  153 (183)
Q Consensus        74 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~  153 (183)
                      .    ..+++.|++.+|.+..+|..    ..+|+.|++++|.++.+|..  ..+|+.|++++|.++.++..   +.+++.
T Consensus       360 l----p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~  426 (788)
T PRK15387        360 L----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML---PSGLLS  426 (788)
T ss_pred             C----CcccceehhhccccccCccc----ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc---hhhhhh
Confidence            1    12344444444444444321    23456666666666655532  23566666666666655421   245556


Q ss_pred             EEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        154 LDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       154 l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |++++|.++.+ |..+.+++.|+.+++
T Consensus       427 L~Ls~NqLt~L-P~sl~~L~~L~~LdL  452 (788)
T PRK15387        427 LSVYRNQLTRL-PESLIHLSSETTVNL  452 (788)
T ss_pred             hhhccCccccc-ChHHhhccCCCeEEC
Confidence            66666666654 445556666666655

>KOG4237|consensus

Probab=99.49  E-value=3.2e-16  Score=111.42  Aligned_cols=167  Identities=24%  Similarity=0.330  Sum_probs=105.9

Q ss_pred             cEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEEEec-
Q psy13911         14 KVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEELVLS-   88 (183)
Q Consensus        14 ~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~-   88 (183)
                      ..+.+..|+|+.+| ..|+.+++|+.|++++|.|+.+  .+|..+..+..+-+.+ |.|+.++...|..+.+++-|.+. 
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            45777788888877 6778888888888888888887  6677777766555444 77777777666666555544443 


Q ss_pred             -----------------------CCcCccCCCCCCCCCCCccEEEeeCCcC-----------------------------
Q psy13911         89 -----------------------GNGISSLPNTIPQSWPHLRVLRLHSNHL-----------------------------  116 (183)
Q Consensus        89 -----------------------~~~l~~~~~~~~~~~~~L~~L~l~~~~~-----------------------------  116 (183)
                                             +|.+..++...++.+..++++.+..|.+                             
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~  229 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY  229 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence                                   3333334433333444444443333321                             


Q ss_pred             -------------------CC--------------CC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCC
Q psy13911        117 -------------------TS--------------CP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP  160 (183)
Q Consensus       117 -------------------~~--------------~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~  160 (183)
                                         .+              .|  .|..++.|+.+++++|+++++...+|.. ..+++|.+..|+
T Consensus       230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence                               00              01  1455567777777777777777666665 677777777777


Q ss_pred             ceeeCCCCcCCCcceeEEEE
Q psy13911        161 RLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       161 ~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +..+...+|.++..|+.|+|
T Consensus       310 l~~v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             HHHHHHHhhhccccceeeee
Confidence            77777777777777777655

>PLN03210 Resistant to P

Probab=99.47  E-value=7.8e-13  Score=109.44  Aligned_cols=165  Identities=24%  Similarity=0.306  Sum_probs=81.8

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCC-CCCCCCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEEEec
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .+|+.|++.++.+..++..+..+++|+.++++++. +..++.+..+++|+.|++.+|. +..++ ..+..+.+|+.+++.
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCC
Confidence            34555555555555544444455555555555443 3333445555566666665543 22222 235555666666665


Q ss_pred             CC-cCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCC---------------------
Q psy13911         89 GN-GISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNT---------------------  145 (183)
Q Consensus        89 ~~-~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~---------------------  145 (183)
                      +| .++.+|...  .+++|+.|++++|. +..+|..  ..+|+.|++++|.+..++...                     
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence            54 344444433  34555555555542 2222221  124555555555544433211                     


Q ss_pred             ---------CCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        146 ---------LIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       146 ---------~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                               ..+++|+.|++++|+.....|..+.++++|+.|+|
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L  809 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI  809 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence                     00135666666666544444666667777776665

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.47  E-value=3.8e-14  Score=92.64  Aligned_cols=104  Identities=30%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             cccEEEccCCCCCCCCCCC-CCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         35 YLEKLYLTSNALTDIGPLN-KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      .++.|++.+|.|+.+..+. .+.+|+.|++++|.++.+..  +..++.|++|++++|.++.+.......+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            3444444444444443333 23444444444444444332  33444444444444444444322111234445555555


Q ss_pred             CcCCCCC---CccCCCcccEEeccCccccc
Q psy13911        114 NHLTSCP---TLYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus       114 ~~~~~~~---~~~~~~~L~~l~l~~n~l~~  140 (183)
                      |.+..+.   .+..+++|+.|++.+|.+++
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            4444332   23344445555555554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.44  E-value=6.8e-13  Score=104.45  Aligned_cols=155  Identities=30%  Similarity=0.426  Sum_probs=83.3

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      .++.|++++|.+..+|..+.  .+|+.|++++|.++.++. .-..+|+.|++++|.+..++.. +  ..+|+.|++++|.
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~  273 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITELPER-L--PSALQSLDLFHNK  273 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCcCChh-H--hCCCCEEECcCCc
Confidence            46666666666666664332  366666666666665421 0123456666666665554432 2  2356666666666


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCCCC-cc-------------------CCCcccEEeccCcccccccCCCCCCCCc
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LY-------------------LSSSLRVLDLSYNHLERLNLNTLIPKQL  151 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-------------------~~~~L~~l~l~~n~l~~~~~~~~~~~~l  151 (183)
                      ++.+|..+.   .+|+.|++++|.++.+|. +.                   ..++|+.|++++|.++.++...  +++|
T Consensus       274 L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL  348 (754)
T PRK15370        274 ISCLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPEL  348 (754)
T ss_pred             cCccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcc
Confidence            665554332   356666666665555432 10                   1135566666666665544221  2567


Q ss_pred             cEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        152 QYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       152 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +.|++++|.++.++ ..+.  +.|+.|+|
T Consensus       349 ~~L~Ls~N~L~~LP-~~lp--~~L~~LdL  374 (754)
T PRK15370        349 QVLDVSKNQITVLP-ETLP--PTITTLDV  374 (754)
T ss_pred             cEEECCCCCCCcCC-hhhc--CCcCEEEC
Confidence            77777777776543 2221  35666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.44  E-value=5.7e-13  Score=104.86  Aligned_cols=147  Identities=31%  Similarity=0.436  Sum_probs=91.9

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      ++|+.|++++|.+..+|..+.  ..|+.|++++|.+..++ .+  ..+|+.|++++|.+..++.. +  ..+|+.|++++
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPEN-L--PEELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCccccc-c--CCCCcEEECCC
Confidence            467778888777777765432  35666666666665541 11  13455555555555544332 1  13455555555


Q ss_pred             CcCccCCCCCC------------------CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCc
Q psy13911         90 NGISSLPNTIP------------------QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQL  151 (183)
Q Consensus        90 ~~l~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l  151 (183)
                      |.++.+|..+.                  ...++|+.|++++|.++.+|.. -.++|+.|++++|.++.++...  +++|
T Consensus       293 N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~l--p~~L  369 (754)
T PRK15370        293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPETL--PPTI  369 (754)
T ss_pred             CccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChhh--cCCc
Confidence            54444332111                  0125688888888888877641 1368999999999998775432  3789


Q ss_pred             cEEEcCCCCceeeCCC
Q psy13911        152 QYLDVSGNPRLHVDPN  167 (183)
Q Consensus       152 ~~l~l~~n~~~~~~~~  167 (183)
                      ++|++++|.++.+++.
T Consensus       370 ~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        370 TTLDVSRNALTNLPEN  385 (754)
T ss_pred             CEEECCCCcCCCCCHh
Confidence            9999999999987543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.44  E-value=1.3e-12  Score=102.80  Aligned_cols=35  Identities=34%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI   49 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   49 (183)
                      +++.|.+.+|.++.+|..   +++|+.|++++|+++.+
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL  257 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc
Confidence            567777777777766643   35667777777766655

>KOG0618|consensus

Probab=99.42  E-value=9.4e-16  Score=118.93  Aligned_cols=177  Identities=29%  Similarity=0.373  Sum_probs=113.2

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ++.+++.|.+|+.+...+|.++++|..+....+|+.+....|.++.++. .....+|++|++..|.+..+++..+.....
T Consensus       256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            4577778888888888888887777777777777777777777777733 344788888888888887776654433222


Q ss_pred             -CcEEEecCCcCccCCC------------------------CCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEecc
Q psy13911         82 -MEELVLSGNGISSLPN------------------------TIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLS  134 (183)
Q Consensus        82 -L~~l~l~~~~l~~~~~------------------------~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~  134 (183)
                       ++.++.+.+.+...|.                        -.+...+.|+.|+++.|++..+|+  +.++..|++|+++
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence             4444444333333221                        111245666666666666666653  5566666667777


Q ss_pred             CcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        135 YNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       135 ~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +|+++.++........|++|...+|.+... | .+..++.|+.+|++
T Consensus       416 GNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  416 GNKLTTLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             cchhhhhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecc
Confidence            776666653333336666677777776666 3 66677777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.40  E-value=6.5e-14  Score=91.53  Aligned_cols=125  Identities=34%  Similarity=0.420  Sum_probs=44.1

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      ++..++.|++.++.++.+...-..+.+|+.|++++|.++.+..+..++.|+.|++++|.++.+.......+++|++|+++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            44466777788777777654333466777788888877777777777778888888887777654322356778888888


Q ss_pred             CCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEec
Q psy13911         89 GNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDL  133 (183)
Q Consensus        89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l  133 (183)
                      +|.+..+.. .....+++|+.|++.+|.++..+.     +..+|+|+.||-
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777765543 122356777778887777765442     455567776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=3.1e-14  Score=102.71  Aligned_cols=178  Identities=26%  Similarity=0.253  Sum_probs=104.7

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC-ccccccccc---cccEEEccCCCCCCC------CCCCCC-CCCCEEeeCCcccccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM-LPSLNNENR---YLEKLYLTSNALTDI------GPLNKC-RQLNTLHVAYNAITSL   71 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~---~L~~L~l~~~~~~~~------~~~~~l-~~L~~l~l~~~~~~~~   71 (183)
                      +..++..+++|+.|+++++.+.. .+..+..+.   +|+.|++++|++...      ..+..+ ++|+.+++.+|.++..
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  152 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA  152 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence            34556667777788887777663 223333333   377777777776632      233445 6777788877776621


Q ss_pred             ----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCc
Q psy13911         72 ----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYN  136 (183)
Q Consensus        72 ----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n  136 (183)
                          ....+..+.+++++++.+|.++.     ++.... ..++|+.|++++|.+++..      .+..+++|+.|++++|
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence                12224455677777777776652     111122 3457788888877766421      2455677888888887


Q ss_pred             ccccccCCCCC------CCCccEEEcCCCCceeeC----CCCcCCCcceeEEEEE
Q psy13911        137 HLERLNLNTLI------PKQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       137 ~l~~~~~~~~~------~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~  181 (183)
                      .+++.....+.      .+.+++|++++|.+++..    ...+..+++|+.++++
T Consensus       232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence            77653222111      157778888887775211    2344555667776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.35  E-value=2e-11  Score=101.31  Aligned_cols=146  Identities=23%  Similarity=0.303  Sum_probs=89.3

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEEEecCC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      |+.|++.++.+..+|..+ .+.+|+.|+++++.+... ..+..+++|+.++++++. +..++.  +..+++|+.|++.+|
T Consensus       591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence            444444444444455444 345667777777666655 445567777777777643 333332  556677777777775


Q ss_pred             -cCccCCCCCCCCCCCccEEEeeCC-cCCCCCCccCCCcccEEeccCccc-ccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         91 -GISSLPNTIPQSWPHLRVLRLHSN-HLTSCPTLYLSSSLRVLDLSYNHL-ERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        91 -~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~l~~n~l-~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                       .+..+|..+. .+++|+.|++++| .+..+|....+++|+.|++++|.. ..++ .  ...++++|++++|.+..++
T Consensus       668 ~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~--~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        668 SSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-D--ISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CCccccchhhh-ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-c--ccCCcCeeecCCCcccccc
Confidence             3456665544 6777777777776 555666544667788888877632 2222 1  1267788888888876653

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.35  E-value=9.8e-13  Score=97.71  Aligned_cols=171  Identities=28%  Similarity=0.382  Sum_probs=125.6

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccc-cccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENR-YLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      +...+.++.+++.++.+..++....... +|+.|++++|++..+ ..+..++.|+.|++++|.+..+++. ....+.++.
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~  190 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNN  190 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhh
Confidence            4455778899999999999988877774 899999999999888 6788899999999999999988764 336788999


Q ss_pred             EEecCCcCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee
Q psy13911         85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH  163 (183)
Q Consensus        85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~  163 (183)
                      +++++|.++.+|.... ....|+++.+++|. +.....+.....+..+.+.+|.+...+......+.+++|++++|.++.
T Consensus       191 L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         191 LDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence            9999999998887642 34568888888884 333334566666666666666665532222223557777777777776


Q ss_pred             eCCCCcCCCcceeEEEEE
Q psy13911        164 VDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       164 ~~~~~~~~~~~l~~l~l~  181 (183)
                      ++.  +....+++.++++
T Consensus       270 i~~--~~~~~~l~~L~~s  285 (394)
T COG4886         270 ISS--LGSLTNLRELDLS  285 (394)
T ss_pred             ccc--ccccCccCEEecc
Confidence            644  6666666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.31  E-value=1e-13  Score=100.09  Aligned_cols=178  Identities=24%  Similarity=0.249  Sum_probs=109.2

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC-------ccccccccccccEEEccCCCCCCC--CCCCCC---CCCCEEeeCCccccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM-------LPSLNNENRYLEKLYLTSNALTDI--GPLNKC---RQLNTLHVAYNAITS   70 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l---~~L~~l~l~~~~~~~   70 (183)
                      +...+...+.++++++.++.+..       ++..+..+++|+.|++++|.+...  ..+..+   ++|+.|++++|.+..
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            44556667777888887776652       223455567888888888877643  222222   458888888877662


Q ss_pred             c----CcccccCC-CCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCC--C----CccCCCcccEEecc
Q psy13911         71 L----PDNCISAW-SEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSC--P----TLYLSSSLRVLDLS  134 (183)
Q Consensus        71 ~----~~~~~~~~-~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~~~L~~l~l~  134 (183)
                      .    ....+..+ ++++.+++.+|.++.     +... +..+..+++|++++|.+++.  +    .+...+.|+.++++
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  201 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN  201 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence            1    11224445 778888888887762     2212 22556788888888877742  1    23444688888888


Q ss_pred             CcccccccCCCC----C-CCCccEEEcCCCCceeeCCCCcC-----CCcceeEEEEE
Q psy13911        135 YNHLERLNLNTL----I-PKQLQYLDVSGNPRLHVDPNHFK-----SYRSYVRVYIQ  181 (183)
Q Consensus       135 ~n~l~~~~~~~~----~-~~~l~~l~l~~n~~~~~~~~~~~-----~~~~l~~l~l~  181 (183)
                      +|.+++.....+    . .++|++|++++|++++.....+.     ..+.|+.++++
T Consensus       202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            887765432221    1 26788888888887753222221     23677777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909|consensus

Probab=99.25  E-value=8.7e-14  Score=97.64  Aligned_cols=180  Identities=24%  Similarity=0.271  Sum_probs=133.5

Q ss_pred             cHHHHhhcCCCCcEEEccCCcCCC--cc---ccccccccccEEEccCCCCCCC--C-------------CCCCCCCCCEE
Q psy13911          2 ALELFLQNSSKLKVLNISKNCLKM--LP---SLNNENRYLEKLYLTSNALTDI--G-------------PLNKCRQLNTL   61 (183)
Q Consensus         2 ~~~~~~~~~~~L~~l~l~~~~~~~--~~---~~~~~~~~L~~L~l~~~~~~~~--~-------------~~~~l~~L~~l   61 (183)
                      .+.+++..++.|+.++++.|-+..  ++   ..++.+..|++|++.+|.+...  .             ....-+.|+++
T Consensus        83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF  162 (382)
T ss_pred             HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence            356778899999999999998763  33   5577789999999999998766  1             13456789999


Q ss_pred             eeCCccccccC----cccccCCCCCcEEEecCCcCcc----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCc
Q psy13911         62 HVAYNAITSLP----DNCISAWSEMEELVLSGNGISS----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSS  127 (183)
Q Consensus        62 ~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~  127 (183)
                      ....|.+...+    ...++..+.++.+.+..|++..    .-...+..++.|+.|++.+|.++...      .+..++.
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            99999887433    3446778899999999998762    11233448899999999999888532      4677788


Q ss_pred             ccEEeccCcccccccCCCCCC------CCccEEEcCCCCceeeC----CCCcCCCcceeEEEEE
Q psy13911        128 LRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       128 L~~l~l~~n~l~~~~~~~~~~------~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~  181 (183)
                      |+.+++++|.+.+-+..++..      ++|+.+.+.+|.++.-.    ..++...|.|..|.|+
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            999999999888776555433      78999999999876422    3344556666666553

>KOG3207|consensus

Probab=99.21  E-value=2.4e-12  Score=93.05  Aligned_cols=175  Identities=19%  Similarity=0.223  Sum_probs=111.3

Q ss_pred             HHhhcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCcccccc-Cccccc
Q psy13911          5 LFLQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSL-PDNCIS   77 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~-~~~~~~   77 (183)
                      .+...|+.++.|+++.|-+..+   -.....+++|+.|.++.|++...   ..-..++.|+.|.++.|+++-- ......
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            3566777888888877766542   24455677788888887776654   1122456777788887777611 122245


Q ss_pred             CCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCC------C-
Q psy13911         78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTL------I-  147 (183)
Q Consensus        78 ~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~------~-  147 (183)
                      .+++++.|++.+|..-.........++.|++|++++|.+...+   ..+.++.|..++++.++++++.....      . 
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            6778888888877321111111124577889999999877654   46777888888888888877644332      1 


Q ss_pred             CCCccEEEcCCCCceeeC-CCCcCCCcceeEEE
Q psy13911        148 PKQLQYLDVSGNPRLHVD-PNHFKSYRSYVRVY  179 (183)
Q Consensus       148 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~  179 (183)
                      .+++++|++..|++.+.. ...+..+++|+.+.
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhh
Confidence            178999999999886653 23333444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=1.1e-11  Score=92.09  Aligned_cols=161  Identities=32%  Similarity=0.377  Sum_probs=127.9

Q ss_pred             HHHhhcCC-CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCC-CCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          4 ELFLQNSS-KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN-KCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         4 ~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      +....... +|+.+++++|.+..++..+..++.|+.|++++|++..+.... ..+.|+.+++++|.+..+++. ......
T Consensus       132 ~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~  210 (394)
T COG4886         132 PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSA  210 (394)
T ss_pred             ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhh
Confidence            33444553 899999999999999888889999999999999999985544 889999999999999988874 345566


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      |+++.+.+|.+...+.... ...++..+.+.+|.+...+ ..+.++.++++++++|.++++.. .....+++.+++++|.
T Consensus       211 L~~l~~~~N~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         211 LEELDLSNNSIIELLSSLS-NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             hhhhhhcCCcceecchhhh-hcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcc
Confidence            9999999996655555554 7788888888888877743 46777789999999999999876 2223899999999998


Q ss_pred             ceeeCCC
Q psy13911        161 RLHVDPN  167 (183)
Q Consensus       161 ~~~~~~~  167 (183)
                      +....+.
T Consensus       289 ~~~~~~~  295 (394)
T COG4886         289 LSNALPL  295 (394)
T ss_pred             ccccchh
Confidence            8765443

>KOG0532|consensus

Probab=99.16  E-value=8.1e-13  Score=98.35  Aligned_cols=145  Identities=29%  Similarity=0.386  Sum_probs=69.7

Q ss_pred             EEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCcc
Q psy13911         16 LNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS   94 (183)
Q Consensus        16 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   94 (183)
                      .+++.|.+..+|..+..+..|+.+.+..|.+..+ .++.++..|..++++.|+++.++.. + +.--|+.+.+.+|.++.
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-l-C~lpLkvli~sNNkl~~  157 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-L-CDLPLKVLIVSNNKLTS  157 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-h-hcCcceeEEEecCcccc
Confidence            4444555555554444455555555555554444 4444445555555555555544443 1 12234445555555555


Q ss_pred             CCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCc----------------------ccEEeccCcccccccCCCCCCCCc
Q psy13911         95 LPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSS----------------------LRVLDLSYNHLERLNLNTLIPKQL  151 (183)
Q Consensus        95 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~----------------------L~~l~l~~n~l~~~~~~~~~~~~l  151 (183)
                      +|..+. ....|..++.+.|.+..+| .++++.+                      |..||+++|++..+|........|
T Consensus       158 lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~L  236 (722)
T KOG0532|consen  158 LPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHL  236 (722)
T ss_pred             CCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhh
Confidence            444443 4444444444444444433 2334444                      555555555555555444434555


Q ss_pred             cEEEcCCCCcee
Q psy13911        152 QYLDVSGNPRLH  163 (183)
Q Consensus       152 ~~l~l~~n~~~~  163 (183)
                      ++|-+.+|+++.
T Consensus       237 q~l~LenNPLqS  248 (722)
T KOG0532|consen  237 QVLQLENNPLQS  248 (722)
T ss_pred             eeeeeccCCCCC
Confidence            555555555544

>KOG1259|consensus

Probab=99.14  E-value=3.4e-12  Score=88.74  Aligned_cols=127  Identities=22%  Similarity=0.229  Sum_probs=75.2

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      .|+.+++++|.++.+..++.-.|.++.|+++.|++..+..+..+++|+.|++++|.++.+.. .-..+.+++++.+.+|.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhh
Confidence            45566666666666666666666666666666666666556666666666666666654322 22345566666666666


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCC---CCccCCCcccEEeccCcccccc
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSC---PTLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      ++.+.. .. .+-+|..|++++|+|...   ..+++++-|+.+.+.+|.+..+
T Consensus       364 iE~LSG-L~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  364 IETLSG-LR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             Hhhhhh-hH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            655532 11 344556666666666543   3456666666666666655544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=9.3e-11  Score=63.73  Aligned_cols=59  Identities=32%  Similarity=0.550  Sum_probs=34.8

Q ss_pred             CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911         57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH  115 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  115 (183)
                      +|++|++++|.++.+++..|..+++|+++++++|.++.++...+..+++|+++++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555666666665555555556666666666666665555555556666666665554

...

>KOG0532|consensus

Probab=99.12  E-value=8e-13  Score=98.38  Aligned_cols=153  Identities=24%  Similarity=0.311  Sum_probs=124.9

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ++..++++..|+.++++.|+++.+|..+..++ |+.+.+++|++... ..++....|..++.+.|.+..++.. +..+.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~s  190 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTS  190 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHH
Confidence            46677888899999999999998887766554 78888999998887 6666778888999999999988776 778889


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCC---ccEEEcC
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQ---LQYLDVS  157 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~---l~~l~l~  157 (183)
                      ++.+++..|++..+|....  .-.|..||++.|++..+| .|..+..|++|-|.+|.++..+......-.   .++|+.+
T Consensus       191 lr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             HHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence            9999999999999999876  456899999999999999 599999999999999999987654443322   3455555


Q ss_pred             CC
Q psy13911        158 GN  159 (183)
Q Consensus       158 ~n  159 (183)
                      -+
T Consensus       269 A~  270 (722)
T KOG0532|consen  269 AC  270 (722)
T ss_pred             hc
Confidence            44

>KOG1259|consensus

Probab=99.06  E-value=1e-11  Score=86.41  Aligned_cols=129  Identities=26%  Similarity=0.311  Sum_probs=84.0

Q ss_pred             cccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEe
Q psy13911         33 NRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL  111 (183)
Q Consensus        33 ~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l  111 (183)
                      +..|..+++++|.|+.+ ....-.+.++.|+++.|.+..+..  ++.+++|..+++++|.++.+..+-. .+-++++|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~-KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHL-KLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHh-hhcCEeeeeh
Confidence            34566777777777766 333445677777777777765543  5667777777777777766654433 5667777777


Q ss_pred             eCCcCCCCCCccCCCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCceee
Q psy13911        112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLHV  164 (183)
Q Consensus       112 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~~  164 (183)
                      +.|.+.+...++.+.+|..|++++|.|.......-.  .+-|+.+.+.+|++..+
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            777777666666777777777777776654322211  16667777777776654

>KOG0531|consensus

Probab=99.05  E-value=2.2e-11  Score=90.94  Aligned_cols=156  Identities=24%  Similarity=0.242  Sum_probs=98.0

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +..+.+++.+++.+|.+..+...+..+++|+.|++++|.|+.+..+..++.|+.|++.+|.+..+..  +..+..++.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--Cccchhhhccc
Confidence            5566777777777777777766566777778888888777777666677777777777777776554  44567777777


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      +++|.+..+.......+.+++.+++.+|.+..+..+.....+..+++..|.++.+....... ..++.+++.+|++...
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence            77777776655101256677777777776665544333334444455555555442211110 1256666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=3e-10  Score=61.69  Aligned_cols=56  Identities=36%  Similarity=0.519  Sum_probs=26.5

Q ss_pred             ccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         36 LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        36 L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      |+.|++++|+++.+  ..|..+++|+++++++|.++.+++.+|..+++|+++++++|.
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444443  234444444444555455544444445555555555555443

...

>KOG3207|consensus

Probab=98.94  E-value=3.4e-10  Score=82.16  Aligned_cols=162  Identities=22%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCcccc--ccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCccccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSL--NNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCIS   77 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~   77 (183)
                      +-++...+++|+.|+++.|.+....+.  -..++.++.|.++.|.++.-   .....+++|+.|.+..|...........
T Consensus       164 v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~  243 (505)
T KOG3207|consen  164 VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK  243 (505)
T ss_pred             HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence            456678899999999999988754322  22468899999999999854   3355789999999998853333333355


Q ss_pred             CCCCCcEEEecCCcCccCCCC-CCCCCCCccEEEeeCCcCCCCC--C------ccCCCcccEEeccCcccccccCCCCC-
Q psy13911         78 AWSEMEELVLSGNGISSLPNT-IPQSWPHLRVLRLHSNHLTSCP--T------LYLSSSLRVLDLSYNHLERLNLNTLI-  147 (183)
Q Consensus        78 ~~~~L~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~------~~~~~~L~~l~l~~n~l~~~~~~~~~-  147 (183)
                      .+..|++|++.+|.+-.++.. ....++.|..|.++.+++.++.  .      ....++|++|++..|.+.++..-.-. 
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~  323 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR  323 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence            578899999999988877742 2237889999999999888752  2      35568999999999999887543322 


Q ss_pred             -CCCccEEEcCCCCceee
Q psy13911        148 -PKQLQYLDVSGNPRLHV  164 (183)
Q Consensus       148 -~~~l~~l~l~~n~~~~~  164 (183)
                       ..+++.+.+..|.++..
T Consensus       324 ~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  324 TLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccchhhhhhccccccccc
Confidence             17788888888877543

>KOG0531|consensus

Probab=98.87  E-value=1.1e-10  Score=87.20  Aligned_cols=152  Identities=29%  Similarity=0.347  Sum_probs=107.8

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      .+..++.+.+..|.+..+-..+..+.++..+++.+|.+..+.. +..+++|+.+++++|.|..+..  +..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            3455566667777777655556777888888888888888866 7778888888888888887655  556677888888


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                      .+|.++.+....  .+..++.+++++|.+..+..  ...+.+++.+.+.+|.+..+...... ..+..+++..|.++.+.
T Consensus       148 ~~N~i~~~~~~~--~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~-~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  148 SGNLISDISGLE--SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL-KKLVLLSLLDNKISKLE  224 (414)
T ss_pred             ccCcchhccCCc--cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH-HHHHHhhcccccceecc
Confidence            888887775543  36778888888888877766  47777888888888877765422211 33444577777776654

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=1.1e-08  Score=80.23  Aligned_cols=82  Identities=24%  Similarity=0.413  Sum_probs=43.7

Q ss_pred             ccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCcc-CCCCCCCCCCCccEEEee
Q psy13911         36 LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS-LPNTIPQSWPHLRVLRLH  112 (183)
Q Consensus        36 L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~~L~~L~l~  112 (183)
                      ++.|++++|.+.+.  ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|..+ ..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECc
Confidence            45555555555543  334555556666666655554444345555566666666665553 33222 255556666666


Q ss_pred             CCcCCC
Q psy13911        113 SNHLTS  118 (183)
Q Consensus       113 ~~~~~~  118 (183)
                      +|.+++
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            655553

>KOG1909|consensus

Probab=98.80  E-value=2.4e-10  Score=80.63  Aligned_cols=160  Identities=23%  Similarity=0.256  Sum_probs=120.3

Q ss_pred             cHHHHhhcCCCCcEEEccCCcCCCcc--------------ccccccccccEEEccCCCCCCC------CCCCCCCCCCEE
Q psy13911          2 ALELFLQNSSKLKVLNISKNCLKMLP--------------SLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTL   61 (183)
Q Consensus         2 ~~~~~~~~~~~L~~l~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l   61 (183)
                      .+...++++..|++|.+.+|.+....              .-...-++|+.+.+.+|++...      ..|...+.|+.+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev  190 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV  190 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence            35678899999999999999987432              1234457899999999998876      346677899999


Q ss_pred             eeCCccccc----cCcccccCCCCCcEEEecCCcCccCC----CCCCCCCCCccEEEeeCCcCCCCC------C-ccCCC
Q psy13911         62 HVAYNAITS----LPDNCISAWSEMEELVLSGNGISSLP----NTIPQSWPHLRVLRLHSNHLTSCP------T-LYLSS  126 (183)
Q Consensus        62 ~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~------~-~~~~~  126 (183)
                      .+..|.+..    ....++..++.|+.||+++|.++.-.    ...+..++.|+.+++++|.+..-.      . -...+
T Consensus       191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p  270 (382)
T KOG1909|consen  191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP  270 (382)
T ss_pred             EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence            999998763    23345788999999999999887211    122336778999999999887532      1 23468


Q ss_pred             cccEEeccCcccccccCCCCC-----CCCccEEEcCCCCc
Q psy13911        127 SLRVLDLSYNHLERLNLNTLI-----PKQLQYLDVSGNPR  161 (183)
Q Consensus       127 ~L~~l~l~~n~l~~~~~~~~~-----~~~l~~l~l~~n~~  161 (183)
                      +|+.+.+.+|.++.-......     .+.+..|++++|.+
T Consensus       271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            999999999988754322211     28999999999988

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.74  E-value=9.7e-08  Score=59.83  Aligned_cols=122  Identities=14%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCc
Q psy13911         50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSS  127 (183)
Q Consensus        50 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~  127 (183)
                      .+|.++.+|+.+.+.. .+..+...+|..+.+++.+.+..+ +..++...+..+.+++.+.+.+ .+..++  .+..++.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3566777788888774 566777777888878888888774 7777777777777888888865 444332  4667788


Q ss_pred             ccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCccee
Q psy13911        128 LRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYV  176 (183)
Q Consensus       128 L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~  176 (183)
                      ++.+.+..+ +..++...+...+++.+.+.. .+..+...+|.+|++|+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccCcc-ccEEchhhhcCCCceEEEECC-CccEECCccccccccCC
Confidence            888888665 777777777667888888875 56777788888888774

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.72  E-value=2.8e-09  Score=73.43  Aligned_cols=159  Identities=23%  Similarity=0.231  Sum_probs=118.3

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC-cc----ccccccccccEEEccCCCCCCC-C--------------CCCCCCCCCEEe
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM-LP----SLNNENRYLEKLYLTSNALTDI-G--------------PLNKCRQLNTLH   62 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~-~~----~~~~~~~~L~~L~l~~~~~~~~-~--------------~~~~l~~L~~l~   62 (183)
                      +.+++..|+.++.++++.|.+.. .|    +.++....|.+|.+++|.+..+ +              -..+-|.|+++.
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            45678899999999999998874 33    5567788999999999998776 1              124568999999


Q ss_pred             eCCccccccCc----ccccCCCCCcEEEecCCcCccC--C----CCCCCCCCCccEEEeeCCcCCCCC------CccCCC
Q psy13911         63 VAYNAITSLPD----NCISAWSEMEELVLSGNGISSL--P----NTIPQSWPHLRVLRLHSNHLTSCP------TLYLSS  126 (183)
Q Consensus        63 l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~l~~~--~----~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~  126 (183)
                      +..|.+...+.    ..+.....++++.+..|.++.-  .    .+.+ .+.+|+.|++.+|.++...      ....|+
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            99998764433    2245557899999999988721  1    1333 6789999999999888542      356667


Q ss_pred             cccEEeccCcccccccCCCCCC-------CCccEEEcCCCCce
Q psy13911        127 SLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNPRL  162 (183)
Q Consensus       127 ~L~~l~l~~n~l~~~~~~~~~~-------~~l~~l~l~~n~~~  162 (183)
                      .|+.|++.+|.++..+...+..       ++|..|-.++|.+.
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            7899999999877655433221       78888888888654

>KOG1859|consensus

Probab=98.71  E-value=6.7e-11  Score=90.87  Aligned_cols=126  Identities=26%  Similarity=0.263  Sum_probs=97.1

Q ss_pred             cccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         35 YLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      +|...++++|.+... .++.-++.++.|+++.|+++++.  .+..++.|++||+++|.++.+|......+ .|+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            456666666666655 55566788999999999998876  48889999999999999998887544244 499999999


Q ss_pred             CcCCCCCCccCCCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCcee
Q psy13911        114 NHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLH  163 (183)
Q Consensus       114 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~  163 (183)
                      |.++.+-.+.++.+|+.||+++|-+.+-..-.+.  ...|+.|++.||++-+
T Consensus       242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9888877778888999999999977654221111  1788889999998765

>KOG1644|consensus

Probab=98.71  E-value=6e-08  Score=64.00  Aligned_cols=123  Identities=25%  Similarity=0.329  Sum_probs=86.8

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS   93 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   93 (183)
                      +.+++.+..+..+...-........+++++|.+.....|..+++|.+|.+..|.|+.+.+..-..++++.+|.+.+|++.
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            34555555555443322223456778888888888888888888999999888888887775556778888888888777


Q ss_pred             cCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCc
Q psy13911         94 SLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYN  136 (183)
Q Consensus        94 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n  136 (183)
                      .+.. .-...++.|+.|.+-+|.++..+.     +..+++++.||++.-
T Consensus       102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  102 ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            5443 222367888888888888776542     566788888887653

>PLN03150 hypothetical protein; Provisional

Probab=98.69  E-value=6.6e-08  Score=75.89  Aligned_cols=106  Identities=26%  Similarity=0.326  Sum_probs=83.6

Q ss_pred             CCEEeeCCccccccCcccccCCCCCcEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEecc
Q psy13911         58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLS  134 (183)
Q Consensus        58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~  134 (183)
                      +..|++.+|.+....+..+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++ +| .++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            677888999888776767889999999999999987 4554544 88999999999999886 45 47888999999999


Q ss_pred             CcccccccCCCCCC--CCccEEEcCCCCceee
Q psy13911        135 YNHLERLNLNTLIP--KQLQYLDVSGNPRLHV  164 (183)
Q Consensus       135 ~n~l~~~~~~~~~~--~~l~~l~l~~n~~~~~  164 (183)
                      +|.+++..+..+..  .++..+++.+|+..+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccC
Confidence            99988655544332  4566888988876654

>KOG4579|consensus

Probab=98.68  E-value=2.2e-10  Score=70.85  Aligned_cols=137  Identities=22%  Similarity=0.290  Sum_probs=99.6

Q ss_pred             cccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911         35 YLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR  110 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~  110 (183)
                      .+..+++++|++..+    ..+.....|..+++++|.++++++.....++.++++++..|.++.+|.... .++.|+.++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A-am~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA-AMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh-hhHHhhhcc
Confidence            345567777776655    234455667788999999999888866677889999999999999998844 889999999


Q ss_pred             eeCCcCCCCCC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCC
Q psy13911        111 LHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY  172 (183)
Q Consensus       111 l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~  172 (183)
                      ++.|.+...|. +..+.++..|+..+|.+..++...+.++..-..++..+++.+-.+..+..+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            99998887663 334678888898899888887775555444444555566665555444433

>KOG1859|consensus

Probab=98.59  E-value=2.6e-10  Score=87.72  Aligned_cols=123  Identities=28%  Similarity=0.334  Sum_probs=91.3

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI   92 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   92 (183)
                      |...++++|.+..+...+.-++.++.|++++|+++...++..++.|++|++++|.+..++.-....+ .|..|++++|.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence            4455667777777777777788889999999988888888888899999999988887765333333 488888888888


Q ss_pred             ccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCccc
Q psy13911         93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHL  138 (183)
Q Consensus        93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l  138 (183)
                      +++.. +- ++.+|+.||++.|.+.+..   .++.+..|+.|.+.+|.+
T Consensus       245 ~tL~g-ie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  245 TTLRG-IE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             Hhhhh-HH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77643 22 6788888888888777643   344555677777777754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.48  E-value=8.2e-07  Score=55.60  Aligned_cols=103  Identities=18%  Similarity=0.370  Sum_probs=43.8

Q ss_pred             HhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      +|..+++|+.+.+.. .+..++ ..|..+.+++.+.+..+ +..+  .+|.++.+++.+.+.. .+..+....+..+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455666666666653 344444 44555555666666543 4443  4455555565555543 3444444445555555


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      +.+.+..+ +..++...+..+ .++.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55555443 444444444343 555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.48  E-value=1.7e-07  Score=47.03  Aligned_cols=38  Identities=34%  Similarity=0.474  Sum_probs=20.6

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI   49 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   49 (183)
                      +|++|++++|.++.+|..+..+++|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45566666666666555455555555555555555443

...

>KOG1644|consensus

Probab=98.45  E-value=5.4e-07  Score=59.59  Aligned_cols=120  Identities=22%  Similarity=0.279  Sum_probs=86.9

Q ss_pred             cEEEccCCCCCCCCCCCC-CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911         37 EKLYLTSNALTDIGPLNK-CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH  115 (183)
Q Consensus        37 ~~L~l~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  115 (183)
                      +.+++.+.++..+..++. ......+++++|.+.....  +..++.|.+|.++.|+++.+.+.+....+++..|.+.+|.
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            455566555555533222 3456778899988876554  7788899999999999998888776667889999999998


Q ss_pred             CCCC---CCccCCCcccEEeccCcccccccCCCC----CCCCccEEEcCC
Q psy13911        116 LTSC---PTLYLSSSLRVLDLSYNHLERLNLNTL----IPKQLQYLDVSG  158 (183)
Q Consensus       116 ~~~~---~~~~~~~~L~~l~l~~n~l~~~~~~~~----~~~~l~~l~l~~  158 (183)
                      +..+   ..+..|++|++|.+-+|.+++....-.    ..++++.||+++
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8754   457788899999998888877542211    118888888764

>KOG2120|consensus

Probab=98.40  E-value=4.8e-09  Score=73.14  Aligned_cols=153  Identities=25%  Similarity=0.271  Sum_probs=90.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCC-CCCC---CCCCCCCCCCEEeeCCccccccCccc--c
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNA-LTDI---GPLNKCRQLNTLHVAYNAITSLPDNC--I   76 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~--~   76 (183)
                      ...++.|++|+.+.+.++.+.+ +...+....+|+.++++.|. ++..   --+.+|+.|..|++++|.+..-...+  -
T Consensus       203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence            3456677777777777777765 44556666777777777664 4433   23567778888888877654211111  1


Q ss_pred             cCCCCCcEEEecCCcCc----cCCCCCCCCCCCccEEEeeCC-cCCC--CCCccCCCcccEEeccCcccccccCCCC---
Q psy13911         77 SAWSEMEELVLSGNGIS----SLPNTIPQSWPHLRVLRLHSN-HLTS--CPTLYLSSSLRVLDLSYNHLERLNLNTL---  146 (183)
Q Consensus        77 ~~~~~L~~l~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~L~~l~l~~n~l~~~~~~~~---  146 (183)
                      .--.+++.|+++|+.-.    .+. .....++++.+||+++| .++.  +..+..++-|+++.++.|..  ++++.+   
T Consensus       283 hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l  359 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL  359 (419)
T ss_pred             hhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee
Confidence            12346777777765211    111 12236788888888887 4443  12356667788888877632  111211   


Q ss_pred             -CCCCccEEEcCCC
Q psy13911        147 -IPKQLQYLDVSGN  159 (183)
Q Consensus       147 -~~~~l~~l~l~~n  159 (183)
                       ..+.+.+|++.++
T Consensus       360 ~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGC  373 (419)
T ss_pred             ccCcceEEEEeccc
Confidence             1277788887665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.40  E-value=3.1e-07  Score=46.05  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=20.8

Q ss_pred             CccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccc
Q psy13911        105 HLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus       105 ~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~  141 (183)
                      +|++|++++|.++.+|. +..+++|+.|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45566666666666554 55666666666666655554

...

>KOG2982|consensus

Probab=98.39  E-value=3.6e-08  Score=68.89  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             hcCCCCcEEEccCCcCCC---ccccccccccccEEEccCCCCCCC-CCC-CCCCCCCEEeeCCcccc
Q psy13911          8 QNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDI-GPL-NKCRQLNTLHVAYNAIT   69 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~l~~L~~l~l~~~~~~   69 (183)
                      ..++.++.+++.+|.++.   +...+.++|.++.|+++.|++... +.+ ....+|+++.+.+..+.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            445556666666666653   334455566666666666665544 333 24455555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=3.4e-07  Score=63.42  Aligned_cols=174  Identities=19%  Similarity=0.218  Sum_probs=102.8

Q ss_pred             HHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------------CCCCCCCCCCEEeeCCcc
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------------GPLNKCRQLNTLHVAYNA   67 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~l~~L~~l~l~~~~   67 (183)
                      ..+..+..+..+++++|.+..     +...+.+-.+|+...++.--....            .++..|++|+.+++++|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            445567788889999998874     223344455666666664322221            346678888888888887


Q ss_pred             ccccCcc----cccCCCCCcEEEecCCcCccCCC--------------CCCCCCCCccEEEeeCCcCCCCC------Ccc
Q psy13911         68 ITSLPDN----CISAWSEMEELVLSGNGISSLPN--------------TIPQSWPHLRVLRLHSNHLTSCP------TLY  123 (183)
Q Consensus        68 ~~~~~~~----~~~~~~~L~~l~l~~~~l~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~~------~~~  123 (183)
                      +....+.    .+.....+.+|.+.+|++..+..              .+. .-+.|+.+...+|++...+      .+.
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa-~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAA-DKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhc-cCCCceEEEeccchhccCcHHHHHHHHH
Confidence            7632221    14455678888888887663321              111 3467788888888776543      133


Q ss_pred             CCCcccEEeccCcccccccCCCC------CCCCccEEEcCCCCceeeC----CCCcCCCcceeEEE
Q psy13911        124 LSSSLRVLDLSYNHLERLNLNTL------IPKQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVY  179 (183)
Q Consensus       124 ~~~~L~~l~l~~n~l~~~~~~~~------~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~  179 (183)
                      ....++.+.+..|.|...+...+      ...+|+.||++.|.++...    ..++..|+.|..|.
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            33467777777777665432221      1167777888777765432    23445555555444

>KOG2982|consensus

Probab=98.19  E-value=1.2e-06  Score=61.42  Aligned_cols=160  Identities=24%  Similarity=0.261  Sum_probs=104.5

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccc-cccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccc--cCcccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITS--LPDNCI   76 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~--~~~~~~   76 (183)
                      +...+.++|.++.|+++.|.+...-..+ ....+|+.|.+.+..+...   ..+..++.++.+.++.|....  ..+...
T Consensus        89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~  168 (418)
T KOG2982|consen   89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI  168 (418)
T ss_pred             HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence            4456789999999999999988633333 4677899999999887776   456778899999998886542  223333


Q ss_pred             cCCC-CCcEEEecCCcCc---cCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCC-CCC
Q psy13911         77 SAWS-EMEELVLSGNGIS---SLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNT-LIP  148 (183)
Q Consensus        77 ~~~~-~L~~l~l~~~~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~-~~~  148 (183)
                      ..++ .++++...+|...   ..-. ....++++..+.+..|.+++..   .....+.+.-|+++.|.|.++.... +..
T Consensus       169 e~~s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~  247 (418)
T KOG2982|consen  169 EDWSTEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNG  247 (418)
T ss_pred             cccchhhhhhhcCCcHHHHHHHHHh-HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcC
Confidence            3333 5677777666443   1111 1124577777788888776542   2444455667777777777764322 111


Q ss_pred             -CCccEEEcCCCCcee
Q psy13911        149 -KQLQYLDVSGNPRLH  163 (183)
Q Consensus       149 -~~l~~l~l~~n~~~~  163 (183)
                       +.+..|.+.+|++.+
T Consensus       248 f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  248 FPQLVDLRVSENPLSD  263 (418)
T ss_pred             CchhheeeccCCcccc
Confidence             677777777777644

>KOG2120|consensus

Probab=98.13  E-value=2.2e-08  Score=69.95  Aligned_cols=168  Identities=23%  Similarity=0.228  Sum_probs=107.9

Q ss_pred             CCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc-cccccCc-ccccCCCCCcEE
Q psy13911         12 KLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN-AITSLPD-NCISAWSEMEEL   85 (183)
Q Consensus        12 ~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~-~~~~~~~-~~~~~~~~L~~l   85 (183)
                      .++++|++...++.  +...++.+.+|+.|.+.++++...  ..++.-..|+.++++.+ +++.... -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47778888777764  446677888888888888887765  45666678888888764 4443221 225677888888


Q ss_pred             EecCCcCc--cCCCCCCCCCCCccEEEeeCCc--C--CCCCC-ccCCCcccEEeccCc-ccccccCCCCCC-CCccEEEc
Q psy13911         86 VLSGNGIS--SLPNTIPQSWPHLRVLRLHSNH--L--TSCPT-LYLSSSLRVLDLSYN-HLERLNLNTLIP-KQLQYLDV  156 (183)
Q Consensus        86 ~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~--~--~~~~~-~~~~~~L~~l~l~~n-~l~~~~~~~~~~-~~l~~l~l  156 (183)
                      +++-|.+.  .+...+..-..++..|+++++.  +  ..+.. ...|+.+..||+++| .+++--..++.. +.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88877554  1211222234667777777752  1  11221 567789999999987 444421122222 78889998


Q ss_pred             CCCCceeeCCC---CcCCCcceeEEEEE
Q psy13911        157 SGNPRLHVDPN---HFKSYRSYVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~~~---~~~~~~~l~~l~l~  181 (183)
                      +.|  -+++|+   .+...+.|..|++.
T Consensus       346 sRC--Y~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  346 SRC--YDIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhh--cCCChHHeeeeccCcceEEEEec
Confidence            877  445554   45778888888764

>KOG4658|consensus

Probab=98.12  E-value=1.9e-06  Score=69.91  Aligned_cols=125  Identities=23%  Similarity=0.297  Sum_probs=83.9

Q ss_pred             ccccEEEccCCCCCCCCCCCCCCCCCEEeeCCcc--ccccCcccccCCCCCcEEEecCC-cCccCCCCCCCCCCCccEEE
Q psy13911         34 RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA--ITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLR  110 (183)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~~~~~L~~L~  110 (183)
                      ...+.+.+-++.+.....-..++.|.+|-+.+|.  +...+...|..++.|+.||+++| .+..+|..+. .+.+|+.|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhccc
Confidence            4566666666666665333445577777777764  56666666777888888888866 5567777775 777888888


Q ss_pred             eeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCC-CCCccEEEcCCC
Q psy13911        111 LHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLI-PKQLQYLDVSGN  159 (183)
Q Consensus       111 l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~l~~l~l~~n  159 (183)
                      ++++.++.+| .+.++..|.+|++..+......+.... ..+|++|.+...
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            8888888777 477777888888876644333333333 277777776544

>KOG4658|consensus

Probab=98.09  E-value=1.9e-06  Score=69.91  Aligned_cols=84  Identities=23%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             HhhcCCCCcEEEccCC-cCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911          6 FLQNSSKLKVLNISKN-CLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME   83 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~   83 (183)
                      +|..++.|+.||+++| .+..+|..++.+-+|+.|+++++.+... ..+.++..|.+|++..+......+.....+.+|+
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            3555555555555544 3344555555555555555555555544 3445555555555554433323333333355555


Q ss_pred             EEEecC
Q psy13911         84 ELVLSG   89 (183)
Q Consensus        84 ~l~l~~   89 (183)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            555443

>KOG3665|consensus

Probab=98.09  E-value=1.6e-06  Score=68.58  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=72.4

Q ss_pred             CCCcEEEccCCcCCC--cc-ccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911         11 SKLKVLNISKNCLKM--LP-SLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~--~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      .+|++|++++.....  .+ ....-+|.|++|.+.+..+...   ....++++|..||+++++++.+  ..++.+.+|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            356666666653331  12 2223467777777776554433   3344567777777777777665  33666777777


Q ss_pred             EEecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCC--------CccCCCcccEEeccCccccc
Q psy13911         85 LVLSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCP--------TLYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        85 l~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~L~~l~l~~n~l~~  140 (183)
                      |.+.+-.+....  ..++ .+++|+.||+++......+        .-..++.|+.||.++..+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            766665444322  1344 6777777777776443322        12335677777777655443

>KOG4579|consensus

Probab=97.97  E-value=1.3e-07  Score=58.90  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=79.4

Q ss_pred             CCEEeeCCccccccCcc--cccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEecc
Q psy13911         58 LNTLHVAYNAITSLPDN--CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLS  134 (183)
Q Consensus        58 L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~  134 (183)
                      +..+++++|.+-.+...  -+.....|+.+++++|.+..+|..+-..++.++.+++++|.+..+| .+..++.|+.++++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            34566677765533321  1334456777899999999999877666778999999999999988 47778899999999


Q ss_pred             CcccccccCCCCCCCCccEEEcCCCCceeeCCC
Q psy13911        135 YNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus       135 ~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  167 (183)
                      .|.+...+-......++..|+..+|.+..++-+
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            998877654333336677778888877666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=0.00035  Score=52.04  Aligned_cols=136  Identities=21%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCC-CCCCCCCCCCCCCCEEeeCCc-cccccCcccccCCCCCcE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVAYN-AITSLPDNCISAWSEMEE   84 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~   84 (183)
                      +..+..++.|++++|.+..+|.   -.++|+.|.+++|. +...+.. -..+|+.|.+.+| .+..++       .+|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP-------~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP-------ESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc-------cccce
Confidence            4567889999999998888873   24568888888754 4333221 1357888888877 444332       35777


Q ss_pred             EEecCCcCccCCCCCCCCCCCccEEEeeCCc-C--CCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911         85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-L--TSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus        85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      |++.++....++.    -..+|+.|.+.++. .  ...+. .-.++|++|.+++|.....+.  ..+.+++.|+++.+.
T Consensus       117 L~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ls~n~  188 (426)
T PRK15386        117 LEIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPE--KLPESLQSITLHIEQ  188 (426)
T ss_pred             EEeCCCCCccccc----CcchHhheecccccccccccccc-ccCCcccEEEecCCCcccCcc--cccccCcEEEecccc
Confidence            7777655433321    23456677765432 1  11121 122589999998887554332  234789999987763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00045  Score=51.45  Aligned_cols=110  Identities=21%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             CCcEEEccCC-cCCCccccccccccccEEEccCC-CCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         12 KLKVLNISKN-CLKMLPSLNNENRYLEKLYLTSN-ALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        12 ~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      +|+.|.+.++ .+..+|..+  .++|+.|.+++| .+..+     ...|+.|.+..+....+..    -.++|+.|.+.+
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~----LPssLk~L~I~~  141 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKN----VPNGLTSLSINS  141 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCccccc----CcchHhheeccc
Confidence            6899999875 566677554  368999999988 45433     2357777776654432211    123466666643


Q ss_pred             CcCc---cCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCc
Q psy13911         90 NGIS---SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYN  136 (183)
Q Consensus        90 ~~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n  136 (183)
                      +...   .++. .  -.++|+.|++++|.....|. .-..+|+.|.++.+
T Consensus       142 ~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n  187 (426)
T PRK15386        142 YNPENQARIDN-L--ISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE  187 (426)
T ss_pred             ccccccccccc-c--cCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence            2211   1111 1  23677888887776544432 11247777777655

>KOG3665|consensus

Probab=97.75  E-value=2.6e-05  Score=61.95  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             HHhhcCCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccC-cccccCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP-DNCISAWSE   81 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~   81 (183)
                      ..-..+|.|+.|.+.+-.+..  +-....++++|..||+|++.++....++++++|+.|.+.+-.+.... -..+..+++
T Consensus       142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            344679999999999876654  44667789999999999999999877888999999887765554311 112567899


Q ss_pred             CcEEEecCCcCccCCC------CCCCCCCCccEEEeeCCcCCC
Q psy13911         82 MEELVLSGNGISSLPN------TIPQSWPHLRVLRLHSNHLTS  118 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~------~~~~~~~~L~~L~l~~~~~~~  118 (183)
                      |+.||++.......+.      .....+++|+.||.+++.+..
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            9999999864442221      122257899999999877654

>KOG2123|consensus

Probab=97.73  E-value=3.2e-07  Score=63.67  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC--CCccEEEcCC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSG  158 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~--~~l~~l~l~~  158 (183)
                      +.+.|++.+|++..+..  ...++.|+.|.++-|+|+++..+..|+.|++|.|..|.|.++..-....  ++|+.|++..
T Consensus        20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            44555566665554422  2245666666666666666666666666666666666665553222111  6666666666


Q ss_pred             CCceee
Q psy13911        159 NPRLHV  164 (183)
Q Consensus       159 n~~~~~  164 (183)
                      |+-.+.
T Consensus        98 NPCc~~  103 (388)
T KOG2123|consen   98 NPCCGE  103 (388)
T ss_pred             CCcccc
Confidence            665443

>KOG2123|consensus

Probab=97.65  E-value=5.1e-07  Score=62.71  Aligned_cols=82  Identities=30%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             cccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCC-CCCCCCCCccEEEe
Q psy13911         33 NRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRL  111 (183)
Q Consensus        33 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l  111 (183)
                      +.+++.|++.+|.+..+.-...++.|+.|.++-|.++.+.+  +..|.+|++|++..|.+..+.. ....++++|+.|++
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            44566677777777776555567778888888888877665  7778888888888887776554 22237788888888


Q ss_pred             eCCcC
Q psy13911        112 HSNHL  116 (183)
Q Consensus       112 ~~~~~  116 (183)
                      ..|.=
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            87743

>KOG2739|consensus

Probab=97.56  E-value=4.1e-05  Score=52.70  Aligned_cols=106  Identities=27%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCcccc---ccCcccccCCCCCcEEEecCCcCccCCC-CCCC
Q psy13911         26 LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT---SLPDNCISAWSEMEELVLSGNGISSLPN-TIPQ  101 (183)
Q Consensus        26 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~  101 (183)
                      +......+..++.+.+.+..++....+..+++|+.|.++.|...   .+... ...+++++++++++|.+..+.. ....
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhh
Confidence            33444445666677777777777777777888888888887333   22222 3445888888888887763211 1112


Q ss_pred             CCCCccEEEeeCCcCCCCC-----CccCCCcccEEe
Q psy13911        102 SWPHLRVLRLHSNHLTSCP-----TLYLSSSLRVLD  132 (183)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~l~  132 (183)
                      .+.+|..|++.+|..+...     .+.-+++|++++
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            5667777888887766542     244455666654

>KOG2739|consensus

Probab=96.76  E-value=0.00075  Score=46.68  Aligned_cols=99  Identities=24%  Similarity=0.305  Sum_probs=62.7

Q ss_pred             CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC--cCCC-CC-CccCCCcccEEeccCcccccccCCCCCC--CCcc
Q psy13911         79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN--HLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQ  152 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~--~~l~  152 (183)
                      +..++.+.+.+..++++....  .+++|++|.++.|  .+.+ ++ ....+++|++++++.|+++.+....-..  .+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecccCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            344555555565665554332  5789999999999  4442 22 3455589999999999888743222111  7788


Q ss_pred             EEEcCCCCceeeCC---CCcCCCcceeEEE
Q psy13911        153 YLDVSGNPRLHVDP---NHFKSYRSYVRVY  179 (183)
Q Consensus       153 ~l~l~~n~~~~~~~---~~~~~~~~l~~l~  179 (183)
                      .|++..|..+....   ..|.-+++|+.++
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            89998887765432   2455566665554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.65  E-value=0.0013  Score=27.50  Aligned_cols=20  Identities=40%  Similarity=0.728  Sum_probs=11.2

Q ss_pred             ccEEEcCCCCceeeCCCCcCC
Q psy13911        151 LQYLDVSGNPRLHVDPNHFKS  171 (183)
Q Consensus       151 l~~l~l~~n~~~~~~~~~~~~  171 (183)
                      |++|++++|.++.+++. |.+
T Consensus         2 L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TTT
T ss_pred             ccEEECCCCcCEeCChh-hcC
Confidence            55666666666655433 443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.73  E-value=0.0089  Score=23.16  Aligned_cols=15  Identities=40%  Similarity=0.618  Sum_probs=6.6

Q ss_pred             CCcEEEccCCcCCCc
Q psy13911         12 KLKVLNISKNCLKML   26 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~   26 (183)
                      +|+.|++++|.+..+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455566665555543

...

>KOG4341|consensus

Probab=95.55  E-value=0.00086  Score=49.55  Aligned_cols=175  Identities=26%  Similarity=0.248  Sum_probs=101.7

Q ss_pred             HhhcCCCCcEEEccCC-cCCC--ccccccccccccEEEccCCC---------------------------CCCC---CCC
Q psy13911          6 FLQNSSKLKVLNISKN-CLKM--LPSLNNENRYLEKLYLTSNA---------------------------LTDI---GPL   52 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~---------------------------~~~~---~~~   52 (183)
                      .-..|++|++++++++ .+.+  +...+.+...++.+...+|.                           ++..   ..-
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            3457888999999887 3433  33444445444444444332                           1111   011


Q ss_pred             CCCCCCCEEeeCCcc-ccccCc-ccccCCCCCcEEEecCCc-CccCCCC-CCCCCCCccEEEeeCCcCCC---CC-CccC
Q psy13911         53 NKCRQLNTLHVAYNA-ITSLPD-NCISAWSEMEELVLSGNG-ISSLPNT-IPQSWPHLRVLRLHSNHLTS---CP-TLYL  124 (183)
Q Consensus        53 ~~l~~L~~l~l~~~~-~~~~~~-~~~~~~~~L~~l~l~~~~-l~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~-~~~~  124 (183)
                      ..+..|+.+..+++. +++.+- ..-..+.+|+.+.+.+++ ++..... +.++++.|+.+++.++....   +. ...+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            234556666665532 222221 112446788888888874 3322211 12367888888888874332   21 3567


Q ss_pred             CCcccEEeccCcc-cccccCCCCC-----CCCccEEEcCCCCc-eeeCCCCcCCCcceeEEEE
Q psy13911        125 SSSLRVLDLSYNH-LERLNLNTLI-----PKQLQYLDVSGNPR-LHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       125 ~~~L~~l~l~~n~-l~~~~~~~~~-----~~~l~~l~l~~n~~-~~~~~~~~~~~~~l~~l~l  180 (183)
                      ++.++.+.++++. +++.+...+.     ...+..+.+++++. ++.....+..|++|+++++
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL  433 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence            7899999999873 4444222222     26788889998874 5555678888999988654

>KOG3864|consensus

Probab=95.02  E-value=0.00072  Score=45.15  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             CccEEEeeCCcCCCC--CCccCCCcccEEeccCc-ccccccCCCCCC--CCccEEEcCCCC-ceeeCCCCcCCCcceeEE
Q psy13911        105 HLRVLRLHSNHLTSC--PTLYLSSSLRVLDLSYN-HLERLNLNTLIP--KQLQYLDVSGNP-RLHVDPNHFKSYRSYVRV  178 (183)
Q Consensus       105 ~L~~L~l~~~~~~~~--~~~~~~~~L~~l~l~~n-~l~~~~~~~~~~--~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l  178 (183)
                      .++.++.+++.|...  ..+..++.++.+.+.+| ++.++...-+..  ++|+.|++++|+ |++....++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777666543  34666666777666655 344443322222  777777777775 565555566666666655


Q ss_pred             EE
Q psy13911        179 YI  180 (183)
Q Consensus       179 ~l  180 (183)
                      .+
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            44

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.39  E-value=0.039  Score=23.80  Aligned_cols=17  Identities=35%  Similarity=0.624  Sum_probs=7.5

Q ss_pred             CCCEEeeCCccccccCc
Q psy13911         57 QLNTLHVAYNAITSLPD   73 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~   73 (183)
                      +|+.|++.+|.+..+++
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.39  E-value=0.039  Score=23.80  Aligned_cols=17  Identities=35%  Similarity=0.624  Sum_probs=7.5

Q ss_pred             CCCEEeeCCccccccCc
Q psy13911         57 QLNTLHVAYNAITSLPD   73 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~   73 (183)
                      +|+.|++.+|.+..+++
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>KOG4308|consensus

Probab=93.49  E-value=0.00015  Score=55.41  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=9.9

Q ss_pred             HHhhcCCCCcEEEccCCcCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLK   24 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~   24 (183)
                      .++.....|..+++++|.+.
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHhcccccHhHhhcccCCCc
Confidence            34444455555555555444

>KOG1947|consensus

Probab=91.00  E-value=0.057  Score=41.38  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=15.9

Q ss_pred             cCCCCcEEEccCC-cCCC--ccccccccccccEEEccC
Q psy13911          9 NSSKLKVLNISKN-CLKM--LPSLNNENRYLEKLYLTS   43 (183)
Q Consensus         9 ~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~   43 (183)
                      .++.++.+.+..+ .+..  +......++.|+.+++++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            3455555555444 2222  223334455555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.21  E-value=0.2  Score=21.02  Aligned_cols=14  Identities=43%  Similarity=0.624  Sum_probs=5.9

Q ss_pred             cccEEeccCccccc
Q psy13911        127 SLRVLDLSYNHLER  140 (183)
Q Consensus       127 ~L~~l~l~~n~l~~  140 (183)
                      +|+.|++++|.+++
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            44555555554443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.76  E-value=0.55  Score=20.37  Aligned_cols=14  Identities=29%  Similarity=0.449  Sum_probs=6.7

Q ss_pred             CccEEEeeCCcCCC
Q psy13911        105 HLRVLRLHSNHLTS  118 (183)
Q Consensus       105 ~L~~L~l~~~~~~~  118 (183)
                      +|+.|+++.|+|+.
T Consensus         3 ~L~~L~L~~NkI~~   16 (26)
T smart00365        3 NLEELDLSQNKIKK   16 (26)
T ss_pred             ccCEEECCCCccce
Confidence            44455555554443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.82  E-value=0.66  Score=20.15  Aligned_cols=18  Identities=50%  Similarity=0.660  Sum_probs=12.6

Q ss_pred             CCCcEEEccCCcCCCccc
Q psy13911         11 SKLKVLNISKNCLKMLPS   28 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~   28 (183)
                      +.|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356777777777777664

>KOG3864|consensus

Probab=85.63  E-value=0.053  Score=36.54  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=37.7

Q ss_pred             CCEEeeCCccccccCcccccCCCCCcEEEecCCcC-c--cCCCCCCCCCCCccEEEeeCC-cCCCC--CCccCCCcccEE
Q psy13911         58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI-S--SLPNTIPQSWPHLRVLRLHSN-HLTSC--PTLYLSSSLRVL  131 (183)
Q Consensus        58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l-~--~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~L~~l  131 (183)
                      ++.++-+++.+....-.-+..+.+++.+.+.+|.- .  .+. .+.+..++|+.|++++| +|++-  ..+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34455555444433333344555555555554421 1  010 11113467777788777 66653  235555666666


Q ss_pred             ecc
Q psy13911        132 DLS  134 (183)
Q Consensus       132 ~l~  134 (183)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            654

>KOG3763|consensus

Probab=84.29  E-value=0.51  Score=36.80  Aligned_cols=61  Identities=30%  Similarity=0.413  Sum_probs=37.2

Q ss_pred             CCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCc--ccccc-cCCCCCCCCccEEEcCCCCce
Q psy13911        102 SWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYN--HLERL-NLNTLIPKQLQYLDVSGNPRL  162 (183)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n--~l~~~-~~~~~~~~~l~~l~l~~n~~~  162 (183)
                      +.+.+..+.+++|++..+..    ....+++..|+|++|  .+... ....+....+++|.+.||++.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence            45667777788887776543    233467888888887  33322 111222266777888888764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.06  E-value=0.82  Score=20.07  Aligned_cols=14  Identities=64%  Similarity=0.710  Sum_probs=7.8

Q ss_pred             cccEEeccCccccc
Q psy13911        127 SLRVLDLSYNHLER  140 (183)
Q Consensus       127 ~L~~l~l~~n~l~~  140 (183)
                      +|++|++++|.+++
T Consensus         3 ~L~~LdL~~N~i~~   16 (28)
T smart00368        3 SLRELDLSNNKLGD   16 (28)
T ss_pred             ccCEEECCCCCCCH
Confidence            45556666655544

>KOG1947|consensus

Probab=81.85  E-value=1  Score=34.52  Aligned_cols=90  Identities=26%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             HHHHhhcCCCCcEEEccCC--cCCCc----cccccccccccEEEccCCC-CCCC--CCCC-CCCCCCEEeeCCcc-cccc
Q psy13911          3 LELFLQNSSKLKVLNISKN--CLKML----PSLNNENRYLEKLYLTSNA-LTDI--GPLN-KCRQLNTLHVAYNA-ITSL   71 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~--~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~--~~~~-~l~~L~~l~l~~~~-~~~~   71 (183)
                      +......++.|+.++++++  .....    ......+.+++.++++++. ++..  ..+. .+++|+.|.+.++. +++.
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~  285 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE  285 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence            4566778899999999873  22211    1234456788888888877 5555  2322 37788888866665 4422


Q ss_pred             C-cccccCCCCCcEEEecCCcC
Q psy13911         72 P-DNCISAWSEMEELVLSGNGI   92 (183)
Q Consensus        72 ~-~~~~~~~~~L~~l~l~~~~l   92 (183)
                      . ......++.|+++++.++..
T Consensus       286 gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  286 GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHHHHhcCcccEEeeecCcc
Confidence            2 22245567788888887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		1e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-07
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		3e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		6e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		8e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-04
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-04

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 16  LNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLP 72
           L++  N LK LP  + +E   L +LYL  N L  +  G  NK   L  L+++ N + SLP
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 73  DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           +      ++++EL L+ N + SLP+ +      L+ LRL+ N L S P
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           LQNSS LK++++  N LK LP L      LE +   +N L ++  L     L  ++   N
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSWPHLRV 108
           ++  LPD  +S    +E +V   N +  LP                   T+P   P L  
Sbjct: 206 SLKKLPDLPLS----LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           L +  N+LT  P   L  SL  LD+S N    L   + +P  L YL+ S N
Sbjct: 262 LNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL---SELPPNLYYLNASSN 307

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
           +++  + N+S +K    S   ++ LP++    RYL    L  N L DI  L +   L  L
Sbjct: 42  SIDQIIANNSDIK----SVQGIQYLPNV----RYLA---LGGNKLHDISALKELTNLTYL 90
Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
            +  N + SLP+      + ++ELVL  N + SLP+ +     +L  L L  N L S P 
Sbjct: 91  ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 122 LYLS--SSLRVLDLSYNHLERL 141
                 ++L  LDLSYN L+ L
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSL 172

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYN 66
           S+  ++LN+ +N ++++   + ++ R+LE L L+ N +   +IG  N    LNTL +  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
            +T++P+      S+++EL L  N I S+P+      P LR L L      S    Y+S 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----YISE 178
Query: 126 ------SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
                 S+LR L+L+  +L  + NL  LI  +L  LD+SGN    + P  F+ 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLI--KLDELDLSGNHLSAIRPGSFQG 229

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 11  SKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNA 67
           +KL++L ++ N L+ LP+ +  E + LE L++T N L    IG  ++   L  L +  N 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
           + SLP     + +++  L L  N + SLP  +      L+ LRL++N L   P       
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 126 SSLRVLDLSYNHLERL 141
           + L+ L L  N L+R+
Sbjct: 181 TELKTLKLDNNQLKRV 196

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 50  GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
           G  +   +L TL +A N + SLP       +++++L L GN + SLP+ +      L+ L
Sbjct: 77  GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 110 RLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
           RL++N L S P       ++L+ L LS N L+ +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 50  GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
           G  +   +L TL +A N + SLP       +++++L L GN + SLP+ +      L+ L
Sbjct: 77  GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 110 RLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
           RL++N L S P       ++L+ L LS N L+ +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 14  KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNAITS 70
           + LN+ +N ++++ +   ++ R+LE L L+ N +   ++G  N    LNTL +  N +T+
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS--- 127
           +P       S++ EL L  N I S+P+      P LR  RL    L      Y+S +   
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR--RLDLGELKRLE--YISEAAFE 153
Query: 128 ----LRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
               LR L+L   +L+ + NL  L+  +L+ L++SGN    + P  F+   S  ++++
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALV--RLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
           +++  + N+S +K    S   ++ LP++    RYL    L  N L DI  L +   L  L
Sbjct: 42  SIDQIIANNSDIK----SVQGIQYLPNV----RYLA---LGGNKLHDISALKELTNLTYL 90
Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
            +  N + SLP+      + ++ELVL  N + SLP+ +     +L  L L+ N L S P 
Sbjct: 91  ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 122 LYLS--SSLRVLDLSYNHLERL 141
                 ++L  LDL  N L+ L
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSL 172

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 14  KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNAITS 70
           + LN+ +N ++++ +   ++ R+LE L L+ N +   ++G  N    LNTL +  N +T+
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS--- 127
           +P       S++ EL L  N I S+P+      P LR  RL    L      Y+S +   
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR--RLDLGELKRLE--YISEAAFE 153
Query: 128 ----LRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
               LR L+L   +L+ + NL  L+  +L+ L++SGN    + P  F+   S  ++++
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALV--RLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
           +L L ++++L+V++         P+      +L  L+L    L ++GP        L  L
Sbjct: 83  QLDLSDNAQLRVVD---------PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC-P 120
           ++  N + +LPDN       +  L L GN I S+P    +    L  L LH NH+    P
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 121 TLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
             +     L  L L  N+L  L    L+P + LQYL ++ NP
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNP 235

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 209

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L V++N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             P   L+   +L  L L  N L  +         L +  + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 11  SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNA 67
           S  + LN+ +N ++M+ +    +  +LE L L  N++   ++G  N    LNTL +  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS 127
           +T +P       S++ EL L  N I S+P+      P L  +RL    L     +   + 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL--MRLDLGELKKLEYISEGAF 192
Query: 128 LRVLDLSYNHLERLNLN---TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
             + +L Y +L   N+     L P   L+ L++SGN    + P  F    S  ++++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
           L  L+L    L ++GP        L  L++  NA+ +LPD+       +  L L GN IS
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQ 150
           S+P    +    L  L LH N +    P  +     L  L L  N+L  L    L P + 
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 151 LQYLDVSGNP 160
           LQYL ++ NP
Sbjct: 226 LQYLRLNDNP 235

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
           L  L+L    L ++GP        L  L++  NA+ +LPD+       +  L L GN IS
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQ 150
           S+P    +    L  L LH N +    P  +     L  L L  N+L  L    L P + 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 151 LQYLDVSGNP 160
           LQYL ++ NP
Sbjct: 227 LQYLRLNDNP 236

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           S L+ L++S N L  LP+L +E   L KL+  +N LT +  L     L  L V+ N +TS
Sbjct: 181 SGLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSLPALPSG--LKELIVSGNRLTS 235
Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSL 128
           LP       SE++EL++SGN ++SLP  +P     L  L ++ N LT  P   ++LSS  
Sbjct: 236 LP----VLPSELKELMVSGNRLTSLP-MLPSG---LLSLSVYRNQLTRLPESLIHLSSET 287
Query: 129 RVLDLSYNHLERLNLNTL 146
            V +L  N L    L  L
Sbjct: 288 TV-NLEGNPLSERTLQAL 304

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 38  KLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
           +L L SN L  +  G  +K  QL  L ++ N I SLPD      +++  L L  N + SL
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCP 120
           PN +      L+ L L +N L S P
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVP 116

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 14  KVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIG--PLNKCRQLNTLHVAYNAITS 70
           K++    + ++ LP+ L +  R +E L L    + +I          +  L++ +NAI  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSL 128
           LP +       +  LVL  N +SSLP  I  + P L  L + +N+L      T   ++SL
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 129 RVLDLSYNHLERLNLNTLIP 148
           + L LS N L  ++L +LIP
Sbjct: 168 QNLQLSSNRLTHVDL-SLIP 186

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 14  KVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIG--PLNKCRQLNTLHVAYNAITS 70
           K++    + ++ LP+ L +  R +E L L    + +I          +  L++ +NAI  
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSL 128
           LP +       +  LVL  N +SSLP  I  + P L  L + +N+L      T   ++SL
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 129 RVLDLSYNHLERLNLNTLIP 148
           + L LS N L  ++L +LIP
Sbjct: 174 QNLQLSSNRLTHVDL-SLIP 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-16
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 4e-22
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L     ++ L+ S N + ++    N    L  L L  N LTD   L     L  + ++YN
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLS 125
            +  +  +       +E L +S N + +L     Q  P L+VL L  NHL          
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
             L  L L +N +  L L+T     L+ L +S N 
Sbjct: 318 DRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L   N+S N L  L         +E+L  + N++  +       +L  L + +N +T 
Sbjct: 186 PSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVV-RGPVNVELTILKLQHNNLTD 240

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLR 129
                +  +  + E+ LS N +  +          L  L + +N L +         +L+
Sbjct: 241 TAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298

Query: 130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
           VLDLS+NHL  +  N     +L+ L +  N  + +  +   +
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 8e-17
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 6/171 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
           LQ       ++I      +     +      + +   ++ +  +    L+  RQ+  L++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
               I  +     +    +++L +  N I  LP  + Q+ P L VL L  N L+S P   
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
                 L  L +S N+LER+  +T      LQ L +S N   HVD +   S
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
              +  ++ L +  N ++ LP  +      L  L L  N L+ +  G  +   +L TL +
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
           + N +  + D+   A + ++ L LS N ++ +  ++  S   L    +  N L++     
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAIP- 204

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
              ++  LD S+N +  +        +L  L +  N
Sbjct: 205 --IAVEELDASHNSINVVRGPVN--VELTILKLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI-GPLNKCRQLNTLHVA 64
           L N   L  +++S N L+ +        + LE+LY+++N L  +         L  L ++
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
           +N +  +  N    +  +E L L  N I +L      +   L+ L L  N         L
Sbjct: 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 359

Query: 125 SSSLRVLDLSYN 136
             ++    +   
Sbjct: 360 FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
           AL L+ Q    LKVL++S N L  +     +   LE LYL  N++  +  L+    L  L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNL 344

Query: 62  HVAYNAITSLPDNCISAW 79
            +++N       N + A 
Sbjct: 345 TLSHNDWDC---NSLRAL 359

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNN--ENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
                K+++  +  N L+  P+  +  +   L  L    N +  +       +L  L + 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD 603

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLY 123
           YN I  +P++  +   ++E L  S N +  +PN    +S   +  +    N + S     
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 124 LSS-------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
             S       +   + LSYN +++           +  + +S N
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
              LQ   KL +L+   N ++ L +    N  L  L L  N + +I         Q+  L
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 62  HVAYNAITSLPDNC-ISAWSEMEELVLSGNGISSLPNTIPQSWP-----HLRVLRLHSNH 115
             ++N +  +P+     +   M  +  S N I S    I  S       +   + L  N 
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684

Query: 116 LTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP--------KQLQYLDVSGN 159
           +   P       S +  + LS N +  +  N+L P          L  +D+  N
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 7e-19
 Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 49/213 (23%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRY------LEKLYLTSNALTDIGP--LNKC 55
               ++   +  ++ S N +       + +           + L+ N +           
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 56  RQLNTLHVAYNAITSLPDN-------CISAWSEMEELVLSGNGISSLPNTIP-QSWPHLR 107
             ++T+ ++ N +TS+P+N              +  + L  N ++SL +     + P+L 
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 108 VLRLHSNHLTSCPT----------LYLS---------------------SSLRVLDLSYN 136
            + +  N  +S PT            +                       SL  L +  N
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 137 HLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
            + +++       QL  LD++ NP + +D    
Sbjct: 817 DIRKVDEKLT--PQLYILDIADNPNISIDVTSV 847

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.7 bits (199), Expect = 2e-18
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRY----------LEKLYLTSNALTDIGP---LN 53
           L +  +L+ LNI+ N       L  +             ++  Y+  N L +      L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 54  KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
           K  +L  L   +N +  L         ++ +L L  N I  +P         +  L    
Sbjct: 571 KMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 114 NHLTSCPTLYLSSS---LRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGN 159
           N L   P ++ + S   +  +D SYN +         +++         + +S N
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 2e-17
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDIGP-------LNKCR 56
           F   + +++ L  S N LK +P++ N      +  +  + N +   G          K  
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 57  QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ-------SWPHLRVL 109
             +T+ ++YN I   P    +  S +  ++LS N ++S+P    +       +   L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 110 RLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
            L  N LTS            L  +D+SYN         L   QL+   +       
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 8e-16
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 22/177 (12%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNEN--------RYLEKLYLTSNALTDIGP---LNK 54
                S +  + +S N +  +P  + +           L  + L  N LT +        
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSW---PHLRV 108
              L+ + V+YN  +S P       S+++   +     +         P      P L  
Sbjct: 752 LPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK---QLQYLDVSGNPRL 162
           L++ SN +       L+  L +LD++ N    +++ ++ P     +  L       +
Sbjct: 811 LQIGSNDIRKVDE-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 19/167 (11%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
           +Q  +KL+++  + +       +++ E+   +      N       L     +   +   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--C 501

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ---------SWPHLRVLRLHSNHL 116
             +T LPD  +    E++ L ++ N   S                + P +++  +  N+L
Sbjct: 502 PNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 117 TSCP---TLYLSSSLRVLDLSYNHLERLN-LNTLIPKQLQYLDVSGN 159
              P   +L     L +LD  +N +  L    T    +L  L +  N
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN--VKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 23/139 (16%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
           +        L  +++S NC    P+    +  L+   +                      
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ----------------RDA 789

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL- 122
             N I       I+    + +L +  N I  +   +    P L +L +  N   S     
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTS 846

Query: 123 ---YLSSSLRVLDLSYNHL 138
              Y+ + + VL       
Sbjct: 847 VCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 30/194 (15%)

Query: 6   FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
            L N+ ++  L+++    K  +P    +   L+ L   +++ T  G L    +L      
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 65  ---YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP---QSWPHLRVLRL--HSNHL 116
              +          +     +    L  + I+  P   P    S   L+  ++   +N +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 117 TSCP-TLYLSSSLRVLDLSYNHLERL--------------NLNTLIP------KQLQYLD 155
           T     +   + L+++  + +                                K L  ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 156 VSGNPRLHVDPNHF 169
           +   P +   P+  
Sbjct: 498 LYNCPNMTQLPDFL 511

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L++ S L+ L+++ N ++ L    +    +E L+  +N ++ +   ++ +    +++A N
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRV-SCSRGQGKKNIYLANN 130

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
            IT L D      S ++ L L  N I ++    +  S   L  L L  N +       + 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           + L+ LDLS N L  +         + ++ +  N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            Q++  +K L++S N L  + + +      LE L L+SN L +   L     L TL +  
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N +  L          +E L  + N IS +           + + L +N +T    L   
Sbjct: 90  NYVQELLVG-----PSIETLHAANNNISRVS---CSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 126 --SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
             S ++ LDL  N ++ +N   L      L++L++  N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQL 58
           A+    QN ++ K+  ++ + LK   +   ++   +++L L+ N L+ I    L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 59  NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
             L+++ N +    D  + + S +  L L+ N +  L        P +  L   +N+++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISR 113

Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
                     + + L+ N +  L         ++QYLD+  N    V+    
Sbjct: 114 VSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
           L     ++ L+ + N +  +     +    + +YL +N +T +         ++  L + 
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 65  YNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--- 120
            N I ++      ++   +E L L  N I  +   +   +  L+ L L SN L       
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEF 210

Query: 121 -------TLYLS--------------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
                   + L                +L   DL  N      L     K  +   V+  
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 20/151 (13%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 26  LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83
           +  +       +   +T ++L             +  L ++ N ++ +    ++ ++++E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 84  ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
            L LS N +    +   +S   LR L L++N++          S+  L  + N++ R++ 
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116

Query: 144 NTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +    +  + + ++ N    +          
Sbjct: 117 SRG--QGKKNIYLANNKITMLRDLDEGCRSR 145

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 14/147 (9%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVA 64
              +S  L+ LN+  N +  +         L+ L L+SN L  +GP       +  + + 
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC----- 119
            N +  +    +     +E   L GNG          S  + RV  +    +        
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNE 280

Query: 120 -----PTLYLSSSLRVLDLSYNHLERL 141
                PTL    +    DL     +RL
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRL 307

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            ++ ++L++ KN +K L      +  +LE+L L  N ++ + P   N    L TL +  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
            +  +P    +  S + +L +S N I  L + + Q   +L+ L +  N L        S 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 126 -SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFK 170
            +SL  L L   +L  +    L     L  L +       +    FK
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.4 bits (209), Expect = 1e-19
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
             N   L+ L +  N LK++P         L KL ++ N +  +          L +L V
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--T 121
             N +  +     S  + +E+L L    ++S+P         L VLRL   ++ +    +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 122 LYLSSSLRVLDLSY-NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
                 L+VL++S+  +L+ +  N L    L  L ++      V     +    
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLN--TLHV 63
           L +   L VL +    +  +   +      L+ L ++     D    N    LN  +L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
            +  +T++P   +     +  L LS N IS++  ++      L+ ++L    L       
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
               + LRVL++S N L  L  +       L+ L +  NP
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 11  SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
           + L+ L + K  L  +P+    +   L  L L    +  I      +  +L  L +++  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
                         +  L ++   ++++P    +   +LR L L  N +++     L   
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 126 SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
             L+ + L    L  +          L+ L+VSGN    ++ + F S  +   + + 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 7   LQNSSKLKVLNISKNC-LKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
            +   +LKVL IS    L  +         L  L +T   LT +    +     L  L++
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--T 121
           +YN I+++  + +     ++E+ L G  ++ +     +   +LRVL +  N LT+     
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 122 LYLSSSLRVLDLSYNHL 138
            +   +L  L L  N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 7/109 (6%)

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--S 126
           T  P  C  +  +   ++       ++P  IP      R+L L  N + +      +   
Sbjct: 1   TGCPPRCECSAQD-RAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFP 56

Query: 127 SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
            L  L+L+ N +  +          L+ L +  N    +    F    +
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L     ++ L+ S N + ++    N    L  L L  N LTD   L     L  + ++YN
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
            +  +  +       +E L +S N + +L     Q  P L+VL L  NHL          
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
             L  L L +N +  L L+T     L+ L +S N 
Sbjct: 324 DRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 3e-17
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L   N+S N L  L         +E+L  + N++  +       +L  L + +N +T 
Sbjct: 192 PSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVV-RGPVNVELTILKLQHNNLTD 246

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLR 129
                +  +  + E+ LS N +  +          L  L + +N L +         +L+
Sbjct: 247 TAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304

Query: 130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
           VLDLS+NHL  +  N     +L+ L +  N  + +  +   +
Sbjct: 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 6/171 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
           LQ       ++I      +     +      + +   ++ +  +    L+  RQ+  L++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
               I  +     +    +++L +  N I  LP  + Q+ P L VL L  N L+S P   
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
                 L  L +S N+LER+  +T      LQ L +S N   HVD +   S
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 8e-15
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
              +  ++ L +  N ++ LP  +      L  L L  N L+ +     +   +L TL +
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
           + N +  + D+   A + ++ L LS N ++ +        P L    +  N L++     
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIP- 210

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
              ++  LD S+N +  +        +L  L +  N
Sbjct: 211 --IAVEELDASHNSINVVRGPVN--VELTILKLQHN 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 32/186 (17%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHV 63
              ++ LK L++S N +  + S       LE L    + L  +         R L  L +
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 64  AYNAITSLPD-----------------NCISAWSE--------MEELVLSGNGISSLPNT 98
           ++       +                 +    +          +  L LS   +  L  T
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 99  IPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTL--IPKQLQYL 154
              S   L+VL +  N+  S  T      +SL+VLD S NH+       L   P  L +L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 155 DVSGNP 160
           +++ N 
Sbjct: 254 NLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 35/192 (18%)

Query: 13  LKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP----LNKCRQLNTLHVAYNA 67
              L +  N L+ LP    +    L KL L+SN L+  G           L  L +++N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCP------ 120
           + ++  N      ++E L    + +  +       S  +L  L +   H           
Sbjct: 90  VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 121 -----TLYLS----------------SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158
                 L ++                 +L  LDLS   LE+L+         LQ L++S 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 159 NPRLHVDPNHFK 170
           N    +D   +K
Sbjct: 209 NNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI---GPLNKCRQ 57
              +   L  L+IS    ++  +     L++    LE L +  N+  +        + R 
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSFQENFLPDIFTELRN 176

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L  L ++   +  L     ++ S ++ L +S N   SL     +    L+VL    NH+ 
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 118 SCPT---LYLSSSLRVLDLSYN 136
           +       +  SSL  L+L+ N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----T 121
             +TS+P   I + +    L L  N + SLP+ +      L  L L SN L+       +
Sbjct: 17  KGLTSVPTG-IPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
            + ++SL+ LDLS+N +  ++ N L  +QL++LD   + 
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 83  EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLER 140
            E+  +  G++S+P  IP        L L SN L S P       + L  L LS N L  
Sbjct: 10  TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 141 LNLNTLI---PKQLQYLDVSGN 159
               +        L+YLD+S N
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFN 88

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 9e-20
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            + + VLN++ N L+ LP+ N      L  L +  N ++ + P    K   L  L++ +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
            ++ L D   +  + + EL L  N I  + N       +L  L L  N L+S    T   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 125 SSSLRVLDLSYNHLERLN---LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
             +L+ L LS N ++ L    L+      L+ L++S N      P  F +
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
               S+L  L++  N +  L           L+ L L  N L+ +       C  L  LH
Sbjct: 45  FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
           +  N+I  + +N       +  L LS NG+SS          +L+ L L +N + +  + 
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 123 YLS----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
            L     SSL+ L+LS N ++  +        +L  L ++            
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITS 70
            +V + S   L  +P   +    +  L LT N L  +      +  QL +L V +N I+ 
Sbjct: 6   HEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSL 128
           L          ++ L L  N +S L +       +L  L L SN +            +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 129 RVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
             LDLS+N L    L T +  + LQ L +S N    +       
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 13/178 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
               + L  L++  N ++ + +    + + L  L L+ N L+        +   L  L +
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 64  AYNAITSLPDNCISAW--SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
           + N I +L    +  +  S +++L LS N I         +   L  L L++  L    T
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 122 LYLS-----SSLRVLDLSYNHLERLNLNT---LIPKQLQYLDVSGNPRLHVDPNHFKS 171
             L      +S+R L LS + L   +  T   L    L  LD+S N    V  + F  
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNE---NRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
                 L+ L + +  LK + S  +     R L  L L++N + +I    L    +L  L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 62  HVAYNAITSLPDNCISAW--------SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
            + +N +  L  +             S +  L L  NG   +P  + +    L+++ L  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGNP 160
           N+L + P        SL+ L+L  N +  +      P  + L  LD+  NP
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
                 L+VL++  N +    +         + ++YL+ N    +          L  L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 63  VAYNAITSLPD--NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           +   A+ ++    +       +  L LS N I+++ + + +    L +L L  N+L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 121 TLYLS----------SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
                          S L +L+L  N  + + +       +L+ +D+  N
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 20/188 (10%)

Query: 4   ELFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKC-----RQ 57
           EL +  +S LK L +S N +K   P   +    L  L+L +  L        C       
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 58  LNTLHVAYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
           +  L ++ + +++  +       W+ +  L LS N ++ + N      P L    L  N+
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 116 LTSCP-----------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163
           +                L L  S     +S   L +++  +    K L++L++  N    
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 164 VDPNHFKS 171
           +  N F  
Sbjct: 344 IKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 35  YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
             E    +   LT + P +    +  L++ +N +  LP    + +S++  L +  N IS 
Sbjct: 5   SHEVADCSHLKLTQV-PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQL 151
           L   + Q  P L+VL L  N L+     T    ++L  L L  N ++++  N  +  K L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 152 QYLDVSGNPRLHVDPNHF 169
             LD+S N          
Sbjct: 124 ITLDLSHNGLSSTKLGTQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP----------LNK 54
             Q    L +L++S N +  +     E    LE L L  N L  +            L  
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
              L+ L++  N    +P        E++ + L  N +++LP ++  +   L+ L L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 115 HLTSCPTLYLS---SSLRVLDLSYNHLE 139
            +TS           +L  LD+ +N  +
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNN----------ENRYLEKLYLTSNALTDIGP--LNK 54
           L     ++ LN+ ++  K   SL +            + LE L +  N +  I       
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEM-----EELVLSGNGISSLPNTIPQSWPHLRVL 109
              L  L ++ +   SL       +  +       L L+ N IS + +       HL VL
Sbjct: 352 LINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 110 RLHSNHLTSCPT---LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
            L  N +    T        ++  + LSYN   +L  N+      LQ L +   
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 9   NSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP-----------LNKCR 56
             + L +L++S N L ++ + +      LE  +L  N +  +             LN  R
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 57  QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
                 ++  ++  + D        +E L +  N I  + + +     +L+ L L ++  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 117 TSCP------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
           +              S L +L+L+ N + ++  +       L+ LD+  N 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 23/143 (16%)

Query: 5   LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
            FL+  S L +LN+  N    +P                             +L  + + 
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPV---------------------EVFKDLFELKIIDLG 568

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
            N + +LP +  +    ++ L L  N I+S+       ++ +L  L +  N    C    
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD-CTCES 627

Query: 124 LSSSLRVLDLSYNHLERLNLNTL 146
           ++  +  ++ ++ ++  L+ + L
Sbjct: 628 IAWFVNWINETHTNIPELSSHYL 650

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-------SLNNENRYLEKLYLTSNALTDIGPLNKCRQLN 59
               +++ V+ +  N LK           +      L  + +    +T I P      L 
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKK----LSYIRIADTNITTI-PQGLPPSLT 195

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
            LH+  N IT +    +   + + +L LS N IS++ N    + PHLR L L++N L   
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255

Query: 120 P-TLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
           P  L     ++V+ L  N++  +  N   P            + +  NP
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 12/161 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
                KL+ L +SKN LK LP      + L++L +  N +T +     N   Q+  + + 
Sbjct: 96  FAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153

Query: 65  YNAITS--LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
            N + S  + +       ++  + ++   I+++P  +P   P L  L L  N +T     
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAA 210

Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
            L   ++L  L LS+N +  ++  +L     L+ L ++ N 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 12/169 (7%)

Query: 13  LKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAIT 69
             +L++  N +  +   + +N + L  L L +N ++ I P       +L  L+++ N + 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 70  SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLS 125
            LP+        ++EL +  N I+ +  ++      + V+ L +N L S           
Sbjct: 114 ELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
             L  + ++  ++  +      P  L  L + GN    VD    K   +
Sbjct: 171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 217

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
            Q   KL  + I+   +  +P     +  L +L+L  N +T +    L     L  L ++
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN---------- 114
           +N+I+++ +  ++    + EL L+ N +  +P  +     +++V+ LH+N          
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283

Query: 115 -------HLTSCPTLYLSS-----------------SLRVLDLSYN 136
                     S   + L S                     + L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 35  YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
           +L  +  +   L  + P +       L +  N IT + D        +  L+L  N IS 
Sbjct: 32  HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY 153
           +          L  L L  N L   P   +  +L+ L +  N + ++  +      Q+  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 154 LDVSGNP 160
           +++  NP
Sbjct: 150 VELGTNP 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 11/164 (6%)

Query: 7   LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
                 +  + +  N L+         +   L  L ++   LT I P +    LN LH+ 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLPETLNELHLD 201

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLY 123
           +N I ++    +  +S++  L L  N I  + N      P LR L L +N L+  P  L 
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
               L+V+ L  N++ ++ +N   P            + +  NP
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGPLN---KCRQLNTLHVAYN 66
           S L  L I  N ++ +P       R +  + +  N L + G         +LN L ++  
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
            +T +P +       + EL L  N I ++       +  L  L L  N +       LS 
Sbjct: 183 KLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 126 -SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVR 177
             +LR L L  N L R+       K LQ + +  N    V  N F      V+
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
           S    +L++  N +  L   + +  ++L  L L +N ++ I     +  R+L  L+++ N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC---PTLY 123
            +  +P N     S + EL +  N I  +P  +     ++  + +  N L +    P  +
Sbjct: 113 HLVEIPPN---LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
               L  L +S   L  +  +   P+ L  L +  N    ++      Y  
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 4e-13
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 35  YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
           +L  +  +   L  + P         L +  N I+ L  +       +  LVL  N IS 
Sbjct: 34  HLRVVQCSDLGLKAV-PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY 153
           +          L+ L +  NHL   P   L SSL  L +  N + ++        + +  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 154 LDVSGNP 160
           +++ GNP
Sbjct: 152 IEMGGNP 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.6 bits (202), Expect = 3e-19
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 7   LQNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQL 58
               + L+ L++S N  L+ +       L      L  L+L    L ++GP        L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGR----LHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 59  NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
             L++  NA+ +LPD+       +  L L GN ISS+P    +    L  L LH N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 119 CPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                      L  L L  N+L  L    L P + LQYL ++ NP
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            +  + + +  N +  +P+ +    R L  L+L SN L  I          L  L ++ N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 67  A-ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           A + S+          +  L L   G+  L   + +    L+ L L  N L + P     
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 126 --SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
              +L  L L  N +  +          L  L +  N   HV P+ F
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG-I 92
            ++++L  N ++ +       CR L  L +  N +  +     +  + +E+L LS N  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 93  SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-K 149
            S+          L  L L    L           ++L+ L L  N L+ L  +T     
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 150 QLQYLDVSGNPRLHVDPNHFKS 171
            L +L + GN    V    F+ 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRG 175

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 8e-19
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L   + L+ L  + N +  +  L      L++L L  N L DIG L     L  L +A N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I++L    +S  +++ EL L  N IS++          L  L L+ N L     +    
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLK 309

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           +L  L L +N++  +  +++L   +LQ L    N
Sbjct: 310 NLTYLTLYFNNISDISPVSSL--TKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 8/165 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L + + L  L+++ N +  L  L+     L +L L +N +++I PL     L  L +  N
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLELNEN 297

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            +  +    IS    +  L L  N IS +      S   L+ L  ++N ++   +L   +
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSLANLT 353

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
           ++  L   +N +  L  L  L   ++  L ++     +   N+  
Sbjct: 354 NINWLSAGHNQISDLTPLANL--TRITQLGLNDQAWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 9e-15
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 7/153 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
             +  ++  L   +  +K +  +      L ++  ++N LTDI PL    +L  + +  N
Sbjct: 42  QTDLDQVTTLQADRLGIKSIDGVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I  +    ++  + +  L L  N I+ +     ++  +L  L L SN ++    L   +
Sbjct: 101 QIADITP--LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLT 156

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           SL+ L       +   L  L    L+ LD+S N
Sbjct: 157 SLQQLSFGNQVTDLKPLANL--TTLERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L   + L+ L+       + P  N     LE+L ++SN ++DI  L K   L +L    N
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKPLANLTT--LERLDISSNKVSDISVLAKLTNLESLIATNN 209

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I+ +    +   + ++EL L+GN +  +      S  +L  L L +N +++   L   +
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLT 265

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
            L  L L  N +  +  L  L    L  L+++ N 
Sbjct: 266 KLTELKLGANQISNISPLAGL--TALTNLELNENQ 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 8/154 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
               ++     + K  +    S  +    +  L      +  I  +     L  ++ + N
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTD-LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 78

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            +T +    +   +++ +++++ N I+ +      +  +L  L L +N +T    L   +
Sbjct: 79  QLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDPLKNLT 134

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           +L  L+LS N +  +  L+ L    LQ L     
Sbjct: 135 NLNRLELSSNTISDISALSGL--TSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L   + L  L +++N L+ +  ++N  + L  L L  N ++DI P++   +L  L    N
Sbjct: 283 LAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            ++ +    ++  + +  L    N IS L      +   +  L L+    T+ P  Y  +
Sbjct: 342 KVSDVSS--LANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYK-A 396

Query: 127 SLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
           ++ + +   N    L     I         D++ N
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           + N   L  L +  N +  +  +++    L++L+  +N ++D+  L     +N L   +N
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSS-LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I+ L    ++  + + +L L+    ++ P     +      ++  +  L +  T+    
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421

Query: 127 SLRVLDLSYNHLERLN 142
           S    D+++N     N
Sbjct: 422 SYTEPDITWNLPSYTN 437

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 8e-19
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L++ S L+ L+++ N ++ L    +    +E L+  +N ++ +   ++ +    +++A N
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRV-SCSRGQGKKNIYLANN 130

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
            IT L D      S ++ L L  N I ++    +  S   L  L L  N +       + 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           + L+ LDLS N L  +         + ++ +  N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 3e-17
 Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
           L     ++ L+ + N +  +     +    + +YL +N +T +         ++  L + 
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 65  YNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TL 122
            N I ++      ++   +E L L  N I  +   +   +  L+ L L SN L       
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEF 210

Query: 123 YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
             ++ +  + L  N L  +       + L++ D+ GN 
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 12/172 (6%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGP--LNKCRQL 58
           A+    QN ++ K+  ++ + LK    SL      +++L L+ N L+ I    L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 59  NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
             L+++ N +    D  + + S +  L L+ N +  L        P +  L   +N+++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISR 113

Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
                     + + L+ N +  L         ++QYLD+  N    V+    
Sbjct: 114 VSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.3 bits (180), Expect = 9e-16
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            Q++  +K L++S N L  + + +      LE L L+SN L +   L     L TL +  
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N +  L          +E L  + N IS +  +  Q     + + L +N +T    L   
Sbjct: 90  NYVQELLVG-----PSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEG 141

Query: 126 --SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
             S ++ LDL  N ++ +N   L      L++L++  N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 20/151 (13%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 26  LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83
           +  +       +   +T ++L             +  L ++ N ++ +    ++ ++++E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 84  ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
            L LS N +    +   +S   LR L L++N++          S+  L  + N++ R++ 
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116

Query: 144 NTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           +    +  + + ++ N    +          
Sbjct: 117 SRG--QGKKNIYLANNKITMLRDLDEGCRSR 145

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 45  ALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWP 104
           A+ +I       +     V  +++     +   +   ++EL LSGN +S +       + 
Sbjct: 1   AIHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 105 HLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164
            L +L L SN L     L   S+LR LDL+ N+++ L +       ++ L  + N    V
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRV 114

Query: 165 DPNHFKS 171
             +  + 
Sbjct: 115 SCSRGQG 121

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 6/168 (3%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVA 64
              +S  L+ LN+  N +  +         L+ L L+SN L  +GP       +  + + 
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS-WPHLRVLRLHSNHLTSCPTLY 123
            N +  +    +     +E   L GNG          S    ++ +   +    +     
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
             +   +        E L        +L  L    +  L    +  + 
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFA--DRLIALKRKEHALLSGQGSETER 327

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 19/176 (10%), Positives = 44/176 (25%), Gaps = 8/176 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL-HVAY 65
            Q+++ +  +++  N L ++      ++ LE   L  N        +   +   +  VA 
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
             +  L        +              LP         L+             T  L 
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 126 S------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
                    R +D        +     +  +    L+           N  +++  
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 7/163 (4%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
            +V  ++K  +K L   N E   +  L        +  P     +L  L    +A+ S  
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 73  DNCIS-------AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
            +            +   E+        ++ + +         L      L    +    
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
           +   +       + ++ L     +Q     +    + + +   
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 9e-19
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 13/172 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLN 59
            ++   L++L +S+N ++ +       L N    L  L L  N LT I         +L 
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLAN----LNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
            L +  N I S+P    +    +  L L     +S +     +   +LR L L   +L  
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
            P L     L  LDLS NHL  +   +      LQ L +  +    ++ N F
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTS-NALTDIGP--LNKCRQLNTLH 62
               SKLK L +  N ++ +PS        L +L L     L+ I          L  L+
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
           +A   +  +P+  ++   +++EL LSGN +S++     Q   HL+ L +  + +      
Sbjct: 192 LAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                 SL  ++L++N+L  L  +   P   L+ + +  NP
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 5e-17
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
           S+  ++LN+ +N ++++   + ++ R+LE L L+ N +  I     N    LNTL +  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCPTLYLS 125
            +T++P+      S+++EL L  N I S+P+      P LR L L     L+        
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 126 --SSLRVLDLSYNHLERLN-LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
             S+LR L+L+  +L  +  L  L   +L  LD+SGN    + P  F+ 
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPL--IKLDELDLSGNHLSAIRPGSFQG 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLN 59
            ++   L+VL + +N ++ +       L +    L  L L  N LT I         +L 
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLAS----LNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
            L +  N I S+P    +    +  L L     +  +     +   +L+ L L   ++  
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
            P L     L  L++S NH   +   +      L+ L V  +    ++ N F
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 5e-17
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            S  + LN+ +N ++M+ +    +  +LE L L  N++  I     N    LNTL +  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCPTLYLS 125
            +T +P       S++ EL L  N I S+P+      P L  L L     L         
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 126 --SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
              +L+ L+L   +++  ++  L P   L+ L++SGN    + P  F    S  ++++ 
Sbjct: 194 GLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTS-NALTDIGP--LNKCRQL 58
            +  SKL+ L +  N ++ +PS     + +    L +L L     L  I          L
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPS----LMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 59  NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
             L++    I  +P+  ++    +EEL +SGN    +          L+ L + ++ ++ 
Sbjct: 199 KYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 119 CPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                    +SL  L+L++N+L  L  +   P + L  L +  NP
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 8/156 (5%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
           S++   +  ++  L  +P           L L  N +  I          L  L +  N+
Sbjct: 53  SNQFSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
           I  +     +  + +  L L  N ++ +P+   +    LR L L +N + S P+   +  
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 126 SSLRVLDLS-YNHLERLNLNTLIP-KQLQYLDVSGN 159
            SL  LDL     LE ++         L+YL++   
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
                 L  L++++  +  +          L+ L LT+N L  +    L+  + L  L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
               I+S+    +     +E L L  N ISS+          L+VL   +N +       
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 124 LSS----SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
           +SS    +   L+L+ N +  +          Q L+  G   L V     K
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 9/184 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI---GPLNKCRQLNTLH 62
           L+N S L+ LN+S N    L +   +    LE L L    L       P      L  L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP---QSWPHLRVLRLHSNHLTSC 119
           ++++ +    +        ++ L L GN             Q+   L +L L    L+S 
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 120 PTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVR 177
                +    +  +DLS+N L   ++  L   +  YL+++ N    + P+          
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551

Query: 178 VYIQ 181
           + ++
Sbjct: 552 INLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 8/170 (4%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            +  + L  S N L  + +        L  L LT   +  I         +L+TL +  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
            +  + +  +S    ++ L     GISS+      +   L  L L SNH++S      + 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 125 SSSLRVLDLSYNHLERLNLNTLIP---KQLQYLDVSGNPRLHVDPNHFKS 171
           +  L+VLD   N +  L+   +          L+++GN    ++P  F S
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 8e-18
 Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 12/178 (6%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNE---NRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
            L+N   L+ L++S + ++     N +     +L+ L L+ N    +      +C QL  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 61  LHVAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
           L +A+  +      +       ++ L LS + +      +    P L+ L L  NH    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 120 PTLYLS-----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
                +       L +L LS+  L  ++ +     K + ++D+S N            
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
            +   +L++L+++   LK+  + +       L+ L L+ + L        +    L  L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 63  VAYNAITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
           +  N          ++   +   E LVLS   +SS+      S   +  + L  N LTS 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 120 PTLYLSS-SLRVLDLSYNHLERLNLNTL-IPKQLQYLDVSGNP 160
               LS      L+L+ NH+  +  + L I  Q + +++  NP
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 9/162 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
               S L+ L+++   L  LPS       L+KL L++N   ++     +    L  L + 
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 65  YNAI-TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW--PHLRVLRLHSNHLTSCPT 121
            N     L   C+     + EL LS + I +      Q     HL+ L L  N   S  T
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 122 LYLSS--SLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
                   L +LDL++  L+  +  +       L+ L++S +
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 14  KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSL 71
           K  N     L  +P     +   E L  + N L  I     ++   L  L +    I  +
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 72  PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLR 129
            ++   +   ++ LVL+ N +  +  T       L+ L      ++S   + L    +L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 130 VLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
            L L  NH+  + L    P ++L+ LD   N   ++      S
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL-TDIGP--LNKCRQL 58
           L   L   S LK L +S N  + L  ++  N   L  L +  N    ++G   L     L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 59  NTLHVAYNAITSLPDNCISAW--SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
             L ++++ I +     +     S ++ L LS N   SL     +  P L +L L    L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 117 TSCPTLYL---SSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
                         L+VL+LS++ L+  +         LQ+L++ GN
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 30/203 (14%), Positives = 69/203 (33%), Gaps = 35/203 (17%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
            Q+  +L  L ++ N L  +     +  + L+ L+     ++ I   PL+  + L +L++
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH--SNHLTS-CP 120
             N I+S+         +++ L    N I  L      S      L L+   N +    P
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 121 TLYLSSSLRVLDLSYNH---------------------LERLNLNTLIPK--------QL 151
             + S+  + L+                           E ++   + P          +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 152 QYLDVSGNPRLHVDPNHFKSYRS 174
           + +++  +   ++  N F  +  
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSG 279

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 9   NSSKLKVLNISKNCLKMLPSLNNEN---RYLEKLYLTSNALTDIGPL----NKCRQLNTL 61
           +S+  + LN       ++     +N   + L           DI P          + ++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
           ++  +   ++  N    +S ++EL L+   +S LP+ +      L+ L L +N   +   
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQ 318

Query: 122 LYLS--SSLRVLDLSYNHLE-RLNLNTLIP-KQLQYLDVSGN 159
           +  S   SL  L +  N     L    L   + L+ LD+S +
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 16/179 (8%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI-----GPLNKCRQ 57
            + L N   L+ L +  N +  +          L+ L   +NA+  +       L +   
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS--SLPNTIPQSWPHLRVLRLHSNH 115
           L +L++  N I  +        +  + L   G              +   L +       
Sbjct: 182 L-SLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 116 LTSCPTLYLSS----SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
                          S+  ++L  ++   ++ NT      LQ LD++    L   P+  
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGL 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 9/142 (6%)

Query: 6   FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI-----GPLNKCRQLN 59
             QN   LKVLN+S + L +    L +    L+ L L  N            L    +L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
            L +++  ++S+  +  ++   M  + LS N ++S           +  L L SNH++  
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538

Query: 120 P--TLYLSSSLRVLDLSYNHLE 139
               L + S  R ++L  N L+
Sbjct: 539 LPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 87  LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
               G++ +P T+P        L    N L +      S   +L  LDL+   +  ++ +
Sbjct: 19  CENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
           T     +L  L ++ NP + +        ++
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            S  K +++S N LK+L S +  N   L+ L L+   +  I     +    L+ L +  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLY 123
            I S      S  + +E LV     ++SL +        L+ L +  N + SC       
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
             ++L  +DLSYN+++ + +N L      P+    LD+S NP   +    F+ 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSL---NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLH 62
                 L  L++S+N L         +     L  L L+ N    +        +L  L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 63  VAYNAITSLPD-NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
             ++ +  + + +   +  ++  L +S        + I      L  L++  N       
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
                 +++L  LDLS   LE+++        +LQ L++S N  L +D +H+  
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
             N S+L+ L++S+  ++ +         +L  L LT N +    P   +    L  L  
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTS---- 118
               + SL    I     +++L ++ N I S        +  +L  + L  N++ +    
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 119 --CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
                         LD+S N ++ +        +L  L + GN          
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 8/164 (4%)

Query: 14  KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSL 71
                    L  +P   +     + + L+ N L  +     +   +L  L ++   I ++
Sbjct: 14  ITYQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 72  PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLR 129
            D        +  L+L+GN I S           L  L      L S  +  +    +L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 130 VLDLSYNHLERLNLNTLIP--KQLQYLDVSGNPRLHVDPNHFKS 171
            L++++N +    L         L ++D+S N    +  N  + 
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
              +  KL  L+IS    K+           L  L +  N+  D            L  L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
            ++   +  +          ++ L +S N +  L ++       L  L    N + +   
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 121 -TLYLSSSLRVLDLSYNHL 138
              +   SL   +L+ N +
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSL---------NNENRYLEKLYLTSNALTDIGP-- 51
           ++  LQN + L V  +     K   +L            +  +++  LT           
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 52  LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111
            +    ++ + +A  +I  L D  +    + + L +    +   P       P L+ L L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTL 335

Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNT---LIPKQLQYLDVSGNPRLHVDPNH 168
             N  +         SL  LDLS N L      +   L    L++LD+S N    +   +
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN 394

Query: 169 FKSYRS 174
           F     
Sbjct: 395 FMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 13/169 (7%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
            L+   +N      L++S N +  +     +   L +L L  N  +        + L  L
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 62  HV---------AYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110
           HV             +     + +       ++E  L+     S          ++  + 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 111 LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           L    +     +      + L +    L++     L    L+ L ++ N
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMN 338

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 7   LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQL 58
           +     LK LN++ N +    LP+  +    L  + L+ N +  I            +  
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 59  NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS-LPNTIPQSWPHLRVLRLHSNHLT 117
            +L ++ N I  + D       ++ EL L GN  SS +  T  Q+   L V RL      
Sbjct: 184 LSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 118 SCPTLYL----------SSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
               L +            ++    L+Y +    ++        +  + ++G 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 87  LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
                +S +P+ IP      + + L  N L    +   S  S L+ LDLS   +E +   
Sbjct: 18  CMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
                  L  L ++GNP     P  F    S
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
              N++ L  L++SK  L+ +     +    L+ L ++ N L  +     N+   L+TL 
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPT 121
            ++N I +           +    L+ N ++ +        W   +   L +    +C T
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587

Query: 122 LYLSSSLRVLDLS 134
               ++  VLD +
Sbjct: 588 PVEMNTSLVLDFN 600

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 6e-18
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           + N ++L  L I  N +  L  L N    L  L + +N ++DI  +    +L  L+V  N
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLAN-LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I+ +    ++  S++  L L+ N + +    +     +L  L L  NH+T    L   S
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS 333

Query: 127 SLRVLDLSYNHLER 140
            +   D +   +++
Sbjct: 334 KMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           + N + L  L+++ N ++ +  L +    L       N +TDI P+    +LN+L +  N
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLAS-LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT L    ++  S++  L +  N IS +     +    L++L + SN ++    L   S
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQISDISVLNNLS 287

Query: 127 SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
            L  L L+ N L   ++  +     L  L +S N 
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L + + L       N +  +  + N    L  L + +N +TD+ PL    QL  L +  N
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
            I+ +    +   ++++ L +  N IS +      +   L  L L++N L +     +  
Sbjct: 254 QISDINA--VKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 126 -SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
            ++L  L LS NH+  +  L +L   ++   D +   
Sbjct: 310 LTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 6e-17
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 7/155 (4%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            L N +K+  LN+  N      S  +    L  L +T + + D+ P+     L +L + Y
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N I  +    +++ + +       N I+ +      +   L  L++ +N +T    L   
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANL 242

Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           S L  L++  N +  +  +  L   +L+ L+V  N
Sbjct: 243 SQLTWLEIGTNQISDINAVKDL--TKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L N + L  L ++++ +K +  + N    L  L L  N + DI PL     L+      N
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIAN-LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT +    ++  + +  L +  N I+ L      +   L  L + +N ++    +   +
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDINAVKDLT 265

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
            L++L++  N +  +  LN L   QL  L ++ N   + D      
Sbjct: 266 KLKMLNVGSNQISDISVLNNL--SQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 9/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
             + ++     + K  +  + +       + KL +    +  I  +     L  L++  N
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELES-ITKLVVAGEKVASIQGIEYLTNLEYLNLNGN 76

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT +    +S   ++  L +  N I+ +     Q+  +LR L L+ ++++    L   +
Sbjct: 77  QITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLT 132

Query: 127 SLRVLDLSYNHLERL--NLNTLIPKQLQYLDVSGN 159
            +  L+L  NH       L+ +    L YL V+ +
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNM--TGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
            +    +  L ++   +  +  +      LE L L  N +TDI PL+   +L  L++  N
Sbjct: 40  QEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLS 125
            IT +    +   + + EL L+ + IS +      +   +  L L +NH  S  + L   
Sbjct: 99  KITDISA--LQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLSDLSPLSNM 154

Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           + L  L ++ + ++ +  +  L    L  L ++ N
Sbjct: 155 TGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
              L      +  +    +      +  L   ++TD+    +   +  L VA   + S+ 
Sbjct: 2   AATLATLPAPINQIFPDAD-LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 73  DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLD 132
              I   + +E L L+GN I+ +      +   L  L + +N +T    L   ++LR L 
Sbjct: 61  G--IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKITDISALQNLTNLRELY 116

Query: 133 LSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           L+ +++  +  L  L   ++  L++  N
Sbjct: 117 LNEDNISDISPLANL--TKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            L N S+L  L I  N +  + ++ +    L+ L + SN ++DI  LN   QLN+L +  
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKD-LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           N + +     I   + +  L LS N I+ +      S   +      +  + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIK 346

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 9e-18
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           +Q    +  L ++ N L  +  L N  + L  L+L  N + D+  L   ++L +L + +N
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLAN-LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I+ +    +    ++E L L  N I+ +          L  L L  N ++    L   +
Sbjct: 123 GISDING--LVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVPLAGLT 178

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
            L+ L LS NH+  L  L  L  K L  L++     L+   NH  
Sbjct: 179 KLQNLYLSKNHISDLRALAGL--KNLDVLELFSQECLNKPINHQS 221

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 36  LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
             K  L   ++TD    N+   ++ +    + I S+    I     + +L L+GN ++ +
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI 83

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
                 +  +L  L L  N +    +L     L+ L L +N +  +  L  L   QL+ L
Sbjct: 84  KPL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL--PQLESL 139

Query: 155 DVSGN 159
            +  N
Sbjct: 140 YLGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            L   +KL  L++  N +  +  L      L+ LYL+ N ++D+  L   + L+ L +  
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSL 95
               + P N  S       +  +   + + 
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 11/173 (6%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
               K L++S N L+ L S +  +   L+ L L+   +  I          L+TL +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLY 123
            I SL     S  S +++LV     ++SL N        L+ L +  N + S        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
             ++L  LDLS N ++ +    L     +P     LD+S NP   + P  FK 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 7/161 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHV 63
              ++ LK L++S N +  + S       LE L    + L  +         R L  L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGI-SSLPNTIPQSWPHLRVLRLHSNHLTSCP-- 120
           ++       +   +  S +E L ++GN    +    I     +L  L L    L      
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                SSL+VL+++ N L+ +          LQ + +  NP
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 36  LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
            + L L+ N L  +         +L  L ++   I ++ D    + S +  L+L+GN I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP--K 149
           SL          L+ L     +L S     +    +L+ L++++N ++   L        
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 150 QLQYLDVSGNPRLHVDPNHFKSYRS 174
            L++LD+S N    +     +    
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQ 174

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
             +  +L+VL++S+  ++ +     ++  +L  L LT N +  +     +    L  L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTS---- 118
               + SL +  I     ++EL ++ N I S        +  +L  L L SN + S    
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 119 --CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP-RLHVDPNHFKS 171
                  +      LDLS N +  +        +L  L +  N   L+V     + 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRY---LEKLYLTSNALTDIGP-LNKCRQLNTLHVAYN 66
             L+ L++S+N L      +  +     L+ L L+ N +  +        QL  L   ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 67  AITSLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
            +  + +  +  +   +  L +S        N I      L VL++  N         + 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 126 ---SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
               +L  LDLS   LE+L+         LQ L+++ N    V    F  
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
              +   L  L+IS    ++  +   N    LE L +  N+  +        + R L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCP 120
            ++   +  L     ++ S ++ L ++ N + S+P+ I      L+ + LH+N    SCP
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 18  ISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCIS 77
             K+ L+ L +L  E   L  L    + + D+   N    +++  +    I  + D   S
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 78  AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
                + L L        P    +S   L+ L   SN   +  +     SL  LDLS N 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 138 LERLNLNTLI---PKQLQYLDVSGN 159
           L      +        L+YLD+S N
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
            L +  Q       L++S N +  +     +   L KL L +N  +        + L  L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 62  HVAY---------NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR-- 110
            V             +     + +     +         +    + I   +  L  +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 111 -LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
            L S  +        +   + L+L           TL  K L+ L  + N
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFG--QFPTLKLKSLKRLTFTSN 335

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP------LNKC 55
              + +   LK LN++ N ++        +    LE L L+SN +  I            
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 56  RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSN 114
               +L ++ N +  +          + +L L  N  S ++  T  Q    L V RL   
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 115 HLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146
              +   L       +  L    +E   L  L
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 2e-17
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 26/186 (13%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
                + +  +  + + +K +  +      + KL+L  N LTDI PL   + L  L +  
Sbjct: 38  TQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96

Query: 66  NAIT--------------SLPDNCIS------AWSEMEELVLSGNGISSLPNTIPQSWPH 105
           N I               SL  N IS         ++E L L  N I+ +          
Sbjct: 97  NKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTK 154

Query: 106 LRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHV 164
           L  L L  N ++    L   + L+ L LS NH+  L  L  L  K L  L++     L+ 
Sbjct: 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL--KNLDVLELFSQECLNK 212

Query: 165 DPNHFK 170
             NH  
Sbjct: 213 PINHQS 218

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 6e-17
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L N   L  L + +N +K L SL +  + L+ L L  N ++DI  L    QL +L++  N
Sbjct: 83  LTNLKNLGWLFLDENKIKDLSSLKDLKK-LKSLSLEHNGISDINGLVHLPQLESLYLGNN 141

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT +    +S  ++++ L L  N IS +          L+ L L  NH++    L    
Sbjct: 142 KITDITV--LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDLRALAGLK 197

Query: 127 SLRVLDLSYNHLERLNLNTL----IPKQLQYLD 155
           +L VL+L         +N      +P  ++  D
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 2e-13
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 36  LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
           + +    S  +  I P +   +    ++   ++T       +  + +++++ + + I S+
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
                Q  P++  L L+ N LT    L    +L  L L  N ++ L +L  L  K+L+ L
Sbjct: 59  QGI--QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL--KKLKSL 114

Query: 155 DVSGN 159
            +  N
Sbjct: 115 SLEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 3e-12
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 13  LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
           +         +K +   +       K  L   ++TD    N+   ++ +    + I S+ 
Sbjct: 1   MGETITVSTPIKQIFPDDA-FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 59

Query: 73  DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLD 132
              I     + +L L+GN ++ +      +  +L  L L  N +    +L     L+ L 
Sbjct: 60  --GIQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115

Query: 133 LSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           L +N +  +  L  L   QL+ L +  N
Sbjct: 116 LEHNGISDINGLVHL--PQLESLYLGNN 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRY----LEKLYLTSNALTDI----GPLNKCRQ 57
           F Q+   L+ L++S+N +      N+  +     L+ L L+ N L  +      L   + 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
           L +L ++ N    +PD+C     +M  L LS  GI  +   IPQ+   L VL + +N+L 
Sbjct: 389 LTSLDISRNTFHPMPDSCQW-PEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLD 444

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           S         L+ L +S N L+ L   +L P  L  + +S N    V    F    S
Sbjct: 445 SFSLFL--PRLQELYISRNKLKTLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTS 498

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 9/168 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAI 68
               V +        +PS       ++ L L+ N +T IG   L  C  L  L +  + I
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CPTLYLS 125
            ++  +   +   +E L LS N +SSL ++       L+ L L  N   +          
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 126 SSLRVLDLS-YNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
           ++L+ L +        +          L  L++      +      KS
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 29/170 (17%), Positives = 68/170 (40%), Gaps = 8/170 (4%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
           ++ +K L++S N +  +   +      L+ L L S+ +  I          L  L ++ N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRL-HSNHLTSCPTLYL 124
            ++SL  +     S ++ L L GN   +L   ++  +  +L+ LR+ +    +    +  
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 125 S--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
           +  +SL  L++    L      +L   + + +L +  +    +       
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 8/171 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
           L+  + L+VL +  + +  +          LE L L+ N L+ +          L  L++
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 64  AYNAITSLPDN-CISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             N   +L         + ++ L +      S +          L  L + +  L +  +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 122 LYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
             L S   +  L L  +    L          ++YL++          +  
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 19/197 (9%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN--------- 53
             +         + + S N L  L     E   +E    T N L D  P           
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 54  -KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
            +   +  LH+    +        S   +++ + +  + +  +P +  Q    L  L L 
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 113 SNHLTSCPTLYLS-----SSLRVLDLSYNHLERLNLNTLI---PKQLQYLDVSGNPRLHV 164
            N +        +      SL+ L LS NHL  +     I    K L  LD+S N   H 
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401

Query: 165 DPNHFKSYRSYVRVYIQ 181
            P+  +       + + 
Sbjct: 402 MPDSCQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 18/183 (9%)

Query: 7   LQNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTL 61
               S LK LN+  N  + L   SL      L+ L + +    ++I          LN L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
            +   ++ +     + +  ++  L L  +  + L          +R L L   +L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 122 LYLS-------------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
             L                  + D S+N L +L    L   ++++ D + N     +P+ 
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 169 FKS 171
              
Sbjct: 274 SDV 276

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
           C           + TS+P    +A   M+ L LS N I+ + +   ++  +L+VL L S+
Sbjct: 4   CDASGVCDGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 115 HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
            + +      Y   SL  LDLS NHL  L+ +   P   L+YL++ GNP
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 25/194 (12%)

Query: 6   FLQNSSKLKVLNIS-KNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
              N + L+ L I        +  ++      L +L + + +L +     L   R ++ L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH------ 115
            +  +    L +      S +  L L    ++    +          ++  +        
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 116 -----LTSCPTLYLS-SSLRVLDLSYNHLERLNLNT---------LIPKQLQYLDVSGNP 160
                L       L  S +   D + N L   N +          +    ++ L +    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 161 RLHVDPNHFKSYRS 174
             +     +     
Sbjct: 298 LFYDLSTVYSLLEK 311

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
            +       L+VL++S N L            L++LY++ N L  +   +    L  + +
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDASLFPVLLVMKI 480

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGN 90
           + N + S+PD      + ++++ L  N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 104 PHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL 162
               V    S   TS P+  L+++++ LDLS+N +  +    L     LQ L +  +   
Sbjct: 5   DASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 163 HVDPNHFKSYRS 174
            ++ + F S  S
Sbjct: 64  TIEGDAFYSLGS 75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 7e-17
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           S+L  L    N L  LP        L++L ++ N L  +  L    +L  L    N +TS
Sbjct: 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS 215

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LP       S ++EL++SGN ++SLP    +    L+ L +  N LTS P   L S L  
Sbjct: 216 LPALP----SGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPM--LPSGLLS 265

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
           L +  N L RL  + +       +++ GNP
Sbjct: 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           +   VLN+ ++ L  LP     +  +  L +  N LT +  L    +L TL V+ N +TS
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS 95

Query: 71  LPDNCISAWSEMEELVLSGNGISSLP-------------NTIPQSWPHLRVLRLHSNHLT 117
           LP        E+         + +LP              ++P   P L+ L +  N L 
Sbjct: 96  LPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           S P   L S L  L    N L  L +    P  LQ L VS N
Sbjct: 155 SLPA--LPSELCKLWAYNNQLTSLPML---PSGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 9e-16
 Identities = 43/149 (28%), Positives = 61/149 (40%), Gaps = 18/149 (12%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
            +L+ L +S N L  LP L      L         L  +        L  L +  N +TS
Sbjct: 81  PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTS 135

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LP         ++EL +S N ++SLP    +    L  L  ++N LTS P L   S L+ 
Sbjct: 136 LPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLPMLP--SGLQE 185

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           L +S N L  L     +P +L  L    N
Sbjct: 186 LSVSDNQLASL---PTLPSELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 36  LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
              L +  + LT + P      + TL +  N +TSLP        E+  L +SGN ++SL
Sbjct: 42  NAVLNVGESGLTTL-PDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLTSL 96

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLD 155
           P   P     L +      HL + P+      L  L +  N L  L +    P  LQ L 
Sbjct: 97  PVLPPG-LLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPVL---PPGLQELS 147

Query: 156 VSGNP 160
           VS N 
Sbjct: 148 VSDNQ 152

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
                 L+V  + +T+LPD      + +  LV+  N ++SLP   P+    LR L +  N
Sbjct: 39  NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSLPALPPE----LRTLEVSGN 91

Query: 115 HLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
            LTS P        L +      HL  L      P  L  L + GN
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGN 131

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 7e-12
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           S+L  L    N L  LP+L +    L++L ++ N LT +  L    +L  L V+ N +TS
Sbjct: 201 SELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS 255

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LP       S +  L +  N ++ LP ++         + L  N L+      L      
Sbjct: 256 LPMLP----SGLLSLSVYRNQLTRLPESLIH-LSSETTVNLEGNPLSERTLQALREITSA 310

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
              S   +         P++ + L ++    L 
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAIT 69
           S+LK L +S N L  LP L +    L  L +  N LT +   L       T+++  N ++
Sbjct: 241 SELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297

Query: 70  SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLR 129
                   A  E+         I         +    R L L +            +   
Sbjct: 298 ERTLQ---ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

Query: 130 VLDLSYN 136
              +   
Sbjct: 355 RWHMFGQ 361

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 11/175 (6%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
               K L++S N L+ L S +  +   L+ L L+   +  I          L+TL +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CPTLY 123
            I SL     S  S +++LV     ++SL N        L+ L +  N + S        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKSYR 173
             ++L  LDLS N ++ +    L     +P     LD+S NP   + P  FK  R
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTLHV 63
              ++ LK L++S N +  + S       LE L    + L  +         R L  L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
           ++       +   +  S +E L ++GN    +    I     +L  L L    L      
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
             +  SSL+VL++S+N+   L+         LQ LD S N  +       + 
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 9/162 (5%)

Query: 7   LQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLH 62
             +   L+ L++S+N L         +     L+ L L+ N +  +        QL  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 63  VAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
             ++ +  +   +   +   +  L +S        N I      L VL++  N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
                   +L  LDLS   LE+L+         LQ L++S N
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
             +  +L+VL++S+  ++ +     ++  +L  L LT N +  +     +    L  L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW---PHLRVLRLHSNHLTS-- 118
               + SL +  I     ++EL ++ N I S    +P+ +    +L  L L SN + S  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 119 ----CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
                    +      LDLS N +  +        +L  L +  N
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
              +   L  L+IS    ++    + N    LE L +  N+  +        + R L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
            ++   +  L     ++ S ++ L +S N   SL     +    L+VL    NH+ +   
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 121 --TLYLSSSLRVLDLSYNHL 138
               +  SSL  L+L+ N  
Sbjct: 536 QELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 16/160 (10%)

Query: 11  SKLKVLNISKNCLKMLPSLNNEN-------RYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
             L  L I +  L  L    ++          +    L S  +  +   +       L +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC---- 119
                   P   + +   +      G    S  +      P L  L L  N L+      
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-----PSLEFLDLSRNGLSFKGCCS 366

Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
            + + ++SL+ LDLS+N +  ++ N L  +QL++LD   +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 7   LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
               S L+VL ++ N  +   LP +  E R L  L L+   L  + P   N    L  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNHLT-SCP 120
           +++N   SL        + ++ L  S N I +     +      L  L L  N    +C 
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

Query: 121 TLYLSSSLRVLDLSYNHLERL 141
                  ++        +ER+
Sbjct: 561 HQSFLQWIKDQRQLLVEVERM 581

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (11%)

Query: 6   FLQNSSKLKVLNISKNCLKML--PSLNNENRYLEKLYLTSNALTDIGP--LNKCRQL--- 58
            + +   LK LN++ N ++    P   +    LE L L+SN +  I    L    Q+   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 59  -NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHL 116
             +L ++ N +  +          + +L L  N  S ++  T  Q    L V RL     
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 117 TSCPTLYLSS-----SLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNPRLHV 164
            +   L          L  L +    L  L+               +    +       V
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 165 DPNHF 169
               +
Sbjct: 298 KDFSY 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 6   FLQNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDIGPLN-KCRQLN 59
           +  N + L+ L++S N ++ +       L+        L L+ N +  I P   K  +L+
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 60  TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSWPHLRVLRLHSNH 115
            L +  N  + ++   CI   + +E   L      +  N       +   L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 116 LTSCPTLYLS--------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN 167
           L                 +++    L    +ER+   +      Q+L++           
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQFPTL 322

Query: 168 HFKSYRSYVRVYIQL 182
             KS +       + 
Sbjct: 323 KLKSLKRLTFTSNKG 337

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 87  LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
                   +P+ +P      + L L  N L    +        L+VLDLS   ++ +   
Sbjct: 14  CMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
                  L  L ++GNP   +    F  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSG 98

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 9e-17
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAY 65
           L   ++L  LN+ +  L  L         L  L L+ N L  +         L  L V++
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT  P   L+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 126 --SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
              +L  L L  N L  +         L +  + GNP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 8   QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAY 65
              +    +N  K  L  LP   +  +    L+L+ N L       L    +L  L++  
Sbjct: 7   SKVASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
             +T L          +  L LS N + SLP  + Q+ P L VL +  N LTS P   L 
Sbjct: 65  AELTKLQ--VDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 126 S--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
               L+ L L  N L+ L    L P  +L+ L ++ N
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 49  IGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRV 108
           I  ++K      ++     +T+LP + +    +   L LS N + +        +  L  
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPD-LPK--DTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGN 159
           L L    LT          L  LDLS+N L+  +L  L      L  LDVS N
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFN 110

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 9e-17
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNE---------NRYLEKLYLTSNALTDIGP---LNK 54
           L+   +++++N++ N       L ++            ++ +Y+  N L        L K
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
            ++L  L   YN +         +  ++  L L+ N I+ +P         +  L    N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 115 HLTSCPTLYLS---SSLRVLDLSYNHLERLNLNTLIP--------KQLQYLDVSGN 159
            L   P ++ +   S +  +D SYN +  ++     P          +  +++S N
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 51/217 (23%)

Query: 5   LFLQNSSKLKVLNISKN--------CLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNK 54
              ++ S +  ++ S N            L     +   +  + L++N ++       + 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 55  CRQLNTLHVAYNAITSLPDN-------CISAWSEMEELVLSGNGISSLPNTIP-QSWPHL 106
              L+++++  N +T +P N              +  + L  N ++ L +     + P+L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 107 RVLRLHSNHLTSCPT----------LYLS---------------------SSLRVLDLSY 135
             + L  N  +  PT            +                       SL  L +  
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 136 NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY 172
           N + ++N        +  LD+  NP + +D ++   Y
Sbjct: 576 NDIRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 21/178 (11%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDIGP---------LNK 54
           F   + +++ L+ + N LK +P++ +      +  +  + N +  +             K
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS-------WPHLR 107
              +++++++ N I+  P    S  S +  + L GN ++ +P    +           L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 108 VLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
            + L  N LT             L  +DLSYN   +     L    L+   +      
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 7e-13
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN--------RYLEKLYLTSNALTDIGP---LNKC 55
               S L  +N+  N L  +P  + ++          L  + L  N LT +         
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 56  RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSW---PHLRVL 109
             L  + ++YN+ +  P       S ++   +     +         P+     P L  L
Sbjct: 513 PYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
           ++ SN +       ++ ++ VLD+  N    ++L+ + P  +     +  +
Sbjct: 572 QIGSNDIRKVNEK-ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH 62
           ++   + + K   +    N +  +         L + Y+ ++          C      +
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI---CEAWENEN 231

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
             Y       D       ++ ++ +        LP  +    P ++++ +  N   S   
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQ 290

Query: 122 LYLS----------SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
           L               ++++ + YN+L+   + T +   K+L  L+   N
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 19/185 (10%), Positives = 60/185 (32%), Gaps = 34/185 (18%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS----------LNNENRYLEKLYLTSNALTDIGPLNKCR 56
           +   ++L+VL +  +  K+             +++E +   +++     +      +   
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED-FS 159

Query: 57  QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
            L    +  +              +  ++    N I+ +   + +    LR   + ++  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF 218

Query: 117 TSCP--------TLYLSSSLRVLDLSYNHLERL--------NLNTLIP------KQLQYL 154
            +              +   +  DL +++L+ L           T +P       ++Q +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 155 DVSGN 159
           +V+ N
Sbjct: 279 NVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYL------TSNALTDIGP--LNKC 55
           +        L  +++S N     P+    +  L+   +        N      P  +  C
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 56  RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
             L  L +  N I  + +        +  L +  N   S+  +    +    +  L  + 
Sbjct: 566 PSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 116 LTSCP 120
                
Sbjct: 623 TQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 22/186 (11%), Positives = 44/186 (23%), Gaps = 30/186 (16%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP---LNKCRQLNTLH 62
           L ++ ++  L++                  LE L L S+                  +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-----QSWPHLRVLRLHSNHLT 117
                        +      +   L  + I+S P         +       +   SN++T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 118 SCP-TLYLSSSLRVLDLSYNH--------------LERLNLNTLIP------KQLQYLDV 156
                +   + LR   +  +                E               K L  ++V
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 157 SGNPRL 162
              P L
Sbjct: 257 YNCPNL 262

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 11/143 (7%)

Query: 28  SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCI-SAWSEMEE 84
           SLN+  R +  L L     +   P  + +  +L  L +  +              S    
Sbjct: 76  SLNSNGR-VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 85  LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLN 144
                        T     P      L  + + S P          + L    + +L+ N
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 145 -TLIPK------QLQYLDVSGNP 160
            T + K      +L+   +  +P
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSP 217

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 34  RYLEKLYLTSNALTDIGP---LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90
            Y   L L+ N L+ +       +   L++L +++N +  +          +  L LS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 91  GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP 148
            + +L   +      L VL L++NH+           + L+ L LS N + R  +  +  
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 149 ----KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQL 182
                +L  LD+S N    +     +   ++V+  + L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 6e-15
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGP--LNKCRQLNTLHVAY 65
            S   +L++S N L  L +     R   L  L L+ N L  I          L  L ++ 
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----- 120
           N + +L +   S    +E L+L  N I  +     +    L+ L L  N ++  P     
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 121 TLYLSSSLRVLDLSYNHLERL---NLNTLIPKQLQYLDVSGNP 160
                  L +LDLS N L++L   +L  L       L +  NP
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 27/154 (17%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
             +   L+VL +  N + ++                              QL  L+++ N
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDR---------------------NAFEDMAQLQKLYLSQN 146

Query: 67  AITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWPHL--RVLRLHSNHLT-SCP 120
            I+  P   I   +++     L LS N +  LP T  Q  P      L LH+N L   C 
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206

Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYL 154
              L S  +   LS     + +L  +  K+L  +
Sbjct: 207 LYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 28/197 (14%)

Query: 6   FLQNSSKLKVLNISKNCLKMLP----------------SLNNENRYLEKLYLTSNALTDI 49
             +   KL+ L++  N L  +                 +L   N     ++L+ N L ++
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 50  GPLN---KCRQLNTLHVAYNAITSLPDNCISAWSE-MEELVLSGNGI-----SSLPNTIP 100
             L    +   L  L +  N  +S   +   + +  +E+L L  N +     + L   + 
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSG 158
           +   HL+VL L+ N+L S P    S  ++LR L L+ N L  L+ N L P  L+ LD+S 
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR 535

Query: 159 NPRLHVDPNHFKSYRSY 175
           N  L  +P+ F S    
Sbjct: 536 NQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
            S ++ L++S   +  L S   E  + L+ L L  N +  I          L  L+++YN
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            +  L  +      ++  + L  N I+ + +   +    L+ L L  N LT+   +    
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI---P 381

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
           S+  + LS N L  L    L       + +S N   ++D  +F
Sbjct: 382 SIPDIFLSGNKLVTLPKINL---TANLIHLSENRLENLDILYF 421

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 21/157 (13%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
           FL     L++L +++N           +EN  LE+L+L  N L                 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------------ 468

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
                T L  +     S ++ L L+ N ++SLP  +      LR L L+SN LT      
Sbjct: 469 -----TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
           L ++L +LD+S N L   N +      L  LD++ N 
Sbjct: 524 LPANLEILDISRNQLLAPNPDVF--VSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 7   LQNSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
            +    LKVLN++ N +  +          L+ L L+ N L ++         ++  + +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---------------TIPQSWPHLRV 108
             N I  + D       +++ L L  N ++++                 T+P+      +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405

Query: 109 LRLHSNHLTSCPTLYLS---SSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
           + L  N L +   LY       L++L L+ N     + +        L+ L +  N
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGI 92
            E+L L+ N +  +         QL  L +       ++          +  L L  + I
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 93  SSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLSSSLRVLDLSYNHLERLNLNTLIP 148
             L     Q   HL  LRL+   L+             +L  LDLS N +  L L+    
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 149 --KQLQYLDVSGNPRLHVDPNHFKS 171
               L+ +D S N    V  +  + 
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEP 170

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 29/194 (14%)

Query: 7   LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTL 61
            +N   L++L++  + +  L         +L +L L    L+D     G     + L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 62  HVAYNAITSLPDN-CISAWSEMEELVLSGNGISSLPNTI--PQSWPHLRVLRLHSNHLTS 118
            ++ N I SL  +      + ++ +  S N I  +      P     L    L +N L S
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 119 --------CPTLYLSSSLRVLDLSYNHLERLNLNTLI-------------PKQLQYLDVS 157
                   C   + +  L +LD+S N                           +      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 158 GNPRLHVDPNHFKS 171
            +     D N F  
Sbjct: 249 FHNIKDPDQNTFAG 262

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 4e-13
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 12/176 (6%)

Query: 8   QNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALT---DIGPLNKCRQLNTLHV 63
           Q  +  + L +S N ++ + + +      L+ L L S       D         L  L +
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISS--LPNTIPQSWPHLRVLRLHSNHLTS--- 118
             + I  L  +       + EL L   G+S   L +   ++   L  L L  N + S   
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 119 CPTLYLSSSLRVLDLSYNHLERLN---LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
            P+    +SL+ +D S N +  +    L  L  K L +  ++ N         +  
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 7   LQNSSKLKVLNISKNCLKML--PSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
                +L++L +      +            L  L L S+ +  + P        L  L 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 63  VAYNAITS--LPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSC 119
           + +  ++   L D        +  L LS N I SL  +        L+ +   SN +   
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 120 PTLYLSS----SLRVLDLSYNHLERLN-------LNTLIPKQLQYLDVSGNPRLHVDPNH 168
               L      +L    L+ N L           +N      L+ LDVSGN        +
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

Query: 169 F 169
           F
Sbjct: 224 F 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 31/199 (15%)

Query: 7   LQNSSKLKVLNISKNCLK---MLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
            Q    L  L +    L    +        + L +L L+ N +  +       K   L +
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 61  LHVAYNAITSLPDNCISAWSEM--EELVLSGNGISSLPNTIPQSWP------HLRVLRLH 112
           +  + N I  + ++ +            L+ N + S  +              L +L + 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 113 SNHLTSCPT--------------LYLSSSLRVLDLSYNHLERLNLNT---LIPKQLQYLD 155
            N  T   T              L L+  +      +++++  + NT   L    +++LD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 156 VSGNPRLHVDPNHFKSYRS 174
           +S      ++   F++ + 
Sbjct: 273 LSHGFVFSLNSRVFETLKD 291

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNN--ENRYLEKLYLTSNALTDIGPLN----KCRQLN 59
           + +N   L  L++SKN ++ L    +  +   L+ +  +SN +  +        + + L+
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 60  TLHVAYNAITSLPDNCISAWSE------MEELVLSGNGISSLP-----NTIPQS------ 102
              +A N++ S                 +E L +SGNG +        N I +S      
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 103 -WPHLRVLRLHSNHLTSCPTLYLS----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV 156
              H+       +++        +    SS+R LDLS+  +  LN       K L+ L++
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 157 SGNPRLHVDPNHFKS 171
           + N    +    F  
Sbjct: 298 AYNKINKIADEAFYG 312

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.1 bits (182), Expect = 5e-16
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 11  SKLKVLNISKNCLKMLPSL-NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
           S + + N + +  +M+  L  ++      L  ++N LTD          +L TL +  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 68  ITSLPDNC--ISAWSEMEELVLSGNGISSLPNTIPQSWP-HLRVLRLHSNHLTSCPTLYL 124
           +  L       +    +++L +S N +S        SW   L  L + SN LT      L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
              ++VLDL  N ++ +    +  + LQ L+V+ N    V    F    S
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 14/162 (8%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
            + LQ     +  + S   LK L         + ++                  +N  + 
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKAL--------SIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
             +    +   C S  S    L  S N ++            L  L L  N L     + 
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

Query: 124 LS----SSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
                  SL+ LD+S N +            K L  L++S N
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 58  LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
              L+++ N I+ L  + I + S++  L++S N I  L  ++ +    L  L L  N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGN 159
                    +L+ LDLS+N  + L +        QL++L +S  
Sbjct: 83  KISCHPT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
              L ++ N ++++    +    +L  L +++N I  L  +      E+E L LS N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS---SLRVLDLSYNHLERLNLNTLIPKQ 150
            +         +L+ L L  N   + P          L+ L LS  HLE+ ++  +    
Sbjct: 83  KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 151 LQYLDVSGNPRLHVDPN 167
           +  + +          +
Sbjct: 140 ISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 11  SKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT 69
           SKL++L IS N ++ L       N+ LE L L+ N L  I   +    L  L +++NA  
Sbjct: 45  SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFD 103

Query: 70  SLPDN-CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
           +LP        S+++ L LS   +              +VL +                 
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 129 RVLDLSYNHLERLNLNTLIPKQLQYL 154
               L          + ++   ++ +
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTV 189

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
             L+ L+IS+N +       + +    L  L ++SN LTD        ++  L +  N I
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
            S+P   +     ++EL ++ N + S+P+ I      L+ + LH+N
Sbjct: 434 KSIPKQVVKL-EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 6e-16
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           ++   L +++  L  LP        +  L +T NAL  +  L     L  L    N +++
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALISLPELPA--SLEYLDACDNRLST 114

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LP+      + ++ L +  N ++ LP         L  +   +N LT  P   L +SL V
Sbjct: 115 LPEL----PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTMLPE--LPTSLEV 164

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           L +  N L  L     +P+ L+ LDVS N
Sbjct: 165 LSVRNNQLTFL---PELPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
            ++ VL I++N L  LP L      LE L    N L+ +  L     L  L V  N +T 
Sbjct: 80  PQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM 134

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LP+      + +E +    N ++ LP         L VL + +N LT  P   L  SL  
Sbjct: 135 LPE----LPALLEYINADNNQLTMLPELPT----SLEVLSVRNNQLTFLPE--LPESLEA 184

Query: 131 LDLSYNHLERL----NLNTLIPKQLQYLDVSGN 159
           LD+S N LE L      N    +   +     N
Sbjct: 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           + LK L++  N L MLP L      LE +   +N LT +        L  L V  N +T 
Sbjct: 120 ASLKHLDVDNNQLTMLPELPAL---LEYINADNNQLTML--PELPTSLEVLSVRNNQLTF 174

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQ---SWPHLRVLRLHSNHLTSCP-TLYLSS 126
           LP+   S    +E L +S N + SLP    +   S       R   N +T  P  +    
Sbjct: 175 LPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
               + L  N L      +L  +  Q           +    
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           S+    N          S  ++           N    +       Q + L +    ++S
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
           LPD   +   ++  L ++ N + SLP         L  L    N L++ P   L +SL+ 
Sbjct: 74  LPD---NLPPQITVLEITQNALISLPELPAS----LEYLDACDNRLSTLPE--LPASLKH 124

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           LD+  N L  L     +P  L+Y++   N
Sbjct: 125 LDVDNNQLTMLP---ELPALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 9/141 (6%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALT----DIGPLNKCRQLNT-LHVAY 65
           + L+VL++  N L  LP L      LE L +++N L          +   +         
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N IT +P+N I +      ++L  N +SS                    + +       +
Sbjct: 217 NRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 126 SSLRVLDLSYNHLERLNLNTL 146
               + D           + +
Sbjct: 276 LHRPLADAVTAWFPENKQSDV 296

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
             N+ + + L++    + ++ +L       + +  + N +  +      R+L TL V  N
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCP----- 120
            I  + +    A  ++ EL+L+ N +  L +  P  S   L  L +  N +T+       
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 134

Query: 121 TLYLSSSLRVLD 132
            +Y    +RVLD
Sbjct: 135 VIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 41  LTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP 100
           LT+  +          +   L +    I  + +N  +   + + +  S N I  L     
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF-- 60

Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP----KQLQYL 154
                L+ L +++N +         +   L  L L+ N L    L  L P    K L YL
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSLTYL 118

Query: 155 DVSGNPRLHVDPNHFKSYRSYV 176
            +  NP       + K YR YV
Sbjct: 119 CILRNP-----VTNKKHYRLYV 135

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 30/171 (17%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           LQNSS LK++++  N LK LP L      LE +   +N L ++  L     L  ++   N
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELPELQNLPFLTAIYADNN 205

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSWPHLRV 108
           ++  LPD  +S    +E +V   N +  LP                   T+P   P L  
Sbjct: 206 SLKKLPDLPLS----LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261

Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           L +  N+LT  P   L  SL  LD+S N    L   + +P  L YL+ S N
Sbjct: 262 LNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL---SELPPNLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 32/176 (18%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTL 61
             L      +   L ++   L  LP       +LE L  + N+LT++       + L   
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSW 103
           +    A++ LP         +E L +S N +  LP                    +P   
Sbjct: 120 NNNLKALSDLPPL-------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172

Query: 104 PHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           P L  +   +N L   P L     L  +    N L++L      P  L+ +    N
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L+ +    N L+ LP L N   +L  +Y  +N L  +  L     L  L+V  N +T 
Sbjct: 215 LSLESIVAGNNILEELPELQN-LPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD 271

Query: 71  LPDNCISAWSEMEELVLSGNGISSLP-------------NTIPQSWPHLRVLRLHSNHLT 117
           LP+    + + ++      +G+S LP              ++    P L  L + +N L 
Sbjct: 272 LPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
             P   L   L  L  S+NHL  +     +P+ L+ L V  NP
Sbjct: 331 ELPA--LPPRLERLIASFNHLAEV---PELPQNLKQLHVEYNP 368

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 38/180 (21%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL---------------NKC 55
           + L+      + L  +P      +   + Y   +      P                   
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 56  RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP----------------NTI 99
           RQ + L +    ++SLP+        +E LV S N ++ LP                  +
Sbjct: 71  RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 100 PQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
               P L  L + +N L   P L  SS L+++D+  N L++L      P  L+++    N
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 33/178 (18%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L  L++S+N    L  L      L  L  +SN +  +  L     L  L+V+ N +  
Sbjct: 277 QSLTFLDVSENIFSGLSELPPN---LYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE 331

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL-------- 122
           LP         +E L+ S N ++ +P        +L+ L +  N L   P +        
Sbjct: 332 LPALP----PRLERLIASFNHLAEVPELPQ----NLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 123 ---------YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
                     L  +L+ L +  N L        IP+ ++ L ++    +       ++
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREF---PDIPESVEDLRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L+ LN+S N L  LP+L      LE+L  + N L ++  L   + L  LHV YN +  
Sbjct: 317 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE 371

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
            PD        +E+L ++ + ++ +P        +L+ L + +N L   P   +  S+  
Sbjct: 372 FPDIP----ESVEDLRMN-SHLAEVPELPQ----NLKQLHVETNPLREFPD--IPESVED 420

Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
           L ++   +                DV  +   H
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 30  NNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEM------ 82
           N  N +L++    S+ LT++       +     + A++              EM      
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 83  -------EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLRVLDLS 134
                   EL L+  G+SSLP       PHL  L    N LT  P L  S  SL V + +
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNN 122

Query: 135 YNHLERLNLNTLIPKQLQYLDVSGN 159
              L  L      P  L+YL VS N
Sbjct: 123 LKALSDL------PPLLEYLGVSNN 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
            +  S ++  N   + ++ L  +      L++L+L+ N ++D+ PL    +L  L V  N
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAGMQF-FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            + +L        + +  L L  N +    +       +L +L + +N L S   L   S
Sbjct: 96  RLKNLNG---IPSACLSRLFLDNNELRDTDSL--IHLKNLEILSIRNNKLKSIVMLGFLS 150

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
            L VLDL  N +     L  L  K++ ++D++G  
Sbjct: 151 KLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L++ +KL+ L++++N LK L  + +    L +L+L +N L D   L   + L  L +  N
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            + S+    +   S++E L L GN I++           +  + L      + P +    
Sbjct: 139 KLKSIVM--LGFLSKLEVLDLHGNEITNTGGL--TRLKKVNWIDLTGQKCVNEP-VKYQP 193

Query: 127 SLRVLDLSYN 136
            L + +   +
Sbjct: 194 ELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 36  LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
             K  L   ++TD+    +   +   +   + I SL    +  ++ ++EL LS N IS L
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDL 78

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
                +    L  L ++ N L +   +   + L  L L  N L    +L  L  K L+ L
Sbjct: 79  SPL--KDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHL--KNLEIL 133

Query: 155 DVSGN 159
            +  N
Sbjct: 134 SIRNN 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           +Q  + L  L +  N +  L  L N    + +L L+ N L ++  +   + + TL +   
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKN-LTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT +    ++  S ++ L L  N I+++         +L+ L + +  ++    L   S
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
            L  L    N +  +  L +L    L  + +  N 
Sbjct: 174 KLTTLKADDNKISDISPLASL--PNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           +     +K L+++   +  +  L      L+ LYL  N +T+I PL     L  L +   
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            ++ L    ++  S++  L    N IS +      S P+L  + L +N ++    L  +S
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTS 217

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
           +L ++ L+   +   N        L   +V   P
Sbjct: 218 NLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
              +   +  L+     +  +  +      L  L L  N +TD+ PL    ++  L ++ 
Sbjct: 36  TQADLDGITTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N + ++    I+    ++ L L+   I+ +         +L+VL L  N +T+   L   
Sbjct: 95  NPLKNVSA--IAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNISPLAGL 150

Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           ++L+ L +    +  L  L  L   +L  L    N
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANL--SKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 8/154 (5%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
               +    +   K+ +    +  + +  +  L      +T I  +     L  L +  N
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            IT L    +   +++ EL LSGN + ++          ++ L L S  +T    L   S
Sbjct: 74  QITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
           +L+VL L  N +  +  L  L    LQYL +   
Sbjct: 130 NLQVLYLDLNQITNISPLAGL--TNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L   + L+ L+I    +  L  L N    L  L    N ++DI PL     L  +H+  N
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLAN-LSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I+ +    ++  S +  + L+   I++ P     +     V++  S    +  T+  + 
Sbjct: 206 QISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

Query: 127 SLRVLDLSYNHLERLN 142
           +    +L++N    +N
Sbjct: 264 TYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 43  SNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS 102
             A+  I P         +    + +T       +    +  L   G G++++     Q 
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV--QY 61

Query: 103 WPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
             +L  L L  N +T    L   + +  L+LS N L+ +  +  L  + ++ LD++  
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL--QSIKTLDLTST 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 25/177 (14%)

Query: 13  LKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY 65
            K L++S N L+ L      S       L+ L L+   +  I  G       L+TL +  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT---- 121
           N I SL     S  S +++LV     ++SL N        L+ L +  N + S       
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 122 --LYLSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
             L   ++L  LDLS N ++ +    L     +P     LD+S NP   + P  FK 
Sbjct: 146 SNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 11  SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
            +L+VL++S+  ++ +       L++    L  L LT N +  +  G  +    L  L  
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSH----LSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPT- 121
               + SL +  I     ++EL ++ N I S        +  +L  L L SN + S    
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 122 -----LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
                  +      LDLS N +  +        +L+ L +  N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 11  SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
           S L  L ++ N ++ L       L++    L+KL      L  +   P+   + L  L+V
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSS----LQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 64  AYNAITSLPDNCISAW-SEMEELVLSGNGISSLPNTIPQSWPHLRV----LRLHSNHLTS 118
           A+N I S       +  + +E L LS N I S+  T  +    + +    L L  N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 119 CPTLYLSS-SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                     L+ L L  N L+ +          LQ + +  NP
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 8   QNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI---GPLNKCRQLN 59
              S L+ L   +  L  L +     L      L++L +  N +         +    L 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKT----LKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 60  TLHVAYNAITSLPDNCISAWSEME----ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
            L ++ N I S+    +    +M      L LS N ++ +     +    L+ L L +N 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQ 211

Query: 116 LTSCP--TLYLSSSLRVLDLSYN 136
           L S P       +SL+ + L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 9   NSSKLKVLNISKNCLKMLPSL---NNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
           ++S     +      K   +      E   ++   L+ + +  +     +    L  L +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
           A N I  + DN     + + +L LS N + S+ + + ++   L VL L  NH+ +     
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
                +L+ L L  N L+ +          LQ + +  NP
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 41/192 (21%), Positives = 56/192 (29%), Gaps = 32/192 (16%)

Query: 8   QNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI----GPLNKCRQL 58
           +  S L +L +  N    L       L N    LE L LT   L               L
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLAN----LEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 59  NTLHVAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTI--PQSWPHLRVLRLHSNH 115
             L +  N I  + P +          L L+ N + S+           H  +LRL S  
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 116 LTSCPTLYLSS----------SLRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGN 159
           L      +L            S+  LDLS N  +        +       Q   L  S N
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 160 PRLHVDPNHFKS 171
                   +FK 
Sbjct: 252 MGSSFGHTNFKD 263

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAI-TSLPDNCISAWSEMEELVLSGNGI 92
           +  + L+ N++ ++     ++ + L  L V        + +N     S +  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 93  SSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLSSSLRVLDLSYNHLERLNLNTLIP 148
             L         +L VL L   +L             +SL +L L  N+++++   +   
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 149 K--QLQYLDVSGNP 160
              +   LD++ N 
Sbjct: 152 NMRRFHVLDLTFNK 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 8   QNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60
            + + L+ L +++N +  +       L +    L KL L+ N L  I         +L  
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTH----LLKLNLSQNFLGSIDSRMFENLDKLEV 351

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SC 119
           L ++YN I +L D        ++EL L  N + S+P+ I      L+ + LH+N    SC
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411

Query: 120 PT-LYLSSSLR 129
           P   YLS  L 
Sbjct: 412 PRIDYLSRWLN 422

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 21/153 (13%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
            L L     L    +S N  K L SL       E L L  N +  I P       R+ + 
Sbjct: 107 VLTL-TQCNLDGAVLSGNFFKPLTSL-------EMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 61  LHVAYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWP--------HLRVLR 110
           L + +N + S+ +  +          L LS   +  +                  +  L 
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 111 LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
           L  N            ++    +    L     
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-15
 Identities = 44/168 (26%), Positives = 60/168 (35%), Gaps = 13/168 (7%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPL------NKCR 56
           EL       LKVL+I++                L  L L+ N       L       K  
Sbjct: 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 57  QLNTLHVAYNAITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWP-HLRVLRLH 112
            L  L +    + +    C +  +     + L LS N +          WP  L  L L 
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 113 SNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
              L   P   L + L VLDLSYN L+R      +P Q+  L + GNP
Sbjct: 262 FTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDIGP-----LNKC 55
            ++    L  L++S N       L +         L+ L L +  +              
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 56  RQLNTLHVAYNAITSLPDNCISAW-SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
            QL  L +++N++          W S++  L LS  G+  +P  +P     L VL L  N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYN 284

Query: 115 HLTSCPTLYLSSSLRVLDLSYNHL 138
            L   P+      +  L L  N  
Sbjct: 285 RLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 36  LEKLYLTSNALTDIGPLN----KCRQLNTLHVAYNAITSLPD--NCISAWSE--MEELVL 87
           L++L L +  +T   P          LN L++   +  +       +  W +  ++ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 88  SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS------SSLRVLDLSYNHLERL 141
           +     +      + +P L  L L  N       L  +       +L+VL L    +E  
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 142 NLN----TLIPKQLQYLDVSGN 159
           +           QLQ LD+S N
Sbjct: 217 SGVCSALAAARVQLQGLDLSHN 238

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 1   MALELFLQNSSKLKVLNISKNCLKMLP----SLNNENRYLEKLYLTSNALTDIGPLNKC- 55
           +   L       L+VL +    ++       +L      L+ L L+ N+L D      C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 56  --RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
              QLN+L++++  +  +P       +++  L LS N +   P   P   P +  L L  
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKG---LPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKG 305

Query: 114 NHLT 117
           N   
Sbjct: 306 NPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 15/149 (10%)

Query: 29  LNNENRYLEKLYLTSNALTDIGPLN------KCRQLNTLHVAYNAITSLPDNCISAWSEM 82
           L    R LE L    +   D+G           ++L        +        +   S +
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 83  EELVLSGNGIS--SLPNTIPQSWPHLRVLRLHSNHLTSCPTL------YLSSSLRVLDLS 134
           +EL L    ++  + P  +  + P L +L L +    +          +L   L+VL ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 135 YNHLERLNLNTLIP-KQLQYLDVSGNPRL 162
             H    +   +     L  LD+S NP L
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 11  SKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
           +++ +  +S +    +  +          L  T N  TD      +  ++L TL +  N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ---SWP-HLRVLRLHSNHLTSCPTLY 123
           + +           M  L      ++SL +       +W   + VL L SN LT      
Sbjct: 389 LKNFFK-VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
           L   ++VLDL  N +  +  +    + LQ L+V+ N    V    F    S
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 14/159 (8%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           +      +    S+  LK L   + +N+                  +   ++N   ++ +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFS--------KEALYSVFAEMNIKMLSIS 339

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL-YLS 125
               +   C  + S    L  + N  +        +   L+ L L  N L +   +  ++
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399

Query: 126 SSLRVLDLSYNHLERLN-----LNTLIPKQLQYLDVSGN 159
            ++  L+     L  LN           + +  L++S N
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
            L ++ N+I+ L    IS  SE+  L LS N I SL   +      L  L +  N L + 
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGNPRLHVDPNHFKS 171
               + +SLR LDLS+N  + L +        +L +L +S      +D      
Sbjct: 116 SCCPM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 36  LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
            + L L+ N+++++    ++   +L  L +++N I SL  +      ++E L +S N + 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL---SSSLRVLDLSYNHLERLNLNTLIPKQ 150
           ++          LR L L  N     P        + L  L LS     +L+L  +    
Sbjct: 114 NIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 151 LQYL 154
           L  +
Sbjct: 171 LSCI 174

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 11  SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT 69
           S+L+VL +S N ++ L   +   N+ LE L ++ N L +I        L  L +++N   
Sbjct: 76  SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCCPMASLRHLDLSFNDFD 134

Query: 70  SLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
            LP        +++  L LS      L         HL +  +  + ++       + SL
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 129 RVLDLSYNHLERLNLNTL 146
           ++ + +  HL     +  
Sbjct: 192 QIPNTTVLHLVFHPNSLF 209

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
             +  L      L  L S   +        +  L L+SN LT         ++  L +  
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
           N I S+P + ++    ++EL ++ N + S+P+ +      L+ + LH N
Sbjct: 460 NRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 11/153 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           ++  + L  L  + N +  L    N N  L  L   SN LT++  +    +L  L+   N
Sbjct: 60  IEKLTGLTKLICTSNNITTLDLSQNTN--LTYLACDSNKLTNL-DVTPLTKLTYLNCDTN 116

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            +T L    +S    +  L  + N ++ +  +       L  L  H N   +   +   +
Sbjct: 117 KLTKLD---VSQNPLLTYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLDVTPQT 170

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
            L  LD S+N +  L+++    K L  L+   N
Sbjct: 171 QLTTLDCSFNKITELDVSQN--KLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
            L +   +KL  LN   N L  L    N    L  L    N LT+I  ++   QL  L  
Sbjct: 99  NLDVTPLTKLTYLNCDTNKLTKLDVSQNPL--LTYLNCARNTLTEI-DVSHNTQLTELDC 155

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
             N   +  D  ++  +++  L  S N I+ L  +       L  L   +N++T    L 
Sbjct: 156 HLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITK-LDLN 209

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
            +  L  LD S N L  +++  L   QL Y D S NP   +D +    
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNPLTELDVSTLSK 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 11/168 (6%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
           +L +  +  L  LN ++N L  +   +N    L +L    N       +    QL TL  
Sbjct: 120 KLDVSQNPLLTYLNCARNTLTEIDVSHNTQ--LTELDCHLNKKITKLDVTPQTQLTTLDC 177

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
           ++N IT L    +S    +  L    N I+ L          L  L   SN LT      
Sbjct: 178 SFNKITELD---VSQNKLLNRLNCDTNNITKLDLN---QNIQLTFLDCSSNKLTEIDVTP 231

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
           L+  L   D S N L  L+++TL   +L  L       L +D  H   
Sbjct: 232 LTQ-LTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQ 276

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
            L L  ++ L  L    N L  L         L  L   +N LT +  +++   L  L+ 
Sbjct: 78  TLDLSQNTNLTYLACDSNKLTNLDVTPLTK--LTYLNCDTNKLTKL-DVSQNPLLTYLNC 134

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
           A N +T +    +S  +++ EL    N   +  +  PQ    L  L    N +T      
Sbjct: 135 ARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKITELDVSQ 189

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
               L  L+   N++ +L+LN     QL +LD S N
Sbjct: 190 N-KLLNRLNCDTNNITKLDLNQN--IQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 14/158 (8%)

Query: 9   NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
             SKL  L+  +  L  +   +N    L               +    QL  L      I
Sbjct: 252 TLSKLTTLHCIQTDLLEIDLTHNTQ--LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
           T L    +S   ++  L L+   ++ L          L+ L   + H+    ++    +L
Sbjct: 310 TELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPAL 363

Query: 129 RVLDLSYNHLERLNLNTLIPKQL------QYLDVSGNP 160
                +      +   TL    L        LD  GNP
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L  + +L  L+ S N L  +         L     + N LT++  ++   +L TLH    
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDVTPLTQ--LTYFDCSVNPLTEL-DVSTLSKLTTLHCIQT 264

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            +  +    ++  +++      G       +        L +L   +  +T         
Sbjct: 265 DLLEID---LTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGITELDLSQN-P 318

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
            L  L L+   L  L+++     +L+ L      
Sbjct: 319 KLVYLYLNNTELTELDVSHN--TKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 8   QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
            N +              +         L  L   ++++TD+  + K   L  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLAT--LTSLDCHNSSITDMTGIEKLTGLTKLICTSNN 75

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS 127
           IT+L    +S  + +  L    N +++L          L  L   +N LT          
Sbjct: 76  ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN-PL 128

Query: 128 LRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166
           L  L+ + N L  ++++     QL  LD   N ++    
Sbjct: 129 LTYLNCARNTLTEIDVSHN--TQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
           EL + ++++L +L+     +  L    N    L  LYL +  LT++  ++   +L +L  
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPK--LVYLYLNNTELTEL-DVSHNTKLKSLSC 346

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
               I       +     +     +     ++P     +      +          P   
Sbjct: 347 VNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPK 149
                 V D + N +   NL+T  P 
Sbjct: 405 EPGDGGVYDQATNTITWENLSTDNPA 430

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 38/182 (20%)

Query: 13  LKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY 65
            K L++  N L  LP      L      L  LYL  N L  +  G   + + L TL V  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTK----LRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----- 120
           N + +LP         + EL L  N + SLP  +  S   L  L L  N L S P     
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 121 ------TLYLSS---------------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158
                  L L +                L+ L L  N L+R+        ++L+ L +  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 159 NP 160
           NP
Sbjct: 215 NP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 11  SKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
           +KL  L++  N L+ LP      L +    L++L L +N L  +  G  +K  +L TL +
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTS----LKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGN 90
             N +  +P+    +  +++ L L  N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 37  EKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
            ++ L  N +  I P   +  ++L  + ++ N I+ L  +       +  LVL GN I+ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQL 151
           LP ++ +    L++L L++N +            +L +L L  N L+ +   T  P + +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 152 QYLDVSGNP 160
           Q + ++ NP
Sbjct: 155 QTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 11  SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
            KL+ +++S N +  L       L +    L  L L  N +T++          L  L +
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRS----LNSLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL 122
             N I  L  +       +  L L  N + ++          ++ + L  N     C   
Sbjct: 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171

Query: 123 YLSSSLR 129
           +L+  L 
Sbjct: 172 WLADYLH 178

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 80  SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNH 137
             + E+ L  N I  +P      +  LR + L +N ++           SL  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 138 LERLNLNTLIP-KQLQYLDVSGN 159
           +  L  +       LQ L ++ N
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNAN 114

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 5e-14
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 7   LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
           +     L+ L++S N     +P L +    L+ L ++ N L+      ++ C +L  L++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 64  AYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSC-- 119
           + N     +P         ++ L L+ N  +  +P+ +  +   L  L L  NH      
Sbjct: 255 SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 120 PTLYLSSSLRVLDLSYNHLE----RLNLNTLIPKQLQYLDVSGN 159
           P     S L  L LS N+         L  +  + L+ LD+S N
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 7   LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGPL-----NKCRQLNT 60
           +   ++LK+LNIS N     +P L  ++  L+ L L  N  T  G +       C  L  
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFT--GEIPDFLSGACDTLTG 298

Query: 61  LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT- 117
           L ++ N    ++P     + S +E L LS N  S  LP         L+VL L  N  + 
Sbjct: 299 LDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 118 SCPT--LYLSSSLRVLDLSYNHLE---RLNLNTLIPKQLQYLDVSGN 159
             P     LS+SL  LDLS N+       NL       LQ L +  N
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 39/188 (20%)

Query: 9   NSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
               L+ L++++N    ++   L+     L  L L+ N      P     C  L +L ++
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 65  YNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT----- 117
            N  +  LP + +     ++ L LS N  S  LP ++      L  L L SN+ +     
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 118 --------SCPTLYLS---------------SSLRVLDLSYNHLE---RLNLNTLIPKQL 151
                   +   LYL                S L  L LS+N+L      +L +L   +L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKL 444

Query: 152 QYLDVSGN 159
           + L +  N
Sbjct: 445 RDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 20/168 (11%)

Query: 6   FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNT 60
            L + + L+ L +S + +   +      +  L  L L+ N+L+        L  C  L  
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 61  LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTI--PQSWPHLRVLRLHSNHL 116
           L+V+ N +      +     + +E L LS N IS +             L+ L +  N +
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 117 TSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-----KQLQYLDVSGN 159
           +    +    +L  LD+S N     N +T IP       LQ+LD+SGN
Sbjct: 191 SGDVDVSRCVNLEFLDVSSN-----NFSTGIPFLGDCSALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 25/170 (14%)

Query: 7   LQNSSKLKVLNISKNCLK-MLPSLNN--ENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
            + S+ L  L++S+N L   + +L +      L+ L ++SN L   G      K   L  
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155

Query: 61  LHVAYNAIT-SLPDN--CISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHL 116
           L ++ N+I+ +            E++ L +SGN IS     +      +L  L + SN+ 
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNF 212

Query: 117 T-SCPTLYLSSSLRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGN 159
           +   P L   S+L+ LD+S N      L+           +L+ L++S N
Sbjct: 213 STGIPFLGDCSALQHLDISGN-----KLSGDFSRAISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 23/168 (13%)

Query: 6   FLQNSSKLKVLNISKNCL--KMLPSLNNEN--RYLEKLYLTSNALTDIGPLNKCRQLNTL 61
                + L+VL++S N +    +      +    L+ L ++ N ++    +++C  L  L
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205

Query: 62  HVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT-S 118
            V+ N  +  +P   +   S ++ L +SGN +S      I      L++L + SN     
Sbjct: 206 DVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGP 262

Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGN 159
            P L L  SL+ L L+ N          IP         L  LD+SGN
Sbjct: 263 IPPLPL-KSLQYLSLAEN-----KFTGEIPDFLSGACDTLTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 27/169 (15%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALT-----DIGPLNKCRQLN 59
           L + S LK LN+S N L     ++   +   LE L L++N+++          + C +L 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 60  TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQ--SWPHLRVLRLHSNHL 116
            L ++ N I+  +    +S    +E L +S N  S+    IP       L+ L +  N L
Sbjct: 182 HLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST---GIPFLGDCSALQHLDISGNKL 235

Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP----KQLQYLDVSGN 159
           +      +   + L++L++S N          IP    K LQYL ++ N
Sbjct: 236 SGDFSRAISTCTELKLLNISSN-----QFVGPIPPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 6   FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
            L N S+L  L++S N L   +PS       L  L L  N L    P  L   + L TL 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 63  VAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-- 118
           + +N +T  +P   +S  + +  + LS N ++  +P  I     +L +L+L +N  +   
Sbjct: 473 LDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNI 530

Query: 119 CPTLYLSSSLRVLDLSYNHL 138
              L    SL  LDL+ N  
Sbjct: 531 PAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 29/173 (16%)

Query: 6   FLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALT-----DIGPLNKCRQL 58
            L     LKVL++S N    ++  SL N +  L  L L+SN  +     ++    K   L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTL 396

Query: 59  NTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW---PHLRVLRLHSN 114
             L++  N  T  +P   +S  SE+  L LS N +S    TIP S      LR L+L  N
Sbjct: 397 QELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLN 452

Query: 115 HLTSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGN 159
            L       L    +L  L L +N L        IP        L ++ +S N
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTG-----EIPSGLSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 7   LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNTL 61
           L N + L  +++S N L   +P        L  L L++N+ +  G     L  CR L  L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS--GNIPAELGDCRSLIWL 543

Query: 62  HVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
            +  N    ++P        ++    ++G     + N         +      N L    
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKECHGAGNLLEFQG 598

Query: 121 TLYLS----SSLRVLDLSYNHLERLNLNTL-IPKQLQYLDVSGN 159
                    S+    +++          T      + +LD+S N
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 23/145 (15%)

Query: 33  NRYLEKLYLTSNALT-DIGPLNKC----RQLNTLHVAYNAIT-SLPDNCISAWSEMEELV 86
           +  +  + L+S  L      ++        L +L ++ + I  S+        + +  L 
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLD 106

Query: 87  LSGNGISSLPNTIPQSW-----PHLRVLRLHSNHLT---SCPTLYLSSSLRVLDLSYNHL 138
           LS N +S     +           L+ L + SN L            +SL VLDLS N +
Sbjct: 107 LSRNSLSG---PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 139 ERLNLNTLIP----KQLQYLDVSGN 159
              N+   +      +L++L +SGN
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 25/173 (14%)

Query: 6   FLQNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
           +++N    K  + + N L+         N         +TS           +    +  
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 61  LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR---VLRLHSNHL 116
           L ++YN ++  +P   I +   +  L L  N IS    +IP     LR   +L L SN L
Sbjct: 637 LDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISG---SIPDEVGDLRGLNILDLSSNKL 692

Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVS---GNPRL 162
                  +   + L  +DLS N+L        IP   Q +    +    NP L
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLS-----GPIPEMGQFETFPPAKFLNNPGL 740

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 16/161 (9%)

Query: 8   QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
              + +  +  + + +K +  +      +  L L  N L DI  L +   L  L +  N 
Sbjct: 38  NELNSIDQIIANNSDIKSVQGIQYLPN-VRYLALGGNKLHDISALKELTNLTYLILTGNQ 96

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS- 126
           + SLP+      + ++ELVL  N + SLP+ +     +L  L L  N L S P       
Sbjct: 97  LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156

Query: 127 -SLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
            +L  LDLSYN L+ L      P+       QL+ L +  N
Sbjct: 157 TNLTELDLSYNQLQSL------PEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 35/152 (23%)

Query: 37  EKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP--------------DNCISAW--- 79
            K  L   ++TD    N+   ++ +    + I S+                N +      
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81

Query: 80  ---SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLS 134
              + +  L+L+GN + SLPN +     +L+ L L  N L S P       ++L  L+L+
Sbjct: 82  KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 135 YNHLERLNLNTLIPK-------QLQYLDVSGN 159
           +N L+ L      PK        L  LD+S N
Sbjct: 142 HNQLQSL------PKGVFDKLTNLTELDLSYN 167

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 3   LELFLQNSSKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGPLNKCRQLNT 60
           LEL  +  S +K L +  +           + +  LE L   +  LT I  L K  +L  
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKK 68

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSC 119
           L ++ N ++   +        +  L LSGN I  L    P +   +L+ L L +  +T+ 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 120 P-----TLYLSSSLRVLD 132
                    L   L  LD
Sbjct: 129 NDYRENVFKLLPQLTYLD 146

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 11  SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTLH 62
             L+ L++S N L  L S     L++    L  L L  N    +G     +   +L  L 
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSS----LTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 63  VAYNA-ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
           V      T +     +  + +EEL +  + + S      +S  ++  L LH         
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 122 LYLS--SSLRVLDLSYNHLERLNLNTLIP---------KQLQYLDVSGNPRLHVDPNHFK 170
           +++   SS+  L+L    L+  + + L              + + ++      V     +
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 15/164 (9%)

Query: 11  SKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTSNA-LTDIGP--LNKCRQLNTLHVAY 65
           S L  LN+  N  K L   SL +    L+ L + +    T I          L  L +  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           + + S     + +   +  L+L       L          +  L L    L +     LS
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 126 S----------SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           +          + R + ++   L ++         L  L+ S N
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
           +  +K L++S N +  + + + +    L+ L LTSN +  I     +    L  L ++YN
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNH-LTSCPTLYL 124
            +++L  +     S +  L L GN   +L   ++      L++LR+ +    T       
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 125 SS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
           +    L  L++  + L+     +L   + + +L +     + +       
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
           C +      +  ++ S+P   ++    ++ L LS N I+ + N+  Q   +L+ L L SN
Sbjct: 30  CDRNGICKGSSGSLNSIPSG-LTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 115 HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
            + +    +     SL  LDLSYN+L  L+ +   P   L +L++ GNP
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRY-LEKLYLTSNALTDI----------GPLNKC 55
           L++   +  L +      +L  +  +    +E L L    L               L K 
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 56  RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
                + +   ++  +    ++  S + EL  S N + S+P+ I      L+ + LH+N 
Sbjct: 254 FTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 116 LT-SCPTL-YLSSSLR 129
              SCP + YLS  L 
Sbjct: 313 WDCSCPRIDYLSRWLN 328

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 22/145 (15%)

Query: 11  SKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
           + L+ L I  + L+        S+ N    +  L L       +    ++    +  L +
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQN----VSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 64  AYNAITSLPDNCISA--------WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
               + +   + +S               + ++   +  +   +      L  L    N 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSRNQ 288

Query: 116 LTSCP--TLYLSSSLRVLDLSYNHL 138
           L S P       +SL+ + L  N  
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPW 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 4   ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLH 62
            L          L +    L   P       +L+ + + +  L ++   + +   L TL 
Sbjct: 74  LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTI--------PQSWPHLRVLRLHS 113
           +A N + +LP + I++ + + EL +     ++ LP  +         Q   +L+ LRL  
Sbjct: 134 LARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 114 NHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
             + S P ++    +L+ L +  + L  L        +L+ LD+ G   L
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSL--NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHV 63
             NS+  ++   +   LK    L  +        L L S  L        +   L  + +
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCP-- 120
               +  LPD  +  ++ +E L L+ N + +LP +I      LR L +     LT  P  
Sbjct: 112 DAAGLMELPD-TMQQFAGLETLTLARNPLRALPASIAS-LNRLRELSIRACPELTELPEP 169

Query: 121 --------TLYLSSSLRVLDLSYNHLERL--NLNTLIPKQLQYLDVSGN 159
                         +L+ L L +  +  L  ++  L  + L+ L +  +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL--QNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 45/192 (23%)

Query: 11  SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY 65
           S L+ + I    L  LP            LE L L  N L  +   +    +L  L +  
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAG----LETLTLARNPLRALPASIASLNRLRELSIRA 159

Query: 66  -NAITSLPDN--------CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
              +T LP+                ++ L L   GI SLP +I     +L+ L++ ++ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPL 218

Query: 117 TSCP-TLYLSSSLRVLDLSYN--------------HLERLNLN-----TLIP------KQ 150
           ++    ++    L  LDL                  L+RL L        +P       Q
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 151 LQYLDVSGNPRL 162
           L+ LD+ G   L
Sbjct: 279 LEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 24/139 (17%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY-NAI 68
             L+ L +    ++ LP+     + L+ L + ++ L+ +GP ++   +L  L +    A+
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242

Query: 69  TSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNH-LTSCP-TLYLS 125
            + P       + ++ L+L   + + +LP  I      L  L L     L+  P  +   
Sbjct: 243 RNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 126 SSLRVLDLSYNHLERLNLN 144
            +  ++ +  +   +L+ +
Sbjct: 301 PANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 11  SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTS-NALTDIGP-LNKCRQLNTLHVA 64
             LK L I  + L  L      L      LE+L L    AL +  P       L  L + 
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPK----LEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 65  -YNAITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
             + + +LP + I   +++E+L L G   +S LP+ I Q  P   ++ +  +        
Sbjct: 262 DCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQH 319

Query: 123 YLSS 126
              +
Sbjct: 320 RPVA 323

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.5 bits (152), Expect = 7e-13
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 3   LELFLQNSSKLK--VLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNT 60
           LEL  +  + ++  VL+  K+    +  L  E   LE L L +  L  +  L K  +L  
Sbjct: 16  LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKK 75

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSC 119
           L ++ N I    D        +  L LSGN +  +    P +    L+ L L +  +T+ 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 120 PT-----LYLSSSLRVLD 132
                    L   L  LD
Sbjct: 136 NDYRESVFKLLPQLTYLD 153

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 37  EKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
            +L L +N  T +   G   K  QL  ++ + N IT + +      S + E++L+ N + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQ 150
           ++ + + +    L+ L L SN +T          SS+R+L L  N +  +          
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 151 LQYLDVSGNP 160
           L  L++  NP
Sbjct: 155 LSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 8   QNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60
           +   +L+ +N S N +  +        +     + ++ LTSN L ++          L T
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASG----VNEILLTSNRLENVQHKMFKGLESLKT 109

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SC 119
           L +  N IT + ++     S +  L L  N I+++      +   L  L L +N    +C
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169

Query: 120 PTLYLSSSLR 129
              +L   LR
Sbjct: 170 YLAWLGEWLR 179

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNT-IPQSWPHLRVLRLHSNHLTSCP--TLYLS 125
             +P++ I       EL L+ N  + L  T I +  P LR +   +N +T         +
Sbjct: 24  NKIPEH-IPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 126 SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
           S +  + L+ N LE +        + L+ L +  N
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 5/152 (3%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
           + L  + ++   +  L  +   +  ++ L + +   T+  P++    L  L +    +TS
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHN-IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLR 129
                +S  + +  L +S +       T   + P +  + L  N  +T    L     L+
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162

Query: 130 VLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
            L++ ++ +     +      +L  L      
Sbjct: 163 SLNIQFDGVHDYRGIEDF--PKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVA 64
           ++ +  +K L I+         ++     LE+L +    +T   I  L+    L  L ++
Sbjct: 62  IEYAHNIKDLTINNIHATNYNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
           ++A        I+   ++  + LS NG  +    + ++ P L+ L +  + +     +  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIED 179

Query: 125 SSSLRVLDLSYNHL 138
              L  L      +
Sbjct: 180 FPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 29/130 (22%)

Query: 36  LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
           L  + L +  +TD+  +     +  L +     T+                   N IS L
Sbjct: 46  LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY------------------NPISGL 87

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQ 152
            N        L  LR+    +TS     LS  +SL +LD+S++  +   L  +    ++ 
Sbjct: 88  SN--------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 153 YLDVSGNPRL 162
            +D+S N  +
Sbjct: 140 SIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVA 64
           L   + L +L+IS +               +  + L+ N  +TDI PL    +L +L++ 
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSL 95
           ++ +       I  + ++ +L      I   
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTD--IGPLNKCRQLNTLH 62
            +   S L+ L I    +      N      L  L ++ +A  D  +  +N   ++N++ 
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
           ++YN   +     +    E++ L +  +G+        + +P L  L   S  +  
Sbjct: 143 LSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGG 195

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 1   MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNT 60
           + + L ++    L     +      L +++           +   L +     +   +  
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           LH+A+  +T L    +     +  L LS N + +LP  +      L VL+   N L +  
Sbjct: 446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVD 502

Query: 121 TLYLSSSLRVLDLSYNHLERL----NLNTLIPKQLQYLDVSGNP 160
            +     L+ L L  N L++      L +    +L  L++ GN 
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSC--PRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 5e-11
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L+    +  L++S N L+ LP      R LE L  + NAL ++  +    +L  L +  N
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518

Query: 67  AITSLPD-NCISAWSEMEELVLSGNGISSLPN---TIPQSWPHLRVL 109
            +        + +   +  L L GN +         + +  P +  +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 5/155 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA--LTDIGPLNKCRQLNTLHVA 64
                +L    +S     +L S     + L++L   +    LT I  +     L      
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
               ++L        +   + + S   + +    +   +  +RVL L    LT    L  
Sbjct: 405 LQYFSTL-KAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCHLEQ 461

Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
              +  LDLS+N L  L       + L+ L  S N
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 28/168 (16%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 13  LKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVA-YNA 67
              L      L+++     +    LEK+ ++ N + ++      +   +L+ + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 68  ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCPT---LY 123
           +  +          ++ L++S  GI  LP+          +L +  N ++ +      + 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL-HVDPNHFK 170
           LS    +L L+ N ++ ++ +     QL  L++S N  L  +  + F 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNA-LTDIGP---LNKCRQLNTL 61
            QN   L+ L IS   +K LP ++  +      L +  N  +  I     +    +   L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
            +  N I  + ++  +     E  +   N +  LPN +        +L +    + S P+
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
             L +  ++   S  +L++L     +   L    ++  
Sbjct: 220 YGLENLKKLRARSTYNLKKLPTLEKLVA-LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 33/143 (23%)

Query: 51  PLNKCR-QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
               C           + +T +P + +       EL      +  +       +  L  +
Sbjct: 3   HHRICHCSNRVFLCQESKVTEIPSD-LPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKI 59

Query: 110 RLHSN------------HLTSCPTLYLS----------------SSLRVLDLSYNHLERL 141
            +  N            +L     + +                  +L+ L +S   ++ L
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 142 NLNTLIP-KQLQYLDVSGNPRLH 163
                I   Q   LD+  N  +H
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIH 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 37  EKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
           EKL L S  L  +         +L  L++ YN + +L        +E+  L L+ N ++S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERL 141
           LP  +      L  L L  N L S P+        L+ L L+ N L+ +
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 29/169 (17%)

Query: 16  LNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNC 75
           L+     ++ + +  +  +  + L L++N +  I  L+    L  L +  N I  + +N 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENL 88

Query: 76  ISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY 135
            +    +EEL +S N I+SL                    +          +LRVL +S 
Sbjct: 89  DAVADTLEELWISYNQIASLSG------------------IEKLV------NLRVLYMSN 124

Query: 136 NHLERLN-LNTLIP-KQLQYLDVSGNP--RLHVDPNHFKSYRSYVRVYI 180
           N +     ++ L    +L+ L ++GNP    + + N    YR  V   +
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 22/92 (23%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L     L++L++ +N +K + +L+     LE+L+++ N +  +  + K   L  L+++ N
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 67  AITSLPD-NCISAWSEMEELVLSGNGISSLPN 97
            IT+  + + ++A  ++E+L+L+GN + +   
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 28/173 (16%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 13  LKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSN-ALTDIGP--LNKCRQLNTLHVA 64
            + L + +  L+ +PS     L N    + ++Y++ +  L  +         ++  + + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPN----ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 65  YN-AITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSN-HLTSCPT 121
               +T +  + +     ++ L +   G+   P+ T   S     +L +  N ++TS P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 122 ---LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL-HVDPNHFK 170
                L +    L L  N    +        +L  + ++ N  L  +D + F 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 8   QNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
            N SK+  + I     L  +       L      L+ L + +  L     L K    +  
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPL----LKFLGIFNTGLKMFPDLTKVYSTDIF 132

Query: 62  HVAY----NAITSLPDNCISA-WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-H 115
            +        +TS+P N      +E   L L  NG +S+          L  + L+ N +
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKY 191

Query: 116 LTSCPT---LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
           LT         + S   +LD+S   +  L    L  + L+ L       L
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL--EHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 20/181 (11%)

Query: 7   LQNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSN-ALTDIGP--LNKCRQ 57
             N   +  + +S +  L+ L S     L+     +  + + +   LT I P  L +   
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSK----VTHIEIRNTRNLTYIDPDALKELPL 106

Query: 58  LNTLHVAYNAITSLPD-NCISAWSEMEELVLSGN-GISSLPNTIPQSWP-HLRVLRLHSN 114
           L  L +    +   PD   + +      L ++ N  ++S+P    Q        L+L++N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 115 HLTSCPTLYLS-SSLRVLDLSYN-HLERLNLNTL--IPKQLQYLDVSGNPRLHVDPNHFK 170
             TS      + + L  + L+ N +L  ++ +    +      LDVS      +     +
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

Query: 171 S 171
            
Sbjct: 227 H 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 6   FLQNSSKLKVLNISKNC-LKMLP--SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
            + ++    +L I+ N  +  +P  +          L L +N  T +     N   +L+ 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDA 183

Query: 61  LHVAYNA-ITSLPDNCIS-AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
           +++  N  +T +  +     +S    L +S   +++LP+   +   HL+ L   +  
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE---HLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
           C Q     V    I  +P   +      + L L    + ++P+    + P++  + +  +
Sbjct: 10  CHQEEDFRVTCKDIQRIPS--LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 115 ------------HLTSCPTLYLS----------------SSLRVLDLSYNHLERLNLNTL 146
                       +L+    + +                   L+ L +    L+     T 
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 147 IP--KQLQYLDVSGNPRLHVDPN 167
           +        L+++ NP +   P 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 7e-10
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLRLHS 113
               + L    +       + +     + EL +     +  L     +    LR L +  
Sbjct: 7   PHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
           + L        + +  L  L+LS+N LE L+  T+    LQ L +SGNP
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 23  LKMLPSLNNENRYLEKLYLTSN-ALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW 79
           L  LP   N    L +LY+ +   L  +    L    +L  L +  + +  +  +     
Sbjct: 24  LHHLPGAEN----LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 80  SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLSSSLR 129
             +  L LS N + SL     Q    L+ L L  N L  SC   +L     
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 72  PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCPTLYLS--SSL 128
           PD C    S    L  + +G     + +P +  +L  L + +  HL       L     L
Sbjct: 2   PDACCPHGSS--GLRCTRDGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGEL 58

Query: 129 RVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
           R L +  + L  +  +      +L  L++S N    +     + 
Sbjct: 59  RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 45/203 (22%)

Query: 1   MALELFLQNSSKLKVLNISKNCL---------KMLPSLNN-----ENRYLEKLYLTSNAL 46
             L  FL   + L+ L +  N L         + L  L           L  +    N L
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 47  TDIG------PLNKCRQLNTLHVAYNAITS-----LPDNCISAWSEMEELVLSGNGI--- 92
            +             R L+T+ +  N I       L    ++   E++ L L  N     
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 93  --SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--------SLRVLDLSYNHLERLN 142
             S+L   +  SWP+LR L L+   L++     +           L+ L L YN +E   
Sbjct: 232 GSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 143 LNTLI------PKQLQYLDVSGN 159
           + TL          L +L+++GN
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 56/209 (26%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNE-----------NRYLEKLYLTSNALTDIG 50
            L   + +   L++   S      +     E              L  + L+ NA     
Sbjct: 51  WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 51  P------LNKCRQLNTLHVAYNAIT---------SLPDNCISAWSE----MEELVLSGN- 90
                  L+K   L  L++  N +          +L +  ++  ++    +  ++   N 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 91  ----GISSLPNTIPQSWPHLRVLRLHSNHLTS-------CPTLYLSSSLRVLDLSYNHL- 138
                +     T       L  +++  N +            L     L+VLDL  N   
Sbjct: 171 LENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 139 --------ERLNLNTLIPKQLQYLDVSGN 159
                     L         L+ L ++  
Sbjct: 230 HLGSSALAIALKSWP----NLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 43/168 (25%)

Query: 7   LQNSSKLKVLNISKNCL---------KMLPSLNNENRYLEKLYLTSNALTDIG------- 50
            +N+  L+ +   +N L         K   S    +R L  + +  N +   G       
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQS----HRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 51  PLNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGNGISS-----LPNT 98
            L  C++L  L +  N  T       SA +          EL L+   +S+     + + 
Sbjct: 211 GLAYCQELKVLDLQDNTFT---HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 99  IPQSW-PHLRVLRLHSNHLTSCPTLYLS-------SSLRVLDLSYNHL 138
             +     L+ LRL  N +       L          L  L+L+ N  
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 29/137 (21%)

Query: 7   LQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIG------PLNK 54
            Q+   L  + + +N +       +L       + L+ L L  N  T +G       L  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEM---------EELVLSGNGIS-----SLPNTIP 100
              L  L +    ++       +A  +          + L L  N I      +L   I 
Sbjct: 243 WPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 101 QSWPHLRVLRLHSNHLT 117
           +  P L  L L+ N  +
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 37  EKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
            +LYL  N  T +   L+  + L  + ++ N I++L +   S  +++  L+LS N +  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCP 120
           P         LR+L LH N ++  P
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVP 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 37  EKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
            +L L  N L  I   G   +   L  L +  N +T +  N     S ++EL L  N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 94  SLPNTIPQSWPHLRVLRLHSNHLTSCP 120
            + N +      L+ L L+ N ++   
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVM 118

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 39/192 (20%)

Query: 4   ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------P 51
           +     S K++ L++   CL      +L S       L++L+L+ N L D G        
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 52  LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPNTI 99
           L+   +L  L + Y +++          + +       +EL +S N     G+  L   +
Sbjct: 138 LDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194

Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTLIP----- 148
             S   L  L+L S  +TS      C  +   +SLR L L  N L  + +  L P     
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 149 -KQLQYLDVSGN 159
             +L+ L +   
Sbjct: 255 SSRLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 33/166 (19%)

Query: 4   ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------P 51
              L  SS+L+ L I +  +       L  +      L++L L  N L D G        
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308

Query: 52  LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPNTI 99
           L    QL +L V   + T     C S +S +        EL +S N     G+  L   +
Sbjct: 309 LEPGCQLESLWVKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLE 139
            Q    LRVL L    ++         TL  + SLR LDLS N L 
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 39/192 (20%)

Query: 4   ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------- 50
           E  L    +L+ L +    L     + L S+       ++L +++N + + G        
Sbjct: 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194

Query: 51  PLNKCRQLNTLHVAYNAITSLPDNC------ISAWSEMEELVLSGN-----GISSLPNTI 99
             + C+ L  L +    +T   DNC      +++ + + EL L  N     G++ L   +
Sbjct: 195 KDSPCQ-LEALKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTLIP----- 148
                 LR L +    +T+      C  L    SL+ L L+ N L       L       
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 149 -KQLQYLDVSGN 159
             QL+ L V   
Sbjct: 312 GCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 43/182 (23%)

Query: 2   ALELFLQNSSKLKVLNISKNCLK------MLPSLNNENRYLEKLYLTSNALTDIG----- 50
            L   + + + L+ L +  N L       + P L + +  L  L++    +T  G     
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 51  -PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
             L     L  L +A N +                      G   L  T+ +    L  L
Sbjct: 278 RVLRAKESLKELSLAGNEL-------------------GDEGARLLCETLLEPGCQLESL 318

Query: 110 RLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTL------IPKQLQYLDVS 157
            + S   T+         L  +  L  L +S N LE   +  L          L+ L ++
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 158 GN 159
             
Sbjct: 379 DC 380

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 39/170 (22%)

Query: 10  SSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQLNTL 61
           S  ++ L+I    L       L    +  + + L    LT+         L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 62  HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--- 118
           ++  N +                      G+  +   +      ++ L L +  LT    
Sbjct: 62  NLRSNEL-------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 119 ---CPTLYLSSSLRVLDLSYNHLERLNLNTLIPK------QLQYLDVSGN 159
                TL    +L+ L LS N L    L  L         +L+ L +   
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 36/197 (18%), Positives = 60/197 (30%), Gaps = 45/197 (22%)

Query: 2   ALELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIGP----- 51
                L    + +V+ +    L     K + S    N  L +L L SN L D+G      
Sbjct: 19  RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78

Query: 52  --LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPN 97
                  ++  L +    +T          S         +EL LS N     G+  L  
Sbjct: 79  GLQTPSCKIQKLSLQNCCLT---GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135

Query: 98  TIPQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHL---------ERLN 142
            +      L  L+L    L++         L      + L +S N +         + L 
Sbjct: 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 143 LNTLIPKQLQYLDVSGN 159
            +     QL+ L +   
Sbjct: 196 DSPC---QLEALKLESC 209

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 42/197 (21%)

Query: 2   ALELFLQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIGP---- 51
            +E F      +  L++S N L      +++ +  N    +  L L+ N+L         
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 52  ---LNKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGISS-----L 95
                    + +L+++ N ++           +           L L  N  SS      
Sbjct: 73  QILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129

Query: 96  PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL-- 146
                     +  L L  N L    +  L         ++  L+L  N+L   N   L  
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189

Query: 147 ----IPKQLQYLDVSGN 159
               IP  +  LD+S N
Sbjct: 190 FLASIPASVTSLDLSAN 206

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 42/196 (21%)

Query: 4   ELFLQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIGP------ 51
           + F    + +  LN+S N L      +++  L      +  L L+ N L+          
Sbjct: 44  QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103

Query: 52  -LNKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGIS-----SLPN 97
                  +  L + +N  +       S + +           L L GN +       L  
Sbjct: 104 LAAIPFTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160

Query: 98  TIPQSWPHLRVLRLHSNHLTSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL---- 146
            +     ++  L L  N+L S     L+        S+  LDLS N L   +   L    
Sbjct: 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220

Query: 147 --IPKQLQYLDVSGNP 160
             IP  +  L++  N 
Sbjct: 221 SSIPNHVVSLNLCLNC 236

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 38/176 (21%)

Query: 18  ISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG--------PLNKCRQLNTLHVAYNAIT 69
                   +    +    +  L L+ N L  I                + +L+++ N++ 
Sbjct: 6   TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLG 64

Query: 70  SLPDNCISAWSEM--------EELVLSGNGIS-----SLPNTIPQSWPHLRVLRLHSNHL 116
                      ++          L LSGN +S      L  T+      + VL L  N  
Sbjct: 65  ---FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 117 TSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL------IPKQLQYLDVSGN 159
           +S  +            S+  L+L  N L   + + L      IP  +  L++ GN
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 40/157 (25%)

Query: 4   ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIGP------- 51
            +F    + +  LN+  NCL     + L  L +  ++L+ +YL  + + ++         
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 52  --LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
                 +++  +      I                     +    + N I +      V 
Sbjct: 278 AAFPNIQKIILVDKNGKEIHP-------------------SHSIPISNLIRELSGKADVP 318

Query: 110 RLHSNHLT-------SCPTLYLSSSLRVLDLSYNHLE 139
            L +  L        +   L +   LR    +   L 
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 39/170 (22%)

Query: 4   ELFLQNSSKLKVLNISKNCLK------MLPSLNNENRYLEKLYLTSNALTDIGPL----- 52
           + F    + +  LN+  N L       ++  L      +  L L  N L           
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 53  --NKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGISS-----LPN 97
             +    + +L ++ N +        +  + +          L L  N +       L  
Sbjct: 191 LASIPASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 98  TIPQSWPHLRVLRLHSNHLTS---------CPTLYLSSSLRVLDLSYNHL 138
                  HL+ + L  + + +                  + ++D +   +
Sbjct: 248 LKDSL-KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 42/190 (22%)

Query: 4   ELFLQNSSKLKVLNISKN------CLKMLPSLNNENRYLEKLYLTSNALTDIG------P 51
           +      + +  L++S N        ++    ++   ++  L L  N L           
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 52  LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111
            +  + L T+++ Y+ + ++      A               + PN        + ++  
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGA------------AFPNI-----QKIILVDK 291

Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL-------------IPKQLQYLDVSG 158
           +   +    ++ +S+ +R L    +    LN   +             IP +L+    + 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 159 NPRLHVDPNH 168
            P L    +H
Sbjct: 352 KPLLEHHHHH 361

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           L++  N IT L      +   ++EL L  N + +LP  +  S   L VL L +N LT  P
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104

Query: 121 TLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
           +        L+ L +  N L  L         L +L +  N
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 14  KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
           ++L +  N +  L     ++   L++LYL SN L  +  G  +   QL  L +  N +T 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           LP         ++EL +  N ++ LP  I +   HL  L L  N L S P
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIP 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 45/188 (23%)

Query: 9   NSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNTLH 62
             ++L  L I+   +   +   L+     L  L  + NAL+  G     ++    L  + 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALS--GTLPPSISSLPNLVGIT 155

Query: 63  VAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNT-------------------IPQ 101
              N I+ ++PD+  S       + +S N ++  +P T                      
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 102 SW---PHLRVLRLHSNHLT-SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQ------L 151
            +    + + + L  N L      + LS +L  LDL  N      +   +P+       L
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-----RIYGTLPQGLTQLKFL 270

Query: 152 QYLDVSGN 159
             L+VS N
Sbjct: 271 HSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 20/168 (11%)

Query: 7   LQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALT-----DIGPLNKCRQLN 59
           + +   L  +    N +   +  S  + ++    + ++ N LT         LN    L 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LA 200

Query: 60  TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQ--SWPHLRVLRLHSNHL 116
            + ++ N +          +    +++ L+ N ++     + +     +L  L L +N +
Sbjct: 201 FVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAF---DLGKVGLSKNLNGLDLRNNRI 256

Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
                  L     L  L++S+N+L          ++      + N  L
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 61  LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           L +  N++ SLP+      + + +L L GN + SLPN +      L  L L +N L S P
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 121 TLYLSS--SLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
                    L+ L L+ N L+ L      P        QL+ L +  N
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSL------PDGVFDKLTQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 14  KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
             L++  N LK LP+   +    L +LYL  N L  +  G  NK   L  L+++ N + S
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 71  LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           LP+      ++++EL L+ N + SLP+ +      L+ LRL+ N L S P
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 37  EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
            +L L SN L  +  G  +K  QL  L ++ N I SLPD      +++  L L  N + S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCP 120
           LPN +      L+ L L +N L S P
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 13/121 (10%)

Query: 14  KVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN 66
             L +  N L+ LP      L      L KL L+ N +  +  G  +K  +L  L++  N
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQ----LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPT-LYL 124
            + SLP+      ++++EL L  N + S+P+ I      L+ + LH+N    SCP   YL
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146

Query: 125 S 125
           S
Sbjct: 147 S 147

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 43/168 (25%)

Query: 4   ELFLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIG--------PLN 53
            +       L  +N++   L    L +L        KL L  N+L              +
Sbjct: 94  AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153

Query: 54  KCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGNGISS----------LP 96
           +C Q+ TL ++ N +T      ++   E          L L   G+              
Sbjct: 154 QC-QITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209

Query: 97  NTIPQSWPHLRVLRLHSNHLTSCPTLYLSS------SLRVLDLSYNHL 138
           N        L+ L +  N       L L+       SL +L L +N L
Sbjct: 210 NR------QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 75/213 (35%)

Query: 2   ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL---NKCRQL 58
              L L      K L+      + LP         E L      L+ I            
Sbjct: 303 VKSLLL------KYLDCR---PQDLPR--------EVLTTNPRRLSIIAESIRDGLATWD 345

Query: 59  NTLHVAYNAITSLPDNCISA------------------------------WSEME----E 84
           N  HV  + +T++ ++ ++                               W ++      
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 85  LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL--RVLDLSYNHLERLN 142
           +V++     SL        P    + + S +L     L    +L   ++D  YN  +  +
Sbjct: 406 VVVNKLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFD 460

Query: 143 LNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSY 175
            + LIP    YLD            +F S+  +
Sbjct: 461 SDDLIP---PYLD-----------QYFYSHIGH 479

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 28/128 (21%)

Query: 52  LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN--TIPQSWPHLRVL 109
            N    LN        +  + +N      E+  L LS N +  L +  +I Q  P+L++L
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENI----PELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201

Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
            L  N L                 S   L+++        +L+ L + GN       +  
Sbjct: 202 NLSGNELK----------------SERELDKIKG-----LKLEELWLDGNSLCDTFRDQ- 239

Query: 170 KSYRSYVR 177
            +Y S +R
Sbjct: 240 STYISAIR 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.05
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.25
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.35

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-24  Score=151.69  Aligned_cols=171  Identities=29%  Similarity=0.368  Sum_probs=149.7

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|++++|.+..++ ..+..+++|+.|++++|.++.+  ..+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            46899999999998877 5788899999999999998887  44678999999999999999888887888999999999


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      .+|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|.++.+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            9999998888777788999999999999988764  778899999999999999988776654 8999999999999998


Q ss_pred             CCCCcCCCcceeEEEEE
Q psy13911        165 DPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       165 ~~~~~~~~~~l~~l~l~  181 (183)
                      ++..+..+++|+.|+++
T Consensus       197 ~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CTTTTTTCTTCCEEECC
T ss_pred             CHHHhccccCCCEEEec
Confidence            88889999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.5e-24  Score=152.03  Aligned_cols=174  Identities=26%  Similarity=0.332  Sum_probs=149.2

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ...++.++.+++.++.+..++. +..+++|+.|++++|.+.....+..+++|++|++++|.++.+++..+..+++|++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3467789999999998887654 677899999999999988887788899999999999999988887788899999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      +++|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|.+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            99999998888776688999999999999888764  678889999999999999887766554 889999999999999


Q ss_pred             eCCCCcCCCcceeEEEEE
Q psy13911        164 VDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       164 ~~~~~~~~~~~l~~l~l~  181 (183)
                      +++..+..+++|+.|+++
T Consensus       196 ~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             CCTTTTTTCTTCCEEECC
T ss_pred             cCHHHHhCCcCCCEEEcc
Confidence            888888999999988874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.8e-25  Score=155.52  Aligned_cols=174  Identities=21%  Similarity=0.278  Sum_probs=89.9

Q ss_pred             hhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCC-CCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          7 LQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNA-LTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      +..+++|++|++++|.+..+ +..+..+++|+.|++++|. +...  ..+..+++|++|++++|.+...++..+..+++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            44555555555555555544 3444555555555555554 4444  334455555555555555555544445555555


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN  159 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n  159 (183)
                      +++++++|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            555555555555554434345555555555555554432  444555555555555555554433332 55555555555


Q ss_pred             CceeeCCCCcCCCcceeEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      .++++++..+..+++|+.|++
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEEC
T ss_pred             cCCcCCHHHcccCcccCEEec
Confidence            555554445555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=162.28  Aligned_cols=176  Identities=25%  Similarity=0.307  Sum_probs=125.6

Q ss_pred             HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ..|..+++|+.|++++|.+..++ ..|.++++|+.|++++|+++.+  ..+..+++|+.|++++|.+..+++..+..+++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            45677788888888888887765 6677788888888888887777  35777888888888888887777766777777


Q ss_pred             CcEEEecC-CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911         82 MEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN  159 (183)
Q Consensus        82 L~~l~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n  159 (183)
                      |++|++.+ +.+..++...+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            77777776 45556666555567777777777777777776667777777777777777665555443 56666666666


Q ss_pred             CceeeCCCCcCCCcceeEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      .++++.+..|.++++|+.|+|
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEEC
T ss_pred             ceeEEChhhhcCCCCCCEEEC
Confidence            666666666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.6e-24  Score=161.81  Aligned_cols=177  Identities=21%  Similarity=0.265  Sum_probs=120.9

Q ss_pred             HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ..|+.+++|+.|++++|.+..++ ..+.++++|+.|++++|.++.+  ..+..+++|++|++++|.+..+++..+..+++
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  172 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS  172 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence            45667777777777777777655 5667777777777777777766  34667777777777777777766666666777


Q ss_pred             CcEEEecC-CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911         82 MEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN  159 (183)
Q Consensus        82 L~~l~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n  159 (183)
                      |+.|++++ +.++.++...+..+++|+.|++++|.++++|.+..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus       173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            77777766 45556666555567777777777777777776666777777777777776665544443 56666666666


Q ss_pred             CceeeCCCCcCCCcceeEEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .++++.+..|.++++|+.|+|+
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECC
T ss_pred             cCceECHHHhcCCCCCCEEECC
Confidence            6666666666666666666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=7.1e-24  Score=147.01  Aligned_cols=169  Identities=24%  Similarity=0.297  Sum_probs=139.6

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      ...+.+++.++.+..+|..+.  +.++.|++++|.+...  ..+..+++|++|++++|.++.+++..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            456788888888888886553  6788899998888887  467888889999999888888887778888889999999


Q ss_pred             CCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeC
Q psy13911         89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~  165 (183)
                      +|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|.+++++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            998888887776688889999999988888763  677888999999999888887765554 88889999999888888


Q ss_pred             CCCcCCCcceeEEEEE
Q psy13911        166 PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       166 ~~~~~~~~~l~~l~l~  181 (183)
                      +..+..+++|+.|+++
T Consensus       172 ~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          172 HGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TTTTTTCTTCCEEECC
T ss_pred             HHHHhCCCCCCEEEee
Confidence            8888888888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=7.2e-24  Score=149.50  Aligned_cols=172  Identities=22%  Similarity=0.281  Sum_probs=155.4

Q ss_pred             CCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEE
Q psy13911         10 SSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEEL   85 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l   85 (183)
                      .+.++.|++++|.+..++ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|. +..+++..+..+++|+++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            568999999999999977 6788999999999999999887  578899999999999997 888877779999999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCce
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL  162 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~  162 (183)
                      ++.+|.++.++...+..+++|++|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            999999998877767689999999999999998763  788899999999999999988776655 89999999999999


Q ss_pred             eeCCCCcCCCcceeEEEEE
Q psy13911        163 HVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       163 ~~~~~~~~~~~~l~~l~l~  181 (183)
                      +..+..+.++++|+.|+++
T Consensus       191 ~~~~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             EECTTTTTTCTTCCEEECC
T ss_pred             ccCHhHccCcccccEeeCC
Confidence            9999999999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.6e-24  Score=155.66  Aligned_cols=174  Identities=20%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCccccc-------
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCIS-------   77 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~-------   77 (183)
                      .+..+++|++|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+....+..+.       
T Consensus        99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            34455666666666666666665556666666666666665544 3455555566665555433322222122       


Q ss_pred             --CCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-CCccE
Q psy13911         78 --AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY  153 (183)
Q Consensus        78 --~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~  153 (183)
                        .+++|++|++++|.++.+|..+. .+++|++|++++|.++++| .+..+++|+.|++++|.+.+..+..+.. ++|++
T Consensus       179 ~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             EEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             hccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence              25555555555555555544433 4555666666665555544 3445555555555555444433333322 55555


Q ss_pred             EEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        154 LDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       154 l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |++++|.+.+..|..+.++++|+.|+|
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeC
Confidence            555555555555555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8e-23  Score=143.14  Aligned_cols=168  Identities=24%  Similarity=0.314  Sum_probs=152.2

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      ..+.++++++.++.+|..+.  +.++.|++++|.+..+  ..+..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            47899999999999986553  6899999999999988  4689999999999999999999888888999999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCC
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~  166 (183)
                      |.++.++...+..+++|+.|++++|.++.++.  +..+++|++|++++|.+++++...+.. ++|++|++++|.++.+++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            99999998877789999999999999998763  788999999999999999988776654 999999999999999988


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                      ..|.++++|+.|+++
T Consensus       175 ~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          175 GAFDKLTELKTLKLD  189 (270)
T ss_dssp             TTTTTCTTCCEEECC
T ss_pred             hHhccCCCcCEEECC
Confidence            899999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.3e-24  Score=148.83  Aligned_cols=170  Identities=25%  Similarity=0.255  Sum_probs=102.7

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .+++|++++|.+..++ ..+..+++|+.|++++|+++.+  ..+..+++|++|++++|.+...++..+..+++|+++++.
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            4566666666665554 3455556666666666655554  245555666666666666655555555555566666666


Q ss_pred             CCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCccc---------------------------
Q psy13911         89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHL---------------------------  138 (183)
Q Consensus        89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l---------------------------  138 (183)
                      +|.+..++...+..+++|++|++++|.+++  +| .+..+++|+.|++++|.+                           
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            655555554334455555666665555554  22 244445555555555544                           


Q ss_pred             -ccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        139 -ERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       139 -~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                       ++++...+...++++|++++|.++++++..+..+++|+.|+++
T Consensus       189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence             4444444444578889999999888877888889999988875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=4.8e-23  Score=153.43  Aligned_cols=176  Identities=18%  Similarity=0.246  Sum_probs=157.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAW   79 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~   79 (183)
                      +..|..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+  ..+..+++|+.|++.+ +.+..+++..+..+
T Consensus       105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            357889999999999999999988 5788999999999999999988  5688999999999998 56777777789999


Q ss_pred             CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911         80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV  156 (183)
Q Consensus        80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l  156 (183)
                      ++|++|++++|.++.+|. + ..+++|+.|++++|.+++++  .+..+++|+.|++++|.+++++...+.. ++|++|++
T Consensus       185 ~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPN-L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             SSCCEEECTTSCCSSCCC-C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             cccCeecCCCCcCccccc-c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            999999999999998875 3 37899999999999999863  5888999999999999999998877765 89999999


Q ss_pred             CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        157 SGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++|.++.+++..|..+++|+.|+|+
T Consensus       263 ~~N~l~~~~~~~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          263 AHNNLTLLPHDLFTPLHHLERIHLH  287 (440)
T ss_dssp             TTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCCCccChhHhccccCCCEEEcC
Confidence            9999999999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=1.4e-23  Score=144.50  Aligned_cols=169  Identities=12%  Similarity=0.206  Sum_probs=134.5

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCC-CCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEE
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNA-LTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l   85 (183)
                      +.++.|++++|.+..++ ..+..+++|+.|++++|. ++.+  .+|..+++|+.|++++ |.++.+++..+..+++|+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            36888888888888877 467788888888888886 7776  3677888888888887 88888877778888888888


Q ss_pred             EecCCcCccCCCCCCCCCCCcc---EEEeeCC-cCCCCCC--ccCCCccc-EEeccCcccccccCCCCCCCCccEEEcCC
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLR---VLRLHSN-HLTSCPT--LYLSSSLR-VLDLSYNHLERLNLNTLIPKQLQYLDVSG  158 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~--~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~l~~l~l~~  158 (183)
                      ++.+|.++.+|.  +..+++|+   .+++++| .+++++.  +..+++|+ .+++++|.++.++...+..+++++|++++
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            888888888776  33667777   8888888 8877653  77778888 88888888888777666667888888888


Q ss_pred             CC-ceeeCCCCcCCC-cceeEEEEE
Q psy13911        159 NP-RLHVDPNHFKSY-RSYVRVYIQ  181 (183)
Q Consensus       159 n~-~~~~~~~~~~~~-~~l~~l~l~  181 (183)
                      |+ ++.+++..|.++ ++|+.|+++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             CCCcccCCHHHhhccccCCcEEECC
Confidence            85 888878888888 888888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1e-22  Score=143.93  Aligned_cols=167  Identities=25%  Similarity=0.260  Sum_probs=91.2

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      .++.|++++|.+..++ ..+..+++|+.|++++|.++.+.....+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSS
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCch-hhccCCCCCEEECCCC
Confidence            4455555555554432 3445555555555555555555333455556666666665554443 2455556666666666


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCC
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~  167 (183)
                      .++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.++.++...+.. ++|++|++++|.++.+ |.
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~  189 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK  189 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence            6665555544455666666666666655542  445556666666666666655544432 5666666666666654 33


Q ss_pred             CcCCCcceeEEEE
Q psy13911        168 HFKSYRSYVRVYI  180 (183)
Q Consensus       168 ~~~~~~~l~~l~l  180 (183)
                      .+..+..|+.+++
T Consensus       190 ~~~~~~~L~~l~L  202 (290)
T 1p9a_G          190 GFFGSHLLPFAFL  202 (290)
T ss_dssp             TTTTTCCCSEEEC
T ss_pred             hhcccccCCeEEe
Confidence            3334445555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.8e-22  Score=140.53  Aligned_cols=160  Identities=28%  Similarity=0.333  Sum_probs=142.9

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME   83 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~   83 (183)
                      .++.+++|+.|++++|.+..++ .+..+++|+.|++++|.++..  ..+..+++|++|++++|.+..+++..+..+++|+
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            4778999999999999999875 677899999999999999988  4478999999999999999999888889999999


Q ss_pred             EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCC
Q psy13911         84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP  160 (183)
Q Consensus        84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~  160 (183)
                      ++++++|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            99999999999988877689999999999999998764  788899999999999999988766554 899999999999


Q ss_pred             ceeeCC
Q psy13911        161 RLHVDP  166 (183)
Q Consensus       161 ~~~~~~  166 (183)
                      +.+..+
T Consensus       217 ~~~~~~  222 (272)
T 3rfs_A          217 WDCTCP  222 (272)
T ss_dssp             BCCCTT
T ss_pred             ccccCc
Confidence            876533

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=3.1e-22  Score=138.79  Aligned_cols=154  Identities=27%  Similarity=0.368  Sum_probs=140.1

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|++++|.+..++ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            57999999999999876 5788999999999999999988  45889999999999999999999888899999999999


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      ++|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. ++|++|++++|++.+.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999998877789999999999999998863  788899999999999999988766655 8999999999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1e-22  Score=145.16  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=135.6

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .++.+++|+.|++++|.+..++. +..+++|+.|++++|.++....+..+++|+.|++++|.++.+++  +..+++|+++
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  134 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL  134 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred             hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEE
Confidence            46678888888888888887776 77788888888888888877777788888888888888887654  7788888888


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                      ++++|.++.++.  +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.+++..
T Consensus       135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             ECCCCccCcCcc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence            888888887765  33678888999998888887767888889999999998888764 222388999999999998875


Q ss_pred             CCCcCCCcceeEEEEE
Q psy13911        166 PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       166 ~~~~~~~~~l~~l~l~  181 (183)
                        .+..+++|+.|+++
T Consensus       212 --~l~~l~~L~~L~l~  225 (308)
T 1h6u_A          212 --PLANTSNLFIVTLT  225 (308)
T ss_dssp             --GGTTCTTCCEEEEE
T ss_pred             --cccCCCCCCEEEcc
Confidence              37889999988875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=4.2e-23  Score=146.91  Aligned_cols=175  Identities=22%  Similarity=0.230  Sum_probs=128.6

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      .+..+++|++|++++|.+..++..+..+++|+.|++++|.+...   ..+..+++|+.|++++|.+....+..+..+++|
T Consensus        73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  152 (306)
T 2z66_A           73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  152 (306)
T ss_dssp             HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred             ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence            33445666666666666666665566777777777777777665   246777888888888888877776667778888


Q ss_pred             cEEEecCCcCcc--CCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911         83 EELVLSGNGISS--LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS  157 (183)
Q Consensus        83 ~~l~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~  157 (183)
                      +++++++|.+..  .+..+ ..+++|+.|++++|.+++.+  .+..+++|+.|++++|.+++++...+.. ++|++|+++
T Consensus       153 ~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CEEECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            888888887764  44443 37788888888888887753  4677788888888888888876655544 788888888


Q ss_pred             CCCceeeCCCCcCCCc-ceeEEEEE
Q psy13911        158 GNPRLHVDPNHFKSYR-SYVRVYIQ  181 (183)
Q Consensus       158 ~n~~~~~~~~~~~~~~-~l~~l~l~  181 (183)
                      +|.+++..+..+..++ +|+.|+++
T Consensus       232 ~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          232 LNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCCCcccCHHHHHhhhccCCEEEcc
Confidence            8888888888888874 78888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=1e-22  Score=152.09  Aligned_cols=176  Identities=19%  Similarity=0.246  Sum_probs=157.1

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAW   79 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~   79 (183)
                      +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++ +.+..++...+..+
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  195 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL  195 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence            356889999999999999999987 5588899999999999999987  5688999999999998 67777887789999


Q ss_pred             CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911         80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV  156 (183)
Q Consensus        80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l  156 (183)
                      ++|+.|++++|.++.++. + ..+++|+.|++++|.+++++  .+..+++|+.|++++|.++++....+.. ++|++|++
T Consensus       196 ~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             TTCCEEECTTSCCSSCCC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccccccc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence            999999999999998864 3 37899999999999999864  4888899999999999999988777765 89999999


Q ss_pred             CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        157 SGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++|.++.+++..+..+++|+.|+++
T Consensus       274 ~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          274 AHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             CSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             CCCcCCccChHHhccccCCCEEEcc
Confidence            9999999989999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4.1e-22  Score=140.85  Aligned_cols=159  Identities=29%  Similarity=0.335  Sum_probs=144.8

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      +..+..+++|+.|++++|.+..++.. ..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++.+++..+..+++|
T Consensus        48 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence            45688999999999999999988765 6889999999999999988 567889999999999999999998889999999


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      ++|++++|.++.++...+..+++|+.|++++|.++++|.  +..+++|+.|++++|.++.++...+...+++.+++++|+
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            999999999999999887789999999999999999874  678899999999999999998777767899999999999


Q ss_pred             cee
Q psy13911        161 RLH  163 (183)
Q Consensus       161 ~~~  163 (183)
                      +.+
T Consensus       207 ~~C  209 (290)
T 1p9a_G          207 WLC  209 (290)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=2.2e-23  Score=148.39  Aligned_cols=175  Identities=21%  Similarity=0.238  Sum_probs=110.0

Q ss_pred             hhcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCc-ccccCCCC
Q psy13911          7 LQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPD-NCISAWSE   81 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~   81 (183)
                      ++.+++|+.|++++|.+..+   +..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+...++ ..+..+++
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            34445555555555544432   23333445555555555554444 335556667777777666665554 44666677


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS  157 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~  157 (183)
                      |+++++++|.+...+...+..+++|++|++++|.+++  .| .+..+++|++|++++|.++++++..+.. ++|++|+++
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            7777777777766555555566777777777777664  33 4666677777777777777765555544 777788888


Q ss_pred             CCCceeeCCCCcCCCcceeEEEEE
Q psy13911        158 GNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       158 ~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +|.++++++..+..+++|+.|+++
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CCccCccChhhccCcccCCEeECC
Confidence            887777766677777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.3e-23  Score=148.82  Aligned_cols=177  Identities=23%  Similarity=0.259  Sum_probs=97.9

Q ss_pred             HHHhhcCCCCcEEEccC-CcCC-CccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911          4 ELFLQNSSKLKVLNISK-NCLK-MLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      +..++.++.|++|++++ |.+. .+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            34455555555555552 4444 2444555555555555555555422  334445555555555555553333334445


Q ss_pred             CCCcEEEecCCcCc-cCCCCCCCCCC-C-----------------------ccEEEeeCCcCCCCC--CccCCCcccEEe
Q psy13911         80 SEMEELVLSGNGIS-SLPNTIPQSWP-H-----------------------LRVLRLHSNHLTSCP--TLYLSSSLRVLD  132 (183)
Q Consensus        80 ~~L~~l~l~~~~l~-~~~~~~~~~~~-~-----------------------L~~L~l~~~~~~~~~--~~~~~~~L~~l~  132 (183)
                      ++|+++++++|.++ .+|..+. .++ +                       |+.|++++|.+++..  .+..+++|+.|+
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             CCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            55555555555444 3333222 222 4                       444444444444321  255566777777


Q ss_pred             ccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        133 LSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       133 l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +++|.+++..+.....++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             CCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence            7777776554443333778888888888887778888888888888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=152.19  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        122 LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       122 ~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +..+++|+.|++++|.+++++...+.. ++|++|++++|.++++.+..|.++++|+.|++
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence            334455555555555555554444333 55556666666655555556666666665555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=7.3e-23  Score=147.05  Aligned_cols=177  Identities=21%  Similarity=0.242  Sum_probs=151.1

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCC---------CCCCCCCEEeeCCcccccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPL---------NKCRQLNTLHVAYNAITSL   71 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---------~~l~~L~~l~l~~~~~~~~   71 (183)
                      ++..++.+++|++|++++|.+..+|..+..+++|+.|++++|.+.+.  ..+         ..+++|+.|++++|.++.+
T Consensus       119 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l  198 (328)
T 4fcg_A          119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL  198 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC
T ss_pred             hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc
Confidence            45668899999999999999999999999999999999999775544  333         3489999999999999976


Q ss_pred             CcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-
Q psy13911         72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-  148 (183)
Q Consensus        72 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-  148 (183)
                      +.. +..+++|++|++++|.++.++..+. .+++|+.|++++|.+.+ +| .++.+++|+.|++++|.+.+..+..+.. 
T Consensus       199 p~~-l~~l~~L~~L~L~~N~l~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          199 PAS-IANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             CGG-GGGCTTCCEEEEESSCCCCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             hHh-hcCCCCCCEEEccCCCCCcCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            654 8899999999999999999887654 88999999999987765 45 4888999999999998776655544443 


Q ss_pred             CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        149 KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       149 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++|++|++++|++.+..|..+.++++++.+++.
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            899999999999999889999999999988764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=3.7e-22  Score=149.94  Aligned_cols=171  Identities=23%  Similarity=0.238  Sum_probs=119.8

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|++++|.+..++ ..|..+++|+.|++++|.++..  .+|.++++|++|++++|.++.+++..+..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46677777777777654 5677777777777777777666  45677777777777777777777666677777777777


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      ++|.+..++...+..+++|+.|++++|.+++++  .+..+++|+.|++++|.+++++...+.. ++|+.|++++|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            777777666555556777777777777776543  4666677777777777777665444433 6777777777777777


Q ss_pred             CCCCcCCCcceeEEEEE
Q psy13911        165 DPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       165 ~~~~~~~~~~l~~l~l~  181 (183)
                      .+..|..+++|+.|+++
T Consensus       192 ~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             CTTCSCSCTTCCEEEEE
T ss_pred             ChhhcccCcccceeeCC
Confidence            66677777777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-21  Score=143.97  Aligned_cols=115  Identities=22%  Similarity=0.304  Sum_probs=86.1

Q ss_pred             HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      .++..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+..+++..+..+++
T Consensus        63 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence            44677788888888888877765 4677788888888888887776  44677788888888888887777766677778


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      |+++++++|.++.++...+..+++|+.|++++|.++++
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            88888888877777666555677777777777776643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=6.3e-22  Score=138.95  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=133.8

Q ss_pred             EEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911         15 VLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI   92 (183)
Q Consensus        15 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   92 (183)
                      .++..+..+..+|..+.  ++++.|++++|.++..  ..+.++++|++|++++|.+..+++..+..+++|+++++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            46666777788886553  6799999999999988  4788999999999999999998888899999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCccccccc-CCCCCC-CCccEEEcCCCCceeeCCCC
Q psy13911         93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLN-LNTLIP-KQLQYLDVSGNPRLHVDPNH  168 (183)
Q Consensus        93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~-~~~~~~-~~l~~l~l~~n~~~~~~~~~  168 (183)
                      +.++...+..+++|++|++++|.+++++  .+..+++|++|++++|.++++. +..+.. ++|++|++++|.++++.+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            9888776668999999999999999875  3888899999999999998854 333333 88999999999888877666


Q ss_pred             cCCCccee
Q psy13911        169 FKSYRSYV  176 (183)
Q Consensus       169 ~~~~~~l~  176 (183)
                      +..++.++
T Consensus       169 ~~~l~~L~  176 (276)
T 2z62_A          169 LRVLHQMP  176 (276)
T ss_dssp             GHHHHTCT
T ss_pred             hhhhhhcc
Confidence            66555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=7.4e-22  Score=141.92  Aligned_cols=173  Identities=25%  Similarity=0.322  Sum_probs=82.5

Q ss_pred             HhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911          6 FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      .++.+++|++|++++|.+..+ |..+..+++|+.|++++|.++.++.- -.++|+.|++++|.+..+++..+..+++|++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccE
Confidence            455666666666666666654 45566666666666666665544110 0134444444444444443333444444444


Q ss_pred             EEecCCcCcc--CCCCCCCCCCC---------------------ccEEEeeCCcCCCCC--CccCCCcccEEeccCcccc
Q psy13911         85 LVLSGNGISS--LPNTIPQSWPH---------------------LRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE  139 (183)
Q Consensus        85 l~l~~~~l~~--~~~~~~~~~~~---------------------L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~  139 (183)
                      +++++|.+..  .....+..+++                     |+.|++++|.+++++  .+..+++|+.|++++|.++
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            4444444431  22222223334                     444444444444331  2444445555555555555


Q ss_pred             cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        140 RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       140 ~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +++...+.. ++|++|++++|.++.+ |..+..+++|+.|++
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l  270 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYL  270 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEEC
T ss_pred             eeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEEC
Confidence            544333322 4555555555555533 334555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.5e-21  Score=150.34  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=88.1

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      +.++..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+...  ..+.++++|++|++++|.+..+++..+..++
T Consensus        68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  147 (597)
T 3oja_B           68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP  147 (597)
T ss_dssp             THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence            345677888888888888888765 4777788888888888887777  3467788888888888888877777677788


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      +|++|++++|.++.+++..+..+++|+.|++++|.++++
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            888888888888777766555777788888777776653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=8.7e-23  Score=145.79  Aligned_cols=174  Identities=20%  Similarity=0.152  Sum_probs=117.0

Q ss_pred             HHhhcCCCCcEEEccCCcCC-CccccccccccccEEEccCCCCCCC--CCCCCCC-CCCEEeeCCccccccCcccccCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDI--GPLNKCR-QLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      ..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++.  ..+..++ +|+.|++++|.+....+..+..+.
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            34455555555555555554 2444555555555555555555422  3344454 566666666655544444455554


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC-CCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG  158 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~  158 (183)
                       |+.+++++|.++..+...+..+++|+.|++++|.+++. +.+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence             66777777766655555556889999999999998864 45777899999999999998655555544 8999999999


Q ss_pred             CCceeeCCCCcCCCcceeEEEE
Q psy13911        159 NPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       159 n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |++++..|.. ..+++|+.+++
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAY  298 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGT
T ss_pred             CcccccCCCC-ccccccChHHh
Confidence            9999877776 77888876654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=1.9e-21  Score=145.26  Aligned_cols=124  Identities=26%  Similarity=0.367  Sum_probs=82.3

Q ss_pred             CCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccC
Q psy13911         58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSY  135 (183)
Q Consensus        58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~  135 (183)
                      |+.+++++|.+....+..+..+++|+++++++|.++.++...+..+++|+.|++++|.+++++  .+..+++|+.|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            444444444444444444566667777777777777665555556777777777777776653  356667777777777


Q ss_pred             cccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        136 NHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       136 n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |.++++++..+.. ++|++|++++|.++++++..+..+++|+.|+++
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence            7777765555544 777778887777777777777777777777764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=6.4e-22  Score=136.18  Aligned_cols=170  Identities=18%  Similarity=0.187  Sum_probs=145.5

Q ss_pred             HHhhcCCCCcEEEccCCc-CCCcc-ccccccccccEEEccC-CCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911          5 LFLQNSSKLKVLNISKNC-LKMLP-SLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~L~~L~l~~-~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      ..++.+++|+.|++++|. +..++ ..+..+++|+.|++++ |.++.+  ..|.++++|+.|++++|.++.++.  +..+
T Consensus        49 ~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l  126 (239)
T 2xwt_C           49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKV  126 (239)
T ss_dssp             TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTC
T ss_pred             HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccc
Confidence            468899999999999997 98887 5788999999999998 999887  468899999999999999998765  7788


Q ss_pred             CCCc---EEEecCC-cCccCCCCCCCCCCCcc-EEEeeCCcCCCCCC--ccCCCcccEEeccCcc-cccccCCCCCC--C
Q psy13911         80 SEME---ELVLSGN-GISSLPNTIPQSWPHLR-VLRLHSNHLTSCPT--LYLSSSLRVLDLSYNH-LERLNLNTLIP--K  149 (183)
Q Consensus        80 ~~L~---~l~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~-l~~~~~~~~~~--~  149 (183)
                      ++++   ++++++| .++.++...+..+++|+ .+++++|.++.+|.  +.. ++|+.+++++|. +++++...+..  +
T Consensus       127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~  205 (239)
T 2xwt_C          127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS  205 (239)
T ss_dssp             CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred             cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence            8888   9999999 99999988777899999 99999999998763  344 799999999994 99988777654  6


Q ss_pred             CccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        150 QLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       150 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      ++++|++++|+++.+++..+.+   |+.|++
T Consensus       206 ~L~~L~l~~N~l~~l~~~~~~~---L~~L~l  233 (239)
T 2xwt_C          206 GPSLLDVSQTSVTALPSKGLEH---LKELIA  233 (239)
T ss_dssp             CCSEEECTTCCCCCCCCTTCTT---CSEEEC
T ss_pred             CCcEEECCCCccccCChhHhcc---Cceeec
Confidence            8999999999999887765554   455544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-21  Score=143.93  Aligned_cols=133  Identities=28%  Similarity=0.404  Sum_probs=119.5

Q ss_pred             cCCCCcEEEccCCcCCCccc-cccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          9 NSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .+++++.+++.++.+..+|. .+..+++|+.|++++|.++..  ..+..+++|++|++++|.+..+++..+..+++|+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46889999999999999884 478899999999999999887  578999999999999999999988889999999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccc
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      ++++|.++.++...+..+++|++|++++|.+++++  .+..+++|+.|++++|.++++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            99999999999887768999999999999998875  377888999999998887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.88  E-value=1.2e-21  Score=138.51  Aligned_cols=167  Identities=22%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ++.++.|+.|++.++.+..++. +..+++|+.|++++|+++....+..+++|+.|++++|.++.++.  +..+++|++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  118 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred             hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEE
Confidence            3467789999999999888864 67789999999999999888558889999999999999887654  78889999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~  166 (183)
                      +++|.++.++. + ..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.+++++ 
T Consensus       119 L~~n~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-  194 (291)
T 1h6t_A          119 LEHNGISDING-L-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-  194 (291)
T ss_dssp             CTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred             CCCCcCCCChh-h-cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-
Confidence            99999887742 3 3688999999999999888778888999999999999988765 222388999999999998863 


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                       .+..+++|+.|+++
T Consensus       195 -~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          195 -ALAGLKNLDVLELF  208 (291)
T ss_dssp             -GGTTCTTCSEEEEE
T ss_pred             -hhccCCCCCEEECc
Confidence             48889999988875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=8.2e-22  Score=140.46  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=146.8

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      .+.+++|+.|++.++.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.+..++  .+..+++|++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~  113 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence            346789999999999999887 57889999999999999999866899999999999999998865  388899999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~  166 (183)
                      +++|.++.++.  +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.++++++
T Consensus       114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCCCchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence            99999998765  34889999999999999998878899999999999999998765 2223899999999999998754


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                        +..+++|+.|+++
T Consensus       191 --l~~l~~L~~L~L~  203 (308)
T 1h6u_A          191 --LASLPNLIEVHLK  203 (308)
T ss_dssp             --GGGCTTCCEEECT
T ss_pred             --hcCCCCCCEEEcc
Confidence              8889999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=2e-22  Score=143.90  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=114.1

Q ss_pred             hcCCCCcEEEccCCcCCCcccccccc-----ccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccccc---Ccc-cc
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSL---PDN-CI   76 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~---~~~-~~   76 (183)
                      +.+++|++|++++|.+.++|..+..+     ++|++|++++|++...  ..+..+++|++|++++|.+.+.   +.. .+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            55666666666666666655545444     6666666666666665  4566677777777777765431   111 12


Q ss_pred             cCCCCCcEEEecCCcCccC---CCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCCCC
Q psy13911         77 SAWSEMEELVLSGNGISSL---PNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQ  150 (183)
Q Consensus        77 ~~~~~L~~l~l~~~~l~~~---~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~  150 (183)
                      ..+++|+++++++|.++.+   +...+..+++|+.|++++|.+++.+   .+..+++|++|++++|.++.++....  ++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            5667777777777777632   2233235577888888888887643   34556788888888888887765443  78


Q ss_pred             ccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        151 LQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       151 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |++|++++|++++. |. +..+++|+.|+++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLK  304 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence            88999999988887 44 8888999888874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=5.7e-21  Score=129.90  Aligned_cols=149  Identities=21%  Similarity=0.380  Sum_probs=133.0

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      +.++..++.+..+|..+.  +.++.|++++|+++.+  ..+..+++|+.|++++|.++.+.+..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            678999999999986553  7899999999999988  478899999999999999999888889999999999999999


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      ++.++...+..+++|+.|++++|.+++++  .+..+++|+.|++++|.+++++...+.. +++++|++++|++.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99999988778999999999999999874  4888899999999999999998776665 8999999999998763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=1.5e-21  Score=140.43  Aligned_cols=175  Identities=22%  Similarity=0.275  Sum_probs=102.1

Q ss_pred             HHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911          5 LFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME   83 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~   83 (183)
                      ..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..++... .++|++|++++|.+..+++..+..+++|+
T Consensus        72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCC
Confidence            3466667777777777766665 455666677777777777666552211 15666666666666666665566667777


Q ss_pred             EEEecCCcCcc--CCCCCCCCC--------------------CCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccc
Q psy13911         84 ELVLSGNGISS--LPNTIPQSW--------------------PHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE  139 (183)
Q Consensus        84 ~l~l~~~~l~~--~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~  139 (183)
                      ++++.+|.++.  .....+..+                    ++|++|++++|.+++.+  .+..+++|+.|++++|.++
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred             EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            77777666642  222222122                    24444455555444433  2555566666666666666


Q ss_pred             cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        140 RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       140 ~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +++...+.. ++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus       231 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          231 MIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECC
T ss_pred             cCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECC
Confidence            655444333 6666666666666644 4446666666666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=3.6e-22  Score=144.81  Aligned_cols=169  Identities=20%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      ++++|++++|.+..++ ..+..+++|+.|++++|.++..  ..+.++++|++|++++|.++.+++..+..+++|++++++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            5566666666665554 2455566666666666655554  335555666666666666655555545555666666666


Q ss_pred             CCcCccCCC-CCCCCCCCccEEEeeCC-cCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911         89 GNGISSLPN-TIPQSWPHLRVLRLHSN-HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus        89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      +|.++.++. ..+..+++|+.|++++| .++.++  .+..+++|+++++++|.+++..+..+.. ++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            666655554 33445556666666655 344432  3455555666666666555554443333 455555555555544


Q ss_pred             eCCCCcCCCcceeEEEE
Q psy13911        164 VDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       164 ~~~~~~~~~~~l~~l~l  180 (183)
                      ++...+..+++|+.|++
T Consensus       213 ~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          213 LLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             HHHHHHHHTTTEEEEEE
T ss_pred             chhhhhhhcccccEEEC
Confidence            33333334455555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=1.2e-20  Score=129.12  Aligned_cols=150  Identities=22%  Similarity=0.280  Sum_probs=132.4

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      .+.++.+++.+..+|..+.  ++|+.|++++|.++.+  ..+..+++|+.|++++|.+..+++..+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4678899999999986543  8899999999999988  56888999999999999999988888889999999999999


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      .++.++...+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.++...+.. ++|+.|++.+|++.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999998887778999999999999999887 5788899999999999999988766654 8999999999998764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=8.6e-21  Score=136.34  Aligned_cols=177  Identities=23%  Similarity=0.284  Sum_probs=144.5

Q ss_pred             HHHhhcCCCCcEEEccCCcCCC---ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      +..+..+++|+.|++++|.+..   .+..+..+++|+.|++++|.+..++.. -.++|+.|++++|.++...+..+..++
T Consensus       138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCC
Confidence            3457788888888888888763   346677888889999988888877321 127899999999999888777788999


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-------CCcc
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQ  152 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-------~~l~  152 (183)
                      +|+.+++++|.++.++...+..+++|+.|++++|.++.+| .+..+++|+++++++|.+++++...+..       ..++
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS  296 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence            9999999999999887765557899999999999999887 4778889999999999999988776643       5788


Q ss_pred             EEEcCCCCcee--eCCCCcCCCcceeEEEEE
Q psy13911        153 YLDVSGNPRLH--VDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       153 ~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~  181 (183)
                      .+++.+|++..  +.+..|..++.++.++++
T Consensus       297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             ceEeecCcccccccCccccccccceeEEEec
Confidence            99999999864  667788889999988874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=4.6e-21  Score=143.13  Aligned_cols=89  Identities=21%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             HHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCccc-ccC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPDNC-ISA   78 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~   78 (183)
                      ..++.+++|++|++++|.+..+ |..+..+++|++|++++|.+++.    ..+..+++|++|++++|.+....+.. +..
T Consensus        73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  152 (455)
T 3v47_A           73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN  152 (455)
T ss_dssp             TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred             ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence            3456666677777776666654 45566666677777776666652    22566666666666666666554433 555


Q ss_pred             CCCCcEEEecCCcCc
Q psy13911         79 WSEMEELVLSGNGIS   93 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~   93 (183)
                      +++|+++++++|.+.
T Consensus       153 l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          153 MRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCCEEECTTCCBS
T ss_pred             CCcccEEeCCCCccc
Confidence            666666666665544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=4.8e-21  Score=149.48  Aligned_cols=176  Identities=18%  Similarity=0.208  Sum_probs=107.3

Q ss_pred             HHhhcCCCCcEEEccCCcCCC-cc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccc--ccCcccccC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM-LP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAIT--SLPDNCISA   78 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~   78 (183)
                      .+++.+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+...  ..+..+++|+.|++.+|.+.  ...+..+..
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            345556666666666666543 33 4455566666666666655443  34455555555555555544  223344566


Q ss_pred             CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC----------CccCCCcccEEeccCcccccccCCCCCC
Q psy13911         79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----------TLYLSSSLRVLDLSYNHLERLNLNTLIP  148 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~l~l~~n~l~~~~~~~~~~  148 (183)
                      +++|+.+++++|.++.++...+..+++|+.|++++|.+++++          .+..+++|+.|++++|.++.++...+..
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            666777777777776666655556667777777777665431          1455666777777777777666555444


Q ss_pred             -CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        149 -KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       149 -~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                       ++|++|++++|.++.+++..|.++++|+.|++
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence             66777777777777766666677777776665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=2.9e-21  Score=140.01  Aligned_cols=172  Identities=20%  Similarity=0.290  Sum_probs=152.1

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      ..|+.....+.+++.++.+|..+.  ++++.|++++|+++.+  ..+..+++|+.|++++|.++.+++..+..+++|+++
T Consensus        28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            456777778999999999997553  5899999999999988  468999999999999999999888889999999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC---ccCCCcccEEeccCc-ccccccCCCCCC-CCccEEEcCCCC
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT---LYLSSSLRVLDLSYN-HLERLNLNTLIP-KQLQYLDVSGNP  160 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~l~l~~n-~l~~~~~~~~~~-~~l~~l~l~~n~  160 (183)
                      ++++|.++.++...+..+++|++|++++|.++.++.   +..+++|++|++++| .++.++...+.. ++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999999887755588999999999999998764   778899999999998 588877666654 899999999999


Q ss_pred             ceeeCCCCcCCCcceeEEEEE
Q psy13911        161 RLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       161 ~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +++..+..+..+++|+.|+++
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEE
T ss_pred             cCccCHHHHhccccCCeecCC
Confidence            999999999999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=3.6e-22  Score=142.86  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=78.6

Q ss_pred             CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCC-CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccC
Q psy13911         57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY  135 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~  135 (183)
                      +|+.|++++|.++.+++..+..+++|+++++++|.++.++...+ ..+++|++|++++|.+++++....+++|+.|++++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence            34444444444444444445556666666666666665433222 24566777777777776665555567778888888


Q ss_pred             cccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        136 NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       136 n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |.+++++......++|++|++++|.++.+ |..+..+++|+.++++
T Consensus       201 N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          201 NKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLR  245 (317)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECT
T ss_pred             CcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEcc
Confidence            87777765533337788888888888876 5567778888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=4.9e-21  Score=147.62  Aligned_cols=175  Identities=22%  Similarity=0.258  Sum_probs=100.9

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccc-ccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAIT-SLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~L   82 (183)
                      .++.+++|+.|++++|.+..+|..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+. .+++..+..+++|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            46677788888888887777777777777777777777777665  35556666666666666554 3344445555666


Q ss_pred             cEEEecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCC-CCC-CCccEEEc
Q psy13911         83 EELVLSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNT-LIP-KQLQYLDV  156 (183)
Q Consensus        83 ~~l~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~-~~~-~~l~~l~l  156 (183)
                      +++++++|.+...+  ...+..+++|++|++++|.+.+.+  .+..+++|+.+++++|.+++..... +.. ++|++|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            66666666555442  222225555666666555554432  2444555555555555554433222 211 45555555


Q ss_pred             CCCCceeeCCCCcCCCcceeEEEE
Q psy13911        157 SGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       157 ~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      ++|.+++..+..+.++++|+.|++
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCccCCcCHHHHhCCCCCCEEEC
Confidence            555555554555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=4.2e-21  Score=147.88  Aligned_cols=173  Identities=27%  Similarity=0.373  Sum_probs=145.0

Q ss_pred             cCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          9 NSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .+++++.+++.++.+..+| ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+..+++..+..+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            4578899999999999988 4578899999999999999988  478999999999999999999998888999999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCC-----------------
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTL-----------------  146 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~-----------------  146 (183)
                      ++++|.++.+|...+..+++|+.|++++|.+++++  .++.+++|+.|++++|.+++++...+                 
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            99999999999988778999999999999999875  47888899999999988776532211                 


Q ss_pred             ------------------------------------------C-CCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        147 ------------------------------------------I-PKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       147 ------------------------------------------~-~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                                                                . .++|++|++++|.+++..|..|.++++|+.|+|+
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                                                      1 1566777777777777777777777777777663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.1e-21  Score=151.20  Aligned_cols=177  Identities=17%  Similarity=0.155  Sum_probs=127.5

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      +..+..++.|+.|++++|.+..+|..+..+++|+.|++++|.+...   ..+..+++|+.|++++|.+....+..+..++
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            4556677777777777777777777777777788888887776665   3566777888888888877776666677778


Q ss_pred             CCcEEEecCCcCcc-CCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911         81 EMEELVLSGNGISS-LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV  156 (183)
Q Consensus        81 ~L~~l~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l  156 (183)
                      +|+++++++|.+.. ..+..+..+++|+.|++++|.+++.+  .+..+++|+.|++++|.+++..+..+.. ++|++|++
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            88888888887775 22333347788888888888777653  3677778888888888887776555554 77888888


Q ss_pred             CCCCceeeCCCCcCCCc-ceeEEEEE
Q psy13911        157 SGNPRLHVDPNHFKSYR-SYVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~~~~~~~~~-~l~~l~l~  181 (183)
                      ++|.++.+++. +..++ +|+.++++
T Consensus       529 ~~N~l~~~p~~-~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          529 SFNRIETSKGI-LQHFPKSLAFFNLT  553 (606)
T ss_dssp             TTSCCCCEESC-GGGSCTTCCEEECC
T ss_pred             CCCcCcccCHh-HhhhcccCcEEEcc
Confidence            88888766444 76765 47777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=3.7e-21  Score=152.00  Aligned_cols=178  Identities=19%  Similarity=0.161  Sum_probs=119.2

Q ss_pred             HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      +..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.+.  ..+..+++|+.|++++|.+.+..+..+..++
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            3445555666666666665553 455566666666666666666544  3455666777777777766655555566677


Q ss_pred             CCcEEEecCCcCc-cCCCCC------------------------------------------------------------
Q psy13911         81 EMEELVLSGNGIS-SLPNTI------------------------------------------------------------   99 (183)
Q Consensus        81 ~L~~l~l~~~~l~-~~~~~~------------------------------------------------------------   99 (183)
                      +|+.+++++|.+. .+|..+                                                            
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            7777777776554 222211                                                            


Q ss_pred             ---------CCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCC
Q psy13911        100 ---------PQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus       100 ---------~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~  167 (183)
                               +..+++|+.|++++|.+++ +| .++.++.|+.|++++|.+++..+..+.. ++|++|++++|.+++..|.
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence                     1134567778888887775 44 4777888888888888888655555544 8888888888888888888


Q ss_pred             CcCCCcceeEEEEE
Q psy13911        168 HFKSYRSYVRVYIQ  181 (183)
Q Consensus       168 ~~~~~~~l~~l~l~  181 (183)
                      .+.+++.|+.|+++
T Consensus       699 ~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          699 AMSALTMLTEIDLS  712 (768)
T ss_dssp             GGGGCCCCSEEECC
T ss_pred             HHhCCCCCCEEECc
Confidence            88888888888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=3.8e-21  Score=138.30  Aligned_cols=176  Identities=24%  Similarity=0.263  Sum_probs=136.9

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccc--cCcccccCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS--LPDNCISAW   79 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~   79 (183)
                      +..++.+++|++|++++|.+..+|..+.  ++|++|++++|.+...  ..+..+++|+.|++++|.++.  ..+..+..+
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            5678889999999999999988875543  7888888888888777  346778888888888777752  333323322


Q ss_pred             --------------------CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcc
Q psy13911         80 --------------------SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNH  137 (183)
Q Consensus        80 --------------------~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~  137 (183)
                                          ++|+++++++|.++.++...+..+++|+.|++++|.+++++  .+..+++|+.|++++|.
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence                                46777777777777777655668899999999999999876  37888999999999999


Q ss_pred             cccccCCCCCCCCccEEEcCCCCceeeCCCCcCCC------cceeEEEEE
Q psy13911        138 LERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY------RSYVRVYIQ  181 (183)
Q Consensus       138 l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~------~~l~~l~l~  181 (183)
                      ++.++......++|++|++++|+++++++..|..+      ..|+.++++
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF  302 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence            99887654444899999999999999988888664      557777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2.1e-21  Score=140.36  Aligned_cols=167  Identities=25%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC----------------------CCCCCCCCEEeeC
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP----------------------LNKCRQLNTLHVA   64 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------~~~l~~L~~l~l~   64 (183)
                      +..+++|+++++.+|.+..++. +..+++|+.|++++|.+.....                      +..+++|+.|+++
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  229 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG  229 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence            4555556666666555555443 4455555555555555554433                      4444555555555


Q ss_pred             CccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCC
Q psy13911         65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLN  144 (183)
Q Consensus        65 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  144 (183)
                      +|.++..++  +..+++|+++++++|.++.++.  +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++.+..
T Consensus       230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          230 NNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCccCCCcc--hhcCCCCCEEECCCCccCCChh--HhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh
Confidence            555544433  4455555555555555554421  124555555555555555555455555566666666655554433


Q ss_pred             CCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       145 ~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      .+.. ++|++|++++|++++..+  +..+++|+.+++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             HhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence            3322 556666666666655544  555566665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=3.8e-21  Score=149.09  Aligned_cols=178  Identities=20%  Similarity=0.297  Sum_probs=134.8

Q ss_pred             HHHhhcCCC-CcEEEccCCcCCCccccccccc--cccEEEccCCCCCCC--CCCC-------CCCCCCEEeeCCcccccc
Q psy13911          4 ELFLQNSSK-LKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDI--GPLN-------KCRQLNTLHVAYNAITSL   71 (183)
Q Consensus         4 ~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~--~~~~-------~l~~L~~l~l~~~~~~~~   71 (183)
                      +..+..++. |+.|++++|.+..+|..+....  +|+.|++++|.+.+.  ..+.       .+++|+.|++++|.++.+
T Consensus       369 p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l  448 (636)
T 4eco_A          369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF  448 (636)
T ss_dssp             CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred             cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence            445677777 8888888888888887666544  788888888887765  3344       567888888888888887


Q ss_pred             CcccccCCCCCcEEEecCCcCccCCCCCCCCCC-------CccEEEeeCCcCCCCCC-cc--CCCcccEEeccCcccccc
Q psy13911         72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWP-------HLRVLRLHSNHLTSCPT-LY--LSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        72 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~-~~--~~~~L~~l~l~~n~l~~~  141 (183)
                      +...+..+++|+.+++++|.++.+|...+....       +|+.|++++|.++.+|. +.  .+++|+.|++++|.++++
T Consensus       449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i  528 (636)
T 4eco_A          449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF  528 (636)
T ss_dssp             CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred             CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc
Confidence            777677788888888888888888776653332       78888888888887764 43  778888888888888886


Q ss_pred             cCCCCCCCCccEEEc------CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        142 NLNTLIPKQLQYLDV------SGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       142 ~~~~~~~~~l~~l~l------~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +......++|++|++      ++|.+.+..|..+.++++|+.|+++
T Consensus       529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            544444478888888      4566677777888888888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=1.8e-20  Score=146.24  Aligned_cols=136  Identities=26%  Similarity=0.360  Sum_probs=92.2

Q ss_pred             HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ..++++++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+  ..|.++++|++|++++|.+..+++..+..+++
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            45677777777777777777653 5667777777888877777776  34777777888888777777777666777777


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCccccc
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n~l~~  140 (183)
                      |+++++++|.++..+...+..+++|++|++++|.+++.+.    ...+++|+.|++++|.+++
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            7888877777776655544467777777777776665431    1223455555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.4e-20  Score=145.14  Aligned_cols=170  Identities=24%  Similarity=0.266  Sum_probs=147.3

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|++++|.+.+++ ..+.++++|+.|++++|.++.+  .+|.++++|++|++++|.++..++..+..+++|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67999999999999876 5889999999999999999887  56889999999999999999988888999999999999


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CC----ccEEEcCCC
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQ----LQYLDVSGN  159 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~----l~~l~l~~n  159 (183)
                      ++|.+..++...+..+++|++|++++|.+++  +| .++.+++|++|++++|.++++++..+.. .+    +.++++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999998886656689999999999999885  45 4888999999999999999887665543 22    458999999


Q ss_pred             CceeeCCCCcCCCcceeEEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .++.+++..+... +|+.++++
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~  212 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLR  212 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEE
T ss_pred             CcceeCcccccCc-eeeeeecc
Confidence            9999988888766 88888875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.86  E-value=1.7e-21  Score=135.92  Aligned_cols=150  Identities=23%  Similarity=0.321  Sum_probs=103.9

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +..+++|+.|++++|.+..++ .+..+++|+.|++++|+++....+..+++|+.|++++|.++.++..  .. ++|++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc--cc-CcccEEE
Confidence            456677777777777777766 5666777777777777777774477777777777777777765542  22 6777777


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      +++|.++.++.  +..+++|+.|++++|.+++++.+..+++|+.|++++|.++++  ..+.. ++|+.|++++|++++.
T Consensus       113 L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCccCCChh--hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77777776642  236777777777777777776666777777777777777776  22222 6777777777777655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=4.7e-21  Score=151.41  Aligned_cols=175  Identities=26%  Similarity=0.283  Sum_probs=101.7

Q ss_pred             HhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      .++.+++|+.|++.+|.+.+ +|..+..+++|+.|++++|++.+.  ..+.++++|+.|++++|.+....+..+..+++|
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            34444455555555554442 344455555555555555555543  335555666666666666665545555666666


Q ss_pred             cEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC----------------------------------------
Q psy13911         83 EELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP----------------------------------------  120 (183)
Q Consensus        83 ~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~----------------------------------------  120 (183)
                      +.+++++|.+. .+|..+ ..+++|+.|++++|.+++ +|                                        
T Consensus       517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            66666666665 333333 256666666666665542 12                                        


Q ss_pred             -------------------------------CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCC
Q psy13911        121 -------------------------------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNH  168 (183)
Q Consensus       121 -------------------------------~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~  168 (183)
                                                     .++.+++++.+++++|.+++..+..+.. +.|+.|++++|.+++..|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                           0122345667777777776554444433 77778888888887777777


Q ss_pred             cCCCcceeEEEEE
Q psy13911        169 FKSYRSYVRVYIQ  181 (183)
Q Consensus       169 ~~~~~~l~~l~l~  181 (183)
                      +.+++.|+.|+|+
T Consensus       676 l~~L~~L~~LdLs  688 (768)
T 3rgz_A          676 VGDLRGLNILDLS  688 (768)
T ss_dssp             GGGCTTCCEEECC
T ss_pred             HhCCCCCCEEECC
Confidence            8888888877764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.86  E-value=2.2e-21  Score=129.87  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=103.8

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|+.|+++++.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.++...+..+..+++|+++++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45567777777777777766 56677777778877776666666677777777777777777644445777777777777


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH  163 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~  163 (183)
                      ++|.++......+..+++|++|++++|. ++.++.+..+++|+.|++++|.+++++ .....++|++|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            7777765222222366777777777776 666666777777777777777777754 11122677777777776643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=4.4e-21  Score=138.66  Aligned_cols=172  Identities=19%  Similarity=0.252  Sum_probs=124.8

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCc-------------
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPD-------------   73 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-------------   73 (183)
                      +..+++|+.+++++|........+..+++|+.|++++|.+.....+..+++|+.+++++|.+..+++             
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  207 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY  207 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence            7889999999999996555444588899999999999999888668889999999999998876553             


Q ss_pred             -------ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCC
Q psy13911         74 -------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL  146 (183)
Q Consensus        74 -------~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~  146 (183)
                             ..+..+++|+++++++|.++.++.  +..+++|++|++++|.+++++.+..+++|+.+++++|.+++++. ..
T Consensus       208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~  284 (347)
T 4fmz_A          208 VNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV-LN  284 (347)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             cCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChh-hc
Confidence                   003344556666666666655544  23566777777777776666666667777777777777776531 11


Q ss_pred             CCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        147 IPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       147 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ..+++++|++++|.+++..+..+.++++|+.|+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            22777888888887777767777777888777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=2e-21  Score=146.28  Aligned_cols=169  Identities=23%  Similarity=0.202  Sum_probs=101.1

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCc------------------------
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN------------------------   66 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~------------------------   66 (183)
                      +|+.|++++|.+..++ ..+..+++|+.|++++|.+.+..++..+++|+.|++++|                        
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~  114 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence            5666666666666544 455666666666666666554433444444544444444                        


Q ss_pred             ----------------cccccCcccccCCCCCcEEEecCCcCccCCCCCC-CCCCCccEEEeeCCcCCCCCCccCCCccc
Q psy13911         67 ----------------AITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLR  129 (183)
Q Consensus        67 ----------------~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~  129 (183)
                                      .++..++..+..+++|++|++++|.++..+...+ ..+++|+.|++++|.+++++....+++|+
T Consensus       115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~  194 (487)
T 3oja_A          115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK  194 (487)
T ss_dssp             EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCC
T ss_pred             CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCC
Confidence                            4444434445555666666666666654333222 24566666666666666665555566777


Q ss_pred             EEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       130 ~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .|++++|.++++++.....++|+.|++++|.++++ |..+..+++|+.++++
T Consensus       195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLR  245 (487)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECT
T ss_pred             EEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcC
Confidence            77777777777655533337777777777777775 4456777777777653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=2.3e-20  Score=144.22  Aligned_cols=168  Identities=27%  Similarity=0.266  Sum_probs=131.0

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .+++|++++|.++.++ ..|.++++|+.|++++|+++.+  .+|.++++|++|++++|.++.+++..|..+++|++|++.
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            6888899888888876 5788888899999998888887  568888889999998888888888888888889999998


Q ss_pred             CCcCccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCCC-----CCccEEEcCCCC
Q psy13911         89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLIP-----KQLQYLDVSGNP  160 (183)
Q Consensus        89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-----~~l~~l~l~~n~  160 (183)
                      +|.++.++...+..+++|++|++++|.++++  | .++.++.|++|++++|.++++....+..     .....++++.|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            8888888877776888889999988888764  3 3567788888898888888776554432     334567888888


Q ss_pred             ceeeCCCCcCCCcceeEEEE
Q psy13911        161 RLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       161 ~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +..+.+..+... .+..+++
T Consensus       213 l~~i~~~~~~~~-~~~~l~l  231 (635)
T 4g8a_A          213 MNFIQPGAFKEI-RLHKLTL  231 (635)
T ss_dssp             CCEECTTTTTTC-EEEEEEE
T ss_pred             ccccCcccccch-hhhhhhh
Confidence            888776666544 3344443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=2.3e-20  Score=126.93  Aligned_cols=149  Identities=23%  Similarity=0.339  Sum_probs=128.2

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      +.++++++.++.+|..+  ...++.|++++|.++..   ..+..+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            58899999999988655  34568999999999887   34788999999999999999988878999999999999999


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      .++.++...+..+++|++|++++|.+++++  .+..+++|+.|++++|.++++++..+.. ++|++|++++|++.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999888876668899999999999999873  4788899999999999999987766665 8899999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=7.5e-21  Score=146.62  Aligned_cols=135  Identities=20%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             HhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      .|+.+++|++|++++|.+..+ |..|..+++|++|++++|++...  ..+.++++|++|++++|.++.+.+..+..+++|
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            455556666666666655554 34555566666666666655544  345555666666666666555544445555666


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc--EEeccCccccc
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR--VLDLSYNHLER  140 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~--~l~l~~n~l~~  140 (183)
                      +++++++|.+..++...+..+++|+.|++++|.+++++  .++.+++++  .+++++|.+++
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            66666666555543221113555666666665555432  133334444  44444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.9e-20  Score=143.32  Aligned_cols=170  Identities=27%  Similarity=0.284  Sum_probs=148.8

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.|++++|.+..++ ..+..+++|+.|++++|+++.+  .+|.++++|++|++++|.++.+++..+..+++|+++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47899999999999876 6789999999999999999887  56889999999999999999988888999999999999


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCc----cEEEcCCC
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQL----QYLDVSGN  159 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l----~~l~l~~n  159 (183)
                      .+|.++.++...+..+++|++|++++|.+++  +| .++.+++|+.|++++|.+++++...+.. .++    ..+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999999887666689999999999999886  35 4888999999999999998876655443 555    78999999


Q ss_pred             CceeeCCCCcCCCcceeEEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .++++.+..+..+ +|+.++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~  208 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLR  208 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecc
Confidence            9999999888877 78888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=8.2e-21  Score=128.04  Aligned_cols=148  Identities=25%  Similarity=0.316  Sum_probs=91.7

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      +.++..++.+..+|..+  .++++.|++++|+++.+  ..+..+++|++|++++|.++.+++..+..+++|+++++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45566666666665433  34666666666666655  235566666666666666666666555666666666666666


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      ++.++...+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+++++...+.. +++++|++++|++.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            666665554466666666666666666542  555666666666666666665544433 666666666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.5e-19  Score=121.79  Aligned_cols=158  Identities=30%  Similarity=0.393  Sum_probs=136.7

Q ss_pred             CCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911         10 SSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      .+.+++|++++|.+..++ ..+..+++|+.|++++|+++.+  ..+..+++|++|++++|.++.+++..+..+++|++++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            457999999999999887 5578899999999999999988  4478899999999999999998888788999999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV  164 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~  164 (183)
                      +++|.++.++...+..+++|+.|++++|.+++++.  +..+++|+.+++++|.+...      .++++.|++..|.+++.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCce
Confidence            99999999988877689999999999999998763  77889999999999976542      26788888888888877


Q ss_pred             CCCCcCCCc
Q psy13911        165 DPNHFKSYR  173 (183)
Q Consensus       165 ~~~~~~~~~  173 (183)
                      .|..++.++
T Consensus       181 ip~~~~~l~  189 (208)
T 2o6s_A          181 VRNSAGSVA  189 (208)
T ss_dssp             BBCTTSSBC
T ss_pred             eeccCcccc
Confidence            777666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=2.5e-21  Score=150.07  Aligned_cols=138  Identities=15%  Similarity=0.192  Sum_probs=95.4

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC------------------cccccc--ccccccEEEccCCCCCCC--CCCCCCCCCCE
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM------------------LPSLNN--ENRYLEKLYLTSNALTDI--GPLNKCRQLNT   60 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~   60 (183)
                      ++..++++++|++|++++|.+++                  +|..+.  .+++|+.|++++|.+.+.  ..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            45678889999999999998888                  888877  888999999998887665  56778888888


Q ss_pred             EeeCCcc-ccc-cCcccccCC------CCCcEEEecCCcCccCCC--CCCCCCCCccEEEeeCCcCC-CCCCccCCCccc
Q psy13911         61 LHVAYNA-ITS-LPDNCISAW------SEMEELVLSGNGISSLPN--TIPQSWPHLRVLRLHSNHLT-SCPTLYLSSSLR  129 (183)
Q Consensus        61 l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~  129 (183)
                      |++++|. ++. ..+..+..+      ++|+++++++|.++.+|.  .+. .+++|+.|++++|.++ .+|.++.+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence            8888887 664 223334443      677777777777776665  333 6666777777777666 444444444555


Q ss_pred             EEeccCcccccc
Q psy13911        130 VLDLSYNHLERL  141 (183)
Q Consensus       130 ~l~l~~n~l~~~  141 (183)
                      .|++++|.++.+
T Consensus       357 ~L~L~~N~l~~l  368 (636)
T 4eco_A          357 SLNLAYNQITEI  368 (636)
T ss_dssp             EEECCSSEEEEC
T ss_pred             EEECCCCccccc
Confidence            555555544433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=5.1e-21  Score=151.97  Aligned_cols=176  Identities=16%  Similarity=0.174  Sum_probs=112.8

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC------------------cccccc--ccccccEEEccCCCCCCC--CCCCCCCCCCE
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM------------------LPSLNN--ENRYLEKLYLTSNALTDI--GPLNKCRQLNT   60 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~   60 (183)
                      +|..++++++|+.|++++|.+.+                  +|..+.  .+++|+.|++++|.+.+.  ..+.++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            55677888888888888888887                  777665  788888888888876555  45677777777


Q ss_pred             EeeCCcc-ccc-cCccccc-------CCCCCcEEEecCCcCccCCC--CCCCCCCCccEEEeeCCcCCCCCCccCCCccc
Q psy13911         61 LHVAYNA-ITS-LPDNCIS-------AWSEMEELVLSGNGISSLPN--TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLR  129 (183)
Q Consensus        61 l~l~~~~-~~~-~~~~~~~-------~~~~L~~l~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~  129 (183)
                      |++++|. ++. ..|..+.       .+++|++|++++|.++.+|.  .+. .+++|+.|++++|.++.+|.++.+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHLEAFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcccchhhcCCCcce
Confidence            7777776 654 2222233       23367777777777776665  333 6667777777777666666666666777


Q ss_pred             EEeccCcccccccCCCCCCCC-ccEEEcCCCCceeeCCCCcCCCcc--eeEEEE
Q psy13911        130 VLDLSYNHLERLNLNTLIPKQ-LQYLDVSGNPRLHVDPNHFKSYRS--YVRVYI  180 (183)
Q Consensus       130 ~l~l~~n~l~~~~~~~~~~~~-l~~l~l~~n~~~~~~~~~~~~~~~--l~~l~l  180 (183)
                      .|++++|.++.++......++ |++|++++|.++.+ |..+..++.  |+.|++
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEEC
T ss_pred             EEECcCCccccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEEC
Confidence            777777766654433222245 66666666666643 444444322  555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=7.5e-21  Score=145.54  Aligned_cols=174  Identities=21%  Similarity=0.264  Sum_probs=132.8

Q ss_pred             hcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCc-ccccCCCCC
Q psy13911          8 QNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPD-NCISAWSEM   82 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L   82 (183)
                      ..+++|+.|++++|.+...   +..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...++ ..+..+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            4567778888887777754   45566778888888888877666 337778888888888888776544 457778888


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG  158 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~  158 (183)
                      +++++++|.+.......+..+++|+.|++++|.+++  +| .+..+++|+.|++++|.++++.+..+.. ++|++|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            888888888877666655578888888888887762  44 4777788888888888888876665554 7888888888


Q ss_pred             CCceeeCCCCcCCCcceeEEEEE
Q psy13911        159 NPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       159 n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |.++++++..+.++++|+.++++
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcCCCCCHHHhhcccCCcEEEec
Confidence            88888877888888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=2.9e-20  Score=141.78  Aligned_cols=167  Identities=25%  Similarity=0.321  Sum_probs=107.5

Q ss_pred             hcCCCCcEEEccCCcCCC-cc---ccccccccccEEEccCCCCCCCC----CCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911          8 QNSSKLKVLNISKNCLKM-LP---SLNNENRYLEKLYLTSNALTDIG----PLNKCRQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      +.+++|+.|++++|.+.+ ++   ..+..+++|+.|++++|+++...    .+..+++|+.|++++|.++.++.. +..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hccc
Confidence            345555555555555554 11   22444555555555555555441    244555666666666655544432 4455


Q ss_pred             CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCC
Q psy13911         80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN  159 (183)
Q Consensus        80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n  159 (183)
                      ++|+++++++|.++.++..+.   ++|+.|++++|.+++.+  ..+++|++|++++|.++.++.. ...++|++|++++|
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~-~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRN  483 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTSC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCG-GGCTTCCEEECCSS
T ss_pred             ccccEEECCCCCcccccchhc---CCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCc-ccCccCCEEecCCC
Confidence            556666666666555544332   45666666666666543  4678899999999999987653 23489999999999


Q ss_pred             CceeeCCCCcCCCcceeEEEEE
Q psy13911        160 PRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .+++.++..+..+++|+.++++
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          484 QLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECC
T ss_pred             ccCCcCHHHHhcCcccCEEEec
Confidence            9999988899999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=1.5e-20  Score=144.52  Aligned_cols=152  Identities=23%  Similarity=0.316  Sum_probs=78.3

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ++.+++|+.|++++|.+..++. +..+++|+.|++++|.+.....+..+++|+.|++++|.+..++.  +..+++|+.|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~  137 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY  137 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEE
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEE
Confidence            4455555555555555555444 44555555555555555555555555555555555555554321  44555555555


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV  164 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~  164 (183)
                      +++|.++.++ .+ ..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|+.|++++|++.+.
T Consensus       138 Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          138 LGNNKITDIT-VL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCCG-GG-GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSEEEECC
T ss_pred             CCCCccCCch-hh-cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCCcCcCC
Confidence            5555555441 11 2455555555555555554335555555555555555555421 11125555555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1e-20  Score=146.21  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=138.5

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      ..++..+.+++.+|..+  .++++.|++++|+++.+  .+|.++++|++|++++|.++.+++++|..+++|++|++++|.
T Consensus        34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            35666777888898665  35799999999999998  579999999999999999999999889999999999999999


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCC-C-CCCccEEEcCCCCceeeCCC
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTL-I-PKQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~-~-~~~l~~l~l~~n~~~~~~~~  167 (183)
                      ++.++..++..+++|++|++++|.+++++  .++.+++|++|++++|.++.+..... . .++|++|++++|.++++.+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            99999888779999999999999999986  48899999999999999987654332 2 28999999999999999887


Q ss_pred             CcCCCcce
Q psy13911        168 HFKSYRSY  175 (183)
Q Consensus       168 ~~~~~~~l  175 (183)
                      .+..++.+
T Consensus       192 ~l~~L~~l  199 (635)
T 4g8a_A          192 DLRVLHQM  199 (635)
T ss_dssp             GGHHHHTC
T ss_pred             cccchhhh
Confidence            77655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=1.6e-20  Score=132.78  Aligned_cols=155  Identities=23%  Similarity=0.273  Sum_probs=135.6

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .++.+++|+.|++++|.+..++. +..+++|+.|++++|.++....+..+++|+.|++++|.+..++  .+..+++|+.+
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L  139 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESL  139 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEE
T ss_pred             hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEE
Confidence            37789999999999999999887 8899999999999999999877899999999999999999863  38889999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                      ++++|.++.++ . +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|+.|++++|++++.+
T Consensus       140 ~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          140 YLGNNKITDIT-V-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ECCSSCCCCCG-G-GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             EccCCcCCcch-h-hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            99999998873 3 33789999999999999988778889999999999999999753 222389999999999887654


Q ss_pred             C
Q psy13911        166 P  166 (183)
Q Consensus       166 ~  166 (183)
                      .
T Consensus       217 ~  217 (291)
T 1h6t_A          217 I  217 (291)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=3.9e-20  Score=146.95  Aligned_cols=176  Identities=22%  Similarity=0.292  Sum_probs=121.3

Q ss_pred             HhhcCCC-CcEEEccCCcCCCcccccccccc--ccEEEccCCCCCCC-CCCC------CCCCCCEEeeCCccccccCccc
Q psy13911          6 FLQNSSK-LKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDI-GPLN------KCRQLNTLHVAYNAITSLPDNC   75 (183)
Q Consensus         6 ~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~-~~~~------~l~~L~~l~l~~~~~~~~~~~~   75 (183)
                      .+..+++ |+.|++++|.+..+|..+...+.  |+.|++++|++.+. +.+.      .+++|+.|++++|.+..++...
T Consensus       613 ~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~  692 (876)
T 4ecn_A          613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL  692 (876)
T ss_dssp             TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred             HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH
Confidence            3445555 55566665555555544444332  56666666655443 1111      2346778888888888777665


Q ss_pred             ccCCCCCcEEEecCCcCccCCCCCCCCC-------CCccEEEeeCCcCCCCCC-cc--CCCcccEEeccCcccccccCCC
Q psy13911         76 ISAWSEMEELVLSGNGISSLPNTIPQSW-------PHLRVLRLHSNHLTSCPT-LY--LSSSLRVLDLSYNHLERLNLNT  145 (183)
Q Consensus        76 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~-~~--~~~~L~~l~l~~n~l~~~~~~~  145 (183)
                      +..+++|+.|++++|.++.+|...+...       ++|+.|++++|.++.+|. +.  .+++|+.|++++|.+++++...
T Consensus       693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l  772 (876)
T 4ecn_A          693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP  772 (876)
T ss_dssp             HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred             HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence            6678888999999888888887766332       288899999988887774 44  7788999999999888875544


Q ss_pred             CCCCCccEEEcCC------CCceeeCCCCcCCCcceeEEEEE
Q psy13911        146 LIPKQLQYLDVSG------NPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       146 ~~~~~l~~l~l~~------n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ...++|+.|++++      |.+.+..|..+.++++|+.|+|+
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence            4448888888866      66677778888888888888774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=1.4e-20  Score=131.20  Aligned_cols=163  Identities=19%  Similarity=0.250  Sum_probs=140.3

Q ss_pred             CCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      +..+..+++.++.+.+++ .+..+++|+.|++++|.++.+..+..+++|+.|++++|.++.+++  +..+++|+++++++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334555677888888877 577899999999999999988888889999999999999998876  88899999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCc
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF  169 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  169 (183)
                      |.++.++...  . ++|+.|++++|.+++++.+..+++|+.|++++|.+++++ .....++|++|++++|.+++.  ..+
T Consensus        95 N~l~~l~~~~--~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A           95 NRLKNLNGIP--S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             SCCSCCTTCC--C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             CccCCcCccc--c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHh
Confidence            9999887643  3 889999999999999888889999999999999999875 222238999999999999987  778


Q ss_pred             CCCcceeEEEEE
Q psy13911        170 KSYRSYVRVYIQ  181 (183)
Q Consensus       170 ~~~~~l~~l~l~  181 (183)
                      ..+++|+.|+++
T Consensus       169 ~~l~~L~~L~l~  180 (263)
T 1xeu_A          169 TRLKKVNWIDLT  180 (263)
T ss_dssp             TTCCCCCEEEEE
T ss_pred             ccCCCCCEEeCC
Confidence            899999999885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=6.9e-20  Score=137.34  Aligned_cols=129  Identities=26%  Similarity=0.362  Sum_probs=57.1

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      ..+++|+.|++++|.+..++. +..+++|+.|++++|.+...+.+..+++|+.|++++|.+...++  +..+++|+.+++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  272 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence            334444444444444433322 23344444444444444444334444445555555544444333  444445555555


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccc
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      ++|.++.++.  +..+++|+.|++++|.+++++.+..+++|+.|++++|.++++
T Consensus       273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred             CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence            5554444333  123444445555444444443344444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.3e-20  Score=137.00  Aligned_cols=159  Identities=22%  Similarity=0.266  Sum_probs=112.9

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCC-CCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLN-KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      +.+++.++.+..+|..+.  ..++.|++++|+++.+  ..+. .+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            467777777777775432  4567777877777776  3454 6777788888777777777666777777888888877


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCC----CCCccEEEcCCCCceee
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLI----PKQLQYLDVSGNPRLHV  164 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~----~~~l~~l~l~~n~~~~~  164 (183)
                      .++.++...+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++...+.    .++|+.|++++|.++.+
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            777777766667777788888777777653  466777777888887777777665542    26777778877777776


Q ss_pred             CCCCcCCCcc
Q psy13911        165 DPNHFKSYRS  174 (183)
Q Consensus       165 ~~~~~~~~~~  174 (183)
                      ++..+..++.
T Consensus       179 ~~~~~~~l~~  188 (361)
T 2xot_A          179 PLTDLQKLPA  188 (361)
T ss_dssp             CHHHHHHSCH
T ss_pred             CHHHhhhccH
Confidence            6555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=5.3e-20  Score=140.34  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=78.7

Q ss_pred             CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911         12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .++.|++++|.+..++ ..+..+++|++|++++|++...  .++..+++|++|++++|.+...++..+..+++|++++++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            4555555555555432 3444555555555555555444  234455555555555555555444444555555555555


Q ss_pred             CCcCccCCC-CCCCCCCCccEEEeeCCc-CCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911         89 GNGISSLPN-TIPQSWPHLRVLRLHSNH-LTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus        89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      +|.++.++. ..+..+++|++|++++|. +..++  .+..+++|++|++++|.+++..+..+.. +++++|++++|.+..
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            555543211 122244555555555554 33332  2444455555555555554443333332 445555555554433


Q ss_pred             eCCCCcCCCcceeEEEE
Q psy13911        164 VDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       164 ~~~~~~~~~~~l~~l~l  180 (183)
                      ++...+..+++|+.|++
T Consensus       187 ~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          187 LLEIFADILSSVRYLEL  203 (549)
T ss_dssp             HHHHHHHSTTTBSEEEE
T ss_pred             cchhhHhhcccccEEEc
Confidence            32222233455555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=1e-19  Score=139.95  Aligned_cols=167  Identities=23%  Similarity=0.271  Sum_probs=147.0

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +..++.|+.|++.++.+..++ .+..+++|+.|++++|++..+..+..+++|+.|++++|.+..++  .+..+++|+.|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~  115 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEE
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCEEE
Confidence            356788999999999999887 47889999999999999999866899999999999999998865  388899999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~  166 (183)
                      +++|.+..++. + ..+++|+.|++++|.+++++.+..+++|+.|++++|.++++++ ....++|+.|++++|.++++  
T Consensus       116 Ls~N~l~~l~~-l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--  190 (605)
T 1m9s_A          116 LEHNGISDING-L-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--  190 (605)
T ss_dssp             CTTSCCCCCGG-G-GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred             ecCCCCCCCcc-c-cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence            99999988753 3 3789999999999999998888999999999999999998866 33338999999999999986  


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                      ..+..+++|+.|+|+
T Consensus       191 ~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          191 RALAGLKNLDVLELF  205 (605)
T ss_dssp             GGGTTCTTCSEEECC
T ss_pred             hHHccCCCCCEEEcc
Confidence            468899999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.7e-19  Score=135.19  Aligned_cols=167  Identities=17%  Similarity=0.258  Sum_probs=128.7

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ++.+++|+.|++++|.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.+...++  +..+++|+.++
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  293 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLE  293 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence            567888888998888888764 456788888888888888887667788888888888888887655  67788888888


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~  166 (183)
                      +++|.++.++.  +..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++ .....++|+.|++++|++++..|
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence            88888877655  2367888888888888887766777788888888888887763 11222788888888888877755


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                        +..+++|+.|+++
T Consensus       371 --~~~l~~L~~L~l~  383 (466)
T 1o6v_A          371 --LANLTRITQLGLN  383 (466)
T ss_dssp             --GTTCTTCCEEECC
T ss_pred             --hhcCCCCCEEecc
Confidence              7778888877763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=4.8e-19  Score=132.43  Aligned_cols=161  Identities=21%  Similarity=0.228  Sum_probs=98.3

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ++.++.|+.|++++|.+.++| .+..+++|+.|++++|.+++++ +..+++|++|++++|.++.++   +..+++|++++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~  112 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN  112 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence            455677777777777777765 4666777777777777777653 666777777777777766652   55666777777


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---------------------CccCCCcccEEeccCcccccccCCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---------------------TLYLSSSLRVLDLSYNHLERLNLNT  145 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~~L~~l~l~~n~l~~~~~~~  145 (183)
                      +++|.++.++   +..+++|+.|++++|.+++++                     .+..+++|+.|++++|.+++++  .
T Consensus       113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l  187 (457)
T 3bz5_A          113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--V  187 (457)
T ss_dssp             CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--C
T ss_pred             CCCCcCCeec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--c
Confidence            7777666654   235666666666666666543                     2333444555555555555543  1


Q ss_pred             CCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        146 LIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       146 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      ...++++.|++++|.++++   .+..+++|+.|++
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence            1115555566665555554   2555566666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=3.6e-19  Score=121.01  Aligned_cols=143  Identities=22%  Similarity=0.301  Sum_probs=127.6

Q ss_pred             cEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911         37 EKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH  115 (183)
Q Consensus        37 ~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  115 (183)
                      +.++++++.++.++. +  .++++.|++++|.++.+++..+..+++|+.|++++|.++.+....+..+++|+.|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            578888888888732 3  2689999999999999988889999999999999999998877767789999999999999


Q ss_pred             CCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        116 LTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       116 ~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++.++.  +..+++|+.|++++|.++++++..+.. ++|++|++++|.++.+++..|..+++|+.++++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            999874  788899999999999999998777765 899999999999999988999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=2e-20  Score=133.47  Aligned_cols=170  Identities=21%  Similarity=0.181  Sum_probs=137.3

Q ss_pred             cCCCCcEEEccCCcCCC-ccccc--cccccccEEEccCCCCCCC-CCCCCC-----CCCCEEeeCCccccccCcccccCC
Q psy13911          9 NSSKLKVLNISKNCLKM-LPSLN--NENRYLEKLYLTSNALTDI-GPLNKC-----RQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      .+++|++|++++|.+.+ +|..+  ..+++|+.|++++|++++. ..+..+     ++|++|++++|.+...++..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            68999999999999985 67554  8899999999999999887 223333     899999999999999988889999


Q ss_pred             CCCcEEEecCCcCcc---CCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCcccccccC-CCCC-C
Q psy13911         80 SEMEELVLSGNGISS---LPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLERLNL-NTLI-P  148 (183)
Q Consensus        80 ~~L~~l~l~~~~l~~---~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~~-~~~~-~  148 (183)
                      ++|+++++++|.+..   ++. ..+..+++|++|++++|.+++++.     +..+++|+.|++++|.+++.++ ..+. .
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            999999999998653   222 222478999999999999986432     3466899999999999998663 3333 3


Q ss_pred             CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        149 KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       149 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++|++|++++|.++.+ |..+.  ++|+.|+++
T Consensus       253 ~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls  282 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLS  282 (312)
T ss_dssp             TTCCEEECTTSCCSSC-CSSCC--SEEEEEECC
T ss_pred             CCCCEEECCCCccChh-hhhcc--CCceEEECC
Confidence            8999999999999966 44444  889998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=5.9e-20  Score=133.58  Aligned_cols=154  Identities=26%  Similarity=0.285  Sum_probs=132.4

Q ss_pred             CCCcEEEccCCcCCCcc-cccc-ccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNN-ENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +.++.|++++|.+..++ ..+. .+++|+.|++++|+++.+  ..|..+++|+.|++++|.++.+++..+..+++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            45899999999999977 5565 899999999999999988  5689999999999999999999888899999999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--c---cCCCcccEEeccCcccccccCCCCCC-CC--ccEEEcCC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--L---YLSSSLRVLDLSYNHLERLNLNTLIP-KQ--LQYLDVSG  158 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~l~l~~n~l~~~~~~~~~~-~~--l~~l~l~~  158 (183)
                      +++|.+..++...+..+++|+.|++++|.++.+|.  +   ..+++|+.|++++|.++.++...+.. +.  ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999999887777789999999999999999874  3   56889999999999999887544332 33  47899999


Q ss_pred             CCceee
Q psy13911        159 NPRLHV  164 (183)
Q Consensus       159 n~~~~~  164 (183)
                      |++.+.
T Consensus       199 N~~~C~  204 (361)
T 2xot_A          199 NPLECD  204 (361)
T ss_dssp             SCEECC
T ss_pred             CCccCC
Confidence            998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=3.9e-19  Score=136.10  Aligned_cols=149  Identities=24%  Similarity=0.233  Sum_probs=121.8

Q ss_pred             cccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCc--ccccCCCCCcEEEecCCcCcc-CCCCCCCCCCC
Q psy13911         31 NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPD--NCISAWSEMEELVLSGNGISS-LPNTIPQSWPH  105 (183)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~~  105 (183)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++.++.  ..+..+++|+++++++|.++. ++...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5677889999999988875  667888999999999998887653  447788899999999999887 87776668889


Q ss_pred             ccEEEeeCCcCCCC-CC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        106 LRVLRLHSNHLTSC-PT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       106 L~~L~l~~~~~~~~-~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |+.|++++|.+++. +. +.  ++|+.|++++|.++.++...+..++|++|++++|.++.+++..+..+++|+.++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            99999999988753 21 22  68999999999999888777655899999999999998866678899999988874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=3.9e-19  Score=134.84  Aligned_cols=170  Identities=21%  Similarity=0.237  Sum_probs=131.7

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccC--cccccCCCCCcEEE
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLP--DNCISAWSEMEELV   86 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~l~   86 (183)
                      .+++.|++++|.+..++. ...+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+..++  +..+..+++|++++
T Consensus       302 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred             CceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence            456666666666554331 25678899999999998884  66788899999999999888643  24578889999999


Q ss_pred             ecCCcCcc-CCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         87 LSGNGISS-LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        87 l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                      +++|.++. +|...+..+++|+.|++++|.+++.......++|+.|++++|.++.++......++|++|++++|.++.++
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence            99999987 87766667889999999999886532111116899999999999987766665589999999999999876


Q ss_pred             CCCcCCCcceeEEEEE
Q psy13911        166 PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       166 ~~~~~~~~~l~~l~l~  181 (183)
                      +..+.++++|+.++++
T Consensus       461 ~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TTTTTTCTTCCEEECC
T ss_pred             HHHhccCCcccEEECc
Confidence            6678899999998874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.1e-18  Score=119.26  Aligned_cols=147  Identities=22%  Similarity=0.220  Sum_probs=128.7

Q ss_pred             ccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         34 RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      ..-+.++.+++++..++. .-.++|+.|++++|.++.+.+..+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus        19 Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             EETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345678899888888733 1248999999999999999888899999999999999999999988777899999999999


Q ss_pred             CcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        114 NHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       114 ~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      |.+++++.  +..+++|+.|++++|.++.++......++|++|++++|.++.+++..+..+++|+.|+++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            99998864  788999999999999999887655445999999999999999988899999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=3.9e-19  Score=141.74  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCc-cccc
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPD-NCIS   77 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~-~~~~   77 (183)
                      +..++++++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+.    ..+.++++|++|++++|.+....+ ..+.
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            34566777777777777776664 46666666677777776666542    225566666666666666554432 2355


Q ss_pred             CCCCCcEEEecCCc
Q psy13911         78 AWSEMEELVLSGNG   91 (183)
Q Consensus        78 ~~~~L~~l~l~~~~   91 (183)
                      .+++|++|++++|.
T Consensus       146 ~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TCSSCCEEEEESSC
T ss_pred             hCCCCCEEECCCCc
Confidence            55555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=2.2e-18  Score=128.88  Aligned_cols=164  Identities=21%  Similarity=0.214  Sum_probs=123.1

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .++.+++|++|++++|.+++++  +..+++|+.|++++|.+++.+ +..+++|++|++++|.++.++   +..+++|+++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L  132 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYL  132 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred             hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEE
Confidence            4677888888888888888775  667777888888887777663 666777777777777766642   5566666666


Q ss_pred             EecCCcCccCCCC-------------------CCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCC
Q psy13911         86 VLSGNGISSLPNT-------------------IPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL  146 (183)
Q Consensus        86 ~l~~~~l~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~  146 (183)
                      ++++|.++.++..                   .+..+++|+.|++++|.++++| +..+++|+.+++++|.+++++.  .
T Consensus       133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l--~  209 (457)
T 3bz5_A          133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDL--N  209 (457)
T ss_dssp             ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCC--T
T ss_pred             ECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeecc--c
Confidence            6666665543211                   1235678888899888888887 7888999999999999998742  2


Q ss_pred             CCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        147 IPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       147 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ..++|++|++++|.+++++   +..+++|+.|+++
T Consensus       210 ~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~  241 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCS  241 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC
T ss_pred             cCCCCCEEECcCCcccccC---ccccCCCCEEEee
Confidence            2389999999999999963   7889999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.3e-18  Score=118.34  Aligned_cols=145  Identities=17%  Similarity=0.207  Sum_probs=126.6

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccC-cccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911         36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN  114 (183)
Q Consensus        36 L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  114 (183)
                      -+.++++++.++.++. .-...++.|++++|.++.++ ...+..+++|+.|++++|.++.++...+..+++|++|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            3589999999888732 11346789999999999884 456888999999999999999998877779999999999999


Q ss_pred             cCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        115 HLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .+++++.  +..+++|++|++++|.++++++..+.. ++|++|++++|.++++.+..|..+++|+.|+++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            9998863  888999999999999999987777665 899999999999999999999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=4.6e-19  Score=128.36  Aligned_cols=170  Identities=16%  Similarity=0.177  Sum_probs=107.6

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC---CCCCCCCCCCE-EeeCCccccccCcccccCCCCCcEE
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNT-LHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      +++++|++++|.++.+| ..|.++++|+.|++++|++.+.   .+|.+++++.. +.+..|.+..+++..+..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            57899999999999988 5688999999999999987654   56778888765 4555688888888888888899999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCC-cCCCCC--CccCC-CcccEEeccCcccccccCCCCCCCCccEEEcC-CCC
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCP--TLYLS-SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVS-GNP  160 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~-~n~  160 (183)
                      ++++|.++.++...+....++..+++.++ .+..++  .+... ..++.|++++|.++.++...+...+++++++. +|.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            98888887666544334444555555442 444332  12222 23455555555555554444433444444443 233


Q ss_pred             ceeeCCCCcCCCcceeEEEE
Q psy13911        161 RLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       161 ~~~~~~~~~~~~~~l~~l~l  180 (183)
                      ++.+++.+|.++++|+.|++
T Consensus       190 l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEEC
T ss_pred             ccCCCHHHhccCcccchhhc
Confidence            44444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.9e-18  Score=131.80  Aligned_cols=150  Identities=30%  Similarity=0.379  Sum_probs=84.9

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI   92 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   92 (183)
                      |+.|++++|.+..+|   ..+++|+.|++++|.++.++.+..  +|+.|++++|.++.++.    .+++|+.|++++|.+
T Consensus        82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQL  152 (571)
T ss_dssp             CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCcc
Confidence            344444444444333   223444444444444444422222  55555555555555433    345566666666666


Q ss_pred             ccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCc-------cEEEcCCCCceeeC
Q psy13911         93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQL-------QYLDVSGNPRLHVD  165 (183)
Q Consensus        93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l-------~~l~l~~n~~~~~~  165 (183)
                      +.+|.    .+++|+.|++++|.++++|.+.  ++|+.|++++|.++.++.  +. .+|       +.|++++|.++.+ 
T Consensus       153 ~~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~--~~-~~L~~~~~~L~~L~Ls~N~l~~l-  222 (571)
T 3cvr_A          153 TMLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA--VP-VRNHHSEETEIFFRCRENRITHI-  222 (571)
T ss_dssp             SCCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCCCC-
T ss_pred             CcCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh--HH-HhhhcccccceEEecCCCcceec-
Confidence            65554    3456777777777777666533  677777777777776655  22 366       8888888888876 


Q ss_pred             CCCcCCCcceeEEEEE
Q psy13911        166 PNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       166 ~~~~~~~~~l~~l~l~  181 (183)
                      |..+..+++|+.|+|+
T Consensus       223 p~~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          223 PENILSLDPTCTIILE  238 (571)
T ss_dssp             CGGGGGSCTTEEEECC
T ss_pred             CHHHhcCCCCCEEEee
Confidence            4445558888888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=2.3e-20  Score=133.49  Aligned_cols=171  Identities=19%  Similarity=0.222  Sum_probs=132.4

Q ss_pred             hhcCCCCcEEEccCCcCCCcccc-----------------ccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSL-----------------NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA   67 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~   67 (183)
                      +..+++|++|++++|.+.+++..                 ...+++|+.|++++|+++..  ..+..+++|+.|++++|.
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            44555666666666555433210                 12356789999999998887  467789999999999999


Q ss_pred             ccccCcccc-cCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCC
Q psy13911         68 ITSLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNT  145 (183)
Q Consensus        68 ~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~  145 (183)
                      +...++..+ ..+++|+++++++|.++.++...  .+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++...
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence            998766555 46899999999999999886654  4899999999999999875 4788899999999999999887554


Q ss_pred             CCCCCccEEEcCCCCce-eeCCCCcCCCcceeEEE
Q psy13911        146 LIPKQLQYLDVSGNPRL-HVDPNHFKSYRSYVRVY  179 (183)
Q Consensus       146 ~~~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~  179 (183)
                      ...++++.|++++|++. +..+..+..++.|+.++
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            34489999999999998 44456667776666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=2.2e-20  Score=133.22  Aligned_cols=168  Identities=20%  Similarity=0.161  Sum_probs=92.5

Q ss_pred             CCCCcEEEccCCcCCC-ccccc--cccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911         10 SSKLKVLNISKNCLKM-LPSLN--NENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      ++.|++|++++|.+.+ .|..+  ..+++|+.|++++|.+...      ..+..+++|++|++++|.+...++..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3456677776666654 33333  5566666666666665542      1122455566666666665555555555555


Q ss_pred             CCcEEEecCCcC----------------------------ccCCCC---CCCCCCCccEEEeeCCcCCCC-C-CccCC--
Q psy13911         81 EMEELVLSGNGI----------------------------SSLPNT---IPQSWPHLRVLRLHSNHLTSC-P-TLYLS--  125 (183)
Q Consensus        81 ~L~~l~l~~~~l----------------------------~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~--  125 (183)
                      +|++|++++|.+                            +.++..   .+..+++|++|++++|.+++. | .+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            566666655543                            222111   111335556666666666554 2 23333  


Q ss_pred             -CcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        126 -SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       126 -~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                       ++|++|++++|.++.++....  ++|++|++++|.+++++ . +..+++|+.|+++
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~-~~~l~~L~~L~L~  302 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-Q-PDELPEVDNLTLD  302 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-C-TTSCCCCSCEECS
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-h-hhhCCCccEEECc
Confidence             466777777776666543332  56777777777776652 2 5566667666653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.2e-18  Score=125.27  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=88.9

Q ss_pred             CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc-EEeccCcccccccCCCCCC-CCccEE
Q psy13911         79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR-VLDLSYNHLERLNLNTLIP-KQLQYL  154 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~-~l~l~~n~l~~~~~~~~~~-~~l~~l  154 (183)
                      +++|+.+++.+|.++.++..+|+.+.+|+.+++.+| ++.++  .|.++.+|+ .+++.. .++.++..++.. ++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678899999999999999999989999999999987 77665  588999999 999987 788888888876 899999


Q ss_pred             EcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        155 DVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       155 ~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      ++.+|.++.+.+.+|.+|++|+.+|.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=7.5e-19  Score=140.14  Aligned_cols=173  Identities=19%  Similarity=0.145  Sum_probs=141.4

Q ss_pred             cCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCC-C--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911          9 NSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTD-I--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      ..++++.|++++|.+..+ +..+..+++|+.|++++|.... +  .+|.++++|++|++++|.+....+..+..+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            457899999999999986 4788999999999999996433 3  56899999999999999999988888999999999


Q ss_pred             EEecCCcCcc-CC-CCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCC---CCccEEEc
Q psy13911         85 LVLSGNGISS-LP-NTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIP---KQLQYLDV  156 (183)
Q Consensus        85 l~l~~~~l~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~---~~l~~l~l  156 (183)
                      |++++|.+.. .+ ...+..+++|++|++++|.+++.+   .++.+++|++|++++|.+++.....+..   ++++.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            9999999885 33 334568999999999999998753   3788999999999999998876555443   67888888


Q ss_pred             CCCCceeeCCCCcCCCcc------eeEEEEE
Q psy13911        157 SGNPRLHVDPNHFKSYRS------YVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~~~~~~~~~~------l~~l~l~  181 (183)
                      ++|.+.+..+..+..++.      |+.|+++
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             CCCccccccccchhhcCCccccCceeEEecC
Confidence            888888776666666655      7777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1.7e-18  Score=132.48  Aligned_cols=157  Identities=18%  Similarity=0.193  Sum_probs=129.9

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      .|...+.++++++.++.+|..+.  ++++.|++++|.+...  ..+.++++|++|++++|.++.+.+..+..+++|++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            45556899999999999996553  8999999999999988  5789999999999999999999888899999999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCCCCc--cEEEcCCCCc
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQL--QYLDVSGNPR  161 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l--~~l~l~~n~~  161 (183)
                      +++|.++.+|..   .+++|++|++++|.+++++   .++.+++|++|++++|.+++.....+  +++  ++|++++|.+
T Consensus       107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV--AHLHLSCILLDLVSY  181 (562)
T ss_dssp             CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG--TTSCEEEEEEEESSC
T ss_pred             CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhh--hhceeeEEEeecccc
Confidence            999999998876   6899999999999998864   48888999999999999887432222  555  9999999988


Q ss_pred             --eeeCCCCcCCC
Q psy13911        162 --LHVDPNHFKSY  172 (183)
Q Consensus       162 --~~~~~~~~~~~  172 (183)
                        ++..+..+..+
T Consensus       182 ~~~~~~~~~l~~l  194 (562)
T 3a79_B          182 HIKGGETESLQIP  194 (562)
T ss_dssp             CCCSSSCCEEEEC
T ss_pred             cccccCccccccc
Confidence              66666655543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=129.26  Aligned_cols=171  Identities=13%  Similarity=0.016  Sum_probs=122.3

Q ss_pred             CCCcEEEccCCcCCC--ccc--cccccccccEEEccCCCCCCC--CCC--CCCCCCCEEeeCCccccccCc----ccccC
Q psy13911         11 SKLKVLNISKNCLKM--LPS--LNNENRYLEKLYLTSNALTDI--GPL--NKCRQLNTLHVAYNAITSLPD----NCISA   78 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~--~~~--~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~   78 (183)
                      ..++.+.+.++.+..  +..  .+..+++|+.|++++|.+.+.  ..+  ..+++|++|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356788888877763  211  123456799999999998876  444  789999999999999886433    23456


Q ss_pred             CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC---CC---CccCCCcccEEeccCcccccccCC---CC-CC
Q psy13911         79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CP---TLYLSSSLRVLDLSYNHLERLNLN---TL-IP  148 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~---~~~~~~~L~~l~l~~n~l~~~~~~---~~-~~  148 (183)
                      +++|++|++++|.+..++...+..+++|++|++++|.+.+   ++   .++.+++|++|++++|.++.++..   .+ ..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            8899999999999998887777789999999999998754   21   235667777788877777654332   11 11


Q ss_pred             CCccEEEcCCCCceeeCCCCcCCC---cceeEEEEE
Q psy13911        149 KQLQYLDVSGNPRLHVDPNHFKSY---RSYVRVYIQ  181 (183)
Q Consensus       149 ~~l~~l~l~~n~~~~~~~~~~~~~---~~l~~l~l~  181 (183)
                      ++|++|++++|.+++..|..+..+   ++|+.|+++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls  259 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS  259 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence            667777777777777655555554   467666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=6.6e-20  Score=138.10  Aligned_cols=143  Identities=19%  Similarity=0.212  Sum_probs=113.6

Q ss_pred             ccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCccccc-CCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911         34 RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCIS-AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR  110 (183)
Q Consensus        34 ~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~  110 (183)
                      ++|+.|++++|.+++.  ..+..+++|+.|++++|.++..++..+. .+++|++|++++|.++.++...  .+++|+.|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc--cCCCCCEEE
Confidence            4455666666666655  3567789999999999999987666665 6899999999999999886654  589999999


Q ss_pred             eeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee-eCCCCcCCCcceeEE
Q psy13911        111 LHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH-VDPNHFKSYRSYVRV  178 (183)
Q Consensus       111 l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l  178 (183)
                      +++|.++++| .+..+++|+.|++++|.+++++......++++.|++++|++.+ ..+..+..++.++.+
T Consensus       198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            9999999875 5788899999999999999987654444899999999999983 335556666655544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=1e-18  Score=116.83  Aligned_cols=146  Identities=16%  Similarity=0.198  Sum_probs=123.2

Q ss_pred             cccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911         31 NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR  110 (183)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~  110 (183)
                      ..+++|+.|++++|.+..++.+..+++|+.|++++|.+...+  .+..+++|+++++++|.++......+..+++|+.|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            567899999999999998777889999999999999877654  488899999999999999863333344899999999


Q ss_pred             eeCCcCCCC--CCccCCCcccEEeccCcc-cccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        111 LHSNHLTSC--PTLYLSSSLRVLDLSYNH-LERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       111 l~~~~~~~~--~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      +++|.+++.  +.+..+++|++|++++|. +++++ .....++|++|++++|.++++.  .+.++++|+.|+++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEEC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEee
Confidence            999999873  357888999999999997 88875 2222389999999999999864  78899999999885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.7e-18  Score=131.38  Aligned_cols=151  Identities=22%  Similarity=0.215  Sum_probs=107.9

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      +.++++++.++.+|..+.  ++++.|++++|.++..  ..+.++++|++|++++|.++.+.+..+..+++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            567888888888776544  7788888888887776  457778888888888888887766667788888888888888


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCCCCCc--cEEEcCCCCc--eee
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQL--QYLDVSGNPR--LHV  164 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l--~~l~l~~n~~--~~~  164 (183)
                      ++.+|..   .+++|++|++++|.++++  | .++.+++|++|++++|.+++.....+  +++  ++|++++|.+  .+.
T Consensus        81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTTTSSC
T ss_pred             eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcccc--ccceeeEEEeeccccccccc
Confidence            8777665   567788888888877763  3 47777788888888887766322111  455  7777777766  444


Q ss_pred             CCCCcCC
Q psy13911        165 DPNHFKS  171 (183)
Q Consensus       165 ~~~~~~~  171 (183)
                      .|..+..
T Consensus       156 ~~~~l~~  162 (520)
T 2z7x_B          156 DPEGLQD  162 (520)
T ss_dssp             CTTTTTT
T ss_pred             ccccccc
Confidence            4444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.2e-17  Score=127.43  Aligned_cols=151  Identities=26%  Similarity=0.312  Sum_probs=127.8

Q ss_pred             CCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      +.+++.|++++|.+.++|..+  +++|+.|++++|.++.++  ..+++|+.|++++|.++.++.  +..  +|++|++++
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             cCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            348999999999999998755  378999999999999776  568999999999999998766  444  999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCc
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF  169 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  169 (183)
                      |.++.+|.    .+++|+.|++++|.++++|.  .+++|+.|++++|.+++++.  +. ++|+.|++++|.++.++.  +
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~--~  198 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA--V  198 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC--C
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh--H
Confidence            99999887    47899999999999999887  56899999999999999876  43 899999999999997754  5


Q ss_pred             CCCcce-------eEEEEE
Q psy13911        170 KSYRSY-------VRVYIQ  181 (183)
Q Consensus       170 ~~~~~l-------~~l~l~  181 (183)
                      ..  +|       +.|+++
T Consensus       199 ~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             C----------CCEEEECC
T ss_pred             HH--hhhcccccceEEecC
Confidence            44  66       777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=2.5e-18  Score=112.08  Aligned_cols=134  Identities=21%  Similarity=0.189  Sum_probs=100.0

Q ss_pred             cCCCCcEEEccCCcCC--CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          9 NSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ..+.++.|++++|.+.  .+|..+..+++|+.|++++|.++....+..+++|+.|++++|.+....+..+..+++|++++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            4477888888888887  67777788888888888888887776777788888888888888775555566677888888


Q ss_pred             ecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCccccccc
Q psy13911         87 LSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLERLN  142 (183)
Q Consensus        87 l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~  142 (183)
                      +++|.++.++. ..+..+++|+.|++++|.+++.+.     +..+++|+++++++|.+.+++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            88887777652 223367777888888877777653     566677777777777666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=2.7e-17  Score=122.90  Aligned_cols=155  Identities=24%  Similarity=0.298  Sum_probs=97.6

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      ++|+.|++++|.+.++|..   +++|+.|++++|++..++.+  .++|++|++++|.++.++  .+..+++|+++++++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCC
Confidence            3556666666665555532   24566666666655554322  156777777777777655  2677777777777777


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcC
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFK  170 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  170 (183)
                      .++.+|..    ..+|++|++++|.++++|.++.+++|+.+++++|.+++++..   ++++++|++++|.++.++  .+.
T Consensus       164 ~l~~lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp--~~~  234 (454)
T 1jl5_A          164 SLKKLPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELP--ELQ  234 (454)
T ss_dssp             CCSCCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCC--CCT
T ss_pred             cCcccCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccc--ccC
Confidence            77766543    246777777777777776677777777777777777664321   146667777777666442  366


Q ss_pred             CCcceeEEEEE
Q psy13911        171 SYRSYVRVYIQ  181 (183)
Q Consensus       171 ~~~~l~~l~l~  181 (183)
                      ++++|+.|+++
T Consensus       235 ~l~~L~~L~l~  245 (454)
T 1jl5_A          235 NLPFLTTIYAD  245 (454)
T ss_dssp             TCTTCCEEECC
T ss_pred             CCCCCCEEECC
Confidence            66666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=4.3e-18  Score=123.27  Aligned_cols=174  Identities=17%  Similarity=0.132  Sum_probs=133.7

Q ss_pred             HHhhcCCCCcEEEccCCcCCC-cc-ccccccccccE-EEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM-LP-SLNNENRYLEK-LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~-L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      .+|+.+++|++|++++|.+.+ ++ ..|.+++++.. +.+..|++..+  ..|..+++|+.+++++|.+..+++..+...
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence            468999999999999999865 66 56788888765 55567888887  568899999999999999988877666666


Q ss_pred             CCCcEEEecC-CcCccCCCCCCCCC-CCccEEEeeCCcCCCCCC-ccCCCcccEEecc-CcccccccCCCCCC-CCccEE
Q psy13911         80 SEMEELVLSG-NGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLS-YNHLERLNLNTLIP-KQLQYL  154 (183)
Q Consensus        80 ~~L~~l~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~-~n~l~~~~~~~~~~-~~l~~l  154 (183)
                      .++..+++.+ +.+..++...+... ..++.|++++|.++.++. .....+++.++++ +|.++.++..++.. ++|++|
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  207 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence            6777888765 57777777655444 357888888888887753 3344678888886 46788887777665 888888


Q ss_pred             EcCCCCceeeCCCCcCCCcceeEE
Q psy13911        155 DVSGNPRLHVDPNHFKSYRSYVRV  178 (183)
Q Consensus       155 ~l~~n~~~~~~~~~~~~~~~l~~l  178 (183)
                      ++++|.++.+++..+.++++|+.+
T Consensus       208 dLs~N~l~~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          208 DISRTRIHSLPSYGLENLKKLRAR  231 (350)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEECT
T ss_pred             hcCCCCcCccChhhhccchHhhhc
Confidence            888888888877777777666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=7.5e-17  Score=120.49  Aligned_cols=121  Identities=22%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      +|++|++++|.+.++| .+..+++|+.|++++|+++.++..  ..+|++|++++|.++.++  .+..+++|+++++++|.
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc
Confidence            4555555555555544 345555555555555555443221  134555555555554433  14445555555555555


Q ss_pred             CccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccc
Q psy13911         92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      ++.+|..    ..+|+.|++++|.++.+|.++.+++|+++++++|.++++
T Consensus       207 l~~l~~~----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          207 LKKLPDL----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CSSCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             CCcCCCC----cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence            4443321    134455555555444444444455555555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=4.8e-18  Score=113.15  Aligned_cols=125  Identities=24%  Similarity=0.318  Sum_probs=108.4

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCCC---CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG---PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      +.++++++.+..+|..+.  ..++.|++++|.++.+.   .+..+++|+.|++++|.++.+.+..+..+++|+++++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999999999986553  38999999999998882   3788999999999999999988888999999999999999


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCC-C-CccCCCcccEEeccCccccc
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSC-P-TLYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~l~l~~n~l~~  140 (183)
                      .++.++...+..+++|+.|++++|.+++. | .+..+++|+++++++|.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99988887676889999999999999876 3 47788899999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.74  E-value=3.6e-18  Score=112.19  Aligned_cols=134  Identities=21%  Similarity=0.302  Sum_probs=93.9

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +..++.|+.|++++|.+..++......++|+.|++++|.++.+..+..+++|+.|++++|.++.+++..+..+++|++++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            34567788888888887777554333447888888888777776677777788888888877777666556777777777


Q ss_pred             ecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCccccc
Q psy13911         87 LSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        87 l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~  140 (183)
                      +++|.++.++. ..+..+++|+.+++++|.++..|.     +..+++|+.++++.|...+
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            77777776664 122366777777777777776654     5666777777777765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=1.3e-16  Score=122.97  Aligned_cols=154  Identities=33%  Similarity=0.347  Sum_probs=98.7

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC----C--------------CCCCCCCEEeeCCccccccC
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP----L--------------NKCRQLNTLHVAYNAITSLP   72 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~--------------~~l~~L~~l~l~~~~~~~~~   72 (183)
                      ++|+.|++++|.+..+|..   +++|+.|++++|.++.++.    +              ..+++|+.|++++|.++.++
T Consensus       121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~  197 (622)
T 3g06_A          121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP  197 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred             CCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence            3444444444444444432   2556666666666555411    0              11244555555555555443


Q ss_pred             cccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCcc
Q psy13911         73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQ  152 (183)
Q Consensus        73 ~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~  152 (183)
                      .    ..++|+.+++.+|.++.++.    .+++|+.|++++|.++++|  ..+++|+.|++++|.++.++.   ..++|+
T Consensus       198 ~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~  264 (622)
T 3g06_A          198 T----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLL  264 (622)
T ss_dssp             C----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCC
T ss_pred             C----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCc
Confidence            3    12455566666665555543    2367888888888888877  455789999999999988765   348899


Q ss_pred             EEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        153 YLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       153 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .|++++|.++.+ |..+.++++|+.|+|+
T Consensus       265 ~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          265 SLSVYRNQLTRL-PESLIHLSSETTVNLE  292 (622)
T ss_dssp             EEECCSSCCCSC-CGGGGGSCTTCEEECC
T ss_pred             EEeCCCCCCCcC-CHHHhhccccCEEEec
Confidence            999999999966 6778899999998875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=106.29  Aligned_cols=124  Identities=28%  Similarity=0.411  Sum_probs=102.3

Q ss_pred             cEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911         14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI   92 (183)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   92 (183)
                      +.++++++.+..+|..+  .++++.|++++|.++.+ ..+..+++|+.|++++|.++.+++..|..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            57888888888888654  36788899999888877 6777888899999999888888887788888899999999988


Q ss_pred             ccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccc
Q psy13911         93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLE  139 (183)
Q Consensus        93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~  139 (183)
                      +.++...+..+++|+.|++++|.++.++.  +..+++|+.+++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88887766688888999998888888763  677788888888888654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=3.9e-16  Score=102.50  Aligned_cols=126  Identities=29%  Similarity=0.365  Sum_probs=99.1

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      .+.+++.++.+..+|..+  .++++.|++++|+++.+  ..+..+++|+.|++++|.++.+++..+..+++|+++++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            467888888888887543  36788888888888877  34677888888888888888877776778888888888888


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCccccc
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~  140 (183)
                      .++.++...+..+++|+.|++++|.+++++.  +..+++|+++++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            8888877766577888888888888887763  5667788888888887664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=2.1e-17  Score=105.62  Aligned_cols=125  Identities=26%  Similarity=0.283  Sum_probs=88.6

Q ss_pred             cCCCCcEEEccCCcCC--CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          9 NSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      ..++++.|++++|.+.  .+|..+..+++|+.|++++|.++....+..+++|+.|++++|.+....+..+..+++|++++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3467888888888887  57777777888888888888877776677778888888888877765555555677777777


Q ss_pred             ecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEecc
Q psy13911         87 LSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLS  134 (183)
Q Consensus        87 l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~  134 (183)
                      +++|.++.++  ..+ ..+++|+.|++++|.+++.+.     +..+++|+.++++
T Consensus        95 ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777776653  232 366777777777777766553     5556666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=7.5e-16  Score=101.15  Aligned_cols=130  Identities=25%  Similarity=0.298  Sum_probs=111.4

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911         35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN  114 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  114 (183)
                      ..+.++++++++..++. .-.++|+.|++++|.++.+++..+..+++|+++++++|.++.++...+..+++|+.|++++|
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            35678888888887732 23478999999999999988887889999999999999999998887768999999999999


Q ss_pred             cCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeC
Q psy13911        115 HLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVD  165 (183)
Q Consensus       115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~  165 (183)
                      .+++++.  +..+++|+++++++|.+++++...+.. +++++|++++|++.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            9998764  678899999999999999988776554 89999999999987643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=1.1e-15  Score=117.89  Aligned_cols=140  Identities=32%  Similarity=0.352  Sum_probs=73.8

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG   91 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   91 (183)
                      .++.++++++.++.+|..+.  ++|+.|++++|.++.++.  .+++|++|++++|.++.++.    .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc
Confidence            46666666666666664433  566666666666665533  34566666666666555443    34555555555555


Q ss_pred             CccCCCCCC----------------CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEE
Q psy13911         92 ISSLPNTIP----------------QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLD  155 (183)
Q Consensus        92 l~~~~~~~~----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~  155 (183)
                      ++.++....                ..+++|++|++++|.++++|.  ...+|+.|++++|.++.++   ...++|+.|+
T Consensus       113 l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~  187 (622)
T 3g06_A          113 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELS  187 (622)
T ss_dssp             CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred             CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence            555443100                012444455555554444432  1234555555555555543   1126677777


Q ss_pred             cCCCCceee
Q psy13911        156 VSGNPRLHV  164 (183)
Q Consensus       156 l~~n~~~~~  164 (183)
                      +++|.++++
T Consensus       188 Ls~N~l~~l  196 (622)
T 3g06_A          188 VSDNQLASL  196 (622)
T ss_dssp             CCSSCCSCC
T ss_pred             CCCCCCCCC
Confidence            777776664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=3e-18  Score=124.61  Aligned_cols=176  Identities=22%  Similarity=0.214  Sum_probs=99.0

Q ss_pred             HHhhcCC-CCcEEEccCCcCCCcc-cccccc-----ccccEEEccCCCCCCC--C----CCCCC-CCCCEEeeCCccccc
Q psy13911          5 LFLQNSS-KLKVLNISKNCLKMLP-SLNNEN-----RYLEKLYLTSNALTDI--G----PLNKC-RQLNTLHVAYNAITS   70 (183)
Q Consensus         5 ~~~~~~~-~L~~l~l~~~~~~~~~-~~~~~~-----~~L~~L~l~~~~~~~~--~----~~~~l-~~L~~l~l~~~~~~~   70 (183)
                      ..+..++ +|++|++++|.+.... ..+..+     ++|+.|++++|.++..  .    .+..+ ++|+.|++++|.++.
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            4455555 5666666666555432 233332     5566666666665543  1    13333 566666666666665


Q ss_pred             cCcccc----cC-CCCCcEEEecCCcCccCC-----CCCCCCC-CCccEEEeeCCcCCCCC------CccCC-CcccEEe
Q psy13911         71 LPDNCI----SA-WSEMEELVLSGNGISSLP-----NTIPQSW-PHLRVLRLHSNHLTSCP------TLYLS-SSLRVLD  132 (183)
Q Consensus        71 ~~~~~~----~~-~~~L~~l~l~~~~l~~~~-----~~~~~~~-~~L~~L~l~~~~~~~~~------~~~~~-~~L~~l~  132 (183)
                      .....+    .. .++|++|++++|.++...     ..+. .. ++|++|++++|.+++..      .+..+ ++|+.|+
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~  202 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD  202 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEE
Confidence            444332    22 246677777766665211     1111 22 36777777777776543      12333 4788888


Q ss_pred             ccCcccccccCCCCC------CCCccEEEcCCCCceeeCC----CCcCCCcceeEEEEE
Q psy13911        133 LSYNHLERLNLNTLI------PKQLQYLDVSGNPRLHVDP----NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       133 l~~n~l~~~~~~~~~------~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~  181 (183)
                      +++|.+++.+...+.      .++|++|++++|.+++..+    ..+..+++|+.|+++
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            888887774322111      1478888888888876544    345667777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5.8e-16  Score=103.02  Aligned_cols=127  Identities=16%  Similarity=0.195  Sum_probs=108.4

Q ss_pred             ccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcc-cccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         36 LEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDN-CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        36 L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      -+.+++++++++.++. +  ..+++.|++++|.+..+++. .+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3788999999988733 3  23899999999999988764 488899999999999999988776666899999999999


Q ss_pred             CcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911        114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus       114 ~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      |.+++++  .+..+++|++|++++|.++++.+..+.. +++++|++++|++.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999875  3788899999999999999987766655 8999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1e-15  Score=101.89  Aligned_cols=126  Identities=25%  Similarity=0.245  Sum_probs=109.5

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcC
Q psy13911         37 EKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL  116 (183)
Q Consensus        37 ~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  116 (183)
                      +.++++++.++.++.- -.++++.|++++|.++.++ ..+..+++|+.|++++|.++.++...+..+++|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            5788999998887321 2368999999999999877 4589999999999999999999988777899999999999999


Q ss_pred             CCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911        117 TSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus       117 ~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      ++++  .+..+++|+.|++++|.++.++...+.. ++++.|++++|++.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            9876  4888999999999999999998876665 8999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.9e-19  Score=134.89  Aligned_cols=121  Identities=22%  Similarity=0.281  Sum_probs=102.8

Q ss_pred             CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCc
Q psy13911         57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYN  136 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n  136 (183)
                      .|+.|++++|.++.++.  +..+++|+.|++++|.++.+|..+. .+++|+.|++++|.++++|.++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence            58899999999998764  8899999999999999999987665 89999999999999999998899999999999999


Q ss_pred             cccccc-CCCCCC-CCccEEEcCCCCceeeCCCC---cCCCcceeEEEE
Q psy13911        137 HLERLN-LNTLIP-KQLQYLDVSGNPRLHVDPNH---FKSYRSYVRVYI  180 (183)
Q Consensus       137 ~l~~~~-~~~~~~-~~l~~l~l~~n~~~~~~~~~---~~~~~~l~~l~l  180 (183)
                      .++++. +..+.. ++|+.|++++|++++.++..   +..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999985 444443 89999999999999876532   234778887753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=8.7e-19  Score=128.43  Aligned_cols=125  Identities=18%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             CCCCEEeeCCccccccC-c---ccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCC-----CC-
Q psy13911         56 RQLNTLHVAYNAITSLP-D---NCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTS-----CP-  120 (183)
Q Consensus        56 ~~L~~l~l~~~~~~~~~-~---~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~-  120 (183)
                      ++|++|++++|.+.... +   ..+..+++|++|++++|.++.     +....+..+++|+.|++++|.++.     ++ 
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555544111 1   123345556666666555541     111112245566666666666531     22 


Q ss_pred             CccCCCcccEEeccCcccccccCC----C---CCCCCccEEEcCCCCcee----eCCCCc-CCCcceeEEEE
Q psy13911        121 TLYLSSSLRVLDLSYNHLERLNLN----T---LIPKQLQYLDVSGNPRLH----VDPNHF-KSYRSYVRVYI  180 (183)
Q Consensus       121 ~~~~~~~L~~l~l~~n~l~~~~~~----~---~~~~~l~~l~l~~n~~~~----~~~~~~-~~~~~l~~l~l  180 (183)
                      .+..+++|+.|++++|.+++.+..    .   ...++|++|++++|.+++    ..+..+ .++++|+.|++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence            244555666666666666554111    1   112556666666666665    123333 44566666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=1.3e-18  Score=125.13  Aligned_cols=172  Identities=17%  Similarity=0.193  Sum_probs=102.5

Q ss_pred             cCCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc-ccccc-CcccccCCCCC
Q psy13911          9 NSSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN-AITSL-PDNCISAWSEM   82 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~L   82 (183)
                      .+++|++|++++|.+..  ++..+..+++|+.|++++|.+...  ..+..+++|++|++++| .++.. .+..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            35666666666666553  445556666677777766665543  34555667777777766 45431 22235556677


Q ss_pred             cEEEecCC-cCcc--CCCCCCCCCC-CccEEEeeCC--cCCC--CC-CccCCCcccEEeccCcc-cccccCCCCCC-CCc
Q psy13911         83 EELVLSGN-GISS--LPNTIPQSWP-HLRVLRLHSN--HLTS--CP-TLYLSSSLRVLDLSYNH-LERLNLNTLIP-KQL  151 (183)
Q Consensus        83 ~~l~l~~~-~l~~--~~~~~~~~~~-~L~~L~l~~~--~~~~--~~-~~~~~~~L~~l~l~~n~-l~~~~~~~~~~-~~l  151 (183)
                      +++++++| .++.  ++..+. .++ +|++|++++|  .++.  ++ .+..+++|+.|++++|. +++.....+.. ++|
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            77777776 6653  222222 456 7777777777  3332  22 24556778888888777 55543333333 778


Q ss_pred             cEEEcCCCC-ceeeCCCCcCCCcceeEEEEE
Q psy13911        152 QYLDVSGNP-RLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       152 ~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++|++++|. +.......+.++++|+.|+++
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            888888874 322222356778888887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.2e-16  Score=104.06  Aligned_cols=131  Identities=23%  Similarity=0.250  Sum_probs=97.6

Q ss_pred             cccccEEEccCCCCC--CC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEE
Q psy13911         33 NRYLEKLYLTSNALT--DI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL  109 (183)
Q Consensus        33 ~~~L~~L~l~~~~~~--~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L  109 (183)
                      .++++.|++++|.+.  .+ ..+..+++|+.|++++|.++.+  ..+..+++|+++++++|.++...+..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467888888888887  44 4457788888888888888776  447778888888888888877444444357888888


Q ss_pred             EeeCCcCCCCC---CccCCCcccEEeccCcccccccC---CCCC-CCCccEEEcCCCCceeeC
Q psy13911        110 RLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNL---NTLI-PKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus       110 ~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~---~~~~-~~~l~~l~l~~n~~~~~~  165 (183)
                      ++++|.+++++   .+..+++|+.|++++|.+++++.   ..+. .++|++|++.+|.+..++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            88888888764   46777888888888888887765   2232 378888888888777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=2.1e-18  Score=125.39  Aligned_cols=179  Identities=21%  Similarity=0.147  Sum_probs=134.3

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCcc-----ccccccc-cccEEEccCCCCCCC--CCCCC-----CCCCCEEeeCCcccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLP-----SLNNENR-YLEKLYLTSNALTDI--GPLNK-----CRQLNTLHVAYNAIT   69 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~--~~~~~-----l~~L~~l~l~~~~~~   69 (183)
                      ++.++...++|++|++++|.+...+     ..+..++ +|+.|++++|.++..  ..+..     .++|++|++++|.++
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            5666777777999999999998765     5567777 899999999998876  23333     289999999999998


Q ss_pred             ccCccc----ccCC-CCCcEEEecCCcCccCCCCC----CCC-CCCccEEEeeCCcCCCCC------CccCCC-cccEEe
Q psy13911         70 SLPDNC----ISAW-SEMEELVLSGNGISSLPNTI----PQS-WPHLRVLRLHSNHLTSCP------TLYLSS-SLRVLD  132 (183)
Q Consensus        70 ~~~~~~----~~~~-~~L~~l~l~~~~l~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~------~~~~~~-~L~~l~  132 (183)
                      ...+..    +..+ ++|++|++++|.++..+...    +.. .++|++|++++|.+++..      .+...+ +|++|+
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence            766553    3344 89999999999998665422    112 468999999999988542      133444 899999


Q ss_pred             ccCcccccccCCCCCC------CCccEEEcCCCCceeeCC----CCcCC-CcceeEEEEE
Q psy13911        133 LSYNHLERLNLNTLIP------KQLQYLDVSGNPRLHVDP----NHFKS-YRSYVRVYIQ  181 (183)
Q Consensus       133 l~~n~l~~~~~~~~~~------~~l~~l~l~~n~~~~~~~----~~~~~-~~~l~~l~l~  181 (183)
                      +++|.+++.+...+..      ++|++|++++|.+.+...    ..+.. .++|+.|+++
T Consensus       174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred             ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence            9999998876533221      589999999999987432    33333 4588888875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=2.1e-18  Score=124.11  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=84.5

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.++.+++.++.+.+.+..+..+++|+.|++++|.+...   ..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            555666666665555443344555666666666554432   23445556666666665555433334555556666666


Q ss_pred             cCC-cCcc--CCCCCCCCCCCccEEEeeCC-cCCC--CC-CccCCC-cccEEeccCc--cccc--ccCCCCCCCCccEEE
Q psy13911         88 SGN-GISS--LPNTIPQSWPHLRVLRLHSN-HLTS--CP-TLYLSS-SLRVLDLSYN--HLER--LNLNTLIPKQLQYLD  155 (183)
Q Consensus        88 ~~~-~l~~--~~~~~~~~~~~L~~L~l~~~-~~~~--~~-~~~~~~-~L~~l~l~~n--~l~~--~~~~~~~~~~l~~l~  155 (183)
                      ++| .++.  ++..+ ..+++|++|++++| .+++  ++ .+..++ +|++|++++|  .+++  ++......++|++|+
T Consensus       150 ~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          150 SGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             TTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            655 3441  22212 14555666666665 5543  12 234445 5666666655  2321  111111115566666


Q ss_pred             cCCCC-ceeeCCCCcCCCcceeEEEE
Q psy13911        156 VSGNP-RLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       156 l~~n~-~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +++|. +++..+..+..+++|+.|++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            66665 44444445555566665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1e-16  Score=105.28  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             cccccccccEEEccCCCCCCCCCCCCCC-CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc
Q psy13911         29 LNNENRYLEKLYLTSNALTDIGPLNKCR-QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR  107 (183)
Q Consensus        29 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~  107 (183)
                      .+..+.+++.|++++|+++.++.+..+. +|+.|++++|.++.+  ..+..+++|+++++++|.++.++...+..+++|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3456788999999999988876566555 899999999998887  3488889999999999999988876645788999


Q ss_pred             EEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCC----CCCCCCccEEEcCCCCcee
Q psy13911        108 VLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLN----TLIPKQLQYLDVSGNPRLH  163 (183)
Q Consensus       108 ~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~l~~l~l~~n~~~~  163 (183)
                      .|++++|.++.+|   .+..+++|+.+++++|.++.++..    ....++++.|++++|....
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999888766   367788899999999988876543    2223888999998887643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=4.3e-18  Score=124.78  Aligned_cols=150  Identities=19%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             ccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccCccccc----CC---------CCCcEEEecCCcC
Q psy13911         32 ENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLPDNCIS----AW---------SEMEELVLSGNGI   92 (183)
Q Consensus        32 ~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~~~----~~---------~~L~~l~l~~~~l   92 (183)
                      .+++|+.|++++|.+...      ..+..+++|+.|++++|.+....+..+.    .+         ++|++|++++|.+
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            445555555555555442      2334455555555555555422221111    11         4555666655555


Q ss_pred             c--cCCC--CCCCCCCCccEEEeeCCcCCC------CC-CccCCCcccEEeccCccccc-----ccCCCCCCCCccEEEc
Q psy13911         93 S--SLPN--TIPQSWPHLRVLRLHSNHLTS------CP-TLYLSSSLRVLDLSYNHLER-----LNLNTLIPKQLQYLDV  156 (183)
Q Consensus        93 ~--~~~~--~~~~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~l~~l~l  156 (183)
                      +  .++.  ..+..+++|+.|++++|.++.      .+ .+..+++|+.|++++|.+++     ++......++|++|++
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            4  1211  111134566666666666652      22 45556667777777666632     2211111266777777


Q ss_pred             CCCCceeeC----CCCc--CCCcceeEEEEE
Q psy13911        157 SGNPRLHVD----PNHF--KSYRSYVRVYIQ  181 (183)
Q Consensus       157 ~~n~~~~~~----~~~~--~~~~~l~~l~l~  181 (183)
                      ++|.+++..    +..+  ..+++|+.|+|+
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence            777665541    2333  226666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=7.4e-15  Score=108.01  Aligned_cols=169  Identities=17%  Similarity=0.236  Sum_probs=106.1

Q ss_pred             HHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      .+|..|++|+.+++.++.+..++.....+.+|+.+.+..+ +..+  .+|.++++|+.+.+..+ ++.+...+|.. ++|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            3567778888888877777777633223567777777643 5544  56777777877777653 55555555555 566


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCC-----CCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEE
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-----SCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYL  154 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l  154 (183)
                      +.+.+ .+.++.++..+|..+.+|+.+.+.++.+.     .++  .|.+|++|+.+.+. +.++.++..++.. .+|+.+
T Consensus       251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred             cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence            66666 34455666666666777777777666543     222  36666666666665 3466666666655 666666


Q ss_pred             EcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        155 DVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       155 ~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      .+..+ ++.+...+|.+| +|+.+++
T Consensus       329 ~lp~~-l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          329 TIPAN-VTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             EECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred             EECcc-ccEEcHHhCCCC-CCCEEEE
Confidence            66443 556666666666 6666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=3.8e-17  Score=128.33  Aligned_cols=112  Identities=26%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             ccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCc
Q psy13911         28 SLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHL  106 (183)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L  106 (183)
                      ..+..++.|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+|..+. .+++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLPAELG-SCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGG-GGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccChhhc-CCCCC
Confidence            4455556666666666666555 334455666666666666664443 25556666666666666665555443 55666


Q ss_pred             cEEEeeCCcCCCCC-CccCCCcccEEeccCcccccc
Q psy13911        107 RVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus       107 ~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      +.|++++|.++.+| .++.+++|+.|++++|.+++.
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            66666666666555 355556666666666655543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=2.3e-16  Score=100.78  Aligned_cols=123  Identities=19%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             CCCCEEeeCCcccc-ccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CCC-ccCCCcccEEe
Q psy13911         56 RQLNTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CPT-LYLSSSLRVLD  132 (183)
Q Consensus        56 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~l~  132 (183)
                      ++++.|++++|.++ ...+..+..+++|+.+++++|.++.+ .. +..+++|+.|++++|.+++ +|. +..+++|+.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555555 12222345566666666666666655 22 2356667777777776666 443 34466777777


Q ss_pred             ccCcccccccC-CCCC-CCCccEEEcCCCCceeeCC---CCcCCCcceeEEEE
Q psy13911        133 LSYNHLERLNL-NTLI-PKQLQYLDVSGNPRLHVDP---NHFKSYRSYVRVYI  180 (183)
Q Consensus       133 l~~n~l~~~~~-~~~~-~~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l  180 (183)
                      +++|.+++++. ..+. .++|++|++++|++++.++   ..+..+++|+.|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            77777766531 2222 2677777777777776654   46677777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.4e-16  Score=125.06  Aligned_cols=115  Identities=20%  Similarity=0.292  Sum_probs=99.6

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ++..+..++.|+.|++++|.+..++..+..+++|+.|++++|.++.+ ..+.++++|+.|++++|.++.++.. +..+++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~  294 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQ  294 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS-GGGGTT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh-hcCCCC
Confidence            35668889999999999999999997777999999999999999977 5688999999999999999977554 889999


Q ss_pred             CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      |++|++++|.++.+|..+. .+++|+.|++++|.+++.
T Consensus       295 L~~L~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTT-SCTTCCCEECTTSCCCSH
T ss_pred             CCEEECCCCCCCccChhhh-cCCCccEEeCCCCccCCC
Confidence            9999999999999988854 899999999999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=2e-14  Score=93.72  Aligned_cols=106  Identities=23%  Similarity=0.340  Sum_probs=87.9

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      ..+.++++++.+..+|..+  .++++.|++++|+++.+  ..|..+++|+.|++++|.++.+++..+..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3578899999999888655  37888999999998888  4578888999999999998888887778888899999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      |.++.++...+..+++|+.|++++|.++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            988888887666788889999988877643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.4e-14  Score=103.96  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=89.9

Q ss_pred             CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc-EEEeeCCcCCCCC--CccCCCcccEE
Q psy13911         55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR-VLRLHSNHLTSCP--TLYLSSSLRVL  131 (183)
Q Consensus        55 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~--~~~~~~~L~~l  131 (183)
                      +++|+.+++++|.++.++..+|..+.+|+.+++..+ ++.++..+|+.+.+|+ .+.+.+ .++.++  .|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999999999999999999999999998 8899999998999999 999988 677664  69999999999


Q ss_pred             eccCcccccccCCCCCC-CCccEEEc
Q psy13911        132 DLSYNHLERLNLNTLIP-KQLQYLDV  156 (183)
Q Consensus       132 ~l~~n~l~~~~~~~~~~-~~l~~l~l  156 (183)
                      +++.|.++.++..++.. ++|+.+..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999888876 68887753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=3.4e-14  Score=92.98  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=85.9

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      -+.++++++.+..+|..+.  ++|+.|++++|+++.+  ..+..+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3678888888888886553  7888899999888887  45778888888888888888888777778888888888888


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      .++.++...+..+++|+.|++++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            88888877666788888888888877754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.58  E-value=5.9e-17  Score=121.10  Aligned_cols=135  Identities=21%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             HhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------CCCCCC-CCCCEEeeCCcccccc--
Q psy13911          6 FLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------GPLNKC-RQLNTLHVAYNAITSL--   71 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l-~~L~~l~l~~~~~~~~--   71 (183)
                      .+..+++|+.|++++|.+..     ++..+..+++|++|++++|.+...      ..+... ++|++|++++|.+...  
T Consensus        23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            35556666666666666552     334445556666666666655442      111111 1466666666655531  


Q ss_pred             --CcccccCCCCCcEEEecCCcCccC-----CCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCccc
Q psy13911         72 --PDNCISAWSEMEELVLSGNGISSL-----PNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHL  138 (183)
Q Consensus        72 --~~~~~~~~~~L~~l~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l  138 (183)
                        .+..+..+++|+++++++|.++..     ........++|++|++++|.++...      .+..+++|++|++++|.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence              133355555666666666655411     1111112334555555555544321      123334455555554444


Q ss_pred             cc
Q psy13911        139 ER  140 (183)
Q Consensus       139 ~~  140 (183)
                      ++
T Consensus       183 ~~  184 (461)
T 1z7x_W          183 NE  184 (461)
T ss_dssp             HH
T ss_pred             ch
Confidence            33

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.56  E-value=5.6e-17  Score=121.23  Aligned_cols=127  Identities=22%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             CCCCCEEeeCCcccccc----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC-----
Q psy13911         55 CRQLNTLHVAYNAITSL----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP-----  120 (183)
Q Consensus        55 l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~-----  120 (183)
                      +++|+.|++++|.++..    .+..+..+++|+++++++|.++.     +........++|+.|++++|.++...     
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            44555555555544431    11223345555555555555541     11111112245666666666655421     


Q ss_pred             -CccCCCcccEEeccCcccccccCCCCC------CCCccEEEcCCCCcee----eCCCCcCCCcceeEEEEE
Q psy13911        121 -TLYLSSSLRVLDLSYNHLERLNLNTLI------PKQLQYLDVSGNPRLH----VDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       121 -~~~~~~~L~~l~l~~n~l~~~~~~~~~------~~~l~~l~l~~n~~~~----~~~~~~~~~~~l~~l~l~  181 (183)
                       .+..+++|++|++++|.+++.+...+.      .+++++|++++|.+++    ..+..+..+++|+.|+++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence             134456777777777777665433221      2577777777777764    335556667777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=2.4e-13  Score=99.96  Aligned_cols=145  Identities=10%  Similarity=0.157  Sum_probs=85.1

Q ss_pred             ccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc
Q psy13911         30 NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR  107 (183)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~  107 (183)
                      |.++.+|+.++++.+.++.+  .+|. +.+|+.+.+.. .+..+...+|..+.+|+.+++..+ ++.++..+|.. .+|+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred             hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence            44444444444444444433  2232 34444444442 244444455555555555555442 44555555533 5566


Q ss_pred             EEEeeCCcCCCCC--CccCCCcccEEeccCcccc-----cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEE
Q psy13911        108 VLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE-----RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVY  179 (183)
Q Consensus       108 ~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~  179 (183)
                      .+.+.+ .++.++  .|..|++|+.+.+.+|.+.     .++..++.. .+|+.+.+. +.++.+...+|.+|++|+.++
T Consensus       252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred             EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence            666633 344443  4778888888888776554     566666665 788888888 448888888898888888887


Q ss_pred             E
Q psy13911        180 I  180 (183)
Q Consensus       180 l  180 (183)
                      |
T Consensus       330 l  330 (401)
T 4fdw_A          330 I  330 (401)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=2e-18  Score=115.45  Aligned_cols=131  Identities=24%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             hcCCCCcEEEccCCcCCC-------ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911          8 QNSSKLKVLNISKNCLKM-------LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWS   80 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~   80 (183)
                      .....++.+++..+.+..       +|..+..+++|+.|++++|.++.++.+..+++|+.|++++|.+..++. .+..++
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~   93 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVAD   93 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence            344444444444444432       333566667777777777666665555556666666666666665443 244456


Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccc
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      +|+++++++|.++.++ .+ ..+++|+.|++++|.+++++   .+..+++|+++++++|.+++.
T Consensus        94 ~L~~L~L~~N~l~~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           94 TLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HCSEEEEEEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCEEECcCCcCCcCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            6666666666666554 22 24566666666666666543   245556666666666665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=4.7e-14  Score=107.99  Aligned_cols=151  Identities=23%  Similarity=0.196  Sum_probs=114.6

Q ss_pred             HHHHhhcCCCCcEEE-ccCCcCCCccc------cccc--cccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCc
Q psy13911          3 LELFLQNSSKLKVLN-ISKNCLKMLPS------LNNE--NRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPD   73 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~-l~~~~~~~~~~------~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~   73 (183)
                      ++..++.+++|+.|+ +..+.+..++.      .+..  ...|+.|++++|.++.++.+..+++|+.|++++|.++.+|.
T Consensus       401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG
T ss_pred             CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccch
Confidence            355667777777777 45444333221      1111  23588999999999888668889999999999999997765


Q ss_pred             ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCC---
Q psy13911         74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLI---  147 (183)
Q Consensus        74 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~---  147 (183)
                       .+..+++|+.|++++|.++.+| .+ ..+++|+.|++++|.++++  | .++.+++|+.|++++|.+++.++....   
T Consensus       481 -~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~  557 (567)
T 1dce_A          481 -ALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE  557 (567)
T ss_dssp             -GGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred             -hhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence             5889999999999999999887 44 3889999999999999987  5 488889999999999999887654322   


Q ss_pred             -CCCccEEEc
Q psy13911        148 -PKQLQYLDV  156 (183)
Q Consensus       148 -~~~l~~l~l  156 (183)
                       .++|+.|++
T Consensus       558 ~lp~L~~L~l  567 (567)
T 1dce_A          558 MLPSVSSILT  567 (567)
T ss_dssp             HCTTCSEEEC
T ss_pred             HCcccCccCC
Confidence             167777753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=2.7e-13  Score=88.36  Aligned_cols=105  Identities=21%  Similarity=0.216  Sum_probs=87.7

Q ss_pred             cccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911         35 YLEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS  113 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~  113 (183)
                      ..+.++++++.++.++ .+  .++++.|++++|.++.+++..+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4578899998888873 33  37889999999999988888788899999999999999988888777889999999999


Q ss_pred             CcCCCCCC--ccCCCcccEEeccCcccccc
Q psy13911        114 NHLTSCPT--LYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus       114 ~~~~~~~~--~~~~~~L~~l~l~~n~l~~~  141 (183)
                      |.+++++.  +..+++|+.|++++|.++-.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99988763  77888999999999877543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=4.1e-13  Score=87.86  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             ccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911         36 LEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN  114 (183)
Q Consensus        36 L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  114 (183)
                      -+.++++++++..++ .+  .++|+.|++++|.++.+++..+..+++|+.|++++|.++.++...+..+++|+.|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            367888988888773 33  378999999999999888877888999999999999999998887668899999999999


Q ss_pred             cCCCCCC--ccCCCcccEEeccCcccccc
Q psy13911        115 HLTSCPT--LYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus       115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~  141 (183)
                      .+++++.  +..+++|+.+++++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9988763  77888999999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=4.4e-17  Score=108.94  Aligned_cols=126  Identities=21%  Similarity=0.231  Sum_probs=97.1

Q ss_pred             CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccE
Q psy13911         51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV  130 (183)
Q Consensus        51 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  130 (183)
                      .+..+++|+.|++++|.+..++  .+..+++|+++++++|.++.+|.... .+++|+.|++++|.++++|.+..+++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~L~~N~l~~l~~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIASLSGIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHH-HHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhh-cCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence            4667888999999988888865  47788889999999998887765433 56788999999998888777777788999


Q ss_pred             EeccCcccccccC-CCCC-CCCccEEEcCCCCceeeCCC----------CcCCCcceeEEE
Q psy13911        131 LDLSYNHLERLNL-NTLI-PKQLQYLDVSGNPRLHVDPN----------HFKSYRSYVRVY  179 (183)
Q Consensus       131 l~l~~n~l~~~~~-~~~~-~~~l~~l~l~~n~~~~~~~~----------~~~~~~~l~~l~  179 (183)
                      |++++|.+++++. ..+. .++|++|++++|++.+..|.          .+..+++|+.|+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999998887654 2222 37889999999988776444          266777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=1.4e-12  Score=94.12  Aligned_cols=103  Identities=21%  Similarity=0.257  Sum_probs=92.1

Q ss_pred             cEEEccCC-cCCCccccccccccccEEEccC-CCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         14 KVLNISKN-CLKMLPSLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        14 ~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      ..++.+++ .+..+|. +..+++|+.|++++ |.++.+  ..|.++++|+.|++++|.++.+++..|..+++|+.|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45788888 8999999 89999999999996 999988  5689999999999999999999998899999999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCC
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTS  118 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  118 (183)
                      |.++.+|...+..+. |+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999988874444 9999999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=5.2e-12  Score=91.17  Aligned_cols=103  Identities=24%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             cEEEccCC-CCCCCCCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911         37 EKLYLTSN-ALTDIGPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN  114 (183)
Q Consensus        37 ~~L~l~~~-~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  114 (183)
                      ..++++++ +++.++.+..+++|+.|++++ |.++.+++..|..+++|+.|++++|.++.++...+..+++|+.|++++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            35678887 788884488888999999996 9999988888999999999999999999888877768899999999999


Q ss_pred             cCCCCCC--ccCCCcccEEeccCccccc
Q psy13911        115 HLTSCPT--LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus       115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~  140 (183)
                      .++++|.  +..+ .|+.|++.+|.+.-
T Consensus        91 ~l~~~~~~~~~~~-~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGL-SLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccC-CceEEEeeCCCccC
Confidence            9998763  4443 49999999987763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=1.1e-14  Score=106.06  Aligned_cols=159  Identities=18%  Similarity=0.153  Sum_probs=111.3

Q ss_pred             CCCCcEEEccCCcCCCcc-cc----cc-ccccccEEEccCCCCCCC--CCC-CCCCCCCEEeeCCccccccCcccc----
Q psy13911         10 SSKLKVLNISKNCLKMLP-SL----NN-ENRYLEKLYLTSNALTDI--GPL-NKCRQLNTLHVAYNAITSLPDNCI----   76 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~~~-~~----~~-~~~~L~~L~l~~~~~~~~--~~~-~~l~~L~~l~l~~~~~~~~~~~~~----   76 (183)
                      .+.++.+++++|.++... ..    +. ..++|+.|++++|.++..  ..+ ..+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467889999999887532 22    22 236899999999988764  222 235678999999998875433333    


Q ss_pred             -cCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCcccccccCC
Q psy13911         77 -SAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHLERLNLN  144 (183)
Q Consensus        77 -~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~  144 (183)
                       ...++|++|++++|.++.     +...+. ..++|++|++++|.+++..      .+..+++|+.|++++|.+++.+..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             346789999999998863     222222 5678999999999887531      355667899999999998876543


Q ss_pred             CCCC-----CCccEEEcCCCCceeeCCCCc
Q psy13911        145 TLIP-----KQLQYLDVSGNPRLHVDPNHF  169 (183)
Q Consensus       145 ~~~~-----~~l~~l~l~~n~~~~~~~~~~  169 (183)
                      .+..     ++|++|++++|.+++.....+
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            3322     789999999999876544333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.29  E-value=4.3e-13  Score=103.14  Aligned_cols=135  Identities=21%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCc-----cccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKML-----PSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLP   72 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~   72 (183)
                      ......+++|++|++.+|.+.+.     +.....+++|+.|++++|.++..      ..+.++++|+.|++.+|.+..++
T Consensus       157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~  236 (592)
T 3ogk_B          157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV  236 (592)
T ss_dssp             HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH
T ss_pred             HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH
Confidence            34455778888888888766532     23445677888888888777633      22346778888888887776644


Q ss_pred             cccccCCCCCcEEEecCCcCc----cCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCccccc
Q psy13911         73 DNCISAWSEMEELVLSGNGIS----SLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        73 ~~~~~~~~~L~~l~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~  140 (183)
                       ..+..+++|+.++++.....    ...... ..+++|+.++++++....++. +..+++|++|++++|.+++
T Consensus       237 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          237 -GFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             -HHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             -HHHhhhhHHHhhcccccccccchHHHHHHh-hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence             33666677777777642111    111112 244555555555543333332 3344556666665555433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=5.4e-13  Score=102.57  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             HHHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC----------------------------C
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI----------------------------G   50 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----------------------------~   50 (183)
                      +..+..++.|+.|+++++.+..     ++..+..+++|+.|++++|.+.+.                            .
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  264 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM  264 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence            3445555666666666555542     223334455555555555543322                            2


Q ss_pred             CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911         51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS   93 (183)
Q Consensus        51 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   93 (183)
                      .+..+++|+.+.+.++....++ ..+..+++|++|++.+|.++
T Consensus       265 ~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             CCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCC
T ss_pred             HhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCC
Confidence            3344455555555543322222 23455666777777766643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.17  E-value=9e-10  Score=80.89  Aligned_cols=172  Identities=16%  Similarity=0.243  Sum_probs=110.8

Q ss_pred             HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc---------------
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN---------------   66 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~---------------   66 (183)
                      .+|..|++|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++.+  .+|.++..|+.+.+..+               
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence            45778888888888754 34444 55667777777777553 2222  33444444433332221               


Q ss_pred             ------cccccCcccccCCCCCcEEEecCCcCc--------------------cCCCCCCCCCCCccEEEeeCCcCCCCC
Q psy13911         67 ------AITSLPDNCISAWSEMEELVLSGNGIS--------------------SLPNTIPQSWPHLRVLRLHSNHLTSCP  120 (183)
Q Consensus        67 ------~~~~~~~~~~~~~~~L~~l~l~~~~l~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~  120 (183)
                            .+..+...++..+..++.+.+..+...                    .++...+..+.+|+.+.+.++ ++.++
T Consensus       234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~  312 (394)
T 4fs7_A          234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIG  312 (394)
T ss_dssp             EEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred             eEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceec
Confidence                  122333444555666666665443211                    233445556777888877654 55443


Q ss_pred             --CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       121 --~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                        +|.+|.+|+.+++.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|.+|+.+++.
T Consensus       313 ~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence              588888999999864 488888888876 88999999876 888888999999999998874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=7.6e-13  Score=96.45  Aligned_cols=151  Identities=20%  Similarity=0.171  Sum_probs=106.8

Q ss_pred             CCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CC----C-CCCCCCCEEeeCCccccccCc----ccc
Q psy13911         10 SSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GP----L-NKCRQLNTLHVAYNAITSLPD----NCI   76 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~----~-~~l~~L~~l~l~~~~~~~~~~----~~~   76 (183)
                      .+.|+.|++++|.+..  +......+++|+.|++++|.++..  ..    + ...++|+.|++++|.++....    ..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3799999999999875  334445567899999999998765  22    2 357899999999999875322    234


Q ss_pred             cCCCCCcEEEecCCcCccC-----CCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCcccccccCCC
Q psy13911         77 SAWSEMEELVLSGNGISSL-----PNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHLERLNLNT  145 (183)
Q Consensus        77 ~~~~~L~~l~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~~  145 (183)
                      ...++|++|++++|.++..     ...+. ..++|+.|++++|.++...      .+..+++|++|++++|.+++.+...
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            6788999999999998732     22222 5678999999999998632      2445688999999999998765443


Q ss_pred             CCC---CC---ccEEE--cCCCCc
Q psy13911        146 LIP---KQ---LQYLD--VSGNPR  161 (183)
Q Consensus       146 ~~~---~~---l~~l~--l~~n~~  161 (183)
                      +..   ..   ++.+.  +..+.+
T Consensus       259 L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          259 LRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHCC------CEEECCCC----C
T ss_pred             HHHHhcCCCccchhhHhhhcCCcc
Confidence            321   12   56665  555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.15  E-value=1.5e-12  Score=100.10  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=19.9

Q ss_pred             CCccEEEcCCCCceeeCC-CCcCCCcceeEEEEE
Q psy13911        149 KQLQYLDVSGNPRLHVDP-NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       149 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~  181 (183)
                      ++|++|++++|.+++... ..+..+++|+.|++.
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence            677777777777554221 224566677766654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.06  E-value=7.7e-13  Score=101.74  Aligned_cols=57  Identities=9%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCceeeCCC-CcCCCcceeEEEEE
Q psy13911        125 SSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLHVDPN-HFKSYRSYVRVYIQ  181 (183)
Q Consensus       125 ~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~~~~~-~~~~~~~l~~l~l~  181 (183)
                      +++|+.|++++|.+++.....+.  .++|++|++++|++++.... ....+++|+.|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  514 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS  514 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence            56778888887777665433321  27888888888887554333 44557888888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=1.7e-08  Score=73.60  Aligned_cols=138  Identities=14%  Similarity=0.250  Sum_probs=85.2

Q ss_pred             ccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEE
Q psy13911         32 ENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL  109 (183)
Q Consensus        32 ~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L  109 (183)
                      ....++.+.+..+ +..+  .++.++..|+.+.+..+ ++.+...++..+.+++.+.+.. .+..++...+..+.+|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence            3444555555432 2222  45666677777776654 5555566666677777777643 3556666666677777777


Q ss_pred             EeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcc
Q psy13911        110 RLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS  174 (183)
Q Consensus       110 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~  174 (183)
                      .+.++.++.++  .|.+|.+|+.+.+.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|..
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            77766666553  467777777777753 366666666665 66777777544 66666677777643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.00  E-value=7.3e-09  Score=75.59  Aligned_cols=163  Identities=14%  Similarity=0.190  Sum_probs=118.2

Q ss_pred             HhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      ++..+..++.+.+..+ +..+. ..+.++..|+.+.+..+ ++.+  .+|.++.+|+.+.+.. .+..+...+|..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence            3456667777777544 44444 56778889999999765 5555  6788999999999875 4777788889999999


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      +.+.+.++.++.++..+|..+.+|+.+.+..+ ++.++  +|.+|.+|+.+.+..+ ++.++..++...++..+..   .
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~~~~---~  363 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITKYPT---W  363 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCCCCT---T
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCcCcc---c
Confidence            99999999999999999989999999999765 66554  6899999999998654 7888877876655443321   2


Q ss_pred             ceeeCCCCcCCCccee
Q psy13911        161 RLHVDPNHFKSYRSYV  176 (183)
Q Consensus       161 ~~~~~~~~~~~~~~l~  176 (183)
                      +....-..++.|.+|+
T Consensus       364 ~~~~~~~~f~~~~~Lk  379 (379)
T 4h09_A          364 LSKGNNGDYGIFTKIK  379 (379)
T ss_dssp             CEECTTSCEEC-----
T ss_pred             cccCceeehhhhhhcC
Confidence            3334345566666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=3.4e-10  Score=82.07  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             HHhhcCCCCcEEEccCCcCC----------CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcc
Q psy13911          5 LFLQNSSKLKVLNISKNCLK----------MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDN   74 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~   74 (183)
                      .+...+++|+.|.+......          .+...+..+++|+.|.++++.-.....+ .+++|+.|.+..+.+..-...
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHH
Confidence            34557789999988654321          1334456678999999987731122333 378899999988776532222


Q ss_pred             cc--cCCCCCcEEEecCC--c------CccCCCCCC-CCCCCccEEEeeCCcCCCC-----CCccCCCcccEEeccCccc
Q psy13911         75 CI--SAWSEMEELVLSGN--G------ISSLPNTIP-QSWPHLRVLRLHSNHLTSC-----PTLYLSSSLRVLDLSYNHL  138 (183)
Q Consensus        75 ~~--~~~~~L~~l~l~~~--~------l~~~~~~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~l~l~~n~l  138 (183)
                      .+  ..+++|+.|++..+  .      +..+..... ..+++|+.|++.+|.+...     .....++.|+.|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            23  25788999988531  1      111111111 2478999999998887641     1124567899999999988


Q ss_pred             ccccCCCCC-----CCCccEEEcCCCCcee
Q psy13911        139 ERLNLNTLI-----PKQLQYLDVSGNPRLH  163 (183)
Q Consensus       139 ~~~~~~~~~-----~~~l~~l~l~~n~~~~  163 (183)
                      ++.+...+.     .++|+.|++++|.+++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            875432221     1789999999887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.96  E-value=2.7e-08  Score=72.99  Aligned_cols=57  Identities=11%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        122 LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       122 ~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |.+|.+|+.+.+.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|.+|+.+++
T Consensus       307 F~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          307 FAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             ecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            45555555555543 255555555554 55666666433 55555556666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.95  E-value=4.1e-08  Score=72.06  Aligned_cols=122  Identities=11%  Similarity=0.252  Sum_probs=64.1

Q ss_pred             CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc
Q psy13911         52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR  129 (183)
Q Consensus        52 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~  129 (183)
                      |.++..|+.+.+..+ ...+...+|..+..|+.+.+. +.++.++...|+.+.+|+.+.+.++ ++.++  +|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            334444444444332 122333444455555555553 3455566666666777777777653 44432  466777777


Q ss_pred             EEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        130 VLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       130 ~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      .+.+.. .++.++..++.. .+|+.+++.++....   ..+..+..|+.+.+
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence            777743 366666666655 677777776654321   24455666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.89  E-value=2.8e-08  Score=72.96  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=99.4

Q ss_pred             ccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccE
Q psy13911         30 NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRV  108 (183)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~  108 (183)
                      +..+..++.+.+..+...-. .+|..+..++.+......   ++..++..+.+|+.+.+..+ ++.++..++..+.+|+.
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            33444555555544322111 445555566555554432   34455778888999988654 77888888889999999


Q ss_pred             EEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEE
Q psy13911        109 LRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRV  178 (183)
Q Consensus       109 L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l  178 (183)
                      +.+.++ ++.++  +|.+|.+|+.+.+..+ ++.++..++.. .+|+.+++..+ ++.+ ..+|.+|++|+.+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            999764 66554  6899999999999776 88888888877 89999999765 4444 4689999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=8.6e-10  Score=72.69  Aligned_cols=111  Identities=16%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             ccccccccEEEccCC-CCCCC------CCCCCCCCCCEEeeCCccccccC----cccccCCCCCcEEEecCCcCcc----
Q psy13911         30 NNENRYLEKLYLTSN-ALTDI------GPLNKCRQLNTLHVAYNAITSLP----DNCISAWSEMEELVLSGNGISS----   94 (183)
Q Consensus        30 ~~~~~~L~~L~l~~~-~~~~~------~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~----   94 (183)
                      +...+.|++|++++| .+...      ..+...++|++|++++|.+.+..    ...+...++|++|++++|.++.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344555666666665 55442      23344566666666666665321    1223444667777777776652    


Q ss_pred             -CCCCCCCCCCCccEEEe--eCCcCCCCC------CccCCCcccEEeccCcccccc
Q psy13911         95 -LPNTIPQSWPHLRVLRL--HSNHLTSCP------TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        95 -~~~~~~~~~~~L~~L~l--~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~  141 (183)
                       +...+. ..+.|++|++  ++|.++...      .+...++|++|++++|.+...
T Consensus       112 ~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          112 ALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence             222222 4567888888  667776421      244557788888888876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=6.8e-09  Score=75.30  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCC--CCCCCCCEEeeCC--cc------ccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPL--NKCRQLNTLHVAY--NA------ITS   70 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~l~l~~--~~------~~~   70 (183)
                      +..++..++.|+.|.+.++.-..++. + ..++|+.|++..+.+...  ..+  ..+++|+.|++..  +.      +..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            56778899999999998873223443 3 378999999998887654  222  3689999998853  21      111


Q ss_pred             cCcccc--cCCCCCcEEEecCCcCccCC----CCCCCCCCCccEEEeeCCcCCCC-----C-CccCCCcccEEeccCccc
Q psy13911         71 LPDNCI--SAWSEMEELVLSGNGISSLP----NTIPQSWPHLRVLRLHSNHLTSC-----P-TLYLSSSLRVLDLSYNHL  138 (183)
Q Consensus        71 ~~~~~~--~~~~~L~~l~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~l~l~~n~l  138 (183)
                      +.+ .+  ..+++|++|++.+|.+....    .... .+++|+.|+++.|.+++.     + .+..+++|+.|+++.|.+
T Consensus       242 l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          242 FRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            111 12  34789999999998876211    1111 468999999999988762     1 235678999999999988


Q ss_pred             ccccCCCCCCCCccEEEcCCCC
Q psy13911        139 ERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus       139 ~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      ++.....+...--..++++.++
T Consensus       320 ~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          320 SDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             CHHHHHHHHHHCCSEEECCSBC
T ss_pred             CHHHHHHHHHHcCCEEEecCCc
Confidence            8754433322113568888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=4.8e-09  Score=69.10  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=81.9

Q ss_pred             CCCCCCCCCEEeeCCc-ccccc----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCC-
Q psy13911         51 PLNKCRQLNTLHVAYN-AITSL----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSC-  119 (183)
Q Consensus        51 ~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~-  119 (183)
                      .+...+.|++|++++| .+...    ....+...++|++|++++|.+..     +...+. ..++|++|++++|.++.. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence            3556789999999998 88742    12335667899999999998872     222222 457899999999998862 


Q ss_pred             -----CCccCCCcccEEec--cCcccccccCCCCCC-----CCccEEEcCCCCcee
Q psy13911        120 -----PTLYLSSSLRVLDL--SYNHLERLNLNTLIP-----KQLQYLDVSGNPRLH  163 (183)
Q Consensus       120 -----~~~~~~~~L~~l~l--~~n~l~~~~~~~~~~-----~~l~~l~l~~n~~~~  163 (183)
                           ..+...++|++|++  ++|.+++.+...+..     +.|++|++++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                 24666778999999  889988765433322     789999999998753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=1.5e-07  Score=65.33  Aligned_cols=61  Identities=31%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             cCCCCcEEEccCCcCCCcc---ccccccccccEEEccCCCCCCCCCCCCCC--CCCEEeeCCcccc
Q psy13911          9 NSSKLKVLNISKNCLKMLP---SLNNENRYLEKLYLTSNALTDIGPLNKCR--QLNTLHVAYNAIT   69 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~L~~l~l~~~~~~   69 (183)
                      .++.|+.|++++|.+..++   ..+..+++|+.|++++|.++....+..+.  +|+.|++.+|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence            4555556666655555433   33445555555555555555542222222  5555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=4e-07  Score=63.17  Aligned_cols=78  Identities=22%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             CCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCcccccccC-CCCCCCCccEEEcCCCCceeeCC-------CCc
Q psy13911        102 SWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYNHLERLNL-NTLIPKQLQYLDVSGNPRLHVDP-------NHF  169 (183)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~~-------~~~  169 (183)
                      .+++|+.|++++|.+++++.    +..+++|+.|++++|.++++.. ..+...+|++|++++|++.+..+       ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            35778888888888887643    3467888888888888877621 12211378888888888765322       235


Q ss_pred             CCCcceeEEE
Q psy13911        170 KSYRSYVRVY  179 (183)
Q Consensus       170 ~~~~~l~~l~  179 (183)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            5667776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=1.6e-07  Score=60.94  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC-cCCCC--CCccC----CCcccEEeccCc-ccccccCCCCCC-CC
Q psy13911         80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSC--PTLYL----SSSLRVLDLSYN-HLERLNLNTLIP-KQ  150 (183)
Q Consensus        80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~----~~~L~~l~l~~n-~l~~~~~~~~~~-~~  150 (183)
                      ..|++++++++.++.........+++|++|++++| .+++.  ..+..    +++|++|++++| .+++.+...+.. ++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46888999988876432222247888999999988 46642  22333    347889999887 477765554443 88


Q ss_pred             ccEEEcCCCC-cee
Q psy13911        151 LQYLDVSGNP-RLH  163 (183)
Q Consensus       151 l~~l~l~~n~-~~~  163 (183)
                      |++|++++++ +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            8999988875 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=3.5e-07  Score=59.29  Aligned_cols=32  Identities=6%  Similarity=0.173  Sum_probs=17.2

Q ss_pred             cccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc
Q psy13911         35 YLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN   66 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~   66 (183)
                      .|+.|++++|.++..  ..+..+++|+.|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            455666665554443  34445555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=9.3e-05  Score=48.85  Aligned_cols=106  Identities=10%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             cccccccEEEccCC-CCCCC------CCCCCCCCCCEEeeCCccccccCc----ccccCCCCCcEEEecCCcCcc-----
Q psy13911         31 NENRYLEKLYLTSN-ALTDI------GPLNKCRQLNTLHVAYNAITSLPD----NCISAWSEMEELVLSGNGISS-----   94 (183)
Q Consensus        31 ~~~~~L~~L~l~~~-~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~l~~-----   94 (183)
                      ...+.|+.|+++++ ++...      .++..-+.|+.|++++|.+.+...    .++...++|++|+++.|.++.     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456666666654 55432      334455667777777777663222    223455677788887777762     


Q ss_pred             CCCCCCCCCCCccEEEeeCCcC---CCC------CCccCCCcccEEeccCcc
Q psy13911         95 LPNTIPQSWPHLRVLRLHSNHL---TSC------PTLYLSSSLRVLDLSYNH  137 (183)
Q Consensus        95 ~~~~~~~~~~~L~~L~l~~~~~---~~~------~~~~~~~~L~~l~l~~n~  137 (183)
                      +...+. .-+.|++|+++++..   ...      ..+...+.|..++++.|.
T Consensus       118 la~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            212222 345588888876532   211      123444667777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.25  E-value=0.00077  Score=41.44  Aligned_cols=36  Identities=36%  Similarity=0.618  Sum_probs=18.0

Q ss_pred             CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcC
Q psy13911         81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL  116 (183)
Q Consensus        81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  116 (183)
                      ++++|++++|.++.++...+..+++|+.|++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            345555555555555554444445555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00045  Score=42.48  Aligned_cols=56  Identities=25%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             cEEEeeCCcCC--CCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911        107 RVLRLHSNHLT--SCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus       107 ~~L~l~~~~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      ..++.+++.++  .+|. .-..+++.|+|++|.|+.++...+.. ++|+.|++++|++.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36788888887  7773 12247999999999999998887765 889999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.05  E-value=0.00034  Score=46.14  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             HHHHhhcCCCCcEEEccCC-cCCC-----ccccccccccccEEEccCCCCCCC--CC----CCCCCCCCEEeeCCccccc
Q psy13911          3 LELFLQNSSKLKVLNISKN-CLKM-----LPSLNNENRYLEKLYLTSNALTDI--GP----LNKCRQLNTLHVAYNAITS   70 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~--~~----~~~l~~L~~l~l~~~~~~~   70 (183)
                      +...+..-+.|+.|++.++ .+..     +...+...+.|+.|++++|++...  .+    +..-+.|+.|++++|.|.+
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            5566777899999999985 7763     345566778999999999999866  33    3455789999999999984


Q ss_pred             cC----cccccCCCCCcEEEecCCc---Ccc-----CCCCCCCCCCCccEEEeeCCc
Q psy13911         71 LP----DNCISAWSEMEELVLSGNG---ISS-----LPNTIPQSWPHLRVLRLHSNH  115 (183)
Q Consensus        71 ~~----~~~~~~~~~L~~l~l~~~~---l~~-----~~~~~~~~~~~L~~L~l~~~~  115 (183)
                      ..    ..++....+|++|+++++.   +..     +.... ..-+.|..|+++.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCC
Confidence            32    2335566789999998653   331     11111 134678888887654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.25  E-value=0.95  Score=26.10  Aligned_cols=39  Identities=26%  Similarity=0.356  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        50 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      .+|.+|++|+.+.+..+ ++.+...+|..|.+|+.+.+.+
T Consensus        14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            34455555555555432 3344444455555555555443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.35  E-value=1.2  Score=25.60  Aligned_cols=47  Identities=17%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             CCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc
Q psy13911         20 KNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA   67 (183)
Q Consensus        20 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~   67 (183)
                      +..++.|. ..|.++..|+.+.+..+ ++.+  .+|.+|.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            34566666 67888999999999864 4555  789999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 8   QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
              + L  L+++ N LK + +L +    L  L L +N ++++ PL+   +L  L +  N 
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274

Query: 68  ITSLPD--------------------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR 107
           I+++                      + IS    +  L L  N IS +      S   L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQ 332

Query: 108 VLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
            L   +N ++   +L   +++  L   +N +  L  L  L   ++  L ++  
Sbjct: 333 RLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           + + +KL+ L  + N +  + SL N    +  L    N ++D+ PL    ++  L +   
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSSLAN-LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

Query: 67  A 67
           A
Sbjct: 384 A 384

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
             N+ + + L++    + ++ +L       + +  + N +  +      R+L TL V  N
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
            I  + +    A  ++ EL+L+ N +  L +  P +            +  +    Y   
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQ 152
            +  +      +  L+   +  K+ Q
Sbjct: 134 VIYKV----PQVRVLDFQKVKLKERQ 155

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
                +L++  N +  +   + +N + L  L L +N ++ I P       +L  L+++ N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----TL 122
            +  LP+        ++EL +  N I+ +  ++      + V+ L +N L S        
Sbjct: 90  QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 123 YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
                L  + ++  ++  +     +P  L  L + GN    VD    
Sbjct: 147 QGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 6   FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
            L     +++         +        + L  + +    +T I P      L  LH+  
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLPPSLTELHLDG 180

Query: 66  NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
           N IT +    +   + + +L LS N IS++ N    + PHLR L L++N L   P     
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 126 -SSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
              ++V+ L  N++  +  N   P            + +  NP
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 3/142 (2%)

Query: 35  YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
           +L  +  +   L  + P +       L +  N IT + D        +  L+L  N IS 
Sbjct: 11  HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 95  LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQ 152
           +          L  L L  N L   P         LRV +     + +   N L    + 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 153 YLDVSGNPRLHVDPNHFKSYRS 174
            L  +      ++   F+  + 
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKK 151

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 65  YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
            NA ++   +       +EEL +S N +  LP       P L  L    NHL   P   L
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE--L 322

Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVS 157
             +L+ L + YN L        IP+ ++ L ++
Sbjct: 323 PQNLKQLHVEYNPLREF---PDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 79  WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
            SE+   +   N  S+   ++    P L  L + +N L   P   L   L  L  S+NHL
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHL 316

Query: 139 ERLNLNTLIPKQLQYLDVSGNP 160
             +     +P+ L+ L V  NP
Sbjct: 317 AEV---PELPQNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
              L  L+V+ N +  LP         +E L+ S N ++ +P        +L+ L +  N
Sbjct: 283 PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP----QNLKQLHVEYN 334

Query: 115 HLTSCPTLYLSSSLRVLDLS 134
            L   P   +  S+  L ++
Sbjct: 335 PLREFPD--IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 11  SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
             L+ LN+S N L  LP+L      LE+L  + N L ++  L   + L  LHV YN +  
Sbjct: 284 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE 338

Query: 71  LPD 73
            PD
Sbjct: 339 FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 83  EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLN 142
            EL L+  G+SSLP   P    HL  L    N LT  P   L  SL+ L +  N+L+ L+
Sbjct: 41  HELELNNLGLSSLPELPP----HLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALS 94

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 14  KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLP 72
           +VL+++   L +L  L      +  L L+ N L  + P L   R L  L  + NA+ ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQ-LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 73  DNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTL 122
                    ++EL+L  N +       P  S P L +L L  N L     +
Sbjct: 60  GVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 39  LYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNT 98
           L+L    LT +  L +   +  L +++N + +LP    +               +     
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV- 61

Query: 99  IPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERL 141
              + P L+ L L +N L        L     L +L+L  N L + 
Sbjct: 62  --ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 60  TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
            LH+A+  +T L    +     +  L LS N + +LP  +  +   L VL+   N L + 
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENV 58

Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNP 160
             +     L+ L L  N L++      +    +L  L++ GN 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 12  KLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAI 68
            L+ L +  N L+ L      +   L  L+L  N ++ +          L+ L +  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 69  TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLSSS 127
             +  +       +  L L  N +S+LP         L+ LRL+ N     C    L + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 128 LRVLDLSYNHL 138
           L+    S + +
Sbjct: 250 LQKFRGSSSEV 260

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 2/156 (1%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
           L   ++L  LN+ +  L  L                +   +          L  L V++N
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 67  AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
            +TSLP   +    E++EL L GN + +LP  +    P L  L L +N+LT  P   L  
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
             +L  L L  N L  +         L +  + GNP
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 7   LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN----KCRQLNTLH 62
           L   +   VLN   +    L  +      L  L L++N L  +  ++    K   L  L+
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 63  VAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
           ++ N + S  +       ++EEL L GN +S   
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 55  CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
            +         N +  LP++     S    L +S   I SLP+   ++   LR       
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--Y 233

Query: 115 HLTSCPTL 122
           +L   PTL
Sbjct: 234 NLKKLPTL 241

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 12/117 (10%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 10  SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQLNTLHV 63
              LK+  I+    K + ++  E+  ++++ L+ N +           +   + L     
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 64  AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
           +      + D    A   + + +L    + ++  +     P  +   +      +  
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=140.46  Aligned_cols=169  Identities=24%  Similarity=0.257  Sum_probs=138.1

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      +.++.|++++|.+++++ ..|.++++|+.|++++|+++.++.+..+++|+.|++++|.++..+. .+..+++|+.+++.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            46889999999998877 6688889999999999998887777788899999999998887655 377788899999998


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCC
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDP  166 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~  166 (183)
                      +.+..++...+..+.+++.+++.+|.++.++  .+..++.++.+++++|.+++++...+.. ++|++|++++|.++.+ |
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-P  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-C
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc-C
Confidence            8888877777667888889999888888775  3566778889999999888888776665 8889999999988866 5


Q ss_pred             CCcCCCcceeEEEEE
Q psy13911        167 NHFKSYRSYVRVYIQ  181 (183)
Q Consensus       167 ~~~~~~~~l~~l~l~  181 (183)
                      ..+..+++|+.|+|+
T Consensus       189 ~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLH  203 (266)
T ss_dssp             TTTTTTCCCSEEECC
T ss_pred             hhHCCCCCCCEEEec
Confidence            555578888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-21  Score=134.67  Aligned_cols=159  Identities=29%  Similarity=0.344  Sum_probs=143.7

Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911          4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM   82 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L   82 (183)
                      +..|+.+++|++|++++|.++.++. +..+++|+.|++++|+++.. ..+..+++|+.++++++.+..+....+..+.++
T Consensus        48 ~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          48 LATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (266)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             HHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeecccccccccc
Confidence            3578999999999999999998874 46789999999999999887 677889999999999999998888888889999


Q ss_pred             cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911         83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP  160 (183)
Q Consensus        83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~  160 (183)
                      +.+++.+|.++.++...+..++.++.+++++|.+++++  .+..+++|++|++++|.++.++...+..++++.|++++|+
T Consensus       127 ~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            99999999999999988878899999999999999876  3788899999999999999998777767999999999999


Q ss_pred             cee
Q psy13911        161 RLH  163 (183)
Q Consensus       161 ~~~  163 (183)
                      +.+
T Consensus       207 ~~C  209 (266)
T d1p9ag_         207 WLC  209 (266)
T ss_dssp             BCC
T ss_pred             CCC
Confidence            875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.1e-21  Score=131.93  Aligned_cols=170  Identities=21%  Similarity=0.270  Sum_probs=110.7

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--C-------------------------CCCCCCCCCEEe
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--G-------------------------PLNKCRQLNTLH   62 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~-------------------------~~~~l~~L~~l~   62 (183)
                      +.+++|++++|.++.+| ..|.++++|+.++++++.+..+  .                         .+.++++|++++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            45788889988888877 5688888888888888877544  2                         234455666666


Q ss_pred             eCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCccccc
Q psy13911         63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        63 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~  140 (183)
                      +.+|.+..+....+....+|+.+++.+|.++.++...++.+++++.|++++|.++.++  .+.++++|+.+++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            6666665555555555666666666666666666555555666666666666666543  35556666666666666666


Q ss_pred             ccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        141 LNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       141 ~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +.+..+.. +++++|++++|.+..+++..|.++++|+.+++
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            65555444 56666666666666666666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-21  Score=134.41  Aligned_cols=160  Identities=28%  Similarity=0.368  Sum_probs=138.3

Q ss_pred             HHhhcCCCCcEEEccCCcCCCc--------------------------cccccccccccEEEccCCCCCCC--CCCCCCC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKML--------------------------PSLNNENRYLEKLYLTSNALTDI--GPLNKCR   56 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~   56 (183)
                      .+|.+++.|++++++++.+..+                          +..+.++++|+.|++++|.+...  ..+....
T Consensus        50 ~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  129 (284)
T d1ozna_          50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc
Confidence            4678888999999888765421                          23466778999999999998776  5677789


Q ss_pred             CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEecc
Q psy13911         57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLS  134 (183)
Q Consensus        57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~  134 (183)
                      +|+.+++.+|.++.+++..+..+++++++++.+|.++.++...+..+++|+.+++++|.+++++  .+..++++++++++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            9999999999999998888999999999999999999999888878999999999999998763  48888999999999


Q ss_pred             CcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911        135 YNHLERLNLNTLIP-KQLQYLDVSGNPRLHV  164 (183)
Q Consensus       135 ~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~  164 (183)
                      +|.+.+++...+.. +++++|++++|++.+.
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccccccccccccccccCEEEecCCCCCCC
Confidence            99999988776655 8899999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=8.5e-21  Score=126.56  Aligned_cols=165  Identities=22%  Similarity=0.272  Sum_probs=141.7

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .+..++++++.++.+..++. +..+++|+.|++++|.++.+.++..+++|+.|++++|.++.++.  +..+++|+.+++.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccc
Confidence            45689999999999988764 67899999999999999998778889999999999999988753  7889999999999


Q ss_pred             CCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCC
Q psy13911         89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH  168 (183)
Q Consensus        89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  168 (183)
                      ++.+..++.  +..++.++.+++++|.+++.+....+++|+.+++++|.+++++. ....++|++|++++|.+++++  .
T Consensus       121 ~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~--~  195 (210)
T d1h6ta2         121 HNGISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--A  195 (210)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--G
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh--h
Confidence            998877653  23688999999999999887778888999999999999988753 122389999999999998863  6


Q ss_pred             cCCCcceeEEEEE
Q psy13911        169 FKSYRSYVRVYIQ  181 (183)
Q Consensus       169 ~~~~~~l~~l~l~  181 (183)
                      +.++++|+.|+|+
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            8999999999985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1.6e-20  Score=124.26  Aligned_cols=163  Identities=21%  Similarity=0.288  Sum_probs=138.8

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      ..+..+++|++.++.+..++ .+..+++|++|++++|+++....+..+++|+.|++.+|.+..+++  +..++.|+.+++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l  113 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  113 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--cccccccccccc
Confidence            35688999999999999875 367889999999999999998778999999999999998887664  788999999999


Q ss_pred             cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCC
Q psy13911         88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  167 (183)
                      .++.....+. . ..+++|+.+++++|.+..++.+..+++++.+++.+|.+++++. ....++|++|++++|++++++  
T Consensus       114 ~~~~~~~~~~-~-~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~--  188 (199)
T d2omxa2         114 FNNQITDIDP-L-KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS--  188 (199)
T ss_dssp             CSSCCCCCGG-G-TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--
T ss_pred             cccccccccc-c-chhhhhHHhhhhhhhhcccccccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc--
Confidence            9998876543 2 3789999999999999988888889999999999999998753 122389999999999998863  


Q ss_pred             CcCCCcceeEE
Q psy13911        168 HFKSYRSYVRV  178 (183)
Q Consensus       168 ~~~~~~~l~~l  178 (183)
                      .+.++++|+.|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            57788888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.2e-19  Score=122.24  Aligned_cols=168  Identities=16%  Similarity=0.200  Sum_probs=126.7

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL   87 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   87 (183)
                      +.+.+|+.|++.++.+.+++ .+..+++|+.|++++|.+....++..+++++.+++.+|.++.+..  +..+++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--cccccccccccc
Confidence            45667888888888887774 467788888888888887777667777888888888777765543  566777777777


Q ss_pred             cCCcCccCCC--------------------CCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCC
Q psy13911         88 SGNGISSLPN--------------------TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI  147 (183)
Q Consensus        88 ~~~~l~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~  147 (183)
                      .++.....+.                    ..+..+++++++++++|.+.+.+.+..+++|+.|++++|.+++++.- ..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l-~~  193 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-AS  193 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG-GG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhh-cC
Confidence            6654331110                    11125677899999999888877788899999999999999987531 12


Q ss_pred             CCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        148 PKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       148 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      .++|++|++++|+++++++  +.++++|+.|+++
T Consensus       194 l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            2899999999999998753  8899999999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=4.4e-20  Score=121.42  Aligned_cols=157  Identities=21%  Similarity=0.250  Sum_probs=119.7

Q ss_pred             CcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      .+.++.++++++.+|..+  .+++++|++++|+++..   ..|.++++|+.|++++|.+..+++..+..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            467888899999988655  36889999999998764   5678889999999999999988888888899999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCC
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  167 (183)
                      |+++.++..++..+++|++|++++|.++.++  .+..+++|+++++++|.+.......+....++.+.+..+.+++..|.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh
Confidence            9999998888878999999999999998875  37788899999999887654321111112334444555555555555


Q ss_pred             CcCC
Q psy13911        168 HFKS  171 (183)
Q Consensus       168 ~~~~  171 (183)
                      .+.+
T Consensus       168 ~l~~  171 (192)
T d1w8aa_         168 KVRD  171 (192)
T ss_dssp             TTTT
T ss_pred             hhcC
Confidence            4444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.2e-18  Score=122.18  Aligned_cols=166  Identities=21%  Similarity=0.363  Sum_probs=91.6

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCc--------------
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPD--------------   73 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~--------------   73 (183)
                      +.+++|++++|.++.++ ..|.++++|+.|++++|.+..+  ..|.++++|+.+++.+|.++.++.              
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            56778888888888777 4577778888888888887776  457777777777777766543322              


Q ss_pred             ---------------------------------ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC
Q psy13911         74 ---------------------------------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP  120 (183)
Q Consensus        74 ---------------------------------~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  120 (183)
                                                       ..+..+++++.+++.+|.+..++...   +++++.|++.+|..+..+
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEEC
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc---CCccCEEECCCCcCCCCC
Confidence                                             11233344555555555554444332   234445555544433321


Q ss_pred             --CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       121 --~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                        .+..++.++.|++++|.+++++...+.. ++|++|++++|.++.+ |.++.++++|+.|+|
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~L  249 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYL  249 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEEC
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEEC
Confidence              2334444445555555554444333322 4455555555555444 334445555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=5.8e-19  Score=127.15  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=109.4

Q ss_pred             cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911          9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS   88 (183)
Q Consensus         9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   88 (183)
                      .+++|+.+++.+|.+..++ .+..+++++.+++++|.+++...+..+++|+.++++++.+..+++  +..+..++.+.+.
T Consensus       217 ~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~  293 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  293 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc--ccccccccccccc
Confidence            3444555555555444443 234445555555555555555445555555555555555554433  4445555555555


Q ss_pred             CCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCC-CCCccEEEcCCCCceeeCCC
Q psy13911         89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI-PKQLQYLDVSGNPRLHVDPN  167 (183)
Q Consensus        89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~l~~l~l~~n~~~~~~~~  167 (183)
                      .+.++.++.  ...+++++.+++++|.+++++.+..+++|+.|++++|.+++++.  +. .++|++|++++|+++++.| 
T Consensus       294 ~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccc--cchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCCcCCCChh-
Confidence            555554432  22567889999999999988778888999999999999988752  33 3899999999999998754 


Q ss_pred             CcCCCcceeEEEEE
Q psy13911        168 HFKSYRSYVRVYIQ  181 (183)
Q Consensus       168 ~~~~~~~l~~l~l~  181 (183)
                       +.++++|+.|+|+
T Consensus       369 -l~~l~~L~~L~L~  381 (384)
T d2omza2         369 -LANLTRITQLGLN  381 (384)
T ss_dssp             -GTTCTTCSEEECC
T ss_pred             -hccCCCCCEeeCC
Confidence             8899999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1.4e-19  Score=127.52  Aligned_cols=178  Identities=22%  Similarity=0.272  Sum_probs=124.8

Q ss_pred             HHHHhhcCCCCcEEEccC-CcCC-CccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccC
Q psy13911          3 LELFLQNSSKLKVLNISK-NCLK-MLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISA   78 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   78 (183)
                      ++..++++++|++|++++ |.+. .+|..+.++++|++|++++|++.+.  ..+..+..|+.+++..|.+....+..+..
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            567889999999999986 6776 5888899999999999999988776  44667788888888888777666666788


Q ss_pred             CCCCcEEEecCCcCc-cCCCCCCCCCCC-ccEEEeeCCcCCCC------------------------C-CccCCCcccEE
Q psy13911         79 WSEMEELVLSGNGIS-SLPNTIPQSWPH-LRVLRLHSNHLTSC------------------------P-TLYLSSSLRVL  131 (183)
Q Consensus        79 ~~~L~~l~l~~~~l~-~~~~~~~~~~~~-L~~L~l~~~~~~~~------------------------~-~~~~~~~L~~l  131 (183)
                      ++.++++++.+|.+. .+|..+. .+.. ++.+.+++|.+++.                        + .+...++++.+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             Ccccceeeccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888888888776 4444443 3333 35555555544321                        1 12344566677


Q ss_pred             eccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        132 DLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       132 ~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++++|.++..++.....++++.|++++|++++..|..+.++++|+.|+|+
T Consensus       227 ~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            77777666554433334677777777777777667777777777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.3e-18  Score=115.96  Aligned_cols=157  Identities=19%  Similarity=0.228  Sum_probs=120.8

Q ss_pred             EccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCC
Q psy13911         17 NISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP   96 (183)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~   96 (183)
                      ++..+.+.++. .+..+.+|+.|++.+|.++.+..+..+++|+.+++++|.+..+.+  +..+++++.+++.+|.++.++
T Consensus        25 ~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG
T ss_pred             HhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc
Confidence            44455555532 446688999999999999988888999999999999999987765  888999999999999888765


Q ss_pred             CCCCCCCCCccEEEeeCCcCCCCC----------------------CccCCCcccEEeccCcccccccCCCCCCCCccEE
Q psy13911         97 NTIPQSWPHLRVLRLHSNHLTSCP----------------------TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYL  154 (183)
Q Consensus        97 ~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l  154 (183)
                      . +. .+++|+.+.++++...+.+                      .+..++.++.+++++|.+++... ....++|++|
T Consensus       102 ~-l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  178 (227)
T d1h6ua2         102 A-IA-GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (227)
T ss_dssp             G-GT-TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             c-cc-ccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceec
Confidence            3 22 6788999988887654321                      23445678888888888776543 1122889999


Q ss_pred             EcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        155 DVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       155 ~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                      ++++|.+++++  .+.++++|+.|+|+
T Consensus       179 ~Ls~n~l~~l~--~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         179 KADDNKISDIS--PLASLPNLIEVHLK  203 (227)
T ss_dssp             ECCSSCCCCCG--GGGGCTTCCEEECT
T ss_pred             ccCCCccCCCh--hhcCCCCCCEEECc
Confidence            99999988763  47889999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.9e-18  Score=114.13  Aligned_cols=145  Identities=23%  Similarity=0.308  Sum_probs=124.6

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +..+++|++|++++|.++.++. +..+++|+.|++++|+++.+..+..+++|+.+++.++.+..+..  +..++.++.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~--l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            6789999999999999998874 57889999999999999998888899999999999998876543  77889999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVS  157 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~  157 (183)
                      +.++.++..+..  ..+++|+.+++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|+++
T Consensus       141 ~~~n~l~~~~~~--~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         141 LGNNKITDITVL--SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCCGGG--GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccccCCCCCCEEECCCCCCCCChh-hcCCCCCCEEEcc
Confidence            999998765432  3688999999999999988778899999999999999998752 2222899999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7.4e-18  Score=111.22  Aligned_cols=143  Identities=24%  Similarity=0.325  Sum_probs=121.6

Q ss_pred             HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911          6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus         6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   85 (183)
                      .++.+++|++|++++|.++++++ +.++++|+.|++++|.+....++.+++.|+.+++.++......+  +..+++|+.+
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  133 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  133 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccc--cchhhhhHHh
Confidence            36789999999999999998876 78899999999999999888778899999999999988876543  7789999999


Q ss_pred             EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEE
Q psy13911         86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYL  154 (183)
Q Consensus        86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l  154 (183)
                      ++++|.+..++. . ..+++++.+++.+|.+++++.++.+++|++|++++|.+++++.- ...++|++|
T Consensus       134 ~l~~n~l~~~~~-l-~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~~l-~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDISA-L-SGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG-GGCTTCSEE
T ss_pred             hhhhhhhccccc-c-cccccccccccccccccCCccccCCCCCCEEECCCCCCCCCccc-cCCCCCCcC
Confidence            999999887653 3 37899999999999999988889999999999999999987521 112566554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=110.98  Aligned_cols=126  Identities=21%  Similarity=0.310  Sum_probs=88.5

Q ss_pred             hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911          7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +.++..+++|++++|.++.++..+..+++|+.|++++|+++.+..+..+++|++|++++|.++.+++..+..++++++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34566778888888888887766667777888888888777776677777788888887777777666566677777777


Q ss_pred             ecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEe
Q psy13911         87 LSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLD  132 (183)
Q Consensus        87 l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~  132 (183)
                      +.+|.++.++. ..+..+++|+++++++|.++..+.     +..+++|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777765543 223356777777777777666553     44556666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=8.8e-17  Score=112.57  Aligned_cols=165  Identities=23%  Similarity=0.325  Sum_probs=116.0

Q ss_pred             CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911         12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG   89 (183)
Q Consensus        12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   89 (183)
                      ..+.++-.+..++++|..+  .++++.|++++|+++.+  ..|.++++|+++++.+|.+..+.+..+..++.++++++.+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4567888888999999765  36899999999999998  4689999999999999999999888899999999999999


Q ss_pred             CcCccCCCCCCCCCCCccEEEeeCCcCCCCC----------------------------CccCCCcccEEeccCcccccc
Q psy13911         90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----------------------------TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus        90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------------~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      |.++.++....   ..+..+...+|.+..++                            .+..+++++.+++++|.++.+
T Consensus        89 n~l~~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 NQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CccCcCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            98887775543   34455555554432210                            122234455555555554443


Q ss_pred             ---------------------cCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911        142 ---------------------NLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       142 ---------------------~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~  181 (183)
                                           ....+.. +.+++|++++|.++++.+..+.++++|+.|+|+
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence                                 3222222 456667777777777666677777777776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=5e-18  Score=111.44  Aligned_cols=153  Identities=20%  Similarity=0.160  Sum_probs=121.9

Q ss_pred             CCCcEEEccCCcCCC-cc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911         11 SKLKVLNISKNCLKM-LP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV   86 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   86 (183)
                      +.+++|++++|.++. ++ ..|..+++|+.|++++|.+..+  ..+..+++|+.|++++|.++.+++.+|..+++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            579999999999986 44 6788999999999999999888  7788899999999999999999999999999999999


Q ss_pred             ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCcc-CCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911         87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY-LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD  165 (183)
Q Consensus        87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~  165 (183)
                      +.+|.++.++..+++.+++|+++++++|.+....... ....++...+..+.++-..+..+  ..+..++++.|.+++..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l--~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV--RDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT--TTSBGGGSCTTTCCCCC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhh--cCCEeeecCHhhCcCCC
Confidence            9999999999998889999999999999887543211 11234445555555543222222  44556678888887653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.2e-17  Score=116.42  Aligned_cols=169  Identities=24%  Similarity=0.283  Sum_probs=144.3

Q ss_pred             HHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911          5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      .....++.++.+++.++.+..++. +..+++++.+++++|+++..+.+..+++|+.+++.+|.++.+++  +..+++|++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  267 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  267 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             cccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCCE
Confidence            456788999999999999888764 35678999999999999988778889999999999999988765  778899999


Q ss_pred             EEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911         85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV  164 (183)
Q Consensus        85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~  164 (183)
                      ++++++.+..++..  ..+..++.+.+.+|.+++++.+..+++++.+++++|.+++++. ....++|++|++++|.++++
T Consensus       268 L~l~~~~l~~~~~~--~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         268 LKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             EECCSSCCCCCGGG--TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             eeccCcccCCCCcc--ccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCC
Confidence            99999999877653  2678899999999999988778888999999999999998753 22238999999999999876


Q ss_pred             CCCCcCCCcceeEEEEE
Q psy13911        165 DPNHFKSYRSYVRVYIQ  181 (183)
Q Consensus       165 ~~~~~~~~~~l~~l~l~  181 (183)
                      +  .+.++++|+.|+++
T Consensus       345 ~--~l~~l~~L~~L~l~  359 (384)
T d2omza2         345 S--SLANLTNINWLSAG  359 (384)
T ss_dssp             G--GGGGCTTCCEEECC
T ss_pred             h--hHcCCCCCCEEECC
Confidence            3  68999999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=4.7e-18  Score=119.55  Aligned_cols=177  Identities=19%  Similarity=0.142  Sum_probs=132.1

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW   79 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   79 (183)
                      +|..++++++|++|++++|.+.+++ ..+..+..|+.++++.|.+...  ..+..++.++.+++.+|.+....+..+..+
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc
Confidence            5678999999999999999998754 6678888999999998886655  567888899999999888875544445555


Q ss_pred             CCC-cEEEecCCcCc-----------------------cCCCCCCCCCCCccEEEeeCCcCCCC-CCccCCCcccEEecc
Q psy13911         80 SEM-EELVLSGNGIS-----------------------SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLSSSLRVLDLS  134 (183)
Q Consensus        80 ~~L-~~l~l~~~~l~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~l~  134 (183)
                      ..+ +.+++.+|.++                       .........+++++.+++.++.+.+. +.++.+++++.++++
T Consensus       173 ~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls  252 (313)
T d1ogqa_         173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCc
Confidence            553 66666665443                       11222223567888999999887764 457778899999999


Q ss_pred             CcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        135 YNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       135 ~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +|.+++..+..+.. ++|++|++++|.+++..|. +..+++|+.+++
T Consensus       253 ~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             cCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            99999644444443 8999999999999986664 466777765543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-16  Score=108.68  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=115.3

Q ss_pred             CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEE
Q psy13911         11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEEL   85 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l   85 (183)
                      +++++|++++|.+..++ ..|.++++|++|++++|.+...   .+|.+++.++.+.+.. +.+...++..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47889999999998887 4678899999999999887654   4567788888887653 56766777777888888888


Q ss_pred             EecCCcCccCCCCC-CCCCC-------------------------CccEEEeeCCcCCCCCC-ccCCCcccEE-eccCcc
Q psy13911         86 VLSGNGISSLPNTI-PQSWP-------------------------HLRVLRLHSNHLTSCPT-LYLSSSLRVL-DLSYNH  137 (183)
Q Consensus        86 ~l~~~~l~~~~~~~-~~~~~-------------------------~L~~L~l~~~~~~~~~~-~~~~~~L~~l-~l~~n~  137 (183)
                      ++.++.+...+... ...+.                         .++.+++.+|.++.++. ....+.+..+ .+++|.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            88887665443211 11112                         34445555555544432 2222333333 456667


Q ss_pred             cccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911        138 LERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       138 l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      +++++...+.. ++|++|++++|+++.+++..|.+++.|+.+++
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            77777666554 78888888888888887778888888776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.2e-16  Score=106.19  Aligned_cols=148  Identities=22%  Similarity=0.223  Sum_probs=103.2

Q ss_pred             HHhhcCCCCcEEEccCCcCCC-cc-ccccccccccEEEccC-CCCCCC--CCCCCCCCCCEEeeCCccccc---------
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM-LP-SLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTLHVAYNAITS---------   70 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~L~l~~-~~~~~~--~~~~~l~~L~~l~l~~~~~~~---------   70 (183)
                      .+|.++++|++|++++|.+.. ++ ..|..++.++.+.+.. +.+...  ..+.++++|+.+++.++.+..         
T Consensus        47 ~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~  126 (242)
T d1xwdc1          47 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  126 (242)
T ss_dssp             TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCB
T ss_pred             hHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            468889999999999998765 43 4566777777777654 344444  446677777777777665542         


Q ss_pred             ----------------cCcccccCC-CCCcEEEecCCcCccCCCCCCCCCCCccEE-EeeCCcCCCCCC--ccCCCcccE
Q psy13911         71 ----------------LPDNCISAW-SEMEELVLSGNGISSLPNTIPQSWPHLRVL-RLHSNHLTSCPT--LYLSSSLRV  130 (183)
Q Consensus        71 ----------------~~~~~~~~~-~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~--~~~~~~L~~  130 (183)
                                      ++...+..+ ..+..+++.++.++.++...+ ...+++.+ .+.+|.++.+|.  +..+++|+.
T Consensus       127 l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCE
Confidence                            222223333 356677888888888888777 55666665 456678988864  788999999


Q ss_pred             EeccCcccccccCCCCCCCCccEEE
Q psy13911        131 LDLSYNHLERLNLNTLIPKQLQYLD  155 (183)
Q Consensus       131 l~l~~n~l~~~~~~~~~~~~l~~l~  155 (183)
                      |++++|.++.++...+  .++..|.
T Consensus       206 L~Ls~N~l~~l~~~~~--~~l~~L~  228 (242)
T d1xwdc1         206 LDISRTRIHSLPSYGL--ENLKKLR  228 (242)
T ss_dssp             EECTTSCCCCCCSSSC--TTCCEEE
T ss_pred             EECCCCcCCccCHHHH--cCCcccc
Confidence            9999999999877655  4444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.6e-17  Score=99.24  Aligned_cols=100  Identities=26%  Similarity=0.340  Sum_probs=47.6

Q ss_pred             EEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCC
Q psy13911         38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT  117 (183)
Q Consensus        38 ~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  117 (183)
                      .|++++|.++....+..++.|++|++++|.++.+++. +..+++|+++++++|.++.++. + ..+++|+.+++++|.++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG-V-ANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc-c-ccccccCeEECCCCccC
Confidence            4555555555544445555555555555555544332 4445555555555555544432 1 14445555555555444


Q ss_pred             CCCC---ccCCCcccEEeccCccccc
Q psy13911        118 SCPT---LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus       118 ~~~~---~~~~~~L~~l~l~~n~l~~  140 (183)
                      .++.   +..+++|+.+++++|.+++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCc
Confidence            4331   3333444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=6.9e-16  Score=93.93  Aligned_cols=101  Identities=26%  Similarity=0.324  Sum_probs=53.4

Q ss_pred             EEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccc
Q psy13911         60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLE  139 (183)
Q Consensus        60 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~  139 (183)
                      .|++++|.++.++.  +..+..++++++++|.++.+|..+. .+++|+.|++++|.+++++.+..+++|+.+++++|.++
T Consensus         2 ~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~-~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhh-hhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            45555555554432  4555555555555555555554332 45555555555555555555555555555555555555


Q ss_pred             cccC-CCCCC-CCccEEEcCCCCcee
Q psy13911        140 RLNL-NTLIP-KQLQYLDVSGNPRLH  163 (183)
Q Consensus       140 ~~~~-~~~~~-~~l~~l~l~~n~~~~  163 (183)
                      +++. ..+.. ++++++++++|++++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCc
Confidence            5432 11211 555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-16  Score=100.19  Aligned_cols=110  Identities=20%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             ccccccccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccE
Q psy13911         30 NNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRV  108 (183)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~  108 (183)
                      +.++..+++|++++|+|+.++. +..+++|+.|++++|.++.++.  +..+++|+++++++|.++.++..++..+++++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccc
Confidence            3455567777777777776633 3456677777777777666532  566666777777777776666655445666677


Q ss_pred             EEeeCCcCCCCC---CccCCCcccEEeccCcccccc
Q psy13911        109 LRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERL  141 (183)
Q Consensus       109 L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~  141 (183)
                      |++++|.++.++   .+..+++|+++++++|.++..
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccc
Confidence            777776666543   244556666666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.9e-14  Score=88.63  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             hcCCCCcEEEccCCcCCCccccccccccccEEEccCC-CCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911          8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSN-ALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE   84 (183)
Q Consensus         8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   84 (183)
                      +.+.....++..++.+..+|..+..+++++.|++.++ .++.+  .+|.++++|+.|++++|.++.+++.+|..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3455667788888888888877778888888888765 47776  56888888888888888888888888888888888


Q ss_pred             EEecCCcCccCCCCCCCCCCCccEEEeeCCcCC
Q psy13911         85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT  117 (183)
Q Consensus        85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  117 (183)
                      +++++|+++.++..++ ....++.|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhh-ccccccccccCCCccc
Confidence            8888888888888777 4456888888888664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=2.6e-17  Score=108.38  Aligned_cols=127  Identities=24%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             CcEEEccCC--cCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         13 LKVLNISKN--CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        13 L~~l~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      ++.+++.+.  .+..++..+..+++|++|++++|.++.+..+..+++|+.|++++|.++.++.. ...+++|+++++.+|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc
Confidence            444555443  34445556667777777777777777666666677777777777777665432 333456777777777


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCccccccc
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLN  142 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~  142 (183)
                      .++.++. + ..+++|+.|++++|.++.++   .+..+++|+.|++++|.+....
T Consensus       104 ~i~~l~~-~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         104 QIASLSG-I-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ECCCHHH-H-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccc-c-cccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            6665532 2 24566777777777666543   3556666777777776655443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.3e-13  Score=84.58  Aligned_cols=140  Identities=19%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             cccEEEccCCCCCCC-CCCCCCCCCCEEeeCCc-cccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEee
Q psy13911         35 YLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYN-AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH  112 (183)
Q Consensus        35 ~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~  112 (183)
                      ....++.+++.+... ..+..+++|+.|++.++ .++.+++.+|..+++|+.|++++|.++.++...+..+++|+.|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345677777776665 66778889999999765 5888888889899999999999999999988877788999999999


Q ss_pred             CCcCCCCCC-ccCCCcccEEeccCcccc-cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcc
Q psy13911        113 SNHLTSCPT-LYLSSSLRVLDLSYNHLE-RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS  174 (183)
Q Consensus       113 ~~~~~~~~~-~~~~~~L~~l~l~~n~l~-~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~  174 (183)
                      +|.++.++. ......++.|++++|.+. +....++.. .......+..+.+++..|..+.+++.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            999998763 333447889999998764 111111111 01112223345567767776766653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=3.2e-16  Score=103.07  Aligned_cols=127  Identities=24%  Similarity=0.258  Sum_probs=101.8

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCC-CCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL-NKCRQLNTLHVAYNAITSLPDNCISAWSE   81 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~   81 (183)
                      ++..++.+++|++|++++|.+..++ .+..+++|+.|++++|.++.++.+ ..++.|+.|++.+|.++.+++  +..+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~  116 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccc--cccccc
Confidence            4678999999999999999999886 578899999999999999887443 334689999999999987643  778899


Q ss_pred             CcEEEecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCC-C-----------ccCCCcccEEe
Q psy13911         82 MEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCP-T-----------LYLSSSLRVLD  132 (183)
Q Consensus        82 L~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~-----------~~~~~~L~~l~  132 (183)
                      |+.+++++|.++.++. ..+..+++|+.|++++|.+...+ .           +..+++|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999987653 23347899999999999876431 1           33456677665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=3.6e-11  Score=84.78  Aligned_cols=57  Identities=30%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CCCcEEEccCCcCCCcccccccc-----------------ccccEEEccCCCCCCCCCCCCCCCCCEEeeCCcc
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNEN-----------------RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA   67 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~-----------------~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~   67 (183)
                      ++|++|++++|.++.+|..+.++                 +.|++|++++|.+..++.+..+++|+.+++.++.
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhccccccccccccccccccchhhhccceeecccccc
Confidence            45666666666666655332111                 2345555555555544444455566666555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-14  Score=98.77  Aligned_cols=171  Identities=18%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             CCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc-cccccC-cccccCCCCCc
Q psy13911         10 SSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN-AITSLP-DNCISAWSEME   83 (183)
Q Consensus        10 ~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~-~~~~~~-~~~~~~~~~L~   83 (183)
                      ...|++|+++++.+..  +...+..+++|++|.+++|.+...  ..+..+++|+.|+++++ .+++.. ......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3466777777666553  344556667777777777765543  44556667777777663 343211 11133456677


Q ss_pred             EEEecCC-cCc--cCCCCCCCCCCCccEEEeeCC--cCCC--CCC-ccCCCcccEEeccCc-ccccccCCCCCC-CCccE
Q psy13911         84 ELVLSGN-GIS--SLPNTIPQSWPHLRVLRLHSN--HLTS--CPT-LYLSSSLRVLDLSYN-HLERLNLNTLIP-KQLQY  153 (183)
Q Consensus        84 ~l~l~~~-~l~--~~~~~~~~~~~~L~~L~l~~~--~~~~--~~~-~~~~~~L~~l~l~~n-~l~~~~~~~~~~-~~l~~  153 (183)
                      ++++++| .++  .+.......++.|+.++++++  .++.  +.. ...+++|++|++++| .+++.....+.. ++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            7777665 232  111111112355666666654  2222  111 234566666766654 355433333322 56666


Q ss_pred             EEcCCC-CceeeCCCCcCCCcceeEEEE
Q psy13911        154 LDVSGN-PRLHVDPNHFKSYRSYVRVYI  180 (183)
Q Consensus       154 l~l~~n-~~~~~~~~~~~~~~~l~~l~l  180 (183)
                      |++++| .+++.....++++++|+.|++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            777664 355444445566666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-13  Score=94.99  Aligned_cols=156  Identities=23%  Similarity=0.296  Sum_probs=108.1

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCC-CCCC--CC-CCCCCCCCEEeeCCc-cccc--cCcc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNA-LTDI--GP-LNKCRQLNTLHVAYN-AITS--LPDN   74 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~--~~-~~~l~~L~~l~l~~~-~~~~--~~~~   74 (183)
                      +...+..|++|++|++.++.+.. ....+..+++|+.|++++|. ++..  .. ...+++|++|+++++ .+++  +...
T Consensus        63 l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            55678899999999999998775 34556778999999999864 5543  22 346889999999886 3432  1122


Q ss_pred             cccCCCCCcEEEecCCc--Cc--cCCCCCCCCCCCccEEEeeCC-cCCC--CCCccCCCcccEEeccCc-ccccccCCCC
Q psy13911         75 CISAWSEMEELVLSGNG--IS--SLPNTIPQSWPHLRVLRLHSN-HLTS--CPTLYLSSSLRVLDLSYN-HLERLNLNTL  146 (183)
Q Consensus        75 ~~~~~~~L~~l~l~~~~--l~--~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~L~~l~l~~n-~l~~~~~~~~  146 (183)
                      ....++.++.+++.++.  ++  .+.. +...+++|++|++++| .+++  +..+..+++|++|++++| .+++.....+
T Consensus       143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L  221 (284)
T d2astb2         143 VAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  221 (284)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             hcccccccchhhhcccccccccccccc-cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH
Confidence            12335689999998752  33  1211 2225788999999887 4653  345777889999999885 6766554444


Q ss_pred             CC-CCccEEEcCCC
Q psy13911        147 IP-KQLQYLDVSGN  159 (183)
Q Consensus       147 ~~-~~l~~l~l~~n  159 (183)
                      .. ++|++|++.++
T Consensus       222 ~~~~~L~~L~l~~~  235 (284)
T d2astb2         222 GEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             hcCCCCCEEeeeCC
Confidence            33 88999998876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.22  E-value=1.3e-09  Score=76.68  Aligned_cols=98  Identities=29%  Similarity=0.384  Sum_probs=79.9

Q ss_pred             CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911         11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   90 (183)
                      .+++.|+++++.++.+|+.   .++|++|++++|+++.++..  ..+|+.|++.+|.++.++.    -.+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh----hcccccccccccc
Confidence            4789999999999999864   46899999999999987542  5689999999998886653    1356999999999


Q ss_pred             cCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911         91 GISSLPNTIPQSWPHLRVLRLHSNHLTSC  119 (183)
Q Consensus        91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  119 (183)
                      .+..+|..  ..+++|+.+++.++.+...
T Consensus       109 ~l~~lp~~--~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         109 QLEKLPEL--QNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CCSSCCCC--TTCTTCCEEECCSSCCSCC
T ss_pred             ccccccch--hhhccceeecccccccccc
Confidence            99988753  3688999999998876643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=2e-13  Score=96.82  Aligned_cols=176  Identities=20%  Similarity=0.177  Sum_probs=99.8

Q ss_pred             HHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------CC---------CCCCCCCCEEeeC
Q psy13911          5 LFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------GP---------LNKCRQLNTLHVA   64 (183)
Q Consensus         5 ~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~---------~~~l~~L~~l~l~   64 (183)
                      +.+..+++|+.|++++|.+..     +...+...++|+.|++++|.+...      .+         ....+.|+.+.+.
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            445556666666666665543     123334455666666666654321      00         1234456666666


Q ss_pred             CccccccC----cccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCC------CCccCCCccc
Q psy13911         65 YNAITSLP----DNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSC------PTLYLSSSLR  129 (183)
Q Consensus        65 ~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~  129 (183)
                      ++.+....    ...+..+.+++.+++.+|.+..     +.......+++|+.|++++|.++..      ..+..+++|+
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            65554221    1123455678888888877652     1112223567788888888877542      1356677888


Q ss_pred             EEeccCcccccccCCCCC-------CCCccEEEcCCCCceeeC----CCCcC-CCcceeEEEE
Q psy13911        130 VLDLSYNHLERLNLNTLI-------PKQLQYLDVSGNPRLHVD----PNHFK-SYRSYVRVYI  180 (183)
Q Consensus       130 ~l~l~~n~l~~~~~~~~~-------~~~l~~l~l~~n~~~~~~----~~~~~-~~~~l~~l~l  180 (183)
                      +|++++|.+++.+...+.       ...+++|++++|.++...    ..++. +++.|+.|+|
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence            888888887765332221       156888888888775432    22222 4566777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=5.1e-12  Score=89.45  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=34.1

Q ss_pred             CCCccEEEeeCCcCCCC-------CCccCCCcccEEeccCcccccccCCCC----C-CCCccEEEcCCCCcee
Q psy13911        103 WPHLRVLRLHSNHLTSC-------PTLYLSSSLRVLDLSYNHLERLNLNTL----I-PKQLQYLDVSGNPRLH  163 (183)
Q Consensus       103 ~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~l~l~~n~l~~~~~~~~----~-~~~l~~l~l~~n~~~~  163 (183)
                      .+.++.+++++|.++..       ..+..++.|+.|++++|.+++.+...+    . .++|++|++++|.+.+
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            35566666666665531       134455667777777776654322111    1 1566777777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.9e-10  Score=82.59  Aligned_cols=157  Identities=27%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             hhcCCCCcEEEccCCcCCCcc-----ccccccccccEEEccCCCCCCC------CC-CCCCCCCCEEeeCCccccccCcc
Q psy13911          7 LQNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI------GP-LNKCRQLNTLHVAYNAITSLPDN   74 (183)
Q Consensus         7 ~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~------~~-~~~l~~L~~l~l~~~~~~~~~~~   74 (183)
                      ......++.+++++|.+...+     ..+...+.++.+++++|.+...      .. ....+.|+.+++.++.+......
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~  330 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  330 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh
Confidence            334555666666666554321     2233445566666666655432      00 12334667777776665533221


Q ss_pred             ----cccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCcccc
Q psy13911         75 ----CISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHLE  139 (183)
Q Consensus        75 ----~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l~  139 (183)
                          .+....+|++|++++|.++.     +...+....+.|+.|++++|.++...      .+..+++|++|++++|.++
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence                12334567777777776642     22222223455777777777766421      2344567777777777766


Q ss_pred             cccCCCCC------CCCccEEEcCCCCcee
Q psy13911        140 RLNLNTLI------PKQLQYLDVSGNPRLH  163 (183)
Q Consensus       140 ~~~~~~~~------~~~l~~l~l~~n~~~~  163 (183)
                      +.+...+.      ...|+.+++.+|.+..
T Consensus       411 ~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         411 DAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            54332221      1457777777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-08  Score=74.18  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             CCCcEEEccCCcCCCc--cccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccCccc----cc-
Q psy13911         11 SKLKVLNISKNCLKML--PSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLPDNC----IS-   77 (183)
Q Consensus        11 ~~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~----~~-   77 (183)
                      ..|+.|+++++.++..  ...+..++++++|++++|+++..      .++..+++|+.|++++|.+++.....    +. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3578999999999863  45667788999999999988753      34567889999999999886422111    22 


Q ss_pred             CCCCCcEEEecCCcCccCC----CCCCCCCCCccEEEeeCCcCCC
Q psy13911         78 AWSEMEELVLSGNGISSLP----NTIPQSWPHLRVLRLHSNHLTS  118 (183)
Q Consensus        78 ~~~~L~~l~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~  118 (183)
                      ...+|++|++++|.++...    ...+..+++|++|++++|.+..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            2357999999998886321    1222367889999999888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=4.8e-08  Score=61.33  Aligned_cols=63  Identities=27%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             cccccccEEEccCCCCCCCCC----CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911         31 NENRYLEKLYLTSNALTDIGP----LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS   93 (183)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~~~~----~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   93 (183)
                      ..++.|+.|++++|+++.+..    +..+++|+.|++++|.++.+.+-.......++.+++.+|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            345556666666665555421    234556666666666665544422333344566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.9e-08  Score=62.40  Aligned_cols=64  Identities=31%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             cCCCCCcEEEecCCcCccCCC--CCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCccccc
Q psy13911         77 SAWSEMEELVLSGNGISSLPN--TIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLER  140 (183)
Q Consensus        77 ~~~~~L~~l~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~  140 (183)
                      ..++.|+++++++|.++.++.  ..+..+++|+.|++++|.++.++.  ......++.+++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            345556666666665554432  111234555555555555555432  1112234555555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=7.7e-06  Score=51.20  Aligned_cols=112  Identities=18%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             HHHHhhcCCCCcEEEccCC-cCCC-----ccccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccc
Q psy13911          3 LELFLQNSSKLKVLNISKN-CLKM-----LPSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITS   70 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~   70 (183)
                      +.....+.+.|+.|+++++ .+..     +...+...+.|+.|++++|.+...      ..+...+.|+.|++++|.+..
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            3444557799999999874 4653     224466678899999999988754      234556889999999998874


Q ss_pred             cC----cccccCCCCCcEEEecCCcCccCCC-------CCCCCCCCccEEEeeCC
Q psy13911         71 LP----DNCISAWSEMEELVLSGNGISSLPN-------TIPQSWPHLRVLRLHSN  114 (183)
Q Consensus        71 ~~----~~~~~~~~~L~~l~l~~~~l~~~~~-------~~~~~~~~L~~L~l~~~  114 (183)
                      ..    ..++...++|++|++.++.+..+..       .+....+.|+.++++.+
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22    2346677899999999886553321       11113567888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=3.1e-06  Score=53.05  Aligned_cols=105  Identities=10%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             cccccccEEEccCC-CCCCC------CCCCCCCCCCEEeeCCccccccC----cccccCCCCCcEEEecCCcCcc-----
Q psy13911         31 NENRYLEKLYLTSN-ALTDI------GPLNKCRQLNTLHVAYNAITSLP----DNCISAWSEMEELVLSGNGISS-----   94 (183)
Q Consensus        31 ~~~~~L~~L~l~~~-~~~~~------~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~-----   94 (183)
                      .+.+.|+.|+++++ .++..      .++...+.|+.|++++|.+....    ...+...++|+++++++|.++.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999975 46543      35667889999999999887322    2335567889999999998872     


Q ss_pred             CCCCCCCCCCCccEEEeeCCcCCCCC---------CccCCCcccEEeccCc
Q psy13911         95 LPNTIPQSWPHLRVLRLHSNHLTSCP---------TLYLSSSLRVLDLSYN  136 (183)
Q Consensus        95 ~~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~L~~l~l~~n  136 (183)
                      +...+ ...+.|++|++.+|.+..+.         .+...++|+.++++.+
T Consensus        92 l~~aL-~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHH-HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22223 36688999999998766542         1344567777877655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=2.5e-05  Score=48.70  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             HHHhhcCCCCcEEEccCC-cCCC-----ccccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccc
Q psy13911          4 ELFLQNSSKLKVLNISKN-CLKM-----LPSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAI   68 (183)
Q Consensus         4 ~~~~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~   68 (183)
                      .....+.+.|++|++.+. .++.     +...+...+.|+.|++++|.++..      ..+...+.++.+++.++.+
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            334456677777777653 4442     123334455566666666655443      1222334444555444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00022  Score=44.23  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             HHHHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeC--Ccccc
Q psy13911          3 LELFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVA--YNAIT   69 (183)
Q Consensus         3 ~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~--~~~~~   69 (183)
                      +..++..+++|++|++++|.+..     +...+...+.++.+++++|.+...      .++...+.|+.+.+.  .|.+.
T Consensus        38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            56677899999999999999874     335566778999999999987664      456677888876664  45554


Q ss_pred             cc----CcccccCCCCCcEEEecCC
Q psy13911         70 SL----PDNCISAWSEMEELVLSGN   90 (183)
Q Consensus        70 ~~----~~~~~~~~~~L~~l~l~~~   90 (183)
                      +-    ....+...++++.+++..+
T Consensus       118 ~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         118 NNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            31    2223556777888877654