Psyllid ID: psy13967
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 379 | ||||||
| 270007946 | 385 | hypothetical protein TcasGA2_TC014693 [T | 0.947 | 0.932 | 0.536 | 1e-112 | |
| 189237821 | 395 | PREDICTED: similar to AGAP012144-PA [Tri | 0.949 | 0.911 | 0.535 | 1e-112 | |
| 307179776 | 385 | Endoplasmic reticulum-Golgi intermediate | 0.949 | 0.935 | 0.524 | 1e-109 | |
| 380016121 | 385 | PREDICTED: endoplasmic reticulum-Golgi i | 0.947 | 0.932 | 0.523 | 1e-107 | |
| 193627365 | 404 | PREDICTED: endoplasmic reticulum-Golgi i | 0.941 | 0.883 | 0.514 | 1e-107 | |
| 383864675 | 385 | PREDICTED: endoplasmic reticulum-Golgi i | 0.949 | 0.935 | 0.519 | 1e-107 | |
| 332024433 | 386 | Endoplasmic reticulum-Golgi intermediate | 0.949 | 0.932 | 0.512 | 1e-107 | |
| 307193219 | 386 | Endoplasmic reticulum-Golgi intermediate | 0.952 | 0.935 | 0.516 | 1e-106 | |
| 350404831 | 385 | PREDICTED: endoplasmic reticulum-Golgi i | 0.949 | 0.935 | 0.519 | 1e-106 | |
| 328786822 | 383 | PREDICTED: endoplasmic reticulum-Golgi i | 0.941 | 0.932 | 0.518 | 1e-105 |
| >gi|270007946|gb|EFA04394.1| hypothetical protein TcasGA2_TC014693 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/386 (53%), Positives = 261/386 (67%), Gaps = 27/386 (6%)
Query: 5 ERLKGLDAFTKPYEDFHEKTVYGGAVTIVCWLFISYLICVDVCDYFQVSTTEELFVDSSR 64
E+L+ DA+ K ED KT G VTI+ ++ L V++ DY + +EELFVD+SR
Sbjct: 6 EKLRRFDAYPKTLEDVRIKTYGGAVVTIISLTIMTLLFWVELVDYLTPNVSEELFVDTSR 65
Query: 65 GSKLPIHLDIVVPTISCDYLALDAVDSSGEQHLHVEHNIYKRRLDLDGKPIQEPQKEVVN 124
+ I+LDI+VPTISCD+LALDA+DSSGEQHL ++HNIYKRRLDL G+PI+EP+KE +
Sbjct: 66 SPSIQINLDIIVPTISCDFLALDAMDSSGEQHLQIDHNIYKRRLDLQGQPIEEPKKEDIT 125
Query: 125 AVKKKKVTTENGTTTTELEDPNKCGSCYGAETETRKCCNTCNEVKEAYRYKKWALPE-LD 183
K+K +TE T + +CGSCYGA + ++CCNTC +V+EAYR ++WA PE +
Sbjct: 126 I--KRKNSTEVATV-----NKTECGSCYGASFDPKRCCNTCEDVREAYRERRWAFPENPE 178
Query: 184 TIVQCKNEYSTEKLKNTFTEGCQIYGYLEVNRVSGSFHIAPGLSYSINHVHVHDIQPYTS 243
I QCK E +EKLK F +GCQIYG L VNRVSGSFHIAPG S+SINHVHVHD+QP++S
Sbjct: 179 NITQCKEERFSEKLKTAFAQGCQIYGSLTVNRVSGSFHIAPGKSFSINHVHVHDVQPFSS 238
Query: 244 AAFNTTHHIRHLSFGIKLQDDDERRKPLDGTVAKAEEGASMFNYYIKIIPTIYERLDGS- 302
FNTTH IRHLSFG + D + PL TV AEEGASMF Y+IKI+PT Y +LDG
Sbjct: 239 TEFNTTHKIRHLSFGASI--DSDTHNPLKDTVGLAEEGASMFQYHIKIVPTAYVKLDGQF 296
Query: 303 ---------------KLGGGDGGMPGIFFSYELSPLMVKITEKSKSLGHLWTKIMCNISG 347
L G+ GMPGIFF YELSPLMVK TE+S+S GH T + I G
Sbjct: 297 ISANQFSVTKHRRVISLMSGESGMPGIFFQYELSPLMVKYTEQSRSFGHFATNVCAIIGG 356
Query: 348 TYITFMLVDALLHSCVKKIS-KVEIG 372
Y L+D +L+ VK I K+E+G
Sbjct: 357 VYTVAGLIDTMLYHSVKLIQKKIELG 382
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189237821|ref|XP_974331.2| PREDICTED: similar to AGAP012144-PA [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|307179776|gb|EFN67966.1| Endoplasmic reticulum-Golgi intermediate compartment protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|380016121|ref|XP_003692037.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|193627365|ref|XP_001948436.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|383864675|ref|XP_003707803.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|332024433|gb|EGI64631.1| Endoplasmic reticulum-Golgi intermediate compartment protein 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|307193219|gb|EFN76110.1| Endoplasmic reticulum-Golgi intermediate compartment protein 3 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|350404831|ref|XP_003487234.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|328786822|ref|XP_393819.4| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 379 | ||||||
| MGI|MGI:1913616 | 383 | Ergic3 "ERGIC and golgi 3" [Mu | 0.952 | 0.942 | 0.395 | 2.8e-73 | |
| ZFIN|ZDB-GENE-040426-795 | 383 | ergic3 "ERGIC and golgi 3" [Da | 0.944 | 0.934 | 0.406 | 5.9e-73 | |
| UNIPROTKB|Q9Y282 | 383 | ERGIC3 "Endoplasmic reticulum- | 0.952 | 0.942 | 0.395 | 9.6e-73 | |
| UNIPROTKB|Q5EAE0 | 383 | ERGIC3 "Endoplasmic reticulum- | 0.952 | 0.942 | 0.392 | 4.1e-72 | |
| FB|FBgn0036489 | 373 | CG7011 [Drosophila melanogaste | 0.923 | 0.938 | 0.397 | 6.5e-67 | |
| DICTYBASE|DDB_G0292002 | 383 | ergic3 "endoplasmic reticulum- | 0.952 | 0.942 | 0.378 | 5.4e-63 | |
| TAIR|locus:2034330 | 489 | AT1G36050 "AT1G36050" [Arabido | 0.949 | 0.736 | 0.348 | 1.2e-58 | |
| TAIR|locus:2015056 | 386 | AT1G22200 "AT1G22200" [Arabido | 0.952 | 0.935 | 0.326 | 2.6e-54 | |
| WB|WBGene00010725 | 380 | erv-46 [Caenorhabditis elegans | 0.939 | 0.936 | 0.312 | 2.8e-50 | |
| ASPGD|ASPL0000037804 | 437 | AN2738 [Emericella nidulans (t | 0.749 | 0.649 | 0.365 | 4.7e-50 |
| MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 153/387 (39%), Positives = 218/387 (56%)
Query: 6 RLKGLDAFTKPYEDFHEKTVYGGAVTIVCWLFISYLICVDVCDYFQVSTTEELFVDSSRG 65
+LK DA+ K EDF KT G VTIV L + L ++ Y EL+VD SRG
Sbjct: 6 KLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRG 65
Query: 66 SKLPIHLDIVVPTISCDYLALDAVDSSGEQHLHVEHNIYKRRLDLDGKPIQEPQXXXXXX 125
KL I++D++ P + C YL++DA+D +GEQ L VEHN++K+RLD DG P+
Sbjct: 66 DKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSSEAERHELG 125
Query: 126 XXXXXXXXXXXXXXXXLEDPNKCGSCYGAETETRKCCNTCNEVKEAYRYKKWALPELDTI 185
DPN+C SCYGAE+E KCCN+C +V+EAYR + WA DTI
Sbjct: 126 KVEVTVFDPNSL------DPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPDTI 179
Query: 186 VQCKNEYSTEKLKNTFTEGCQIYGYLEVNRVSGSFHIAPGLSYSINHVHVHDIQPYTSAA 245
QC+ E ++K++ EGCQ+YG+LEVN+V+G+FH APG S+ +HVHVHD+Q +
Sbjct: 180 EQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDN 239
Query: 246 FNTTHHIRHLSFGIKLQDDDERRKPLDGTVAKAEEGASMFNYYIKIIPTIYERLDXXXXX 305
N TH+I+HLSFG +D PLD T A + + MF Y++K++PT+Y ++D
Sbjct: 240 INMTHYIKHLSFG---EDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLR 296
Query: 306 XXXXXXXX----------------IFFSYELSPLMVKITEKSKSLGHLWTKIMCNISGTY 349
+F YELSP+MVK+TEK +S H T + I G +
Sbjct: 297 TNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMF 356
Query: 350 ITFMLVDALLHSCVKKISK-VEIGGKT 375
L+D+L++ + I K +++G T
Sbjct: 357 TVAGLIDSLIYHSARAIQKKIDLGKTT 383
|
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| ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| FB|FBgn0036489 CG7011 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0292002 ergic3 "endoplasmic reticulum-golgi intermediate compartment protein 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2015056 AT1G22200 "AT1G22200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00010725 erv-46 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000037804 AN2738 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 379 | |||
| pfam07970 | 222 | pfam07970, COPIIcoated_ERV, Endoplasmic reticulum | 9e-80 | |
| pfam13850 | 105 | pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In | 2e-40 |
| >gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 9e-80
Identities = 97/225 (43%), Positives = 131/225 (58%), Gaps = 22/225 (9%)
Query: 151 CYGAETETRKCCNTCNEVKEAYRYKKWALPELDTIVQCKNEYSTEKLK--NTFTEGCQIY 208
CYGAE KCCNTC +V+EAY+ K WA P+L+ I QCK EY EKLK EGC++
Sbjct: 1 CYGAEDNNGKCCNTCEDVREAYKKKGWAFPDLENIEQCKREYV-EKLKAQKNSNEGCRVK 59
Query: 209 GYLEVNRVSGSFHIAPGLSYSINHVHVHDIQPYTSAAFNTTHHIRHLSFGIKLQDDDERR 268
G LEVNRV+G+FHIAPG S+ HVHD+ +T N +H I HLSFG +
Sbjct: 60 GTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFSHTINHLSFGEE--FPGGVT 117
Query: 269 KPLDGT--VAKAEEGASMFNYYIKIIPTIYERLDGSKL---------------GGGDGGM 311
PLDGT + ++G M++Y++K++PT YE L+G + GG GG+
Sbjct: 118 NPLDGTTKFVQTDKGYHMYSYFLKVVPTRYESLNGLIVETNQYSVTSHDRPVTGGSRGGV 177
Query: 312 PGIFFSYELSPLMVKITEKSKSLGHLWTKIMCNISGTYITFMLVD 356
PG+FF+Y+ SP+ V TE +S H T + I G + L+D
Sbjct: 178 PGVFFNYDFSPIKVINTEDRQSFSHFLTNLCAIIGGVFAVAGLID 222
|
This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi. Length = 222 |
| >gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 379 | |||
| KOG2667|consensus | 379 | 100.0 | ||
| PF07970 | 222 | COPIIcoated_ERV: Endoplasmic reticulum vesicle tra | 100.0 | |
| PF13850 | 96 | ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate | 99.98 |
| >KOG2667|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-101 Score=751.42 Aligned_cols=357 Identities=42% Similarity=0.755 Sum_probs=324.9
Q ss_pred CcccccCccCcCCCCCCCCceeeccccceehhHHHHHHHHHHHHhhccccccceEEEEEEcCCCCCeeeEEEeEEeCCCc
Q psy13967 1 MVFSERLKGLDAFTKPYEDFHEKTVYGGAVTIVCWLFISYLICVDVCDYFQVSTTEELFVDSSRGSKLPIHLDIVVPTIS 80 (379)
Q Consensus 1 m~~~~~lk~~D~F~K~~~d~~~~T~~GgivSii~~~i~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~l~In~dItfp~~p 80 (379)
|+.++.||+||||||++||++++|.+||++||+|.++|++||++|+..|+.+...+++.||.+++++|+||||||||+||
T Consensus 1 ~~~~~~lk~~Daf~K~~ed~~~~s~sGg~islis~l~i~~L~~~E~~~y~~~~~~~~~~vd~s~~e~l~in~DItfp~lp 80 (379)
T KOG2667|consen 1 MGILSKLKSFDAFPKTPEDYREKSLSGGLISLIAFLIILFLFFMELSQYLSVITSTELFVDDSRDEKLQINFDITFPALP 80 (379)
T ss_pred CchhhhhhhccccccchHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcceeEEEEeCCCCceeeeeeeEEeccCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeeecCCcccccccccEEEEeecCCCCccc-CcchhhhhhhcccceeccCCCccCCCCCCCCCCCCcCCcC---
Q psy13967 81 CDYLALDAVDSSGEQHLHVEHNIYKRRLDLDGKPIQ-EPQKEVVNAVKKKKVTTENGTTTTELEDPNKCGSCYGAET--- 156 (379)
Q Consensus 81 C~~l~vDv~D~~G~~~~~i~~~i~k~rld~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~Cyga~~--- 156 (379)
|++|+|||+|.+|+.++++.++|+|.|+|. +++. +..+++....+ .. -+ ...+.+|+.||+++.
T Consensus 81 C~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k-~~-------~p--~~~~~~c~~~~~~~~~~~ 148 (379)
T KOG2667|consen 81 CSILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHK-QT-------IP--TTDPILCGLCYGAEDFND 148 (379)
T ss_pred cceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccc-cc-------cC--CCCccchhhhhhhhcccc
Confidence 999999999999999999999999999999 4554 22233222211 11 11 113468999999987
Q ss_pred CCccccCchHHHHHHHHhcCCCCCCCcchhhhhccchhhhhcCCCCCCceEEEEEEEeeeeeeEEEecCCCcccCcceee
Q psy13967 157 ETRKCCNTCNEVKEAYRYKKWALPELDTIVQCKNEYSTEKLKNTFTEGCQIYGYLEVNRVSGSFHIAPGLSYSINHVHVH 236 (379)
Q Consensus 157 ~~~~cCntce~v~~ay~~~~~~~~~~~~~~qC~~~~~~~~~~~~~~egCrI~G~l~VnkV~GnfhI~~g~~~~~~~~h~h 236 (379)
...+|||+|++|++||+.++|++++.+.++||.++++.++.+.+.+|||||+|++.||||||||||+||++++..+.|.|
T Consensus 149 ~~~~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~h 228 (379)
T KOG2667|consen 149 GDIDCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVH 228 (379)
T ss_pred ccchhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccc
Confidence 57789999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccEEEeEeeeccCCCCCCcCCCCCCCceeeeccCceeEEEEEEEEEEeEEcCCCeee------------
Q psy13967 237 DIQPYTSAAFNTTHHIRHLSFGIKLQDDDERRKPLDGTVAKAEEGASMFNYYIKIIPTIYERLDGSKL------------ 304 (379)
Q Consensus 237 d~~~~~~~~~N~SH~I~~lsFG~~~p~~~~~~~PLdg~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~------------ 304 (379)
|.+.+ +.+||||+|||||||+.+| +..|||||+.++..++..+||||+|||||.|.+..+.++
T Consensus 229 d~~~~--~~~n~SH~InhLSFG~~~p---~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~ 303 (379)
T KOG2667|consen 229 DLSLL--DNLNFSHRINHLSFGEYIP---GIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEY 303 (379)
T ss_pred hhhhc--ccCCceEEEeeeccCCCCc---ccccCCCCccccccCCccceeeEEEEcceEEEeecCceecceeeeeeeeEE
Confidence 98765 7899999999999999999 999999999999999999999999999999997776543
Q ss_pred ---C-CCCCCCceEEEEEEccceEEEEEeeecchHHHHHhHhhhccceeehhHHHHHHHHHHhhhee-eeeccce
Q psy13967 305 ---G-GGDGGMPGIFFSYELSPLMVKITEKSKSLGHLWTKIMCNISGTYITFMLVDALLHSCVKKIS-KVEIGGK 374 (379)
Q Consensus 305 ---~-~~~~~~PgI~F~Yd~SPi~V~v~e~~~~~~~flt~lcAIiGGvftv~glid~~i~~~~~~i~-k~~~gk~ 374 (379)
+ .+..++|||||+||+|||+|+++|+|.||+||||||||||||+||||||||+++|+++++++ |.++||+
T Consensus 304 ~~~~~~~~~~~PGifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~~~gk~ 378 (379)
T KOG2667|consen 304 VLHSHRAKSGIPGIFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKIALGKY 378 (379)
T ss_pred eccccccccCCCeEEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcchhhhcc
Confidence 1 22348999999999999999999999999999999999999999999999999999999999 9999997
|
|
| >PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins | Back alignment and domain information |
|---|
| >PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 379 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 62/437 (14%), Positives = 108/437 (24%), Gaps = 148/437 (33%)
Query: 37 FISYLICVDVCDYF-QVSTTEE---LFVDSSRGSKLPIHLDI------------VVPTIS 80
F+ C DV D + + EE + + S V +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 81 CDY------LALDAVDSSGEQHLHVEHNIYKRRLDLDG-----------KPIQE------ 117
+Y + + S +++E + RL D +P +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 118 ---PQKEVV--------------NAVKKKKVTTENG------------TTTTELE----- 143
P K V+ + KV + + T LE
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 144 ----DPNKCGSCYGAETETRKCCNTCNEVKEAYR-------YKKWALPELDTIVQCKNEY 192
DPN + + + ++ R Y+ L L +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSKPYEN-CLLVLLNV------- 253
Query: 193 STEKLKNTFTEGCQIYGYLEVNRVSGSFHIAPGLSYSINHVHVHDIQPYTSAAFNTTHHI 252
K N F C+I L R + + H+ +
Sbjct: 254 QNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATTT--HISLDHHSM----TLTPDEVK 304
Query: 253 RHLSFGIKLQDDDERRK-----PL--DGTVAKAEEGASMFNYY--------IKIIPTIYE 297
L + + D R+ P +G + ++ + II +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 298 RLDGSKLGGGDGGMPGIFFSY--ELS--PLMVKITEKSKSLGHLWTKIMCNISGTYITFM 353
L+ P + LS P I L +W + M
Sbjct: 365 VLE-----------PAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDV------IKSDVM 405
Query: 354 LVDALLH--SCVKKISK 368
+V LH S V+K K
Sbjct: 406 VVVNKLHKYSLVEKQPK 422
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00