Psyllid ID: psy1396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Secondary Structure (PSIPRED)
ccccEEEEEEcccHHHccEEEEEEEccccEEEEccccEEEccccEEEEEEEEEEccEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccHcccEEEEEEcccccEEEccccccEEcccccEEEEEEEEEEEcccEEEEEcc
Coil and Loop (DISEMBL)
MDQNNYKVLSVTGDTLQNCTLELAtlgdlklverpqpvvlaphdfcnikanvkvastengiifgni
Flexible Loop (DISEMBL)
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKanvkvastengiifgni
Low Complexity Region (SEG)
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Disordered region (IsUnstruct)
*****YKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIF***
Disordered Region (DISOPRED)
*DQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Disordered Region (DISEMBL)
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Disordered Region (DISPRO)
**QNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
P45437	964	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.881	7e-25
Q29G21	965	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.881	8e-25
Q66HV4	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	5e-23
Q5ZIA5	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	5e-23
Q5R922	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	6e-23
P23514	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	6e-23
Q9JIF7	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	6e-23
P53618	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	6e-23
A0JN39	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	6e-23
D2SW95	953	Coatomer subunit beta OS=	yes	N/A	0.893	0.061	0.847	7e-23

>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2 SV=2

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.
Drosophila melanogaster (taxid: 7227)

>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura GN=betaCop PE=3 SV=2

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 759 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 817

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Danio rerio (taxid: 7955)

>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Gallus gallus (taxid: 9031)

>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Pongo abelii (taxid: 9601)

>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in the axonal compartment of dorsal root ganglion (DRG) cells. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Rattus norvegicus (taxid: 10116)

>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1 (By similarity). Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in cortical neurons. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Mus musculus (taxid: 10090)

>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis (By similarity). Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Homo sapiens (taxid: 9606)

>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Bos taurus (taxid: 9913)

>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
242005067	966	Coatomer subunit beta, putative [Pedicul	0.893	0.061	0.898	7e-24
193692994	960	PREDICTED: coatomer subunit beta-like [A	0.893	0.061	0.881	1e-23
220942592	965	betaCop-PA [synthetic construct]	0.893	0.061	0.881	3e-23
17647193	964	beta-coatomer protein [Drosophila melano	0.893	0.061	0.881	3e-23
195039810	970	GH12352 [Drosophila grimshawi] gi|193900	0.893	0.060	0.881	3e-23
195345433	964	GM22820 [Drosophila sechellia] gi|194134	0.893	0.061	0.881	3e-23
472343	962	bcop [Drosophila melanogaster]	0.893	0.061	0.881	3e-23
195130843	959	GI15599 [Drosophila mojavensis] gi|19390	0.893	0.061	0.881	3e-23
195400901	960	GJ15202 [Drosophila virilis] gi|19414170	0.893	0.061	0.881	3e-23
195432256	959	GK19864 [Drosophila willistoni] gi|19416	0.893	0.061	0.881	3e-23

>gi|242005067|ref|XP_002423396.1| Coatomer subunit beta, putative [Pediculus humanus corporis] gi|212506440|gb|EEB10658.1| Coatomer subunit beta, putative [Pediculus humanus corporis]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 58/59 (98%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ TGDTLQNCTLELATLGDLKLVE+PQPVVLAPHDFCNIKA+VKVASTENGIIFGNI
Sbjct: 756 IVNQTGDTLQNCTLELATLGDLKLVEKPQPVVLAPHDFCNIKASVKVASTENGIIFGNI 814

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193692994|ref|XP_001949960.1| PREDICTED: coatomer subunit beta-like [Acyrthosiphon pisum]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 58/59 (98%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ TGDTLQNCTLELAT+GDLKLVE+PQPVVLAPHDFCNIKA+VKVASTENGIIFGNI
Sbjct: 751 IVNQTGDTLQNCTLELATMGDLKLVEKPQPVVLAPHDFCNIKASVKVASTENGIIFGNI 809

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|220942592|gb|ACL83839.1| betaCop-PA [synthetic construct]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|17647193|ref|NP_523400.1| beta-coatomer protein [Drosophila melanogaster] gi|32172433|sp|P45437.2|COPB_DROME RecName: Full=Coatomer subunit beta; AltName: Full=Beta-coat protein; Short=Beta-COP gi|5052602|gb|AAD38631.1|AF145656_1 BcDNA.GH09317 [Drosophila melanogaster] gi|22832491|gb|AAF48830.2| beta-coatomer protein [Drosophila melanogaster]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195039810|ref|XP_001990951.1| GH12352 [Drosophila grimshawi] gi|193900709|gb|EDV99575.1| GH12352 [Drosophila grimshawi]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 764 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 822

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345433|ref|XP_002039273.1| GM22820 [Drosophila sechellia] gi|194134499|gb|EDW56015.1| GM22820 [Drosophila sechellia]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|472343|gb|AAA21090.1| bcop [Drosophila melanogaster]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 757 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 815

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130843|ref|XP_002009860.1| GI15599 [Drosophila mojavensis] gi|193908310|gb|EDW07177.1| GI15599 [Drosophila mojavensis]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 753 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 811

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400901|ref|XP_002059054.1| GJ15202 [Drosophila virilis] gi|194141706|gb|EDW58123.1| GJ15202 [Drosophila virilis]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 754 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 812

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432256|ref|XP_002064142.1| GK19864 [Drosophila willistoni] gi|194160227|gb|EDW75128.1| GK19864 [Drosophila willistoni]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 753 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 811

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0008635	964	betaCop "beta-coatomer protein	0.893	0.061	0.881	1.2e-22
UNIPROTKB|Q5ZIA5	953	COPB1 "Coatomer subunit beta"	0.893	0.061	0.847	4.8e-21
UNIPROTKB|A0JN39	953	COPB1 "Coatomer subunit beta"	0.893	0.061	0.847	4.8e-21
UNIPROTKB|E2R9A2	953	COPB1 "Coatomer subunit beta"	0.893	0.061	0.847	4.8e-21
UNIPROTKB|P53618	953	COPB1 "Coatomer subunit beta"	0.893	0.061	0.847	4.8e-21
UNIPROTKB|D2SW95	953	COPB1 "Coatomer subunit beta"	0.893	0.061	0.847	4.8e-21
MGI|MGI:1917599	953	Copb1 "coatomer protein comple	0.893	0.061	0.847	4.8e-21
RGD|620861	953	Copb1 "coatomer protein comple	0.893	0.061	0.847	4.8e-21
ZFIN|ZDB-GENE-030219-38	953	copb1 "coatomer protein comple	0.893	0.061	0.847	4.8e-21
WB|WBGene00021292	971	copb-1 [Caenorhabditis elegans	0.893	0.060	0.694	4.1e-16

FB|FBgn0008635 betaCop "beta-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             +++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct:   758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|Q5ZIA5 COPB1 "Coatomer subunit beta" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A0JN39 COPB1 "Coatomer subunit beta" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2R9A2 COPB1 "Coatomer subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53618 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005798 "Golgi-associated vesicle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|D2SW95 COPB1 "Coatomer subunit beta" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1917599 Copb1 "coatomer protein complex, subunit beta 1" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005798 "Golgi-associated vesicle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|620861 Copb1 "coatomer protein complex, subunit beta 1" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISO

ZFIN|ZDB-GENE-030219-38 copb1 "coatomer protein complex, subunit beta 1" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct:   745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803

GO:0030117 "membrane coat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

WB|WBGene00021292 copb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 213 (80.0 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query:     8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
             +++ T DTLQN +LELAT+GDLKLV++P PV LAP+DF NIKA VKVASTENG+IF  I
Sbjct:   754 IVNQTSDTLQNVSLELATVGDLKLVDKPTPVTLAPNDFSNIKATVKVASTENGVIFSTI 812

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45437	COPB_DROME	No assigned EC number	0.8813	0.8939	0.0612	yes	N/A
D2SW95	COPB_PIG	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
Q5ZIA5	COPB_CHICK	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
Q29G21	COPB_DROPS	No assigned EC number	0.8813	0.8939	0.0611	yes	N/A
Q66HV4	COPB_DANRE	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
Q9UUF7	COPB_SCHPO	No assigned EC number	0.6181	0.8333	0.0585	yes	N/A
Q9SV21	COPB1_ARATH	No assigned EC number	0.6610	0.8939	0.0622	yes	N/A
Q9SV20	COPB2_ARATH	No assigned EC number	0.6610	0.8939	0.0622	yes	N/A
Q23924	COPB_DICDI	No assigned EC number	0.5593	0.8939	0.0646	yes	N/A
Q53PC7	COPB1_ORYSJ	No assigned EC number	0.6271	0.8939	0.0619	yes	N/A
Q9JIF7	COPB_MOUSE	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
Q5R922	COPB_PONAB	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
A0JN39	COPB_BOVIN	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
P53618	COPB_HUMAN	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A
P23514	COPB_RAT	No assigned EC number	0.8474	0.8939	0.0619	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
pfam07718	279	pfam07718, Coatamer_beta_C, Coatamer beta C-termin	2e-27
COG5096	757	COG5096, COG5096, Vesicle coat complex, various su	0.001

>gnl|CDD|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region

 Score = 99.0 bits (247), Expect = 2e-27
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 8   VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
           V++ T DTLQN TLELATLGDLK+VE+P P  LAP  F + +A VKV+STENG+IFGNI
Sbjct: 81  VVNQTKDTLQNATLELATLGDLKIVEQPTPFTLAPESFKSFQATVKVSSTENGVIFGNI 139

This family is found at the N-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal pfam01602 domain. Length = 279

>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 11  VTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
            T + L+N  L+  TLG L  +       L        +  VK  + E G I GNI
Sbjct: 593 QTPELLENLRLDF-TLGTLSTIPLKPIFNLRKGAVVLQQVTVKKPNAELGFITGNI 647

Length = 757

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PF07718	140	Coatamer_beta_C: Coatomer beta C-terminal region;	100.0
KOG1058|consensus	948		99.95
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.53
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	95.59
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	94.91
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	94.54
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	93.87
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	91.92
smart00809	104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	91.24
PF14796	145	AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit	88.78
COG1470	513	Predicted membrane protein [Function unknown]	87.65
PF02883	115	Alpha_adaptinC2: Adaptin C-terminal domain; InterP	86.79
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	86.58
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	85.61

>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=8.4e-35  Score=198.08  Aligned_cols=62  Identities=66%  Similarity=1.009  Sum_probs=61.2

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEeceeceEEEEeC
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI   66 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsStetGvIfG~I   66 (66)
                      |+|++|||++|||||+|||+|+||||+|||||++||+||+|+++||+|||||||+|+|||||
T Consensus        74 DvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I  135 (140)
T PF07718_consen   74 DVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNI  135 (140)
T ss_pred             EEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999997

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat

>KOG1058|consensus

Probab=99.95  E-value=2.6e-28  Score=199.53  Aligned_cols=62  Identities=71%  Similarity=1.031  Sum_probs=61.2

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEeceeceEEEEeC
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI   66 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsStetGvIfG~I   66 (66)
                      |+|+||||++||||+++||+|+||||+||||++++|+||+|+++||+|||+|||+|+|||||
T Consensus       739 DvL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsStenGvIfGnI  800 (948)
T KOG1058|consen  739 DVLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNI  800 (948)
T ss_pred             EEEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999997

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.53  E-value=1.9e-08  Score=82.72  Aligned_cols=61  Identities=28%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEeceeceEEEEeC
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI   66 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsStetGvIfG~I   66 (66)
                      ++++.|+|.++|+|+.+.+ |+|+++.+..+++.++.||+++.-+.++|+++++.|.||||+
T Consensus       587 ~~~~~~~t~~~l~nl~~~~-t~~~l~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~i~gn~  647 (757)
T COG5096         587 SALLTNQTPELLENLRLDF-TLGTLSTIPLKPIFNLRKGAVVLQQVTVKKPNAELGFITGNI  647 (757)
T ss_pred             hhhccccCHHHHHhhhccc-cccceeccCCCCcccCCCCceeeeeeeeeccchhhhhhccCc
Confidence            4678999999999999999 999999999999999999999999999999999999999986

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=95.59  E-value=0.092  Score=32.96  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEecee
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTE   58 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsSte   58 (66)
                      .+-|.|+|++..+ ++|++...-++++......+.|+|++...+...|++...+
T Consensus        36 ~lkl~Nkt~~~~~-~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~   88 (118)
T PF11614_consen   36 TLKLTNKTNQPRT-YTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA   88 (118)
T ss_dssp             EEEEEE-SSS-EE-EEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred             EEEEEECCCCCEE-EEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence            4678898888765 7777776669999666689999999999999999986544

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=94.91  E-value=0.036  Score=36.29  Aligned_cols=36  Identities=33%  Similarity=0.599  Sum_probs=31.3

Q ss_pred             EecCCCceEeCCCCeEEEEEEEEEece-eceEEEEeC
Q psy1396          31 LVERPQPVVLAPHDFCNIKANVKVAST-ENGIIFGNI   66 (66)
Q Consensus        31 lverpq~~tL~P~~~~~i~a~iKVsSt-etGvIfG~I   66 (66)
                      ++..|..++|+|++++.+..+||+-.. -.|+|.|-|
T Consensus        80 ~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi  116 (121)
T PF06030_consen   80 LVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGI  116 (121)
T ss_pred             hccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeE
Confidence            577788899999999999999999665 789999864

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=94.54  E-value=0.17  Score=29.80  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCce-EeCCCCeEEEEEEEEEec-eece
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPV-VLAPHDFCNIKANVKVAS-TENG   60 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~-tL~P~~~~~i~a~iKVsS-tetG   60 (66)
                      .+-+.|.....+.|+.++|..--+..+--.|..+ .|.|+++..+...|++.+ ++.|
T Consensus        10 ~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G   67 (78)
T PF10633_consen   10 TLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPG   67 (78)
T ss_dssp             EEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SE
T ss_pred             EEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCc
Confidence            4678899999999999999766666644455544 699999999999999963 3444

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.87  E-value=0.11  Score=32.34  Aligned_cols=37  Identities=14%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             EEecCCCceEeCCCCeEEEEEEEEEec-ee---ceEEEEeC
Q psy1396          30 KLVERPQPVVLAPHDFCNIKANVKVAS-TE---NGIIFGNI   66 (66)
Q Consensus        30 klverpq~~tL~P~~~~~i~a~iKVsS-te---tGvIfG~I   66 (66)
                      .+...|..+|++|++++.+..+|.+.+ .+   ..++-|+|
T Consensus        56 ~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG~I   96 (112)
T PF06280_consen   56 TVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNGPFYEGFI   96 (112)
T ss_dssp             EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEEEE
T ss_pred             eEEeCCCeEEECCCCEEEEEEEEEehhcCCcccCCEEEEEE
Confidence            456677799999999999999999955 44   47777775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=91.92  E-value=0.82  Score=28.07  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             eEEEEecCcccccceEEEE-----EecCCeE--EecCCCceEeCCCCeEEEEEEEE
Q psy1396           5 NYKVLSVTGDTLQNCTLEL-----ATLGDLK--LVERPQPVVLAPHDFCNIKANVK   53 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vEl-----at~GdLk--lverpq~~tL~P~~~~~i~a~iK   53 (66)
                      .+.+.|.+++.|+|+++-|     .-.|-++  .-.+....+|+|++...++..|.
T Consensus        20 ~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~   75 (107)
T PF00927_consen   20 SVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT   75 (107)
T ss_dssp             EEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred             EEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence            3578999999999988888     4445553  66677788999999998877664

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain

Probab=91.24  E-value=1.4  Score=26.44  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCce-EeCCCCeEEEEEEEEEe
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPV-VLAPHDFCNIKANVKVA   55 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~-tL~P~~~~~i~a~iKVs   55 (66)
                      .+++.|.+...+.|+.++++.--.+++--.|+.- +|+|++.  ++-.+++.
T Consensus        23 ~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~--i~q~~~i~   72 (104)
T smart00809       23 TLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQ--ITQVLKVE   72 (104)
T ss_pred             EEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCC--EEEEEEEE
Confidence            4678899999999999999988788887777744 6999875  44444443

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.

>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal

Probab=88.78  E-value=1.3  Score=30.37  Aligned_cols=50  Identities=10%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             eEEEEecCcccccceEEEEEe-cCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396           5 NYKVLSVTGDTLQNCTLELAT-LGDLKLVERPQPVVLAPHDFCNIKANVKV   54 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat-~GdLklverpq~~tL~P~~~~~i~a~iKV   54 (66)
                      ++.+.|.+.+.+.||+|.=-. .+.+++-|=|+.=.|+|+++.....-|-+
T Consensus        90 ql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF  140 (145)
T PF14796_consen   90 QLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGIDF  140 (145)
T ss_pred             EEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence            678999999999999998776 66899999999989999998776555444

>COG1470 Predicted membrane protein [Function unknown]

Probab=87.65  E-value=1.3  Score=36.14  Aligned_cols=50  Identities=12%  Similarity=0.222  Sum_probs=40.7

Q ss_pred             eEEEEecCcccccceEEEE-EecCCeEEecCCCceE-eCCCCeEEEEEEEEEe
Q psy1396           5 NYKVLSVTGDTLQNCTLEL-ATLGDLKLVERPQPVV-LAPHDFCNIKANVKVA   55 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vEl-at~GdLklverpq~~t-L~P~~~~~i~a~iKVs   55 (66)
                      .+.|.|.-+.+|.||.+++ .++| ..+=-.|..+- |.|+++..+.++|||-
T Consensus       402 ~i~I~NsGna~LtdIkl~v~~Pqg-Wei~Vd~~~I~sL~pge~~tV~ltI~vP  453 (513)
T COG1470         402 RISIENSGNAPLTDIKLTVNGPQG-WEIEVDESTIPSLEPGESKTVSLTITVP  453 (513)
T ss_pred             EEEEEecCCCccceeeEEecCCcc-ceEEECcccccccCCCCcceEEEEEEcC
Confidence            4789999999999999999 7777 54433444444 9999999999999994

>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.79  E-value=4  Score=25.05  Aligned_cols=50  Identities=14%  Similarity=0.182  Sum_probs=35.7

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCC-ceEeCCCCeEEEEEEEEE
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQ-PVVLAPHDFCNIKANVKV   54 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq-~~tL~P~~~~~i~a~iKV   54 (66)
                      .+.+.|++...+.|++++++.--.+++-=.|+ .-+|+|++...-...|..
T Consensus        29 ~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~   79 (115)
T PF02883_consen   29 KLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN   79 (115)
T ss_dssp             EEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred             EEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence            47889999999999999998888888776666 678999666555544444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=86.58  E-value=3.9  Score=23.54  Aligned_cols=48  Identities=17%  Similarity=0.052  Sum_probs=34.8

Q ss_pred             EEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396           6 YKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVA   55 (66)
Q Consensus         6 ~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVs   55 (66)
                      +.|.|+-.....++.++|+--|...  .....-.|+|++...+..+++..
T Consensus        25 ~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i~~L~~g~~~~v~~~~~~~   72 (101)
T PF07705_consen   25 VTVKNNGTADAENVTVRLYLDGNSV--STVTIPSLAPGESETVTFTWTPP   72 (101)
T ss_dssp             EEEEE-SSS-BEEEEEEEEETTEEE--EEEEESEB-TTEEEEEEEEEE-S
T ss_pred             EEEEECCCCCCCCEEEEEEECCcee--ccEEECCcCCCcEEEEEEEEEeC
Confidence            5688998888999999998877665  22223479999999998888887

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=85.61  E-value=4.8  Score=31.62  Aligned_cols=50  Identities=14%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVA   55 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVs   55 (66)
                      .+.|.|+|++. +-.++++..+-++++.-.++++.++|++...+...+.+.
T Consensus       351 ~~~i~Nk~~~~-~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~  400 (434)
T TIGR02745       351 TLKILNKTEQP-HEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP  400 (434)
T ss_pred             EEEEEECCCCC-EEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence            45678888876 556666666667776433348999999998887777664

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
2r39_A	118	FIXG-related protein; structural GE PSI-2, protein	96.35
3hs8_A	273	Adaptor protein complex AP-2, alpha 2 subunit; ada	93.87
1kyf_A	247	Alpha-adaptin C; protein-peptide complex, endocyto	91.53

>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}

Probab=96.35  E-value=0.023  Score=35.16  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=41.9

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVAS   56 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsS   56 (66)
                      .+-|+|.|.++ |..+|++.-++++++.. |+.+.++|++...+...|.+..
T Consensus        36 tlki~Nkt~~~-~~~~l~v~g~~~l~~~g-~~~i~v~~g~~~~~~v~v~~~~   85 (118)
T 2r39_A           36 TLKVINKTQQV-QEYNLDVKGLNDVSWYG-KQTIQVEPGEVLNLPMSLGADP   85 (118)
T ss_dssp             EEEEEECSSSC-EEEEEEEESCSSCEEES-CCEEEECTTCEEEEEEEEEECG
T ss_pred             EEEEEECCCCC-EEEEEEEeCCcccEEeC-CCcEEECCCCEEEEEEEEEECh
Confidence            46789999999 78888888777799886 4579999999999988887743

>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}

Probab=93.87  E-value=0.093  Score=37.44  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=42.8

Q ss_pred             EEEEecCcccccceEEEEEecC----CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396           6 YKVLSVTGDTLQNCTLELATLG----DLKLVERPQPVVLAPHDFCNIKANVKVA   55 (66)
Q Consensus         6 ~llvNqT~~tLQNl~vElat~G----dLklverpq~~tL~P~~~~~i~a~iKVs   55 (66)
                      +++.|+|...|+|+++++....    .|++-.+|.+-+++|++.......+++.
T Consensus        74 L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~  127 (273)
T 3hs8_A           74 IFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECI  127 (273)
T ss_dssp             EEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEEC
T ss_pred             EEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEc
Confidence            6889999999999999998766    4787778888899999998888777764

>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A

Probab=91.53  E-value=0.41  Score=33.26  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             EEEEecCcccccceEEEEEecC----CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396           6 YKVLSVTGDTLQNCTLELATLG----DLKLVERPQPVVLAPHDFCNIKANVKVA   55 (66)
Q Consensus         6 ~llvNqT~~tLQNl~vElat~G----dLklverpq~~tL~P~~~~~i~a~iKVs   55 (66)
                      +++-|.|+..|+|+++++..-+    .|++--+|.+-+++|+++......+...
T Consensus        48 l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v~~~  101 (247)
T 1kyf_A           48 IFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECI  101 (247)
T ss_dssp             EEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEEC
T ss_pred             EEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEEEEc
Confidence            6788999999999999997754    4888778888889999999888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	95.45
d1kyfa1	133	Alpha-adaptin AP2 ear domain, N-terminal subdomain	91.79
d2vzsa3	103	Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato	87.45
d2je8a3	105	Beta-mannosidase, domains 2, 4 and 5 {Bacteroides	85.62
d1e42a1	120	Beta2-adaptin AP2 ear domain, N-terminal subdomain	84.86

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=95.45  E-value=0.014  Score=34.68  Aligned_cols=54  Identities=19%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEe-ceece
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVA-STENG   60 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVs-StetG   60 (66)
                      .+.+.|+.+..+.|+.+.+..--+-++  .|....|+|+++..+...|++. +++.|
T Consensus        22 ~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L~pG~s~~~~~~Vt~p~~a~~G   76 (103)
T d1w8oa1          22 PVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPLMPGRQAKGQVTITVPAGTTPG   76 (103)
T ss_dssp             EEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCBCTTCEEEEEEEEECCTTCCCE
T ss_pred             EEEEEeCCCCceeeeeEEEcCCCCccc--cCcceeeCCCCcEEEEEEEECCCCCCCc
Confidence            367899999999999999966556665  4666779999999999999995 34444

>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Alpha-adaptin ear subdomain-like
domain: Alpha-adaptin AP2 ear domain, N-terminal subdomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.79  E-value=0.22  Score=30.27  Aligned_cols=51  Identities=18%  Similarity=0.105  Sum_probs=42.6

Q ss_pred             EEEEecCcccccceEEEEEecC----CeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396           6 YKVLSVTGDTLQNCTLELATLG----DLKLVERPQPVVLAPHDFCNIKANVKVAS   56 (66)
Q Consensus         6 ~llvNqT~~tLQNl~vElat~G----dLklverpq~~tL~P~~~~~i~a~iKVsS   56 (66)
                      +++.|+|+..++|+++.+..-+    .|++-.+|-+-++.|++.......|....
T Consensus        48 l~~gNKt~~~l~~f~~~i~~~~~~~~~l~i~~~~~~~~I~~~~Q~qq~i~i~~~~  102 (133)
T d1kyfa1          48 IFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECIS  102 (133)
T ss_dssp             EEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEECS
T ss_pred             EEEEcCCCcccccEEEEEecCCCCCccEEEecccCCCeECCCcEEEEEEEEEEec
Confidence            7899999999999999987654    47888888778899999998888777644

>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: Exochitosanase CsxA, domains 2, 4 and 5
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=87.45  E-value=0.73  Score=26.92  Aligned_cols=42  Identities=12%  Similarity=0.093  Sum_probs=28.3

Q ss_pred             CcceEEEEecCcccccceEEEE--EecCCeEEecCCCceEeCCC
Q psy1396           2 DQNNYKVLSVTGDTLQNCTLEL--ATLGDLKLVERPQPVVLAPH   43 (66)
Q Consensus         2 ~~~~~llvNqT~~tLQNl~vEl--at~GdLklverpq~~tL~P~   43 (66)
                      +.+.+.++|.|.+.+.+++++.  +-+-.-.+-+|-...--.|.
T Consensus         9 ~~~~V~VVN~t~~~~~~~~v~a~v~Dl~Gk~~~~~~~~~~~~~~   52 (103)
T d2vzsa3           9 DNRSVVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGA   52 (103)
T ss_dssp             TTCEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEEEEEEECS
T ss_pred             CCCEEEEEECCCcccCCeEEEEEEEeCCCCEEEEEEEEEEEcCC
Confidence            4578999999999999998855  55444455555444333333

>d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: Beta-mannosidase, domains 2, 4 and 5
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=85.62  E-value=1.1  Score=25.51  Aligned_cols=48  Identities=10%  Similarity=0.117  Sum_probs=38.5

Q ss_pred             CcceEEEEecCcccccc--eEEEEEecCCeEEecCC--CceEeCCCCeEEEE
Q psy1396           2 DQNNYKVLSVTGDTLQN--CTLELATLGDLKLVERP--QPVVLAPHDFCNIK   49 (66)
Q Consensus         2 ~~~~~llvNqT~~tLQN--l~vElat~GdLklverp--q~~tL~P~~~~~i~   49 (66)
                      |.=++++||-.-++..+  +.+++....+-.+.++.  ..+++.|+.+..+.
T Consensus        10 d~l~iyvVsD~l~~~~~~~l~v~l~df~G~~l~~~~~~~~i~v~ansS~~v~   61 (105)
T d2je8a3          10 DSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVY   61 (105)
T ss_dssp             TEEEEEEEECCSSCEEEEEEEEEEEETTSCEEEEEEEEEEEEECTTEEEEEE
T ss_pred             CEEEEEEEeCCCCcccCcEEEEEEEEcCCcEEeeeeeeeeEEECCCceEEEE
Confidence            34468999999888865  77888999999998874  47899999987665

>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Alpha-adaptin ear subdomain-like
domain: Beta2-adaptin AP2 ear domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.86  E-value=1.2  Score=27.16  Aligned_cols=52  Identities=4%  Similarity=0.051  Sum_probs=39.9

Q ss_pred             eEEEEecCcccccceEEEEEecC-CeEEecCCCc-eEeCCCCeEEEEEEEEEec
Q psy1396           5 NYKVLSVTGDTLQNCTLELATLG-DLKLVERPQP-VVLAPHDFCNIKANVKVAS   56 (66)
Q Consensus         5 ~~llvNqT~~tLQNl~vElat~G-dLklverpq~-~tL~P~~~~~i~a~iKVsS   56 (66)
                      +|.+.|++...+++..|.|-... .|......+. -.|.|+++..+...++.+.
T Consensus        35 ~l~itN~s~~~ls~faIQfNKNsFGL~P~~~l~~p~~l~pgqS~~~~lpl~~~~   88 (120)
T d1e42a1          35 EMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLG   88 (120)
T ss_dssp             EEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEESCS
T ss_pred             EEEEecCCCCccchheEEEcccccccccCCcccCCCccCCCCEEEEEEEEecCC
Confidence            67889999999999999997766 6666444442 3599999988877776643