Psyllid ID: psy1401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHcHHHHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
MDMEKYLLERIKVggktsnfgnavslerqkTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKkdsyelryfq
Flexible Loop (DISEMBL)
MDMEKYLLERikvggktsnfgnavslerqktkviltadvafsKRYLKYLTkkylkknnlrdwlrvvankkdsyelryfq
Low Complexity Region (SEG)
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSkrylkyltkkylkknnlrDWLRVVANKKDSYELRYFQ
Disordered region (IsUnstruct)
*****YLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYE*****
Disordered Region (DISOPRED)
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ
Disordered Region (DISEMBL)
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ
Disordered Region (DISPRO)
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
P52819	130	60S ribosomal protein L22	yes	N/A	0.987	0.6	0.607	4e-20
Q09668	117	60S ribosomal protein L22	yes	N/A	0.974	0.658	0.589	2e-19
Q54GK6	116	60S ribosomal protein L22	yes	N/A	0.962	0.655	0.578	9e-19
Q90YU6	128	60S ribosomal protein L22	N/A	N/A	0.987	0.609	0.708	1e-18
Q54JE3	116	60S ribosomal protein L22	yes	N/A	0.962	0.655	0.565	2e-18
P35268	128	60S ribosomal protein L22	yes	N/A	0.987	0.609	0.696	6e-18
P67985	128	60S ribosomal protein L22	yes	N/A	0.987	0.609	0.696	6e-18
P67984	128	60S ribosomal protein L22	no	N/A	0.987	0.609	0.696	6e-18
Q4R5I3	128	60S ribosomal protein L22	N/A	N/A	0.987	0.609	0.696	6e-18
Q98TF8	128	60S ribosomal protein L22	yes	N/A	0.987	0.609	0.696	6e-18

>sp|P52819|RL22_CAEEL 60S ribosomal protein L22 OS=Caenorhabditis elegans GN=rpl-22 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFG-NAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           D+E +L E+IKV GKT +   N V +E  K+KV + ++V FSKRYLKYLTKKYLK+N+LR
Sbjct: 40  DLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLR 99

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVA  K++YE+RYF 
Sbjct: 100 DWLRVVAVNKNTYEVRYFH 118

Caenorhabditis elegans (taxid: 6239)

>sp|Q09668|RL22_SCHPO 60S ribosomal protein L22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl22 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 3   MEKYLLERIKVGGKTSNFGNAVSLERQ-KTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
            EKYL++RIKV GKT N G++V + R+  +K+ + A + FS RYLKYLTKK+LKK++LRD
Sbjct: 30  FEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRD 89

Query: 62  WLRVVANKKDSYELRYFQ 79
           WLRVV+ KK  YELRY+ 
Sbjct: 90  WLRVVSTKKGVYELRYYN 107

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54GK6|RL222_DICDI 60S ribosomal protein L22 2 OS=Dictyostelium discoideum GN=rpl22a PE=3 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 57/76 (75%)

Query: 3   MEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDW 62
            EKYL +RIKV  K SN G+ V + + K+K+I+   + FSKRYLKYLTKK+LK   +RD+
Sbjct: 32  FEKYLHDRIKVDNKVSNLGSNVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDF 91

Query: 63  LRVVANKKDSYELRYF 78
           LRVVA  K++YELRYF
Sbjct: 92  LRVVATTKNTYELRYF 107

Dictyostelium discoideum (taxid: 44689)

>sp|Q90YU6|RL22_ICTPU 60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V S+ER K+K+ +T+D+ FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANTKESYELRYFQ 116

Ictalurus punctatus (taxid: 7998)

>sp|Q54JE3|RL221_DICDI 60S ribosomal protein L22 1 OS=Dictyostelium discoideum GN=rpl22 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 56/76 (73%)

Query: 3   MEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDW 62
            EKYL +RIKV  K  N G+ V + + K+K+I+   + FSKRYLKYLTKK+LK   +RD+
Sbjct: 32  FEKYLHDRIKVDNKVGNLGSTVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDF 91

Query: 63  LRVVANKKDSYELRYF 78
           LRVVA  K++YELRYF
Sbjct: 92  LRVVATTKNTYELRYF 107

Dictyostelium discoideum (taxid: 44689)

>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANSKESYELRYFQ 116

Homo sapiens (taxid: 9606)

>sp|P67985|RL22_PIG 60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANSKESYELRYFQ 116

Sus scrofa (taxid: 9823)

>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANSKESYELRYFQ 116

Mus musculus (taxid: 10090)

>sp|Q4R5I3|RL22_MACFA 60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANSKESYELRYFQ 116

Macaca fascicularis (taxid: 9541)

>sp|Q98TF8|RL22_CHICK 60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
           + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FSKRYLKYLTKKYLKKNNLR
Sbjct: 38  NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 98  DWLRVVANSKESYELRYFQ 116

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
443734587	133	hypothetical protein CAPTEDRAFT_149706 [	0.962	0.571	0.723	1e-25
342356465	147	ribosomal protein L22 [Heliconius melpom	0.974	0.523	0.727	2e-25
392884138	127	60S ribosomal protein L22-like protein [	1.0	0.622	0.696	3e-25
357620031	147	ribosomal protein L22 [Danaus plexippus]	0.974	0.523	0.727	3e-25
315115477	147	ribosomal protein L22 [Euphydryas aurini	0.974	0.523	0.714	4e-25
70909765	95	ribosomal protein L22e [Agriotes lineatu	0.987	0.821	0.721	1e-24
15213770	147	ribosomal protein L22 [Spodoptera frugip	0.987	0.530	0.705	2e-24
208657591	154	ribosomal protein L22 [Anopheles darling	0.987	0.506	0.717	3e-24
290462069	148	60S ribosomal protein L22 [Lepeophtheiru	1.0	0.533	0.670	4e-24
225712052	148	60S ribosomal protein L22 [Lepeophtheiru	1.0	0.533	0.670	4e-24

>gi|443734587|gb|ELU18518.1| hypothetical protein CAPTEDRAFT_149706 [Capitella teleta]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query: 4   EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWL 63
           EKYL ERIK+ G+ +N GN V++ER K+K+ +T ++AFSKRYLKYLTK+YLKKNNLRDWL
Sbjct: 45  EKYLHERIKINGRVNNLGNVVTIERAKSKLTVTCEIAFSKRYLKYLTKRYLKKNNLRDWL 104

Query: 64  RVVANKKDSYELRYFQ 79
           RVVAN K+SYELRYFQ
Sbjct: 105 RVVANTKESYELRYFQ 120

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|342356465|gb|AEL28891.1| ribosomal protein L22 [Heliconius melpomene cythera]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 66/77 (85%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           + EKYL ER+KV GKT+N GN V + R KTK+I++AD+ FSKRYLKYLTK+YLKKNNLRD
Sbjct: 58  NFEKYLKERVKVEGKTNNLGNHVVIARDKTKIIISADIPFSKRYLKYLTKRYLKKNNLRD 117

Query: 62  WLRVVANKKDSYELRYF 78
           WLRVVA+  DSYELRYF
Sbjct: 118 WLRVVASAHDSYELRYF 134

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392884138|gb|AFM90901.1| 60S ribosomal protein L22-like protein [Callorhinchus milii]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%)

Query: 1   MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
            + E++L ERIKV GK  N G AV++ER K+K+ +T++V FSKRYLKYLTKKY KKNNLR
Sbjct: 37  CNFEQFLQERIKVNGKAGNLGGAVTIERNKSKITVTSEVPFSKRYLKYLTKKYPKKNNLR 96

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLRVVAN K+SYELRYFQ
Sbjct: 97  DWLRVVANSKESYELRYFQ 115

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357620031|gb|EHJ72365.1| ribosomal protein L22 [Danaus plexippus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 65/77 (84%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           + EKYL ER+KV GKT+N GN V + R KTK+I+ AD+ FSKRYLKYLTK+YLKKNNLRD
Sbjct: 58  NFEKYLKERVKVEGKTNNLGNHVVIARDKTKIIINADIPFSKRYLKYLTKRYLKKNNLRD 117

Query: 62  WLRVVANKKDSYELRYF 78
           WLRVVA+  DSYELRYF
Sbjct: 118 WLRVVASAHDSYELRYF 134

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115477|gb|ADT80711.1| ribosomal protein L22 [Euphydryas aurinia]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 65/77 (84%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           + EKYL ER+KV GKT+N GN V + R KTK+++ AD+ FSKRYLKYLTK+YLKKNNLRD
Sbjct: 58  NFEKYLKERVKVEGKTNNLGNHVVIARDKTKIVINADIPFSKRYLKYLTKRYLKKNNLRD 117

Query: 62  WLRVVANKKDSYELRYF 78
           WLRVVA+  DSYELRYF
Sbjct: 118 WLRVVASSHDSYELRYF 134

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909765|emb|CAJ17308.1| ribosomal protein L22e [Agriotes lineatus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 70/79 (88%), Gaps = 1/79 (1%)

Query: 2  DMEKYLLERIKVGGKTSNFGNAVSLERQKT-KVILTADVAFSKRYLKYLTKKYLKKNNLR 60
          + +KYLLERIK+ GKT+N GNA++L  +K  K+I++ADV FSKRYLKYLTK+YLKKNNLR
Sbjct: 4  NFQKYLLERIKLNGKTNNLGNAINLSLEKNMKIIVSADVPFSKRYLKYLTKRYLKKNNLR 63

Query: 61 DWLRVVANKKDSYELRYFQ 79
          DWLRVVA+ K+SYELRYFQ
Sbjct: 64 DWLRVVASGKESYELRYFQ 82

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15213770|gb|AAK92160.1|AF400188_1 ribosomal protein L22 [Spodoptera frugiperda]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 64/78 (82%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           + EKYL ER+KV GKT+N GN V + R KTK+ + AD+ FSKRYLKYLTK+YLKKNNLRD
Sbjct: 58  NFEKYLKERVKVEGKTNNLGNHVVIARDKTKISINADIPFSKRYLKYLTKRYLKKNNLRD 117

Query: 62  WLRVVANKKDSYELRYFQ 79
           WLRVVA+  DSYELRYF 
Sbjct: 118 WLRVVASAHDSYELRYFN 135

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|208657591|gb|ACI30092.1| ribosomal protein L22 [Anopheles darlingi]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 64/78 (82%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           D EKYL ER KV GKT N GN V+ ERQK KV + +DV FSKRYLKYLT+KYLKKN+LRD
Sbjct: 65  DFEKYLKERFKVNGKTGNLGNNVTFERQKMKVYVNSDVHFSKRYLKYLTRKYLKKNSLRD 124

Query: 62  WLRVVANKKDSYELRYFQ 79
           W+RVV+N KD YELRYF+
Sbjct: 125 WIRVVSNDKDLYELRYFR 142

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462069|gb|ADD24082.1| 60S ribosomal protein L22 [Lepeophtheirus salmonis] gi|290562307|gb|ADD38550.1| 60S ribosomal protein L22 [Lepeophtheirus salmonis]

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 64/79 (81%)

Query: 1   MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
            D E YL +RIKV GK  NFG  VSLER++ K+++++ V FSKRYLKYL KKY+KKNNLR
Sbjct: 55  FDFESYLRDRIKVNGKLKNFGKDVSLERERNKIVISSSVPFSKRYLKYLAKKYMKKNNLR 114

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLR+VA+ KDSYELRYF 
Sbjct: 115 DWLRIVASSKDSYELRYFN 133

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712052|gb|ACO11872.1| 60S ribosomal protein L22 [Lepeophtheirus salmonis] gi|290462707|gb|ADD24401.1| 60S ribosomal protein L22 [Lepeophtheirus salmonis]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 64/79 (81%)

Query: 1   MDMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
            D E YL +RIKV GK  NFG  VSLER++ K+++++ V FSKRYLKYL KKY+KKNNLR
Sbjct: 55  FDFESYLRDRIKVNGKLKNFGKDVSLERERNKIVISSSVPFSKRYLKYLAKKYMKKNNLR 114

Query: 61  DWLRVVANKKDSYELRYFQ 79
           DWLR+VA+ KDSYELRYF 
Sbjct: 115 DWLRIVASSKDSYELRYFN 133

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0015288	299	RpL22 "Ribosomal protein L22"	0.987	0.260	0.487	2.2e-15
ZFIN|ZDB-GENE-051113-276	141	rpl22 "ribosomal protein L22"	0.987	0.553	0.481	6.2e-14
RGD|2322888	128	LOC100360057 "ribosomal protei	0.987	0.609	0.468	7.9e-14
UNIPROTKB|F1N9J4	127	RPL22 "60S ribosomal protein L	0.987	0.614	0.468	1e-13
UNIPROTKB|F1NXY7	134	RPL22 "60S ribosomal protein L	0.987	0.582	0.468	1e-13
UNIPROTKB|Q98TF8	128	RPL22 "60S ribosomal protein L	0.987	0.609	0.468	1e-13
UNIPROTKB|F1N301	128	RPL22 "Uncharacterized protein	0.987	0.609	0.468	1e-13
UNIPROTKB|J9NYB5	128	RPL22 "Uncharacterized protein	0.987	0.609	0.468	1e-13
UNIPROTKB|K7EMH1	89	RPL22 "60S ribosomal protein L	0.987	0.876	0.468	1e-13
UNIPROTKB|K7ERI7	95	RPL22 "Ribosomal protein L22,	0.987	0.821	0.468	1e-13

FB|FBgn0015288 RpL22 "Ribosomal protein L22" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 38/78 (48%), Positives = 49/78 (62%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXXD 61
             D EKY+  R+KV GK +N GN V+ ER K K+I+++DV FS                  D
Sbjct:   210 DFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRD 269

Query:    62 WLRVVANKKDSYELRYFQ 79
             W+RVVAN+KDSYELRYF+
Sbjct:   270 WIRVVANEKDSYELRYFR 287

GO:0006412 "translation" evidence=ISS;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

ZFIN|ZDB-GENE-051113-276 rpl22 "ribosomal protein L22" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/79 (48%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V S+ER K+K+ +T++V FS                  
Sbjct:    52 NFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 111

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:   112 DWLRVVANTKESYELRYFQ 130

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2322888 LOC100360057 "ribosomal protein L22-like" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    38 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNTLR 97

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    98 DWLRVVANSKESYELRYFQ 116

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1N9J4 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    37 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 96

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    97 DWLRVVANSKESYELRYFQ 115

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

UNIPROTKB|F1NXY7 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    44 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 103

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:   104 DWLRVVANSKESYELRYFQ 122

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

UNIPROTKB|Q98TF8 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    38 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    98 DWLRVVANSKESYELRYFQ 116

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1N301 RPL22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    38 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    98 DWLRVVANSKESYELRYFQ 116

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9NYB5 RPL22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:    38 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 97

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    98 DWLRVVANSKESYELRYFQ 116

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|K7EMH1 RPL22 "60S ribosomal protein L22" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:     5 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 64

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    65 DWLRVVANSKESYELRYFQ 83

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|K7ERI7 RPL22 "Ribosomal protein L22, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:     2 DMEKYLLERIKVGGKTSNFGNAV-SLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXX 60
             + E++L ERIKV GK  N G  V ++ER K+K+ +T++V FS                  
Sbjct:     5 NFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLR 64

Query:    61 DWLRVVANKKDSYELRYFQ 79
             DWLRVVAN K+SYELRYFQ
Sbjct:    65 DWLRVVANSKESYELRYFQ 83

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FE58	RL223_ARATH	No assigned EC number	0.6666	0.9620	0.6129	yes	N/A
Q54GK6	RL222_DICDI	No assigned EC number	0.5789	0.9620	0.6551	yes	N/A
P67985	RL22_PIG	No assigned EC number	0.6962	0.9873	0.6093	yes	N/A
Q98TF8	RL22_CHICK	No assigned EC number	0.6962	0.9873	0.6093	yes	N/A
Q54JE3	RL221_DICDI	No assigned EC number	0.5657	0.9620	0.6551	yes	N/A
Q09668	RL22_SCHPO	No assigned EC number	0.5897	0.9746	0.6581	yes	N/A
P35268	RL22_HUMAN	No assigned EC number	0.6962	0.9873	0.6093	yes	N/A
P50887	RL22_DROME	No assigned EC number	0.6923	0.9873	0.2608	yes	N/A
P05749	RL22A_YEAST	No assigned EC number	0.52	0.9493	0.6198	yes	N/A
Q28IL6	RL22_XENTR	No assigned EC number	0.6835	0.9873	0.6093	yes	N/A
P52819	RL22_CAEEL	No assigned EC number	0.6075	0.9873	0.6	yes	N/A
Q9M9W1	RL222_ARATH	No assigned EC number	0.6538	0.9620	0.6129	yes	N/A
Q90YU6	RL22_ICTPU	No assigned EC number	0.7088	0.9873	0.6093	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam01776	112	pfam01776, Ribosomal_L22e, Ribosomal L22e protein	1e-42
PTZ00198	122	PTZ00198, PTZ00198, 60S ribosomal protein L22; Pro	1e-30

>gnl|CDD|201965 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family

 Score =  133 bits (338), Expect = 1e-42
 Identities = 56/78 (71%), Positives = 65/78 (83%)

Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
           + EK+L ERIKV GKT N GN V++ER K K+ +T+++ FSKRYLKYLTKKYLKKNNLRD
Sbjct: 25  NFEKFLHERIKVNGKTGNLGNKVTIERDKNKITVTSEIPFSKRYLKYLTKKYLKKNNLRD 84

Query: 62  WLRVVANKKDSYELRYFQ 79
           WLRVVA  KDSYELRYF 
Sbjct: 85  WLRVVATSKDSYELRYFN 102

Length = 112

>gnl|CDD|173474 PTZ00198, PTZ00198, 60S ribosomal protein L22; Provisional

 Score =  103 bits (259), Expect = 1e-30
 Identities = 47/76 (61%), Positives = 58/76 (76%)

Query: 4   EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWL 63
           E++L +RIKV GKT N GN V + R+K K+ +T  + FSKRYLKYLTKKYLKK  LRD+L
Sbjct: 40  EQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYLTKKYLKKKQLRDFL 99

Query: 64  RVVANKKDSYELRYFQ 79
           RVVA  K +YEL+YF 
Sbjct: 100 RVVATGKGTYELKYFN 115

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PTZ00198	122	60S ribosomal protein L22; Provisional	100.0
PF01776	112	Ribosomal_L22e: Ribosomal L22e protein family; Int	100.0
KOG3434|consensus	125		100.0

>PTZ00198 60S ribosomal protein L22; Provisional

Probab=100.00  E-value=2.2e-50  Score=278.74  Aligned_cols=78  Identities=60%  Similarity=1.005  Sum_probs=77.3

Q ss_pred             chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401           2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ   79 (79)
Q Consensus         2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn   79 (79)
                      +||+|||||||||||+||||+.|+|++++++|+|+|++|||||||||||||||||++|||||||||++|++|||||||
T Consensus        38 ~fekfL~erIKV~GK~gnLg~~V~v~~~k~ki~V~s~~~FSKRYLKYLTKKyLKK~~LRDwlRVVA~~K~~YELRYfn  115 (122)
T PTZ00198         38 GFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYLTKKYLKKKQLRDFLRVVATGKGTYELKYFN  115 (122)
T ss_pred             HHHHHHHHhEEECCCcCccCCcEEEEEECCEEEEEecccccHHHHHHHHHHHHhhhhhhheEEEEecCCCeEEEEEEE
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999997

>PF01776 Ribosomal_L22e: Ribosomal L22e protein family; InterPro: IPR002671 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.8e-49  Score=269.63  Aligned_cols=78  Identities=72%  Similarity=1.166  Sum_probs=73.5

Q ss_pred             chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401           2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ   79 (79)
Q Consensus         2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn   79 (79)
                      +||+||||||||||++||||+.|+|++++++|+|+|++|||||||||||||||||++|||||||||++|++|||||||
T Consensus        25 ~fe~fL~erIKV~gk~gnlg~~V~i~~~~~ki~V~s~v~fsKrYLKYLTKKyLKK~~LRdwlrVva~~K~~YeLrYfn  102 (112)
T PF01776_consen   25 DFEKFLQERIKVNGKTGNLGNKVTISRDKNKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVASSKDTYELRYFN  102 (112)
T ss_dssp             HHHHHHHHHHHHHSCSSSSTTTEEEEE-SSEEEEEESSS-SHHHHHHHHHHHHTTSSSTTTEEECCSCSTCEEEEE--
T ss_pred             HHHHHHHHheEeCCcccccCCeEEEEecCCEEEEEecccccHHHHHHHHHHHHhhcchhheEEEEEcCCCeEEEEEEe
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. Rattus norvegicus (Rat) L22 is related to ribosomal proteins from other eukaryotes and is identical in amino acid sequence to human EAP, the EBER 1 (Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) encoded RNA) associated protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_M 4A1B_M 4A19_M 4A18_M 3IZR_W 3IZS_W.

>KOG3434|consensus

Probab=100.00  E-value=1.2e-44  Score=250.98  Aligned_cols=78  Identities=71%  Similarity=1.149  Sum_probs=76.9

Q ss_pred             chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401           2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ   79 (79)
Q Consensus         2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn   79 (79)
                      +||||||||||||||+||||+.|+|++.+++|+|+|++|||+||||||||||||+++|||||||||+++++|||||||
T Consensus        37 ~fe~fLqerIKv~GK~gnLg~vv~ie~~kskitV~s~~~Fs~rylKyltkkYLkk~~LRdwlrvva~~k~~yelryf~  114 (125)
T KOG3434|consen   37 DLEKFLQERIKVNGKVGNLGNVVTIERSKSKITVVSTVHFSKRYLKYLTKKYLKKNNLRDWLRVVATDKNTYELRYFQ  114 (125)
T ss_pred             HHHHHHHHHhhhcccccccCCeEEEecCCcEEEEEecCCccHHHHHHHHHHHHhhhhHHHHHHHhhccCceEEEEecc
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
3izr_W	130	Localization Of The Large Subunit Ribosomal Protein		2e-12
3izs_W	121	Localization Of The Large Subunit Ribosomal Protein		2e-06
4a18_M	118	T.Thermophila 60s Ribosomal Subunit In Complex With		5e-05

>pdb|3IZR|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 3   MEKYLLERIKV-GGKTSNFGNAVSLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXXD 61
           +EK+L ERIKV GGK  N G++V++ R KTKV +T+D AFS                  D
Sbjct: 41  LEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRD 100
Query: 62  WLRVVANKKDS--YELRYFQ 79
           WLRV+A  KD   YELRYF 
Sbjct: 101 WLRVIAANKDRNVYELRYFN 120

>pdb|3IZS|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 121

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 5   KYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXXDWLR 64
           KYL++ IKV G   N GNAV++    T V + +   FS                  DW+R
Sbjct: 35  KYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRDWIR 94
Query: 65  VVANKKDSYELRYFQ 79
            V+ K + Y L ++Q
Sbjct: 95  FVSTKTNEYRLAFYQ 109

>pdb|4A18|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 2   DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSXXXXXXXXXXXXXXXXXXD 61
           +  ++L  +IKVGGK  N G  +++     K+ + + + FS                  +
Sbjct: 34  EFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKKQDLRN 93
Query: 62  WLRVVANKKDSYELRYF 78
           +L V ++ K+SY+LRYF
Sbjct: 94  YLYVTSSDKNSYQLRYF 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	2e-32
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	4e-31
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	1e-30

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M Length = 118

 Score =  103 bits (258), Expect = 1e-30
 Identities = 37/76 (48%), Positives = 54/76 (71%)

Query: 4   EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWL 63
            ++L  +IKVGGK  N G  +++     K+ + + + FSKRYLKYLTKKYLKK +LR++L
Sbjct: 36  AEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKKQDLRNYL 95

Query: 64  RVVANKKDSYELRYFQ 79
            V ++ K+SY+LRYF 
Sbjct: 96  YVTSSDKNSYQLRYFN 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	100.0
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	100.0
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	100.0

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M

Probab=100.00  E-value=1.2e-50  Score=277.72  Aligned_cols=78  Identities=47%  Similarity=0.905  Sum_probs=77.2

Q ss_pred             chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401           2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ   79 (79)
Q Consensus         2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn   79 (79)
                      +||+||||||||||++||||+.|+|++++++|+|+|++||||||||||||||||||+|||||||||++|++|||||||
T Consensus        34 ~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK~~LRDwlRVVA~~K~~YeLrYfn  111 (118)
T 4a18_M           34 EFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKKQDLRNYLYVTSSDKNSYQLRYFN  111 (118)
T ss_dssp             HHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHHTTCTTTEEEEEEETTEEEEEECC
T ss_pred             HHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhhccccceEEEEecCCCeEEEEEEe
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00