Psyllid ID: psy14029

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
MKAVNNKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEELNSSWGEEL
cHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccEEEEEccccccEEEccccccccccccEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEEEcccEEEEEEEEcccEEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEccEEEEEEEEEccccccccccEEEEEccccccccccEEEEccEEEEEcccccHHHHHHHHHccccccccccccccccccccccc
cccHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEcccccccEEEccccccccccccEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEEEccEEEEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEccEEEcccccEEccccccccccEEEccccccccccccccccccEEEccccccHHHHHHHHHHccccccccccHHHccccccccc
mkavnnkwryysglphadpVVADLLIDMMGVLASYSITVKELKLFFAAMKAvnnkwprhsTKLLNVLRqmpqrngpdvffsfpgkkgsamvlpplakwphengftfttwfrldpinsvnierekpylysfktskgvgytahFVGNCLVLtsmkikgkgfqhcvkyefqprkwYMIAIVYIYNRWTKSEIKcfvngqlassteMAWFvstnepfdkcyigatpeldeeRVFCGQMAAIYLFNESLSTHQICAMhrlgpgykvktgWVEELnsswgeel
mkavnnkwryysglphADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKyefqprkwYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEELNSSWGEEL
MKAVNNKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEELNSSWGEEL
*****NKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEEL********
*****NK*RYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPIN****E*EKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGK**QHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVE**********
MKAVNNKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEEL********
MKAVNNKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEELN*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKAVNNKWRYYSGLPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGPGYKVKTGWVEELNSSWGEEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query277 2.2.26 [Sep-21-2011]
Q8NFP9 2946 Neurobeachin OS=Homo sapi yes N/A 0.877 0.082 0.650 1e-100
Q9W4E2 3578 Neurobeachin OS=Drosophil yes N/A 0.617 0.047 0.941 1e-100
Q9EPN1 2936 Neurobeachin OS=Mus muscu yes N/A 0.877 0.082 0.650 1e-100
P50851 2863 Lipopolysaccharide-respon no N/A 0.877 0.084 0.604 6e-94
Q9ESE1 2856 Lipopolysaccharide-respon no N/A 0.877 0.085 0.596 2e-93
A8XSV3 2531 Putative neurobeachin hom N/A N/A 0.891 0.097 0.489 2e-74
Q19317 2507 Putative neurobeachin hom yes N/A 0.891 0.098 0.489 4e-74
Q54U63 2491 BEACH domain-containing p yes N/A 0.902 0.100 0.330 1e-25
Q54RQ8 2192 BEACH domain-containing p no N/A 0.859 0.108 0.280 5e-25
Q6ZQA0 2742 Neurobeachin-like protein no N/A 0.577 0.058 0.287 2e-10
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3 Back     alignment and function desciption
 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 158/243 (65%), Positives = 209/243 (86%)

Query: 18  DPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPD 77
           D ++ADLL+DM+GVLASYSITVKELKL F+ ++  +  WPRH+ KLL+VL QMPQR+GPD
Sbjct: 171 DDMIADLLVDMLGVLASYSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQMPQRHGPD 230

Query: 78  VFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVG 137
            FF+FPG   +A+ LPP+AKWP++NGFT  TWFR+DP+N++N++++KPYLY F+TSKGVG
Sbjct: 231 TFFNFPGCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVG 290

Query: 138 YTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQL 197
           Y+AHFVGNCL++TS+K KGKGFQHCVKY+FQPRKWYMI+IV+IYNRW  SEI+C+VNGQL
Sbjct: 291 YSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQL 350

Query: 198 ASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGP 257
            S  +MAW V+TN+ +DKC++G++   D  RVFCGQ+ A+Y+F+E+L+  QI A+H+LGP
Sbjct: 351 VSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAIHQLGP 410

Query: 258 GYK 260
           GYK
Sbjct: 411 GYK 413
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.
Homo sapiens (taxid: 9606)
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3 Back     alignment and function description
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1 Back     alignment and function description
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4 Back     alignment and function description
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1 Back     alignment and function description
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1 Back     alignment and function description
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3 Back     alignment and function description
>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2 Back     alignment and function description
>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum GN=lvsE PE=4 SV=1 Back     alignment and function description
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
350417191 3204 PREDICTED: neurobeachin-like [Bombus imp 0.891 0.077 0.910 1e-139
383855622 3257 PREDICTED: neurobeachin-like [Megachile 0.891 0.075 0.906 1e-138
328788933 2942 PREDICTED: neurobeachin-like, partial [A 0.891 0.083 0.910 1e-138
340715018 3204 PREDICTED: neurobeachin-like [Bombus ter 0.891 0.077 0.910 1e-138
345481241 3146 PREDICTED: neurobeachin-like [Nasonia vi 0.891 0.078 0.898 1e-138
270005522 2431 hypothetical protein TcasGA2_TC007591 [T 0.927 0.105 0.875 1e-137
357627742 2274 hypothetical protein KGM_20142 [Danaus p 0.945 0.115 0.854 1e-136
161077567 3712 rugose, isoform C [Drosophila melanogast 0.891 0.066 0.898 1e-136
221329705 3722 rugose, isoform D [Drosophila melanogast 0.891 0.066 0.898 1e-136
195476931 3643 GE16387 [Drosophila yakuba] gi|194187559 0.891 0.067 0.898 1e-136
>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 225/247 (91%), Positives = 237/247 (95%)

Query: 14  LPHADPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQR 73
           L  A+ VVADLLIDM+GVLASYSITVKELKL F AMKAV  KWPRHS KLLNVLRQMPQR
Sbjct: 122 LSRAETVVADLLIDMLGVLASYSITVKELKLLFGAMKAVKGKWPRHSAKLLNVLRQMPQR 181

Query: 74  NGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTS 133
           NGPDVFFSFPG+KGSA+VLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLY FKTS
Sbjct: 182 NGPDVFFSFPGRKGSAIVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYCFKTS 241

Query: 134 KGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFV 193
           KGVGY+AHFVGNCLVLTSMK+KGKGFQHCVKYEFQPRKWYMIA+VYIYNRWTKSEIKC V
Sbjct: 242 KGVGYSAHFVGNCLVLTSMKVKGKGFQHCVKYEFQPRKWYMIAVVYIYNRWTKSEIKCLV 301

Query: 194 NGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMH 253
           NGQLASSTEMAWFVSTN+PFDKCYIGATPELDEERVFCGQM+AIYLF+E+L+THQICAMH
Sbjct: 302 NGQLASSTEMAWFVSTNDPFDKCYIGATPELDEERVFCGQMSAIYLFSEALTTHQICAMH 361

Query: 254 RLGPGYK 260
           RLGPGYK
Sbjct: 362 RLGPGYK 368

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328788933|ref|XP_003251209.1| PREDICTED: neurobeachin-like, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345481241|ref|XP_001602669.2| PREDICTED: neurobeachin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|270005522|gb|EFA01970.1| hypothetical protein TcasGA2_TC007591 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357627742|gb|EHJ77332.1| hypothetical protein KGM_20142 [Danaus plexippus] Back     alignment and taxonomy information
>gi|161077567|ref|NP_001036261.2| rugose, isoform C [Drosophila melanogaster] gi|158031718|gb|ABI30968.2| rugose, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|221329705|ref|NP_001138157.1| rugose, isoform D [Drosophila melanogaster] gi|220901675|gb|ACL82890.1| rugose, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195476931|ref|XP_002100035.1| GE16387 [Drosophila yakuba] gi|194187559|gb|EDX01143.1| GE16387 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
UNIPROTKB|F1P3D0 2855 NBEA "Neurobeachin" [Gallus ga 0.877 0.085 0.654 1e-94
MGI|MGI:1347075 2936 Nbea "neurobeachin" [Mus muscu 0.877 0.082 0.650 2.9e-94
UNIPROTKB|Q8NFP9 2946 NBEA "Neurobeachin" [Homo sapi 0.877 0.082 0.650 2.9e-94
ZFIN|ZDB-GENE-041008-137415 im:7138144 "im:7138144" [Danio 0.891 0.595 0.627 4.8e-94
UNIPROTKB|E1C6E6 2850 LRBA "Uncharacterized protein" 0.891 0.086 0.595 6.4e-90
UNIPROTKB|P50851 2863 LRBA "Lipopolysaccharide-respo 0.877 0.084 0.604 2.2e-89
UNIPROTKB|E1BND6 2786 Bt.111067 "Uncharacterized pro 0.877 0.087 0.600 2.7e-89
MGI|MGI:1933162 2856 Lrba "LPS-responsive beige-lik 0.877 0.085 0.596 7.4e-89
FB|FBgn0086911 3578 rg "rugose" [Drosophila melano 0.617 0.047 0.941 1.1e-88
RGD|1311428 2709 Lrba "LPS-responsive vesicle t 0.862 0.088 0.573 1.3e-82
UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 958 (342.3 bits), Expect = 1.0e-94, P = 1.0e-94
 Identities = 159/243 (65%), Positives = 208/243 (85%)

Query:    18 DPVVADLLIDMMGVLASYSITVKELKLFFAAMKAVNNKWPRHSTKLLNVLRQMPQRNGPD 77
             D ++ADLL+DM+GVLASYSITVKELKL F+ ++  N  WPRH+ KLL+VL QMPQR+GPD
Sbjct:    73 DDMIADLLVDMLGVLASYSITVKELKLLFSMLRGENGIWPRHAVKLLSVLNQMPQRHGPD 132

Query:    78 VFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVG 137
              FF+FPG   +A+ LPP+AKWP++NGFT  TWFR+DP+N++N++++KPYLY F+TSKGVG
Sbjct:   133 TFFNFPGCSAAAIALPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVG 192

Query:   138 YTAHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQL 197
             Y+AHFVGNCL++TS+K KGKGFQHCVKY+FQPRKWYMI+IV+IYNRW  SEI+C+VNGQL
Sbjct:   193 YSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQL 252

Query:   198 ASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRLGP 257
              S  +MAW V+TN+ +DKC++G++   D  RVFCGQ+ A+Y+F E+L+  QI A+H+LGP
Sbjct:   253 VSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFTEALNPAQIFAIHQLGP 312

Query:   258 GYK 260
             GYK
Sbjct:   313 GYK 315
GO:0005802 "trans-Golgi network" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0008104 "protein localization" evidence=IEA
GO:0012505 "endomembrane system" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-137 im:7138144 "im:7138144" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8NFP9NBEA_HUMANNo assigned EC number0.65020.87720.0824yesN/A
Q9W4E2NBEA_DROMENo assigned EC number0.94150.61730.0477yesN/A
Q9EPN1NBEA_MOUSENo assigned EC number0.65020.87720.0827yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
pfam13385156 pfam13385, Laminin_G_3, Concanavalin A-like lectin 1e-11
>gnl|CDD|222092 pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily Back     alignment and domain information 
 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQH 161
             FT + W + D +           L     S G G         L  T     G     
Sbjct: 22  GSFTVSAWVKPDSLPGGT-----RLLIGGSGSGGFGLGLD-GSGKLRFTVGGGGGGAATV 75

Query: 162 CVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGAT 221
                  P +W+ +A+ Y         +K +VNG L  ST ++  +++       YIGA+
Sbjct: 76  TSGAPLPPGQWHHVAVTY-----DGGTLKLYVNGVLVGSTTLSGTITSGTTGP-LYIGAS 129

Query: 222 PELDEERVFCGQMAAIYLFNESLSTHQI 249
                +R F G +  + ++N +LS  +I
Sbjct: 130 N--GGDRYFNGAIDEVRIYNRALSAAEI 155

This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. Length = 156

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 277
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 99.78
cd00152201 PTX Pentraxins are plasma proteins characterized b 99.64
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 99.63
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 99.37
smart00560133 LamGL LamG-like jellyroll fold domain. 99.27
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 99.16
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.06
KOG1788|consensus 2799 98.87
smart00282135 LamG Laminin G domain. 98.76
PF07953195 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal 98.51
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 98.5
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 98.23
PTZ00334780 trans-sialidase; Provisional 97.73
KOG1834|consensus 952 97.41
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 97.38
KOG3516|consensus 1306 96.84
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 94.99
KOG1788|consensus 2799 94.93
PF14099224 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 94.4
KOG3516|consensus 1306 93.33
KOG3514|consensus 1591 88.95
KOG4289|consensus 2531 85.04
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information 
Probab=99.78  E-value=5.9e-18  Score=135.76  Aligned_cols=155  Identities=20%  Similarity=0.372  Sum_probs=97.7

Q ss_pred             eEeecCCCcccEECCCCCCCCCCCceeEEEEEEecCCCCCCCCCCCceEEEEEeCCCCeEEEEEeCC-eEEEEEeeecCc
Q psy14029         79 FFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGN-CLVLTSMKIKGK  157 (277)
Q Consensus        79 ff~F~g~~~s~i~lp~~~~~p~~~GfTfs~Wi~le~~~~~~~~~~~~~Lfs~~~~~g~g~e~~~~~~-~lvv~~~~~~~~  157 (277)
                      .+.|+|.. +++.+|. ..+| .++||+++||+++.....      ...+.....+..++.+.+..+ .+.+......+.
T Consensus         2 a~~f~g~~-~~i~~~~-~~~~-~~~fTi~~w~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~   72 (157)
T PF13385_consen    2 ALYFDGSN-DYISIPN-SDFP-SGSFTISFWVKPDSPSSS------QSFVFMDSSGSGGFGLFINNNGRLRFYIGNGGGG   72 (157)
T ss_dssp             EEEE-STT--EEEEES-GGGG-GTEEEEEEEEEESS--SS------EEEEEESSSSSEEEEEEEETTSEEEEEETTSEEE
T ss_pred             EEEECCCC-CEEEECC-cCCC-CCCEEEEEEEEeCCCCCC------ceEEEEecCCCCEEEEEEECCCEEEEEEeCCCce
Confidence            36788874 8999987 5678 699999999999998642      222221122334777777754 455543322111


Q ss_pred             ceeeeeeeEEeCCcEEEEEEEEEeccCCCCeEEEEECCEEeeeeecccccccCCCcceeEeCCCCCCCCCccceEeccce
Q psy14029        158 GFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPELDEERVFCGQMAAI  237 (277)
Q Consensus       158 ~~~~~~~~~~~~~~W~hlavv~~~~~~~~s~v~lYvDG~l~~s~~l~~~p~~~~~~~~~~IG~~~~~~~~~~f~g~lg~~  237 (277)
                      .........+.+++||||++|++     .+.+++||||+++.+.... ..........++||...  .....|.|.|+++
T Consensus        73 ~~~~~~~~~~~~~~W~~l~~~~~-----~~~~~lyvnG~~~~~~~~~-~~~~~~~~~~~~iG~~~--~~~~~~~g~i~~~  144 (157)
T PF13385_consen   73 NYSFSSDSNLPDNKWHHLALTYD-----GSTVTLYVNGELVGSSTIP-SNISLNSNGPLFIGGSG--GGSSPFNGYIDDL  144 (157)
T ss_dssp             SS-EE-BS---TT-EEEEEEEEE-----TTEEEEEETTEEETTCTEE-SSSSTTSCCEEEESS-S--TT--B-EEEEEEE
T ss_pred             eEEEecCcccCCCCEEEEEEEEE-----CCeEEEEECCEEEEeEecc-CCcCCCCcceEEEeecC--CCCCceEEEEEEE
Confidence            22334567889999999999998     5679999999999998765 33222344578999976  2356899999999


Q ss_pred             eEecCCCCHHHHH
Q psy14029        238 YLFNESLSTHQIC  250 (277)
Q Consensus       238 ~lf~~aLs~~~I~  250 (277)
                      .||++||+++||+
T Consensus       145 ~i~~~aLt~~eI~  157 (157)
T PF13385_consen  145 RIYNRALTAEEIQ  157 (157)
T ss_dssp             EEESS---HHHHH
T ss_pred             EEECccCCHHHcC
Confidence            9999999999996

...
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG1788|consensus Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>PTZ00334 trans-sialidase; Provisional Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>KOG1788|consensus Back     alignment and domain information
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3514|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 3e-07
4dqa_A355 Uncharacterized protein; two domains structure, DU 3e-07
2vxr_A 482 Botulinum neurotoxin type G; hydrolase, gangliosid 6e-04
2vu9_A 444 Botulinum neurotoxin A heavy chain; hydrolase, met 6e-04
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Length = 217 Back     alignment and structure
 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 20/190 (10%)

Query: 80  FSFPGK-KGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGY 138
            SFPG        L  +   P     T     +    N+        Y++S  TS     
Sbjct: 9   ISFPGTQNPKFPHLRFMQTLPAVRQLTVCQRIKPFHRNT-------GYIFSCATSNQDNQ 61

Query: 139 TAHFV---GNCLVLTSMKIKGKGFQHCV-KYEFQPRKWYMIAIVYIYNRWTKSEIKCFVN 194
               +    +  +   +++     ++     E +  +WY +  V+         +  + N
Sbjct: 62  FITSMYVKSDGTLNLGLQVNASSNKYISCPIEIELGQWYHVCHVW---SGVDGRMAVYAN 118

Query: 195 GQLASSTEMAWFVSTNEPFDKCYIGATP-----ELDEERVFCGQMAAIYLFNESLSTHQI 249
           G    + E               IG          +E+  + G+++ + +++E+L+THQ+
Sbjct: 119 GSPCGTMENVGKGHQISAGGTVVIGQEQDKIGGGFEEQESWSGELSDLQVWDEALTTHQV 178

Query: 250 CAMHRLGPGY 259
             +       
Sbjct: 179 STVASCNGIR 188
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Length = 355 Back     alignment and structure
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, recepto secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} PDB: 3mpp_G Length = 482 Back     alignment and structure
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} PDB: 2vua_A 3fuo_A Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 99.65
3pvn_A206 C-reactive protein; pentraxin family, immune syste 99.63
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 99.6
1a8d_A 452 Tetanus neurotoxin; clostridial, ganglioside bindi 99.54
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 99.48
2nyy_A 1295 Botulinum neurotoxin type A; neurotoxin, FAB, prot 99.47
4dqa_A355 Uncharacterized protein; two domains structure, DU 99.47
3rsj_A 413 BONT/F; clostridium botulinum type F, ganglioside 99.45
3v0a_B 1196 NTNH; botulinum neurotoxin, toxin, neurotoxin asso 99.33
1epw_A 1290 Bontoxilysin B, botulinum neurotoxin type B; zinc, 99.31
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 99.24
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 99.21
2vu9_A 444 Botulinum neurotoxin A heavy chain; hydrolase, met 99.12
3n7l_A 424 Neurotoxin; HCR/D-SA, ganglioside binding loop; 2. 98.98
3pme_A 420 Type C neurotoxin; structural genomics, seattle st 98.93
3ffz_A 1252 Botulinum neurotoxin type E; botulinum neurotoxin 98.88
2vxr_A 482 Botulinum neurotoxin type G; hydrolase, gangliosid 98.88
3vuo_A 1196 NTNHA; protection of botulinum neurotoxin, botulin 98.84
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.68
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.6
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 98.58
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 98.53
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 98.51
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 98.43
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 98.42
3v64_A191 Low-density lipoprotein receptor-related protein; 98.42
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 98.16
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 98.13
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 98.0
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 97.98
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 97.94
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 97.93
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 97.92
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 97.83
1ms9_A648 Trans-sialidase; trans-glycosylation, protein-acrb 97.79
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 97.72
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 97.68
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 97.66
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 97.5
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 97.37
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 97.19
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 97.1
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 97.08
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 96.79
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 95.81
3zr5_A656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 95.03
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 93.45
3zyp_A218 CIP1; metal binding protein, calcium-binding, CBM- 93.3
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 89.36
3gne_A252 Val-1; alginate lyase, polysaccharide lyase family 82.63
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
Probab=99.65  E-value=6.6e-15  Score=125.38  Aligned_cols=163  Identities=18%  Similarity=0.286  Sum_probs=105.7

Q ss_pred             EeecCCC-cccEECCCCCCCCCCCceeEEEEEEecCCCCCCCCCCCceEEEEEeCC-CCeEEEEEeC-Ce----EEEEEe
Q psy14029         80 FSFPGKK-GSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-GVGYTAHFVG-NC----LVLTSM  152 (277)
Q Consensus        80 f~F~g~~-~s~i~lp~~~~~p~~~GfTfs~Wi~le~~~~~~~~~~~~~Lfs~~~~~-g~g~e~~~~~-~~----lvv~~~  152 (277)
                      |.|+... .++..+++....|..+.||+|+|++.+. ..      ...|||.-+.. ...+.++..+ +.    +.+.+.
T Consensus         9 ~~Fp~~s~~~yv~l~~~~~~p~l~~fTvc~wv~~~~-~~------~~~lfSy~~~~~~n~l~l~~~~~~~g~~~~~l~i~   81 (217)
T 3flp_A            9 ISFPGTQNPKFPHLRFMQTLPAVRQLTVCQRIKPFH-RN------TGYIFSCATSNQDNQFITSMYVKSDGTLNLGLQVN   81 (217)
T ss_dssp             EEECCCBTTBCCEEEESSCBCCBSEEEEEEEEEESC-SS------CEEEEEEEETTEEEEEEEEEEECTTSEEEEEEEET
T ss_pred             EEcCCCCCCCEEEEecCCCCCCCccEEEEEEEEecC-CC------CeeEEEEECCCCCceEEEEEeCCCCcceEEEEEEC
Confidence            6676542 3566665423457568999999999876 32      46799987642 2234444432 22    444332


Q ss_pred             eecCcc-eeeeeeeEEeCCcEEEEEEEEEeccCCCCeEEEEECCEEeeeee-cccccccCCCcceeEeCCCCCC-----C
Q psy14029        153 KIKGKG-FQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTE-MAWFVSTNEPFDKCYIGATPEL-----D  225 (277)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~W~hlavv~~~~~~~~s~v~lYvDG~l~~s~~-l~~~p~~~~~~~~~~IG~~~~~-----~  225 (277)
                         |.. ........+.+++|||||+|.+.   ....+.+||||+++.+.+ +. -.....+-....||.....     +
T Consensus        82 ---g~~~~~~~~~~~~~~g~W~Hv~~t~d~---~~G~~~lYvdG~~~~~~~~~~-~g~~i~~~g~l~lG~~~~~~gg~f~  154 (217)
T 3flp_A           82 ---ASSNKYISCPIEIELGQWYHVCHVWSG---VDGRMAVYANGSPCGTMENVG-KGHQISAGGTVVIGQEQDKIGGGFE  154 (217)
T ss_dssp             ---TCCCEEEEEEEECCTTSCEEEEEEEET---TTTEEEEEETTEEEEEESCSS-TTCCBCSCBEEEESSCCSBTTBCCC
T ss_pred             ---CccceeEEcccccCCCCEEEEEEEEEC---CCCEEEEEECCEEecceeccc-cCcEECCCCEEEeCCcccCCCCccC
Confidence               221 11223456889999999999983   234899999999998743 21 1111112345678876431     2


Q ss_pred             CCccceEeccceeEecCCCCHHHHHHHHhCC
Q psy14029        226 EERVFCGQMAAIYLFNESLSTHQICAMHRLG  256 (277)
Q Consensus       226 ~~~~f~g~lg~~~lf~~aLs~~~I~~iy~lG  256 (277)
                      ....|.|.|++++||+.+|+++||+.++..+
T Consensus       155 ~~~~f~G~i~~v~iw~~aLs~~eI~~l~~c~  185 (217)
T 3flp_A          155 EQESWSGELSDLQVWDEALTTHQVSTVASCN  185 (217)
T ss_dssp             GGGCCCEEEEEEEEESSCCCHHHHHHHHCTT
T ss_pred             CCCceEEEEeeEEEECccCCHHHHHHHHhCC
Confidence            3468999999999999999999999999744
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A Back     alignment and structure
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Back     alignment and structure
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ... Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} PDB: 2vua_A 3fuo_A Back     alignment and structure
>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium botulinum} PDB: 3azw_A 3azv_A 3n7m_A 4fvv_A* 3n7k_A 3r4s_A* 3r4u_A Back     alignment and structure
>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics center for infectious disease, ssgcid, botulinum neurotoxin; 1.56A {Clostridium botulinum} PDB: 4f83_A* 3ogg_A 3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A Back     alignment and structure
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E, botulism, domain organization, endopeptidase, translocation, hydrolase; 2.65A {Clostridium botulinum} Back     alignment and structure
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, recepto secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} PDB: 3mpp_G Back     alignment and structure
>3vuo_A NTNHA; protection of botulinum neurotoxin, botulinum neurotoxin, to; 3.90A {Clostridium botulinum} Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina} Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 277
d1a8da1247 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium 2e-05
d1epwa1218 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostr 3e-04
d2slia1196 b.29.1.9 (A:81-276) Leech intramolecular trans-sia 8e-04
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Length = 247 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 102 NGFTFTTWFRLDPINS-------VNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT---- 150
           N FT + W R+  +++        N       +     S G G++    GN L+ T    
Sbjct: 85  NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 144

Query: 151 --SMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVS 208
              ++             +   KW  I I         S    ++NG L  S E+    +
Sbjct: 145 AGEVRQITFRDLPDKFNAYLANKWVFITITNDRL----SSANLYINGVLMGSAEITGLGA 200

Query: 209 TNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMH 253
                +   +               +    +F ++L+  +I  ++
Sbjct: 201 IR-EDNNITLKLDR--CNNNNQYVSIDKFRIFCKALNPKEIEKLY 242
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Length = 218 Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 99.78
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 99.73
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 99.62
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 99.58
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 99.45
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 99.4
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 99.37
d2ah2a1225 Trypanosoma sialidase, C-terminal domain {Parasiti 98.73
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 98.67
d1n1ta1222 Trypanosoma sialidase, C-terminal domain {Trypanos 98.62
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 98.57
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 98.42
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 98.32
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 97.85
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 97.69
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 96.82
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 95.22
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-18  Score=142.10  Aligned_cols=165  Identities=14%  Similarity=0.152  Sum_probs=109.6

Q ss_pred             ceEee--cCCCcccEECCCCCCCCCCCceeEEEEEEecCCCCCCCCCCCceEEEEEeCCCC-eEEEEEeCCeEEEEEeee
Q psy14029         78 VFFSF--PGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGV-GYTAHFVGNCLVLTSMKI  154 (277)
Q Consensus        78 ~ff~F--~g~~~s~i~lp~~~~~p~~~GfTfs~Wi~le~~~~~~~~~~~~~Lfs~~~~~g~-g~e~~~~~~~lvv~~~~~  154 (277)
                      ..|.|  ++.+ +++.+++....+ .+.||+|+|++.+....     ....+|+..+.... .+..+...+.......  
T Consensus         7 ~af~F~~~s~~-dYv~l~~~~~~~-~~~fTvs~Wvk~~~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--   77 (206)
T d1b09a_           7 KAFVFPKESDT-SYVSLKAPLTKP-LKAFTVCLHFYTELSST-----RGYSIFSYATKRQDNEILIFWSKDIGYSFTV--   77 (206)
T ss_dssp             EEEEECSCCSS-CEEEECCCCCSC-BSEEEEEEEEECSGGGT-----CCEEEEEEECSSCTTSEEEEEETTTEEEEEE--
T ss_pred             CEEEcCCCCCC-CEEEECCCCCCC-CcCEEEEEEEEeCCCCC-----CcceEEEecCCCCceeEEEEecCCccEEEEe--
Confidence            45888  4443 788887643334 47999999999876543     23456665543222 2333333333221111  


Q ss_pred             cCcceeeeeeeEEeCCcEEEEEEEEEeccCCCCeEEEEECCEEeeeeecccccccCCCcceeEeCCCCCC-----CCCcc
Q psy14029        155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGATPEL-----DEERV  229 (277)
Q Consensus       155 ~~~~~~~~~~~~~~~~~W~hlavv~~~~~~~~s~v~lYvDG~l~~s~~l~~~p~~~~~~~~~~IG~~~~~-----~~~~~  229 (277)
                       + .........+.+++|||||+|++..   ...+++||||+++.+.... .+........+.||.....     +....
T Consensus        78 -~-~~~~~~~~~~~~~~W~Hvavt~d~~---~g~~~lYinG~~~~~~~~~-~~~~~~~~~~~~iG~~~~~~g~~~~~~~~  151 (206)
T d1b09a_          78 -G-GSEILFEVPEVTVAPVHICTSWESA---SGIVEFWVDGKPRVRKSLK-KGYTVGAEASIILGQEQDSFGGNFEGSQS  151 (206)
T ss_dssp             -T-TEEEEEECCCCCCSCEEEEEEEETT---TCEEEEEETTEECCCEECC-TTCCBCSSCEEEESSCCSBTTBCCCGGGC
T ss_pred             -c-cccEEecCcccCCcEEEEEEEEecc---CCeEEEEECCeEEeeeccc-CCceeccCCcEEeccccccccccccCCCc
Confidence             1 1122345667899999999999842   3479999999999987655 3333334456789975421     23457


Q ss_pred             ceEeccceeEecCCCCHHHHHHHHhCCC
Q psy14029        230 FCGQMAAIYLFNESLSTHQICAMHRLGP  257 (277)
Q Consensus       230 f~g~lg~~~lf~~aLs~~~I~~iy~lGp  257 (277)
                      |.|+|++++||++||+++||+.||.-|+
T Consensus       152 F~G~i~~~~i~~raLs~~EI~~l~~~g~  179 (206)
T d1b09a_         152 LVGDIGNVNMWDFVLSPDEINTIYLGGP  179 (206)
T ss_dssp             CCEEEEEEEEESSCCCHHHHHHHHHTCC
T ss_pred             eeeEEeeEEEEcccCCHHHHHHHHhCCC
Confidence            9999999999999999999999998775
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]} Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure