Psyllid ID: psy14080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH
Secondary Structure (PSIPRED)
ccccccccEEEcccEEEEEccccEEEEEEEccccccEEEEEEccccEEEEEEcEEEEEcccEEEEEEccccccEEEEccccccccEEEEEEEccccccEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEccEEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEcccccEEEEEccccccEEEEEEEcccccccEEEEEEccccccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWvrrrdwhiltsgvltytndaRFQVIhtdgsddwnLQIKFLQkrdngtyecqaqpytttshsqnapglgdllmh
Flexible Loop (DISEMBL)
MVAAPGGILTAFGQISTGFLAvfsysdktvrDIVKVrvswvrrrdwhiltsgvltytndARFQVIHtdgsddwnLQIKFLQKRDNGTYECQaqpytttshsqnapglgdllmh
Low Complexity Region (SEG)
MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH
Disordered region (IsUnstruct)
*****GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC***********************
Disordered Region (DISOPRED)
**********AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH
Disordered Region (DISEMBL)
MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH
Disordered Region (DISPRO)
******G****FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLL**
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSHSQNAPGLGDLLMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
357627522	316	hypothetical protein KGM_18218 [Danaus p	0.548	0.196	0.725	5e-22
242024368	63	conserved hypothetical protein [Pediculu	0.486	0.873	0.854	9e-22
270010796	248	hypothetical protein TcasGA2_TC010603 [T	0.486	0.221	0.8	1e-21
328717890	308	PREDICTED: hemicentin-2-like [Acyrthosip	0.637	0.233	0.638	3e-21
156555008	298	PREDICTED: lachesin-like isoform 1 [Naso	0.646	0.244	0.602	6e-21
357618525	290	hypothetical protein KGM_16345 [Danaus p	0.530	0.206	0.733	1e-20
383856591	295	PREDICTED: hemicentin-1-like [Megachile	0.637	0.244	0.610	4e-20
332029812	285	Leucine-rich repeats and immunoglobulin-	0.646	0.256	0.589	6e-20
340709368	296	PREDICTED: hemicentin-1-like [Bombus ter	0.646	0.246	0.602	6e-20
350412274	296	PREDICTED: hemicentin-1-like [Bombus imp	0.646	0.246	0.602	6e-20

>gi|357627522|gb|EHJ77191.1| hypothetical protein KGM_18218 [Danaus plexippus]

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query: 30  VRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89
           VR++ ++ VSWVRRRDWHI++SGV  YTND RFQV+H++GSDDW LQIK++QKRDNGTYE
Sbjct: 105 VRNLGELGVSWVRRRDWHIISSGVFMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYE 164

Query: 90  CQ 91
           CQ
Sbjct: 165 CQ 166

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024368|ref|XP_002432600.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518060|gb|EEB19862.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 50/55 (90%)

Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
          VSWVRRRDWHILTSG+ TYTND RFQV HTDG DDWNLQIK++QKRDNGTYECQ 
Sbjct: 8  VSWVRRRDWHILTSGMFTYTNDERFQVAHTDGGDDWNLQIKYVQKRDNGTYECQV 62

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010796|gb|EFA07244.1| hypothetical protein TcasGA2_TC010603 [Tribolium castaneum]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 51/55 (92%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
           +VSWVRRRDWHIL+SG+ TYTND RFQ++H +GSDDW LQIKF+QKRDNGTYECQ
Sbjct: 103 QVSWVRRRDWHILSSGLFTYTNDERFQILHAEGSDDWTLQIKFVQKRDNGTYECQ 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717890|ref|XP_001946097.2| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 57/72 (79%)

Query: 20  LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF 79
           L   +Y    VR++ +  +SWVRRRDWHILTSG+ TYTND RF V+H +GSDDW L+IK+
Sbjct: 87  LGSTAYLHCRVRNLGERTISWVRRRDWHILTSGMFTYTNDERFTVLHAEGSDDWTLKIKY 146

Query: 80  LQKRDNGTYECQ 91
           +QKRDNGTYECQ
Sbjct: 147 VQKRDNGTYECQ 158

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555008|ref|XP_001603054.1| PREDICTED: lachesin-like isoform 1 [Nasonia vitripennis] gi|345494408|ref|XP_003427286.1| PREDICTED: lachesin-like isoform 2 [Nasonia vitripennis]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 60/78 (76%), Gaps = 5/78 (6%)

Query: 17  TGFL--AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWN 74
           T FL   V + +++TV D     +SW+RRRDWH+LTS + TYTND RFQV+H +GSDDW 
Sbjct: 70  TAFLHCKVRNLAERTVSD---AEISWIRRRDWHVLTSSMFTYTNDERFQVLHPEGSDDWT 126

Query: 75  LQIKFLQKRDNGTYECQA 92
           LQIK++Q+RDNGTYECQ 
Sbjct: 127 LQIKYVQERDNGTYECQV 144

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618525|gb|EHJ71470.1| hypothetical protein KGM_16345 [Danaus plexippus]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 51/60 (85%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
           +VSWVR+RDWHIL+SG  TYTND RFQV+H +GS+DW LQIKF+QKRDNGTYECQ    T
Sbjct: 81  QVSWVRKRDWHILSSGKFTYTNDERFQVLHGEGSEDWTLQIKFVQKRDNGTYECQVSTRT 140

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856591|ref|XP_003703791.1| PREDICTED: hemicentin-1-like [Megachile rotundata]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 5/77 (6%)

Query: 17  TGFL--AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWN 74
           T FL   V + +++TV D     +SW+RRRD+HILTS + TYTND RFQV+H +GSDDW 
Sbjct: 70  TAFLHCKVRNLAERTVSD---AEISWIRRRDFHILTSSMFTYTNDERFQVLHPEGSDDWT 126

Query: 75  LQIKFLQKRDNGTYECQ 91
           LQIK++Q+RDNGTYECQ
Sbjct: 127 LQIKYVQERDNGTYECQ 143

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029812|gb|EGI69681.1| Leucine-rich repeats and immunoglobulin-like domains protein 1 [Acromyrmex echinatior]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 5/78 (6%)

Query: 17  TGFL--AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWN 74
           T FL   V + +++TV D     +SW+RRRD+H+LTS + TYTND RFQV+H +GSDDW 
Sbjct: 70  TAFLHCKVRNLAERTVSD---AEISWIRRRDFHVLTSSMFTYTNDERFQVLHPEGSDDWT 126

Query: 75  LQIKFLQKRDNGTYECQA 92
           LQIK++Q+RDNGTYECQ 
Sbjct: 127 LQIKYVQERDNGTYECQV 144

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709368|ref|XP_003393282.1| PREDICTED: hemicentin-1-like [Bombus terrestris]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 58/78 (74%), Gaps = 5/78 (6%)

Query: 17  TGFL--AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWN 74
           T FL   V + +D+TV D     +SW+RRRD+H+LTS   TYTND RFQV+H +GSDDW 
Sbjct: 70  TAFLHCKVRNLADRTVSD---AEISWIRRRDFHVLTSSTFTYTNDERFQVLHPEGSDDWT 126

Query: 75  LQIKFLQKRDNGTYECQA 92
           LQIK++Q RDNGTYECQ 
Sbjct: 127 LQIKYVQDRDNGTYECQV 144

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412274|ref|XP_003489592.1| PREDICTED: hemicentin-1-like [Bombus impatiens]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 58/78 (74%), Gaps = 5/78 (6%)

Query: 17  TGFL--AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWN 74
           T FL   V + +D+TV D     +SW+RRRD+H+LTS   TYTND RFQV+H +GSDDW 
Sbjct: 70  TAFLHCKVRNLADRTVSD---AEISWIRRRDFHVLTSSTFTYTNDERFQVLHPEGSDDWT 126

Query: 75  LQIKFLQKRDNGTYECQA 92
           LQIK++Q RDNGTYECQ 
Sbjct: 127 LQIKYVQDRDNGTYECQV 144

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
FB|FBgn0085414	326	dpr12 "dpr12" [Drosophila mela	0.592	0.205	0.588	5.1e-19
FB|FBgn0053512	323	dpr4 "dpr4" [Drosophila melano	0.548	0.191	0.612	1.2e-17
FB|FBgn0040823	283	dpr6 "dpr6" [Drosophila melano	0.690	0.275	0.5	2.3e-16
FB|FBgn0040726	367	dpr "defective proboscis exten	0.584	0.179	0.558	6.2e-16
FB|FBgn0053481	312	dpr7 "dpr7" [Drosophila melano	0.477	0.173	0.611	2.3e-15
FB|FBgn0034286	419	dpr13 "dpr13" [Drosophila mela	0.628	0.169	0.507	2.7e-15
FB|FBgn0261871	457	dpr2 [Drosophila melanogaster	0.477	0.118	0.618	1.5e-14
FB|FBgn0038282	602	dpr9 "dpr9" [Drosophila melano	0.769	0.144	0.446	1.6e-14
FB|FBgn0037908	336	dpr5 "dpr5" [Drosophila melano	0.548	0.184	0.564	1.6e-14
FB|FBgn0052600	344	dpr8 "dpr8" [Drosophila melano	0.814	0.267	0.391	3e-14

FB|FBgn0085414 dpr12 "dpr12" [Drosophila melanogaster (taxid:7227)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 40/68 (58%), Positives = 50/68 (73%)

Query:    37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PY 95
             ++SW+RRRDWHIL+SG   YTND RF ++HT GS+ W LQIKF+Q+RD+G YECQ   P 
Sbjct:   113 QISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNMWTLQIKFVQRRDHGMYECQVSTPT 172

Query:    96 TTTSHSQN 103
                SH  N
Sbjct:   173 GIISHFVN 180

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

FB|FBgn0053512 dpr4 "dpr4" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query:    30 VRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89
             VR++    VSW+R+RD HILT G+LTYTND RFQ +H++GSD+W L+I   Q RD+GTYE
Sbjct:    69 VRNLGDRAVSWIRKRDLHILTVGILTYTNDQRFQSLHSEGSDEWTLRISSPQPRDSGTYE 128

Query:    90 CQ 91
             CQ
Sbjct:   129 CQ 130

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0040823 dpr6 "dpr6" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/80 (50%), Positives = 49/80 (61%)

Query:    17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQ 76
             T  +   +Y    VR++    VSW+R RD HILT G  TYT+D RFQ  H   ++DW LQ
Sbjct:    84 TALMGKSAYLSCRVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQ 143

Query:    77 IKFLQKRDNGTYECQ--AQP 94
             IK+ QKRD G YECQ   QP
Sbjct:   144 IKWAQKRDAGMYECQISTQP 163

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0040726 dpr "defective proboscis extension response" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 38/68 (55%), Positives = 50/68 (73%)

Query:    38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ--AQPY 95
             VSW+R+RD HILT+G  TYT+D RFQV+  DGS +W LQIK+ Q RD+G YECQ   +P 
Sbjct:    85 VSWIRKRDLHILTAGGTTYTSDQRFQVLRPDGSANWTLQIKYPQPRDSGVYECQINTEPK 144

Query:    96 TTTSHSQN 103
              + S++ N
Sbjct:   145 MSLSYTFN 152

GO:0035199 "salt aversion" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0050914 "sensory perception of salty taste" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0053481 dpr7 "dpr7" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query:    38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
             VSW+R+RD HILT+ + TYT D RF VIH  GS+DW+L+I + Q RD+G YECQ
Sbjct:    83 VSWMRKRDLHILTTNIYTYTGDQRFSVIHPPGSEDWDLKIDYAQPRDSGVYECQ 136

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0034286 dpr13 "dpr13" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 36/71 (50%), Positives = 48/71 (67%)

Query:    29 TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
             TV  I +  VSW+R++D+H+LT G+ TY++D RF   H   S+DW LQIKF+Q RD G Y
Sbjct:   198 TVHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSEDWTLQIKFVQLRDAGVY 257

Query:    89 ECQAQPYTTTS 99
             ECQ   +  TS
Sbjct:   258 ECQVSTHPPTS 268

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0261871 dpr2 [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query:    38 VSWVRRRDWHILTSGVLTYTNDARF-QVIHTDGSDDWNLQIKFLQKRDNGTYECQ 91
             VSW+R+RD HILT+G+LTYT+D RF QV+ T  S DW L +K+ Q RD+G YECQ
Sbjct:   138 VSWIRKRDLHILTAGILTYTSDERFKQVVRTADSKDWTLHVKYAQPRDSGIYECQ 192

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0038282 dpr9 "dpr9" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 42/94 (44%), Positives = 59/94 (62%)

Query:    11 AFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIH 66
             AF +  T  L   +Y +  V+++    + ++VSWVR RD H+LT G  TYT+D RF+ IH
Sbjct:   261 AFSKNVTALLGKTAYLNCRVKNLGNKTMLLQVSWVRHRDIHLLTVGRYTYTSDQRFRAIH 320

Query:    67 TDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
                ++DW LQIK+ Q RD+G YECQ    +TT H
Sbjct:   321 QPQTEDWMLQIKYPQHRDSGIYECQV---STTPH 351

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048149 "behavioral response to ethanol" evidence=IMP

FB|FBgn0037908 dpr5 "dpr5" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query:    30 VRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE 89
             VR +    VSW+R+RD HILT G++TYTND RF   H D SD+W L+I  +Q+RD G YE
Sbjct:   114 VRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARHIDNSDEWVLKIVSVQQRDAGVYE 173

Query:    90 CQ 91
             CQ
Sbjct:   174 CQ 175

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0052600 dpr8 "dpr8" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query:    10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG 69
             T  G   TG +         V+++    VSWVR RD H+LT G  TYT+D RF+ +H+  
Sbjct:    46 TTIGTNITGLVGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPH 105

Query:    70 SDDWNLQIKFLQKRDNGTYECQAQPYTTTSHS 101
             ++DW L+I++ Q++D+G YECQ        HS
Sbjct:   106 AEDWTLRIRYAQRKDSGIYECQISTTPPIGHS 137

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
cd00099	105	cd00099, IgV, Immunoglobulin variable domain (IgV)	4e-04
smart00410	85	smart00410, IG_like, Immunoglobulin like	0.003
smart00409	85	smart00409, IG, Immunoglobulin	0.003
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.004

>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV)

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 8/64 (12%)

Query: 37 RVSWVRRRDWH-----ILTSGVLTYTNDA---RFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
           + W R++        I  S   +        RF          + L I  LQ  D+  Y
Sbjct: 23 YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82

Query: 89 ECQA 92
           C  
Sbjct: 83 YCAV 86

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 105

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 36  VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
             V+W ++    +  SG        RF V  +  +    L I  +   D+GTY C A   
Sbjct: 24  PEVTWYKQGGKLLAESG--------RFSVSRSGST--STLTISNVTPEDSGTYTCAATNS 73

Query: 96  TTTSHS 101
           + ++ S
Sbjct: 74  SGSASS 79

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 36  VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
             V+W ++    +  SG        RF V  +  +    L I  +   D+GTY C A   
Sbjct: 24  PEVTWYKQGGKLLAESG--------RFSVSRSGST--STLTISNVTPEDSGTYTCAATNS 73

Query: 96  TTTSHS 101
           + ++ S
Sbjct: 74  SGSASS 79

Length = 85

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 32 DIVKVRVSWVRRRDWHILTSGVLTYTNDA----------RFQVIHTDGSDDWNLQIKFLQ 81
                V W ++         +   T+            R  +      +D++L I  L+
Sbjct: 28 SSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGSKNDFSLTISNLR 87

Query: 82 KRDNGTYECQ 91
            D+GTY C 
Sbjct: 88 LSDSGTYTCA 97

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.91
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.88
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.88
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.84
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.82
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.77
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.76
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.74
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.73
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.73
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.73
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.73
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	99.72
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.72
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	99.72
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.72
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	99.72
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.72
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.72
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	99.72
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.72
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	99.71
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.7
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.7
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.69
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.69
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.68
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.68
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.68
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	99.68
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	99.68
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.67
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	99.67
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	99.67
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.67
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.67
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	99.67
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.67
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.67
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.66
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	99.66
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.66
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.65
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.65
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.65
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.65
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	99.65
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.65
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.64
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.63
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.62
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.62
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.62
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.61
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.6
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.6
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.59
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.59
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.59
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.59
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.59
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	99.59
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.58
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.58
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.58
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.58
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.58
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.58
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.57
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.57
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.56
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	99.56
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.56
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	99.55
smart00406	81	IGv Immunoglobulin V-Type.	99.55
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.54
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.54
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.52
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	99.51
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.51
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.5
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.5
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.5
smart00409	86	IG Immunoglobulin.	99.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.49
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.49
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.49
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.48
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.48
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.47
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.46
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.46
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	99.46
PHA02987	189	Ig domain OX-2-like protein; Provisional	99.45
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.45
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.44
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.41
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.4
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.38
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	99.37
KOG3513|consensus	1051		99.37
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.36
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	99.36
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.36
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.35
PHA03376	221	BARF1; Provisional	99.35
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.35
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.35
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.35
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.33
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	99.33
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	99.32
PHA02826	227	IL-1 receptor-like protein; Provisional	99.31
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.31
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.3
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.28
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.28
PHA02826	227	IL-1 receptor-like protein; Provisional	99.27
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.24
KOG3513|consensus	1051		99.24
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.24
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.24
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.22
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.2
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.19
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.18
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.14
KOG4194|consensus	873		99.09
KOG4221|consensus	1381		99.07
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.06
PHA02785	326	IL-beta-binding protein; Provisional	99.05
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.04
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	99.02
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.98
PHA02785	326	IL-beta-binding protein; Provisional	98.93
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.8
KOG4221|consensus	1381		98.8
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.76
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.66
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.64
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.62
KOG4222|consensus	1281		98.47
KOG4222|consensus	1281		98.34
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.27
KOG4194|consensus	873		98.21
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.19
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.18
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.14
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.12
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.02
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.91
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.83
smart00407	75	IGc1 Immunoglobulin C-Type.	97.78
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.74
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.7
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.69
PHA02982	251	hypothetical protein; Provisional	97.64
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.59
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.59
PHA02633	63	hypothetical protein; Provisional	97.58
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.51
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.37
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.36
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.28
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.21
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.2
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.13
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.05
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.03
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.01
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.97
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.83
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.75
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.6
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.58
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.56
KOG4597|consensus	560		96.53
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.22
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.03
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.97
PHA03042	286	CD47-like protein; Provisional	95.49
KOG1480|consensus	909		95.42
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.05
PHA03240	258	envelope glycoprotein M; Provisional	95.04
KOG3515|consensus	741		94.82
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.22
PF12988	137	DUF3872: Domain of unknown function, B. Theta Gene	93.01
PHA03282	540	envelope glycoprotein E; Provisional	92.87
PHA03189	348	UL14 tegument protein; Provisional	90.17
PHA03052	69	Hypothetical protein; Provisional	89.19
PF01688	161	Herpes_gI: Alphaherpesvirus glycoprotein I; InterP	89.09
PF06214	126	SLAM: Signaling lymphocytic activation molecule (S	88.7
PHA02914	500	Immunoglobulin-like domain protein; Provisional	87.94
PHA03282	540	envelope glycoprotein E; Provisional	87.13
PHA02865	338	MHC-like TNF binding protein; Provisional	86.23
PF02440	63	Adeno_E3_CR1: Adenovirus E3 region protein CR1; In	84.2
PHA03273	486	envelope glycoprotein C; Provisional	82.19

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.91  E-value=3.2e-23  Score=129.78  Aligned_cols=93  Identities=13%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.+++++.+|++|+|+|++.+.+...++|++.+ ..++.+.......++||.+.+ .+++.|+|+|++++.+|+|.|+|+
T Consensus         3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~-~~~i~~~~~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPN-RQTIYFRDVRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             ccCceEEcCCCcEEEEEEEccCCccEEEEEecC-CcEEEecCccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEE
Confidence            457899999999999999999988899999765 555555555666899999874 356899999999999999999999


Q ss_pred             ecCCCCeeEEEEece
Q psy14080         92 AQPYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~~~s~~~~L~V  106 (113)
                      +++.|+.+..+.+.|
T Consensus        81 v~t~p~~~~~~~~~~   95 (95)
T cd05881          81 LYTDPPQEAYTTITV   95 (95)
T ss_pred             EEcccCeEEEEEEEC
Confidence            999999988887765

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.88  E-value=7.3e-22  Score=123.46  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ..+++++.+|++|.|.|.+.+.+.+.|.|||.+ ...++.++.....++||.+.. ...+.++|+|++++++|+|.|+|+
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~-~~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCC-CeEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEE
Confidence            457899999999999999999999999999754 355555544444678998743 345679999999999999999999


Q ss_pred             ecCCCCeeEEEEece
Q psy14080         92 AQPYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~~~s~~~~L~V  106 (113)
                      +.+.+..+..++|.|
T Consensus        81 ~~t~~~~~~~~~l~v   95 (95)
T cd07701          81 LFTMPVKTSKAYLTV   95 (95)
T ss_pred             eEeecCccEEEEEEC
Confidence            988777788888876

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.88  E-value=1.6e-21  Score=122.10  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=78.1

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.+++++.+|++|.|+|.+.+.+.+.|.|+|.. ..++..+......+.||.+.. ...+.++|+|++|+.+|+|.|+|+
T Consensus         3 ~~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~-~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           3 VTQDETVAVGGTVTLKCGVKEHDNSSLQWSNTA-QQTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccccEEEecCCcEEEEEEEeCCCCCeEEEeccC-ccEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEE
Confidence            567899999999999999999999999999864 445566666666789998764 344679999999999999999999


Q ss_pred             ecCCCCeeEEEEece
Q psy14080         92 AQPYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~~~s~~~~L~V  106 (113)
                      +.+.+..++.+.|.|
T Consensus        81 ~~t~~~~~~~~~~~v   95 (95)
T cd05882          81 IFTMPVRTAKATVTV   95 (95)
T ss_pred             EEeeccccEEEEEEC
Confidence            988888888888765

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.84  E-value=7.4e-20  Score=113.74  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.+++++.+|++|+|.|.+.+.+.+.+.|++.. ..++..+......++||.+.. ..++.++|+|.+++.+|+|.|+|+
T Consensus         3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~-~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPN-QQTLYFNDKRALRDNRIQLVN-FSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCC-CcEEEeccccccccCcEEEEc-CCCCeeEEEEccCCcccCEEEEEE
Confidence            567889999999999999988888899999754 344443332223468998853 345678999999999999999999


Q ss_pred             ecCCCCeeEEEEece
Q psy14080         92 AQPYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~~~s~~~~L~V  106 (113)
                      +...+..+..+.|.|
T Consensus        81 ~~~~~~~~~~~~~~v   95 (95)
T cd05717          81 LYTMPVQTAKATVTV   95 (95)
T ss_pred             EecCCCceEEEEEEC
Confidence            987666677788766

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.82  E-value=6.1e-19  Score=110.30  Aligned_cols=96  Identities=20%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.|..  .+++++.+|++++|.|.+.+.+.+.|.|||+.++..+..+.  ...+.||.+..  ..+..+|+|.+++.+|
T Consensus         2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~--~~~~~~L~I~~v~~~D   75 (98)
T cd05870           2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKG--QHGESSLHIKDVKLSD   75 (98)
T ss_pred             CCEEEe--eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEee--cCCeeEEEEeeCCcCC
Confidence            444532  56789999999999999999999999999976544332111  12356888752  3356799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEece
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      +|.|+|.+ +..+..+..++|.|
T Consensus        76 ~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          76 SGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CEEEEEEEeccCCcceeEEEEeC
Confidence            99999999 56678888888875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.77  E-value=2.4e-17  Score=101.96  Aligned_cols=90  Identities=17%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+....+..+++.+|+++.|.|.+.+.|.+.|.|||..  ..+       ..++|+.+... .....+|.|.+++.+|+|
T Consensus         2 ~~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g--~~l-------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G   71 (92)
T cd05737           2 RVVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKND--QAL-------ALSDHYNVKVE-QGKYASLTIKGVSSEDSG   71 (92)
T ss_pred             ceeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECC--EEC-------ccCCCEEEEEc-CCCEEEEEEccCChhhCE
Confidence            45566777889999999999999999999999999853  222       23567776532 234568999999999999


Q ss_pred             EEEEee-cCCCCeeEEEEece
Q psy14080         87 TYECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        87 ~Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      .|.|.+ +..+..+..+.|.|
T Consensus        72 ~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          72 KYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEEEEECCCcceEEEEEeC
Confidence            999999 55678887777765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.76  E-value=1.6e-17  Score=105.07  Aligned_cols=85  Identities=14%  Similarity=0.046  Sum_probs=64.6

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +....+++.+|++|+|+|.+++.+...+.|||+..   ...+.. ... ....++||.+..+...+.++|+|++++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            34556889999999999999987788999999863   222222 111 1134689988765556899999999999999


Q ss_pred             EEEEEeecCC
Q psy14080         86 GTYECQAQPY   95 (113)
Q Consensus        86 G~Y~C~~~~~   95 (113)
                      |+|+|++...
T Consensus        83 G~Y~C~~~~~   92 (109)
T cd04983          83 AVYFCALSES   92 (109)
T ss_pred             EEEEEEEecC
Confidence            9999999643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.74  E-value=7.5e-17  Score=99.98  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=68.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +....+..+++.+|+++.|.|.+.+.+.+.+.|||++.  .+       ..+.||.+.. .+....+|.|.+++.+|+|.
T Consensus         3 ~~~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~--~~-------~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~   72 (92)
T cd05891           3 VIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQ--DI-------ELSEHYSVKL-EQGKYASLTIKGVTSEDSGK   72 (92)
T ss_pred             hhccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCE--EC-------CCCCCEEEEE-cCCCEEEEEECCCChhhCEE
Confidence            44556678899999999999999998999999999642  11       2356776643 22334689999999999999


Q ss_pred             EEEee-cCCCCeeEEEEece
Q psy14080         88 YECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        88 Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      |+|.+ +..+..+..+.|.|
T Consensus        73 Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          73 YSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEEEeCCCceeeEEEEEC
Confidence            99999 45677777777765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.73  E-value=1.3e-16  Score=100.08  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +....+++++..|+++.|.|.+.+.+.+.+.|+|.  +..|.       .+.|+.+..  ......|.|.+++.+|+|.|
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd--g~~l~-------~~~~~~~~~--~~~~s~L~I~~~~~~D~G~Y   71 (98)
T cd05762           3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF--RKQIQ-------EGEGIKIEN--TENSSKLTITEGQQEHCGCY   71 (98)
T ss_pred             eEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC--CEEec-------CCCcEEEEe--cCCeeEEEECCCChhhCEEE
Confidence            34566788999999999999999999999999983  34432       355777663  23567999999999999999


Q ss_pred             EEee-cCCCCeeEEEEeceecc
Q psy14080         89 ECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        89 ~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      .|.+ +..+..+..+.|.|.+.
T Consensus        72 tc~a~N~~G~~~~~~~l~V~~~   93 (98)
T cd05762          72 TLEVENKLGSRQAQVNLTVVDK   93 (98)
T ss_pred             EEEEEcCCCceeEEEEEEEecC
Confidence            9999 56688888999999864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.73  E-value=1e-16  Score=99.22  Aligned_cols=94  Identities=18%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.|.  ...+.++.+|+++.|.|.+.+.+.+.|.|+|..  ..+..+.  ...+.|+.+.  ......+|.|++++.+|
T Consensus         2 ~P~i~--~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~L~I~~v~~~D   73 (96)
T cd05732           2 QPKIT--YLENQTAVELEQITLTCEAEGDPIPEITWRRAT--RNFSEGD--KSLDGRIVVR--GHARVSSLTLKDVQLTD   73 (96)
T ss_pred             Cccce--ecCceeEecCCcEEEEEEEeEcCCCcEEEEECC--cccCCCC--ccccceEEEe--CCccEEEEEECcCCcCc
Confidence            44453  345689999999999999999999999999954  2221110  0124577664  23456799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEece
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      +|.|+|.+ +..+..+..++|.|
T Consensus        74 ~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          74 AGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             CEEeEEEEEeCCCCcEEEEEEeC
Confidence            99999999 56678888888875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.73  E-value=2e-16  Score=97.71  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +|+.++.. ++++++.+|+++.|.|.+.+.+.+.+.|+|.+  ..+       ..+.|+.+..  .....+|.|.+++.+
T Consensus         2 ~~~~~~~~-p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g--~~l-------~~~~~~~~~~--~~~~~~L~i~~~~~~   69 (92)
T cd05747           2 LPATILTK-PRSLTVSEGESARFSCDVDGEPAPTVTWMREG--QII-------VSSQRHQITS--TEYKSTFEISKVQMS   69 (92)
T ss_pred             CCCccccc-CccEEEeCCCcEEEEEEEeecCCCEEEEEECC--EEC-------CCCCcEEEEE--cCCeeEEEECCCCcc
Confidence            46666654 46789999999999999999999999999853  222       2356887753  334679999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEe
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNA  104 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L  104 (113)
                      |+|.|.|.+ +..+..+..+.|
T Consensus        70 D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          70 DEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             cCEeEEEEEEcCCCCEeEEEEe
Confidence            999999999 556777777766

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.73  E-value=2e-16  Score=97.05  Aligned_cols=83  Identities=17%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      ..+.+.+|+++.|.|.+.+.|.+.|.|+|.+  ..+.      ..++|+.+..  .....+|.|.+++.+|+|.|.|.+ 
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~--~~i~------~~~~r~~~~~--~~~~~~L~I~~~~~~D~G~Y~c~a~   72 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGD--KAFT------ETEGRVRVES--YKDLSSFVIEGAEREDEGVYTITVT   72 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECC--EECc------cCCCeEEEEE--cCCeEEEEECCCccCcCEEEEEEEE
Confidence            3578899999999999999999999999843  2221      1245787753  234679999999999999999999 


Q ss_pred             cCCCCeeEEEEece
Q psy14080         93 QPYTTTSHSQNAPG  106 (113)
Q Consensus        93 ~~~~~~s~~~~L~V  106 (113)
                      +..+..+..+.|.|
T Consensus        73 N~~G~~~~~~~l~V   86 (86)
T cd05894          73 NPVGEDHASLFVKV   86 (86)
T ss_pred             eCCCcEEEEEEEEC
Confidence            56688888888875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=99.72  E-value=8.7e-17  Score=103.25  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ++..+.+++.+|++|+|+|.++.. ....|.|||+...   ..+.......  ..++||.+..+...+.++|+|++++++
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            455667889999999999999864 4578999999742   2232211111  235899987555667899999999999


Q ss_pred             CCEEEEEeecCC
Q psy14080         84 DNGTYECQAQPY   95 (113)
Q Consensus        84 D~G~Y~C~~~~~   95 (113)
                      |+|+|+|++...
T Consensus        83 Dsg~Y~C~~~~~   94 (116)
T cd07706          83 DSAKYFCALSTL   94 (116)
T ss_pred             HCEEEEEEEECC
Confidence            999999999753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.72  E-value=5.6e-17  Score=99.85  Aligned_cols=84  Identities=17%  Similarity=0.146  Sum_probs=64.4

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |++|+|.|.+.+.+.+.|.|+|.....++... .......||.+..     +.+|+|.+++.+|+|.|+|.+ +..+..+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQ-----TGDLTITNVQRSDVGYYICQTLNVAGSIL   74 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECC-----CCeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence            78999999999999999999986433222211 1112356888752     347999999999999999999 5568888


Q ss_pred             EEEEeceeccc
Q psy14080        100 HSQNAPGLGDL  110 (113)
Q Consensus       100 ~~~~L~V~g~~  110 (113)
                      ..+.|.|++..
T Consensus        75 ~~~~l~V~~~~   85 (90)
T cd05726          75 TKAYLEVTDVI   85 (90)
T ss_pred             EEEEEEEeecc
Confidence            89999999864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=99.72  E-value=6.7e-17  Score=100.78  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             EEEecCCcEEEEEEEcc-CCCCEEEEEecCC---CeEEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         16 STGFLAVFSYSDKTVRD-IVKVRVSWVRRRD---WHILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~---~~~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      +++.+|++|+|+|.+.. .....+.|||+..   ..++.. +.......+||.+..+..++.++|+|++++.+|+|+|+|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            57889999999999875 3567899999974   233321 111112357998865566788999999999999999999


Q ss_pred             eecCCC
Q psy14080         91 QAQPYT   96 (113)
Q Consensus        91 ~~~~~~   96 (113)
                      ++...+
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997655

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.72  E-value=3.8e-16  Score=95.23  Aligned_cols=87  Identities=23%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +.....++.+.+|+++.|.|.+++.+.+.|.|+|.  +..+.       .+.|+.+...  ....+|.|.+++.+|+|.|
T Consensus         3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~--~~~l~-------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y   71 (90)
T PF07679_consen    3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN--GRPLT-------SSQRYQIESD--GGSSSLTIKNVTREDAGTY   71 (90)
T ss_dssp             EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET--TEEEE-------SSSSEEEEEE--TTEEEEEESSESGGGSEEE
T ss_pred             EEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc--cccee-------eeeeeeeecc--cceeEEccCCCChhhCEEE
Confidence            34445789999999999999999998899999985  44443       4778887643  3788999999999999999


Q ss_pred             EEeec-CCCCeeEEEEece
Q psy14080         89 ECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~-~~~~~s~~~~L~V  106 (113)
                      .|.+. ..+..+..++|.|
T Consensus        72 ~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   72 TCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEC
Confidence            99995 5567778888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=99.72  E-value=6.2e-17  Score=103.78  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             EeecceEEEecCCcEEEEEEEcc--CCCCEEEEEecCC---Ce-EEEecc---eEE---cCCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRD--IVKVRVSWVRRRD---WH-ILTSGV---LTY---TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~~---~~-~l~~~~---~~~---~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.+..+++.+|++|+|.|.+++  .+.+.|.|||+.+   +. ++....   ...   ....||.+..+..+..++|+|
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   81 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI   81 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence            34556788999999999999987  5678999999963   22 332211   111   135799987654447899999


Q ss_pred             ccCCCCCCEEEEEeecCC
Q psy14080         78 KFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~   95 (113)
                      ++++++|+|+|+|++...
T Consensus        82 ~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          82 QNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EECCHHHCEEEEEEEecC
Confidence            999999999999999643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.72  E-value=1.2e-16  Score=101.08  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .++.+..+++.+|++|+|+|.+.+.. ...++|||+..   +..+......  ...++||.+.  .++..++|+|+++++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~   80 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEP   80 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCCh
Confidence            45566778999999999999997654 57899999973   2333322111  1234799875  345789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        81 ~Dsg~Y~Ca~~~   92 (106)
T cd04980          81 EDAAVYYCQQYG   92 (106)
T ss_pred             HHCEEEEEEEeC
Confidence            999999999953

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.72  E-value=1.8e-16  Score=99.30  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             cceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.+..+.+|++++|.|.+.+.|. +.|.|+|.++..+..       .+.|+.+.. .+....+|+|.+++++|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVR-NDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEe-CCCCceEEEEeccChhhCEEEEEE
Confidence            34457889999999999999985 699999854432321       244776653 223457999999999999999999


Q ss_pred             ec-CC-CCeeEEEEece
Q psy14080         92 AQ-PY-TTTSHSQNAPG  106 (113)
Q Consensus        92 ~~-~~-~~~s~~~~L~V  106 (113)
                      +. .. +..+..++|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            95 43 78888888877

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=99.72  E-value=6.7e-17  Score=100.95  Aligned_cols=77  Identities=16%  Similarity=0.062  Sum_probs=57.5

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +++.+|++|+|.|.++..  ....++||||.+   +. ++..... ....++||.+..  +.+.++|+|++++++|+|+|
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEE
Confidence            367899999999999865  557899999984   22 2322211 112257999863  44789999999999999999


Q ss_pred             EEeecC
Q psy14080         89 ECQAQP   94 (113)
Q Consensus        89 ~C~~~~   94 (113)
                      +|++..
T Consensus        79 ~C~~~~   84 (98)
T cd04984          79 YCQVWD   84 (98)
T ss_pred             EEEEcc
Confidence            999964

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.72  E-value=7.7e-17  Score=102.60  Aligned_cols=83  Identities=14%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ecce--E-E--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SGVL--T-Y--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~~~--~-~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +.+..+++.+|++|+|+|.+.+ +.+.|+|||+..   +..|. ....  . .  ..++||.+..+ +...++|.|++++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~   80 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE   80 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence            4566789999999999999988 668899999974   23332 2211  1 1  12579987642 2368999999999


Q ss_pred             CCCCEEEEEeecCC
Q psy14080         82 KRDNGTYECQAQPY   95 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~   95 (113)
                      ++|+|+|+|++...
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999999653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=99.71  E-value=1.6e-16  Score=100.95  Aligned_cols=79  Identities=23%  Similarity=0.311  Sum_probs=58.3

Q ss_pred             EEEecCCcEEEEEEEccC-CCCEEEEEecCCC---e---E-EEe---cceEEc---CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         16 STGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---H---I-LTS---GVLTYT---NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~---~-l~~---~~~~~~---~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +++.+|++|+|.|.+.+. ....+.||||.++   .   . +..   +...+.   .++||.+...++.+.++|+|++++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            368899999999999763 4568999999853   2   1 111   111221   257998765566778999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|+...
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=2.4e-16  Score=96.97  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+.++.+|+++.|.|.+.+.|.+.|.|+|....  +       ....|+..      .+..|.|.+++.+|+|.|.|.
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~--~-------~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP--M-------PATAEISM------SGAVLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC--C-------CCCCEEec------CCCEEEECcCChhhCEEEEEE
Confidence            44467899999999999999999999999995421  1       11223332      234899999999999999999


Q ss_pred             e-cCCCCeeEEEEecee
Q psy14080         92 A-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~  107 (113)
                      + +..+..+..+.|.|+
T Consensus        72 A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          72 AENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEcCCCceEEEEEEEEC
Confidence            9 566888888888874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.70  E-value=4.9e-16  Score=96.66  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ..+++.+.+|+++.|.|.+.+.|. .|.|||.++ ..+.       ...|+.+..  ++...+|.|.+++.+|+|.|.|.
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g-~~~~-------~~~r~~~~~--~g~~~~L~I~~v~~~D~G~Y~C~   74 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQG-EKIV-------SSQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQ   74 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCC-eEec-------CCCCEEEEe--CCCeeEEEEecCChHHCEEEEEE
Confidence            345678999999999999999887 899998543 3321       356887752  33456999999999999999999


Q ss_pred             ec-CCCC-eeEEEEece
Q psy14080         92 AQ-PYTT-TSHSQNAPG  106 (113)
Q Consensus        92 ~~-~~~~-~s~~~~L~V  106 (113)
                      +. ..+. ....+.|.|
T Consensus        75 A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          75 ATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEcCCCcEEEEEEEEEE
Confidence            95 4554 367777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.70  E-value=1.9e-16  Score=94.41  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=58.8

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.|.|+|..  ..+.       .+.|+.+.     .+.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~--~~l~-------~~~r~~~~-----~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~   66 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGT--ELLV-------NNSRISIW-----DDGSLEILNITKLDEGSYTCFAENNRGKAN   66 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCC--Eecc-------cCCCEEEc-----CCCEEEECcCChhHCEEEEEEEECCCCcee
Confidence            789999999999999999999843  2331       35688875     2458999999999999999999 5667888


Q ss_pred             EEEEece
Q psy14080        100 HSQNAPG  106 (113)
Q Consensus       100 ~~~~L~V  106 (113)
                      ..+.|.|
T Consensus        67 ~~~~l~~   73 (73)
T cd05852          67 STGVLSV   73 (73)
T ss_pred             EEEEEEC
Confidence            8888875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.69  E-value=6.6e-16  Score=94.53  Aligned_cols=85  Identities=18%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ++.....++++.+|+++.|+|.+.+.+.+.|.|+|.+.. +.        ...++..      .+..|.|.+++.+|+|.
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~-~~--------~~~~~~~------~~~~L~i~~v~~~D~G~   67 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS-MP--------SSAEISM------SGAVLKIPNIQFEDEGT   67 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc-CC--------CccEEEE------eCCEEEECCCCcccCEE
Confidence            344455778899999999999999999999999985421 11        1222221      25599999999999999


Q ss_pred             EEEee-cCCCCeeEEEEecee
Q psy14080         88 YECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        88 Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      |.|.+ +..+..+..++|.|.
T Consensus        68 Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          68 YECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEEEEEECCCcEEEEEEEEEC
Confidence            99999 566788888888774

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.69  E-value=5.6e-16  Score=92.94  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      +.|.|.+.+.|.|.|.|+|.  +..+..      ..+||.+..+ +.+..+|.|++++.+|+|.|.|.+ +..+..+..+
T Consensus         1 v~l~C~v~G~P~P~i~W~k~--~~~i~~------~~~r~~~~~~-~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a   71 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRN--NEMVQY------NTDRISLYQD-NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA   71 (75)
T ss_pred             CEEEEEEEecCCCeEEEEEC--CEECcC------CCCeEEEEEc-CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence            57999999999999999984  333321      2458887642 334469999999999999999999 5678888889


Q ss_pred             Eece
Q psy14080        103 NAPG  106 (113)
Q Consensus       103 ~L~V  106 (113)
                      .|.|
T Consensus        72 ~L~V   75 (75)
T cd05892          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            9876

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.68  E-value=2e-16  Score=99.06  Aligned_cols=88  Identities=18%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             ecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         19 FLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        19 ~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+|++|+|+|.+.. .....|.|+|+....++..+.    .....+++|+.....+.++++|+|++++.+|+|.|+|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999999976 556789999985444444331    1112233443221123467999999999999999999996


Q ss_pred             CC-C-CeeEEEEece
Q psy14080         94 PY-T-TTSHSQNAPG  106 (113)
Q Consensus        94 ~~-~-~~s~~~~L~V  106 (113)
                      .. + .....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            44 3 3467777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.68  E-value=3.8e-16  Score=92.87  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=58.3

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT   98 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~   98 (113)
                      +|+++.|.|.+.+.|.+.|.|+|..  ..+       ..+.|+.+.     .+.+|.|.+++.+|+|.|.|.+ +..+..
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g--~~~-------~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   66 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGG--SQL-------SVDRRHLVL-----SSGTLRISRVALHDQGQYECQAVNIVGSQ   66 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECC--EEC-------CCCCCeEEc-----cCCeEEEeeCCHHhCEEEEEEEEeCCCce
Confidence            6899999999999999999999843  222       124555543     2458999999999999999999 566888


Q ss_pred             eEEEEece
Q psy14080         99 SHSQNAPG  106 (113)
Q Consensus        99 s~~~~L~V  106 (113)
                      +..++|.|
T Consensus        67 ~~~~~L~V   74 (74)
T cd05745          67 RTVAQLTV   74 (74)
T ss_pred             eEEEEEeC
Confidence            88888876

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.68  E-value=1.2e-15  Score=97.66  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             cCCcEEEEEEEccCC----------CCEEEEEecCC---CeEEE-ecceE-Ec--CCCCEEEEEe-CCCCcEEEEEccCC
Q psy14080         20 LAVFSYSDKTVRDIV----------KVRVSWVRRRD---WHILT-SGVLT-YT--NDARFQVIHT-DGSDDWNLQIKFLQ   81 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~----------~~~V~W~k~~~---~~~l~-~~~~~-~~--~~~R~~~~~~-~~~~~~~L~I~~v~   81 (113)
                      +|++|+|+|.++...          ...|.|||+..   ..++. .+... ..  -.+|+.+..+ .+.+..+|+|++++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999997543          36799999853   22222 22221 11  1358877532 34678899999999


Q ss_pred             CCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         82 KRDNGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      .+|+|+|+|.+... ...+..+.|.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g~  109 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTGV  109 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEEE
Confidence            99999999999654 46788899999884

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=99.68  E-value=7.3e-16  Score=99.59  Aligned_cols=82  Identities=17%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEE-ec---ceE-E--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILT-SG---VLT-Y--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~-~~---~~~-~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++..  ...+.||||..   +.+|. ..   ... .  ...+||.+..+...+.++|+|+++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3456788999999999987543  56799999984   23332 11   111 1  124799987655556789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+...
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999999964

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=99.68  E-value=1.6e-15  Score=97.54  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             ecceEEEecCCcEEEEEEEccCC----CCEEEEEecCCC-----eEEEecc-eEE-cCC----CCEEEEEeCCCCcEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW-----HILTSGV-LTY-TND----ARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~-----~~l~~~~-~~~-~~~----~R~~~~~~~~~~~~~L~   76 (113)
                      .+..+.+.+|++|+|+|.++...    ...|.||++..+     .++.... ... ..+    +|+.+..+...++++|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35567888999999999997542    257999987631     2332221 111 123    45555544556789999


Q ss_pred             EccCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080         77 IKFLQKRDNGTYECQAQPYTT---TSHSQNAPG  106 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V  106 (113)
                      |.+++++|+|+|+|++...+.   .+...+|.|
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            999999999999999964433   233466654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.67  E-value=1.4e-15  Score=96.05  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=63.8

Q ss_pred             cCCcEEEEEEEccC------CCCEEEEEecCCC-----eEEEe-cce-EE-c-CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         20 LAVFSYSDKTVRDI------VKVRVSWVRRRDW-----HILTS-GVL-TY-T-NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        20 ~G~~a~L~C~v~~~------~~~~V~W~k~~~~-----~~l~~-~~~-~~-~-~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .|++|+|+|.++..      ....|.|||+...     .++.. +.. .. . -.+|+.+.. ...++.+|+|++++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence            48999999999765      2467999998631     12222 111 11 1 136887753 34568899999999999


Q ss_pred             CEEEEEeecC-CCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQP-YTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~-~~~~s~~~~L~V~g~  109 (113)
                      +|+|+|.+.. .+..+..+.|.|.|.
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~~~  105 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLRGV  105 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEEEE
Confidence            9999999954 467788999999885

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=99.67  E-value=1.1e-15  Score=98.74  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             ecceEEEecCCcEEEEEEEccCC------CCEEEEEecCCC----eEEEe-cceE-E--cCCCCEEEEEeCCCCcEEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV------KVRVSWVRRRDW----HILTS-GVLT-Y--TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~------~~~V~W~k~~~~----~~l~~-~~~~-~--~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .++.+.+.+|++|+|+|.+....      ...+.|||+..+    .+... .... .  .-.+||++..+...++.+|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            35567889999999999886332      356999999843    22221 1111 1  123699987556778899999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      ++++++|+|+|+|.+..
T Consensus        85 ~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          85 SDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             ccCChhhCeEEEEEEEc
Confidence            99999999999999954

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=99.67  E-value=3.3e-16  Score=99.19  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=56.6

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCCC-----eEEE-ec---ceEEc----CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRDW-----HILT-SG---VLTYT----NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~-----~~l~-~~---~~~~~----~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ++.+|++|+|+|.+.......|+||||.++     ..|. ..   .....    ...||.+.  ...+.++|+|++++++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~~~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--RSSNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--ecCCEEEEEECCCCHH
Confidence            467899999999997766678999999843     2222 21   11111    25788875  3457899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|++..
T Consensus        80 DsgtY~Ca~~~   90 (104)
T cd05720          80 NEGYYFCSVAS   90 (104)
T ss_pred             HCEEEEEEEcc
Confidence            99999999964

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.67  E-value=2.8e-15  Score=92.89  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .+.++++.+|+++.|.|.+.+.| +.|.|++.++..+.        ..+|+.+.. ......+|+|.+++.+|+|.|.|.
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~--------~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~   75 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLV--------TQQQISVVQ-NDDVRSTLTIYNANIEDAGIYKCV   75 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEec--------cCCCEEEEe-CCCCEEEEEEecCCcccCEEEEEE
Confidence            34557899999999999999886 48999985543332        234555543 234567999999999999999999


Q ss_pred             ecCC--CCeeEEEEece
Q psy14080         92 AQPY--TTTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~--~~~s~~~~L~V  106 (113)
                      +...  ...+.+++|.|
T Consensus        76 A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          76 ATDAKGTESEATVNLKI   92 (92)
T ss_pred             EEcCCCCcceeEEEEEC
Confidence            9543  35577777765

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.67  E-value=1.1e-15  Score=94.78  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ...+++.++.+|++++|.|.+.+. .+.|.|||..  ..+        ..+|+.+..    +..+|.|.+++.+|+|.|.
T Consensus         7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng--~~l--------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~   71 (91)
T cd05740           7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNG--SLL--------VPPRLQLSN----DNRTLTFNNVTRSDTGHYQ   71 (91)
T ss_pred             ccccCccccccCCcEEEEEEeCCC-CCEEEEEECC--EEC--------CCCCEEEeC----CCCEEEECcCChhhCEEEE
Confidence            566678899999999999999999 8999999843  222        245665542    3458999999999999999


Q ss_pred             Eeec-CCC-CeeEEEEecee
Q psy14080         90 CQAQ-PYT-TTSHSQNAPGL  107 (113)
Q Consensus        90 C~~~-~~~-~~s~~~~L~V~  107 (113)
                      |.+. ..+ ..+..+.|.|.
T Consensus        72 C~a~N~~G~~~S~~~~L~V~   91 (91)
T cd05740          72 CEASNEVSNMTSDPYILNVN   91 (91)
T ss_pred             EEEEcCCCCEEeeeEEEEeC
Confidence            9994 444 46788888873

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=99.67  E-value=1.7e-15  Score=97.57  Aligned_cols=95  Identities=17%  Similarity=0.052  Sum_probs=63.0

Q ss_pred             ecceEEEecCCcEEEEEEEccCC----CCEEEEEecC--C--C-eEEEecce-EEcCC----CCEEEEEeCCCCcEEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRR--D--W-HILTSGVL-TYTND----ARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~--~--~-~~l~~~~~-~~~~~----~R~~~~~~~~~~~~~L~I   77 (113)
                      .++.+.+.+|++|+|+|.+...+    ...|.||++.  +  . .++..... ....+    +|+.+..+...++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45678899999999999997543    2469998763  1  2 23333221 11223    354444445567899999


Q ss_pred             ccCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080         78 KFLQKRDNGTYECQAQPYTT---TSHSQNAPG  106 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V  106 (113)
                      ++++++|+|+|+|.+...+.   .....+|.|
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            99999999999999975433   234556554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.67  E-value=1.4e-15  Score=96.15  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             cCCcEEEEEEEccC------CCCEEEEEecC---C-Ce-EEE-ecceE-EcC--CCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         20 LAVFSYSDKTVRDI------VKVRVSWVRRR---D-WH-ILT-SGVLT-YTN--DARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        20 ~G~~a~L~C~v~~~------~~~~V~W~k~~---~-~~-~l~-~~~~~-~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .|++|+|+|.+...      ....|.|+|+.   . .. ++. .+... ...  ..|+... ....++.+|+|++++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence            48999999999754      25699999983   1 22 222 22111 111  1244332 235678999999999999


Q ss_pred             CEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      +|+|+|.+... ...+..+.|.|.|-
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~~~  105 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVRGV  105 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEEEE
Confidence            99999999643 56689999999884

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.67  E-value=1.4e-15  Score=97.74  Aligned_cols=90  Identities=18%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             cCCcEEEEEEEccCC------------CCEEEEEecCC---CeEEEe-cce-EEc-C-CCCEEEEEe-CCCCcEEEEEcc
Q psy14080         20 LAVFSYSDKTVRDIV------------KVRVSWVRRRD---WHILTS-GVL-TYT-N-DARFQVIHT-DGSDDWNLQIKF   79 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~------------~~~V~W~k~~~---~~~l~~-~~~-~~~-~-~~R~~~~~~-~~~~~~~L~I~~   79 (113)
                      +|++++|+|.+....            ...|.|+|+..   ..++.. +.. .+. . .+|+.+... ...++.+|+|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999997543            46899999853   233332 222 121 1 248888532 245789999999


Q ss_pred             CCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      ++.+|+|+|+|.+... ...+..+.|.|+|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~gv  111 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKGI  111 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEee
Confidence            9999999999999754 56678899999985

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=2.1e-15  Score=93.39  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             CceeeEe-ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTA-FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~-~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+.|... ...++++.+|+++.|.|.+.+.+.+.|.|+|.  +..+..      .+.|+....    ....|+|.+++.+
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~--g~~~~~------~~~~~~~~~----~~~~L~I~~v~~~   68 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKD--GEPIES------GEEKYSFNE----DGSEMTILDVDKL   68 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEEC--CEECcC------CCCEEEEeC----CCCEEEECCCChh
Confidence            4444443 33457899999999999999999999999984  222211      135665432    3457999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |+|.|+|.+ +..+..+..+.|.|..
T Consensus        69 D~G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          69 DEAEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             hCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            999999999 5667888899998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=99.66  E-value=1.1e-15  Score=95.66  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             EEEecCCcEEEEEEEccC-CCCEEEEEecCC---Ce-EEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         16 STGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WH-ILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~-~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      +++.+|++|+|+|.+... ....|.|||+..   .. ++.....    .....+|+.+..+...+.++|+|++++.+|+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            468899999999999976 677899999864   22 2222111    11235788887654457899999999999999


Q ss_pred             EEEEeecCCC
Q psy14080         87 TYECQAQPYT   96 (113)
Q Consensus        87 ~Y~C~~~~~~   96 (113)
                      +|+|.+...+
T Consensus        81 ~Y~C~v~~~~   90 (105)
T cd00099          81 VYYCAVSLSG   90 (105)
T ss_pred             EEEEEEecCC
Confidence            9999996544

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.66  E-value=1.5e-15  Score=94.22  Aligned_cols=85  Identities=16%  Similarity=0.274  Sum_probs=61.2

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+++.+|++|.|.|... .+.+.|.|||++++..+..   ....+.|+...      ...|.|++++++|+|+|+|.+.
T Consensus         4 ~~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~   73 (91)
T cd05871           4 KVVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKE---EVKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAV   73 (91)
T ss_pred             eEEEEecCCcEEEEEECC-CCCceEEEEEECCCCCccc---cccccccEEEe------cCeEEEeeCChhHCEEEEEEEE
Confidence            346789999999999964 7788999999874322110   01234677654      3469999999999999999995


Q ss_pred             C--CCCeeEEEEeceec
Q psy14080         94 P--YTTTSHSQNAPGLG  108 (113)
Q Consensus        94 ~--~~~~s~~~~L~V~g  108 (113)
                      .  .......++|.|..
T Consensus        74 ~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          74 EHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             ccCCeEEEEEEEEEEec
Confidence            3  33445678888763

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.65  E-value=1.1e-15  Score=95.41  Aligned_cols=77  Identities=19%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCC-------CeEEEecceEEcCCCCEEEEEe-CCCCcEEEEEccCCCCCCEE
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRD-------WHILTSGVLTYTNDARFQVIHT-DGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~-------~~~l~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~   87 (113)
                      |.+.+|++|+|+|.+++.+.+.++||+...       +.++..+..  ..++||....+ .+++.++|+|++++.+|+|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~--~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPS--KLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEeccc--ccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence            578899999999999988889999994321       222222211  23567776531 14568999999999999999


Q ss_pred             EEEeecC
Q psy14080         88 YECQAQP   94 (113)
Q Consensus        88 Y~C~~~~   94 (113)
                      |+|.+..
T Consensus        80 Y~C~v~~   86 (94)
T cd07690          80 YICEVED   86 (94)
T ss_pred             EEEEECC
Confidence            9999854

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.65  E-value=1.9e-15  Score=90.66  Aligned_cols=78  Identities=14%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCC
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTT   97 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~   97 (113)
                      |+++.|.|.+.+.|.+.|.|||+...  ..+....   ....++...     +..+|.|.+++++|+|+|+|.+ +..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   72 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN---HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGL   72 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCC---cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCce
Confidence            78999999999999999999997521  1111000   011234332     3579999999999999999999 55678


Q ss_pred             eeEEEEece
Q psy14080         98 TSHSQNAPG  106 (113)
Q Consensus        98 ~s~~~~L~V  106 (113)
                      .+..+.|.|
T Consensus        73 ~~~~~~l~v   81 (81)
T cd05765          73 LRANFPLSV   81 (81)
T ss_pred             EEEEEEEeC
Confidence            888888876

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=5.1e-15  Score=91.07  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ...+++..+.+|+++.|.|.+.+.|.+.|.|+|.+  ..+.       .+.+....  ......+|+|.+++.+|+|.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g--~~~~-------~~~~~~~~--~~~~~~~L~I~~v~~~D~g~Y~   72 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAG--LIVI-------QTRTDTLE--TTVDIYNLQLSNITSETQTTVT   72 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECC--EEcc-------CCccEEEE--ecCCEEEEEEecCCcccCEEEE
Confidence            34455667899999999999999999999999843  2221       12222222  1234679999999999999999


Q ss_pred             Eee-cCCCCeeEEEEece
Q psy14080         90 CQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V  106 (113)
                      |.+ +..+..+..++|.|
T Consensus        73 C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          73 CTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEECCCCceeEEEEEeC
Confidence            999 56678888888875

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.65  E-value=2.8e-15  Score=93.69  Aligned_cols=86  Identities=14%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             CCcEEEEEEEccC---CCCEEEEEecCCCeEEE--ecc-eEE---c--CCCCEEEEEe-CCCCcEEEEEccCCCCCCEEE
Q psy14080         21 AVFSYSDKTVRDI---VKVRVSWVRRRDWHILT--SGV-LTY---T--NDARFQVIHT-DGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        21 G~~a~L~C~v~~~---~~~~V~W~k~~~~~~l~--~~~-~~~---~--~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      |++|+|+|.+...   ....|.|+|+....++.  ... ...   .  -.+|+.+... ...++++|+|.+++.+|+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999999733   23479999987433321  111 111   0  1257776431 235679999999999999999


Q ss_pred             EEeecCC-CCeeEEEEece
Q psy14080         89 ECQAQPY-TTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~~~-~~~s~~~~L~V  106 (113)
                      +|.+... ...+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999744 44566677765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=2.2e-15  Score=89.97  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.|.|+|.  +..+...    ..+.|+.+.      +.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~--g~~i~~~----~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   68 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSIN--GAPIEGT----DPDPRRHVS------SGALILTDVQPSDTAVYQCEARNRHGNLL   68 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEEC--CEECCCC----CCCceEEee------CCEEEECCCChhhCEEEEEEEECCCCeEE
Confidence            78999999999999999999983  3333211    123455542      458999999999999999999 5567888


Q ss_pred             EEEEecee
Q psy14080        100 HSQNAPGL  107 (113)
Q Consensus       100 ~~~~L~V~  107 (113)
                      ..++|.|.
T Consensus        69 ~~~~l~V~   76 (76)
T cd05867          69 ANAHVHVV   76 (76)
T ss_pred             EEEEEEEC
Confidence            88888873

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.65  E-value=3.9e-15  Score=93.45  Aligned_cols=95  Identities=20%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             ecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCC---CeEEE--ecc---eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         12 FGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRD---WHILT--SGV---LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~---~~~l~--~~~---~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ....+.+.+|++|.|+|.+. ......+.|+|+..   ...+.  ...   ...  ...+|+.+..+...++++|+|+++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            45668899999999999999 55667999999764   22222  111   111  225788887767778999999999


Q ss_pred             CCCCCEEEEEeecCC--CCeeEEEEece
Q psy14080         81 QKRDNGTYECQAQPY--TTTSHSQNAPG  106 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~--~~~s~~~~L~V  106 (113)
                      +.+|+|.|+|++...  ........|.|
T Consensus        87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999999654  34456666655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.65  E-value=4.4e-15  Score=93.80  Aligned_cols=89  Identities=16%  Similarity=0.006  Sum_probs=66.2

Q ss_pred             EeecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC---CCCcEEEEEccCCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD---GSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~~~D~   85 (113)
                      ...++++.+.+|+++.|.|.+.+ .|.+.+.|+|.  +..+.       .+.+..+....   .....+|.|.+++++|+
T Consensus         7 ~~~~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd--g~~i~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   77 (101)
T cd04975           7 PEQNTTIFVNLGENLNLVVEVEAYPPPPHINWTYD--NRTLT-------NKLTEIVTSENESEYRYVSELKLVRLKESEA   77 (101)
T ss_pred             cCCCceEEEECCCCEEEEEEEEecCCCCccEEEeC--CeeCC-------CCcceeEEEeccCcceEEEEEEEeecCHhhC
Confidence            34567789999999999999999 88899999983  43332       12232222110   01246899999999999


Q ss_pred             EEEEEee-cCCCCeeEEEEecee
Q psy14080         86 GTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        86 G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      |.|+|.+ +..+..+..+.|.|.
T Consensus        78 G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          78 GTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             eeEEEEEECCCccEEEEEEEEEE
Confidence            9999999 566888888888874

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.65  E-value=2.1e-15  Score=90.36  Aligned_cols=74  Identities=20%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      ++|.|.+.+.|.|.|.|+|.+  ..+.      ....|+.+.. .+.+..+|.|.+++++|+|.|.|.+ +..+..+..+
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~--~~l~------~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a   71 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKEN--ESLT------HNTDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA   71 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECC--EECC------CCCCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence            579999999999999999843  2321      1246777753 2223458999999999999999999 5678888888


Q ss_pred             Eece
Q psy14080        103 NAPG  106 (113)
Q Consensus       103 ~L~V  106 (113)
                      .|.|
T Consensus        72 ~L~V   75 (75)
T cd05893          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            8876

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.64  E-value=7.3e-16  Score=95.05  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      |++|+|.|.+.+.|.|.|.|+|..  .+..+..+     ..+++.+...     .......|.|.+++.+|+|.|.|.+ 
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPD-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG   75 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCC-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence            789999999999999999999953  12211111     1122222211     1123468999999999999999999 


Q ss_pred             cCCCCeeEEEEecee
Q psy14080         93 QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~  107 (113)
                      +..+..+..+.|.|+
T Consensus        76 N~~G~~~~sa~L~V~   90 (90)
T cd04974          76 NSIGPSHHSAWLTVL   90 (90)
T ss_pred             cccCcccCCEEEEeC
Confidence            566888888999884

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=1e-14  Score=90.90  Aligned_cols=86  Identities=19%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      +..+..|++++|.|.+.+.|.+.|.|+|..  ..+.....  ..+.|+.+..  .....+|.|++++.+|+|.|.|.+ +
T Consensus        11 ~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~--~~~~~~~~--~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N   84 (97)
T cd05869          11 QTAMELEEQITLTCEASGDPIPSITWRTST--RNISSEEK--TLDGHIVVRS--HARVSSLTLKYIQYTDAGEYLCTASN   84 (97)
T ss_pred             ceEEEcCCCEEEEEEeeEeCCCEEEEEECC--ccccCCcc--ccCccEEEEc--CccEEEEEEecCccCcCEEEEEEEec
Confidence            333445899999999999999999999843  22211110  1245666542  234569999999999999999999 5


Q ss_pred             CCCCeeEEEEece
Q psy14080         94 PYTTTSHSQNAPG  106 (113)
Q Consensus        94 ~~~~~s~~~~L~V  106 (113)
                      ..+..+..++|.|
T Consensus        85 ~~G~~~~~~~l~v   97 (97)
T cd05869          85 TIGQDSQSMYLEV   97 (97)
T ss_pred             CCCCeeEEEEEEC
Confidence            6688888888876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.64  E-value=2e-15  Score=94.10  Aligned_cols=82  Identities=11%  Similarity=0.027  Sum_probs=60.6

Q ss_pred             ceEEEecCCcEEEEEEEcc-----CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRD-----IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-----~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++..+.+|+++.|.|.+.+     .+.+.|.|||.+....+..     ..+.|+...      ..+|.|.+++++|+|.|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~~------~~~L~I~~~~~~DsG~Y   75 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMHQQ------KDLLWFLPAALEDSGLY   75 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceeeec------CCeEEEccCCcccCeEE
Confidence            4567889999999999998     6788999999753221110     123454332      45899999999999999


Q ss_pred             EEeec-CCCCeeEEEEece
Q psy14080         89 ECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~-~~~~~s~~~~L~V  106 (113)
                      +|.+. ..+..+..++|.|
T Consensus        76 ~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          76 TCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             EEEEcCCCccEEEEEEEEC
Confidence            99995 4567777788875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=4.3e-15  Score=89.52  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=58.2

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+.++.+|+++.|.|.+.+. .+.|.|+|..  ..|       ..+.|+.+.      ..+|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g--~~l-------~~~~~~~~~------~~~L~I~~~~~~DsG~Y~C~a~   65 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDG--VQL-------GENNRTRIT------GEEVQIKDAVPRDSGLYACVTS   65 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCC--cCC-------CCCceEEEe------CCEEEECCCChhhCEEEEEEEe
Confidence            35678899999999999986 5689999843  222       235677664      2289999999999999999994


Q ss_pred             -CCCCeeEEEEece
Q psy14080         94 -PYTTTSHSQNAPG  106 (113)
Q Consensus        94 -~~~~~s~~~~L~V  106 (113)
                       ..+..+..+.|.|
T Consensus        66 n~~g~~~~~~~v~V   79 (79)
T cd04973          66 SPSGSDTTYFSVNV   79 (79)
T ss_pred             CCCCcccEEEEEeC
Confidence             4566666666654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.63  E-value=6.9e-15  Score=89.12  Aligned_cols=82  Identities=13%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ...+.+|+++.|.|.+.+.+.+.|.|||..  ..+..+.    ...++...    ...++|.|.+++++|+|.|.|.+ +
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g--~~l~~~~----~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNG--KEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVEN   72 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECC--EECCCCC----ceeeeEEe----CCceEEEEccCCcccCEEEEEEEEe
Confidence            356888999999999999999999999843  2221110    01122222    24779999999999999999999 5


Q ss_pred             CCCCeeEEEEece
Q psy14080         94 PYTTTSHSQNAPG  106 (113)
Q Consensus        94 ~~~~~s~~~~L~V  106 (113)
                      ..+..+..+.|.|
T Consensus        73 ~~G~~~~~~~l~v   85 (85)
T cd05857          73 EYGSINHTYHLDV   85 (85)
T ss_pred             CCCEEEEEEEEEC
Confidence            6688888888876

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=4.9e-15  Score=90.38  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+.++.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ..+.|+...      +..|.|.+++.+|+|.|.|.
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g--~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~   69 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNG--QPL-------ASENRIEVE------AGDLRITKLSLSDSGMYQCV   69 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC--EEC-------CCCCeEEEe------CCEEEEeeCCHHHCEEEEEE
Confidence            455678899999999999999999999999843  222       234566653      33899999999999999999


Q ss_pred             ec-CCCCeeEEEEece
Q psy14080         92 AQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V  106 (113)
                      +. ..+..+..++|.|
T Consensus        70 a~N~~G~~~~~~~l~V   85 (85)
T cd05728          70 AENKHGTIYASAELAV   85 (85)
T ss_pred             EECCCCeEEEEEEEEC
Confidence            94 5577777788765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.63  E-value=8.2e-15  Score=87.58  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      +.|.|.+.+.|.+.|.|+|.  +..+..      ...|+.+.. .+.+..+|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus         1 v~L~C~v~G~P~P~v~W~k~--~~~i~~------~~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   71 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKN--NEMLTY------NTDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA   71 (75)
T ss_pred             CEEEEEEeecCCCeEEEEEC--CEECCC------CCCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence            47999999999999999984  333321      245777753 2334568999999999999999999 5678888888


Q ss_pred             Eece
Q psy14080        103 NAPG  106 (113)
Q Consensus       103 ~L~V  106 (113)
                      .|.|
T Consensus        72 ~l~v   75 (75)
T cd05744          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            8876

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.62  E-value=1.2e-14  Score=89.35  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=62.1

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC--CCCcEEEEEccCCCCCCEEEEEee-cCCCC
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD--GSDDWNLQIKFLQKRDNGTYECQA-QPYTT   97 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~   97 (113)
                      |++++|.|.+.+.+.+.+.|+|.+  ..+.      ....||.+....  .....+|.|.+++.+|+|.|+|.+ +..+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~--~~i~------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~   72 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKED--RIIN------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE   72 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCC--EECC------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence            789999999999988899998843  3331      123577765321  122368999999999999999999 56788


Q ss_pred             eeEEEEeceecc
Q psy14080         98 TSHSQNAPGLGD  109 (113)
Q Consensus        98 ~s~~~~L~V~g~  109 (113)
                      .+..+.|.|.+.
T Consensus        73 ~~~~~~L~V~~~   84 (88)
T cd05735          73 DRGIIQLTVQEP   84 (88)
T ss_pred             ceEEEEEEEeCC
Confidence            888999999753

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.62  E-value=6.6e-15  Score=87.22  Aligned_cols=72  Identities=22%  Similarity=0.322  Sum_probs=58.1

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.+.|+|..  ..+       ..++|+.+.     .+.+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~--~~~-------~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   66 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGT--ELL-------TNSSRICIW-----PDGSLEILNVTKSDEGKYTCFAENFFGKAN   66 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECC--EEc-------ccCCCEEEC-----CCCeEEEccCChhHCEEEEEEEECCCCceE
Confidence            789999999999999999999853  222       235677764     2347999999999999999999 5668888


Q ss_pred             EEEEece
Q psy14080        100 HSQNAPG  106 (113)
Q Consensus       100 ~~~~L~V  106 (113)
                      ..+.|.|
T Consensus        67 ~~~~l~V   73 (73)
T cd04969          67 STGSLSV   73 (73)
T ss_pred             EEEEEEC
Confidence            8888876

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.62  E-value=5.6e-15  Score=88.48  Aligned_cols=79  Identities=11%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      .+.+.+|+++.|.|.+.+.+.+.+.|+|.... +.        ...+...    ....++|.|.+++++|+|.|+|.+. 
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~-~~--------~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N   69 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKP-LT--------PTEIGES----RKKKWTLSLKNLKPEDSGKYTCHVSN   69 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcC-Cc--------CCcccee----cCceEEEEEccCChhhCEEEEEEEEc
Confidence            45677899999999999988899999985422 11        1111111    1246799999999999999999994 


Q ss_pred             CCCCeeEEEEece
Q psy14080         94 PYTTTSHSQNAPG  106 (113)
Q Consensus        94 ~~~~~s~~~~L~V  106 (113)
                      ..+..+..+.|.|
T Consensus        70 ~~G~~~~~~~v~v   82 (82)
T cd05856          70 RAGEINATYKVDV   82 (82)
T ss_pred             CCccEEEEEEEeC
Confidence            5677777777765

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.61  E-value=4.2e-15  Score=88.40  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=56.2

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      |.|.|.+.+.|.+.|.|+|.... .+..     ..+.|+.+..    ....|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~-~~~~-----~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~   70 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGT-DFPA-----ARERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANA   70 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCc-cCCc-----ccccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeE
Confidence            57999999999999999996432 1110     1345776542    2348999999999999999999 4567888889


Q ss_pred             Eecee
Q psy14080        103 NAPGL  107 (113)
Q Consensus       103 ~L~V~  107 (113)
                      .|.|+
T Consensus        71 ~l~V~   75 (75)
T cd05763          71 TLTVL   75 (75)
T ss_pred             EEEEC
Confidence            98874

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.60  E-value=5.2e-15  Score=91.08  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      |+++.|.|.+.+.|.+.|.|+|..  .+..+..+.     .++..+...     ......+|.|++++.+|+|.|.|.+ 
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDG-----LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAG   75 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCC-----CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEE
Confidence            789999999999999999999853  122221110     111222110     1123468999999999999999999 


Q ss_pred             cCCCCeeEEEEecee
Q psy14080         93 QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~  107 (113)
                      +..+..+..++|.|+
T Consensus        76 N~~G~~~~~a~L~V~   90 (90)
T cd05858          76 NSIGISHHSAWLTVL   90 (90)
T ss_pred             eCCCcccceEEEEEC
Confidence            667888888999884

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.60  E-value=2.7e-14  Score=87.32  Aligned_cols=81  Identities=15%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             CcEEEEEEEccCCCC--EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080         22 VFSYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT   98 (113)
Q Consensus        22 ~~a~L~C~v~~~~~~--~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~   98 (113)
                      ++++|.|.+.+.|.+  .+.|+|.  +..+...    ..+.||.... ......+|.|.+++.+|+|.|.|.+ +..+..
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~--g~~i~~~----~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~   73 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLD--DFPIDLD----KPNGHYRRME-VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA   73 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC--CeEcccc----CCCCcEEEEE-ecceEeEEEEccCChhhCeEEEEEEecCCCCE
Confidence            478999999998876  5799873  3333221    1244553321 1123569999999999999999999 566888


Q ss_pred             eEEEEeceecc
Q psy14080         99 SHSQNAPGLGD  109 (113)
Q Consensus        99 s~~~~L~V~g~  109 (113)
                      +..+.|.|.|.
T Consensus        74 ~~~~~L~V~~~   84 (85)
T cd05854          74 SASATLVVRGP   84 (85)
T ss_pred             EEEEEEEEECC
Confidence            99999999874

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.59  E-value=3e-14  Score=84.44  Aligned_cols=73  Identities=19%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             cEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080         23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS  101 (113)
Q Consensus        23 ~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~  101 (113)
                      ++.|.|.+.+.|.+.+.|+|..  ..+       ..++|+.+..  .....+|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g--~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDG--KPL-------KLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT   69 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECC--EEc-------CCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence            4789999999999999999843  222       2356777653  335679999999999999999999 566888888


Q ss_pred             EEece
Q psy14080        102 QNAPG  106 (113)
Q Consensus       102 ~~L~V  106 (113)
                      +.|.|
T Consensus        70 ~~l~V   74 (74)
T cd05748          70 INVKV   74 (74)
T ss_pred             EEEEC
Confidence            88875

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.59  E-value=2.3e-14  Score=90.44  Aligned_cols=88  Identities=15%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe----CCCCcEEEEEccCCCCCCE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT----DGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~----~~~~~~~L~I~~v~~~D~G   86 (113)
                      ..+.+.++..|+.+.|.|.+.+.|.+.|.|||.  +..|..       +.+......    ......+|+|.+++.+|+|
T Consensus         8 ~~~~~~~~~~~~~~~l~~~v~g~P~P~v~W~kd--g~~l~~-------~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G   78 (101)
T cd05859           8 TFGQLEFANLHEVKEFVVEVEAYPPPQIRWLKD--NRTLIE-------NLTEITTSEHNVQETRYVSKLKLIRAKEEDSG   78 (101)
T ss_pred             CCCceEEEecCCcEEEEEEEEEeCCCceEEEEC--CEECcC-------CcceEEeccccccceeeccEEEEeeCCHHHCE
Confidence            345678899999999999999999999999993  333321       222111100    0112358999999999999


Q ss_pred             EEEEee-cCCCCeeEEEEecee
Q psy14080         87 TYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        87 ~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      .|+|.+ +..+..+.++.|.|.
T Consensus        79 ~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          79 LYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEcCCceEEEEEEEEEE
Confidence            999999 566788888888874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=1.3e-14  Score=87.95  Aligned_cols=81  Identities=22%  Similarity=0.282  Sum_probs=60.7

Q ss_pred             cceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.++++.+|+++.|.|.+ .+.+.+.+.|+|..  ..+.      ..+.|+.+..     +.+|.|.+++.+|+|.|+|.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g--~~~~------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~   69 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDG--QPLN------LDNERVRIVD-----DGNLLIAEARKSDEGTYKCV   69 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECC--EECC------CCCCCEEEcc-----CCEEEEeECCcccCEEEEEE
Confidence            356788899999999998 67888899999843  2221      1255776642     45899999999999999999


Q ss_pred             ec-CCCC-eeEEEEece
Q psy14080         92 AQ-PYTT-TSHSQNAPG  106 (113)
Q Consensus        92 ~~-~~~~-~s~~~~L~V  106 (113)
                      +. ..+. .+..+.|.|
T Consensus        70 a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          70 ATNMVGERESAAARLSV   86 (86)
T ss_pred             EEeccCceeeeeEEEEC
Confidence            95 4443 467777765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=9.3e-15  Score=85.61  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=54.4

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      |+|.|.+.+.|.+.+.|+|.... +         ...|+.+.     .+.+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~-~---------~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   65 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGE-L---------PKGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASA   65 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCcc-C---------CCCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence            57999999999999999996421 1         24577765     2458999999999999999999 4567888888


Q ss_pred             Eece
Q psy14080        103 NAPG  106 (113)
Q Consensus       103 ~L~V  106 (113)
                      .|.|
T Consensus        66 ~l~V   69 (69)
T cd05725          66 SLTV   69 (69)
T ss_pred             EEEC
Confidence            8875

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.59  E-value=1.6e-14  Score=86.75  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.|.|+|.. .. +       ..+.|+.+..  ..+..+|+|++++.+|+|.|+|.+. ..+...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~-~~-~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNW-GH-V-------PDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECC-eE-C-------CCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence            789999999999999999999843 21 1       2356777653  3456799999999999999999994 555544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=99.59  E-value=2.9e-14  Score=89.66  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             cEEEEEEEccCC---CCEEEEEecCCC----eEE--Ee--cceEEcC-CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         23 FSYSDKTVRDIV---KVRVSWVRRRDW----HIL--TS--GVLTYTN-DARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        23 ~a~L~C~v~~~~---~~~V~W~k~~~~----~~l--~~--~~~~~~~-~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      +|+|+|.+....   ...|.|+|+..+    .+.  ..  +...+.. .+|..+..+...++.+|+|+|++.+|+|+|+|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999997554   348999998632    221  11  2222222 25666654445678899999999999999999


Q ss_pred             eecCC--CCeeEEEEecee
Q psy14080         91 QAQPY--TTTSHSQNAPGL  107 (113)
Q Consensus        91 ~~~~~--~~~s~~~~L~V~  107 (113)
                      .+.+.  +..+..+.|.|.
T Consensus        82 ~v~~~p~g~~~~~~~L~V~  100 (100)
T cd05888          82 RVITFPAGNFEAELVLTVW  100 (100)
T ss_pred             EEEeCCCCCeeeEEEEEeC
Confidence            99754  455777777763

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.58  E-value=1.7e-14  Score=85.81  Aligned_cols=72  Identities=21%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCC-eeEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTT-TSHS  101 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~-~s~~  101 (113)
                      |+|.|.+.+.|.+.|.|||..  ..+..     ..+.|+...     .+.+|.|.+++.+|+|.|.|.+. ..+. .+..
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~--~~~~~-----~~~~~~~~~-----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~   68 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDF--LPVDT-----TSNGRIKQL-----RSGALQIENSEESDQGKYECVATNSAGTRYSAP   68 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECC--EECcc-----CCCCCEEEc-----CCcEEEECCCChhhCEEEEEEEECCCCceEccc
Confidence            579999999999999999953  22210     135677764     24479999999999999999995 4454 5788


Q ss_pred             EEecee
Q psy14080        102 QNAPGL  107 (113)
Q Consensus       102 ~~L~V~  107 (113)
                      ++|.|+
T Consensus        69 a~l~v~   74 (74)
T cd05738          69 ANLYVR   74 (74)
T ss_pred             EEEEEC
Confidence            888875

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.58  E-value=2.5e-14  Score=84.65  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.|.|+|.+ ...+.       ...|+...     ...+|.|.+++.+|+|.|.|.+ +..+..+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~-~~~~~-------~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   67 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPD-GKLIS-------NSSRTLVY-----DNGTLDILITTVKDTGSFTCIASNAAGEAT   67 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCC-CEEec-------CCCeEEEe-----cCCEEEEEECChhhCEEEEEEEECCCCeEE
Confidence            789999999999999999999754 33332       24455543     2348999999999999999999 4567778


Q ss_pred             EEEEece
Q psy14080        100 HSQNAPG  106 (113)
Q Consensus       100 ~~~~L~V  106 (113)
                      ..+.|.|
T Consensus        68 ~~~~l~v   74 (74)
T cd05764          68 ATVELHI   74 (74)
T ss_pred             EEEEEEC
Confidence            8888765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.58  E-value=2.2e-14  Score=88.06  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=60.2

Q ss_pred             CcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe
Q psy14080         22 VFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT   98 (113)
Q Consensus        22 ~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~   98 (113)
                      ++++|.|.++..  ....+.|+|  +++.+.++    ....||.....+ ....+|.|+|++.+|+|.|+|.+. .....
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~--dg~~i~~~----~~~~~~~~~~~~-~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~   73 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSF--NGHLIDFQ----KDGDHFERVGGQ-DSAGDLMIRSIQLKHAGKYVCMVQTSVDKL   73 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEE--CCEECccc----CCCccEEEeccC-CCCCcEEEecCCHHHCEEEEEEEEcccCce
Confidence            579999999864  467899987  45555322    124577764211 235599999999999999999995 45788


Q ss_pred             eEEEEeceecc
Q psy14080         99 SHSQNAPGLGD  109 (113)
Q Consensus        99 s~~~~L~V~g~  109 (113)
                      +..+.|.|.|.
T Consensus        74 ~a~a~L~V~~p   84 (85)
T cd05853          74 SAAADLIVRGP   84 (85)
T ss_pred             EEEEEEEEecC
Confidence            99999999874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.58  E-value=2.4e-14  Score=85.68  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |++++|.|.+.+.|.+.|.|+|.  +..+...    ..+.++..      +...|.|.+++++|+|.|.|.+ +..+..+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~--g~~i~~~----~~~~~~~~------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~   68 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTN--GVPIEIA----PTDPSRKV------DGDTIIFSKVQERSSAVYQCNASNEYGYLL   68 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEEC--CEEcccc----CCCceEEe------cCCEEEECCCCHhhCEEEEEEEEcCCCEEE
Confidence            78999999999999999999983  3333211    01112221      1237999999999999999999 5678888


Q ss_pred             EEEEecee
Q psy14080        100 HSQNAPGL  107 (113)
Q Consensus       100 ~~~~L~V~  107 (113)
                      ..+.|.|+
T Consensus        69 ~~~~l~v~   76 (76)
T cd05868          69 ANAFVNVL   76 (76)
T ss_pred             EEEEEEeC
Confidence            89999885

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.58  E-value=9.6e-14  Score=89.74  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             ceEEEecCCcEEEEEEEccC----CCCEEEE-EecCC-C---eEEEec-ceEEc-C----CCCEEEEEeCCCCcEEEEEc
Q psy14080         14 QISTGFLAVFSYSDKTVRDI----VKVRVSW-VRRRD-W---HILTSG-VLTYT-N----DARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~----~~~~V~W-~k~~~-~---~~l~~~-~~~~~-~----~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ..+.+..|++|+|+|.+...    ....|.| |+... .   .++... ...+. .    .+|+....+...++.+|.|+
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            45678889999999999753    2458999 55432 1   244432 22222 1    24887776666788999999


Q ss_pred             cCCCCCCEEEEEeecCCCC---eeEEEEece
Q psy14080         79 FLQKRDNGTYECQAQPYTT---TSHSQNAPG  106 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V  106 (113)
                      |++.+|+|+|.|.+.+.|.   ....+.|.|
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            9999999999999975542   335566654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.58  E-value=1.1e-14  Score=89.30  Aligned_cols=81  Identities=19%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCe---EEEe---cceEE-c--CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWH---ILTS---GVLTY-T--NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~---~l~~---~~~~~-~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      |++|+|+|.+.......|.|+|.....   .+..   ..... .  -.+|+.+.     .+++|+|++++++|+|.|+|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~c~   75 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYTLQ   75 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEEEE
Confidence            789999999987667799999987432   1110   11111 1  13566654     248999999999999999999


Q ss_pred             ecCCC--CeeEEEEece
Q psy14080         92 AQPYT--TTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~--~~s~~~~L~V  106 (113)
                      +....  +....+.|.|
T Consensus        76 v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          76 IISTNGVTENAKFFLRV   92 (92)
T ss_pred             EEcCCCcEEEEEEEEEC
Confidence            96543  4456666654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.57  E-value=9.3e-14  Score=83.45  Aligned_cols=83  Identities=12%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      +.+.+.+|+++.|.|.+.+.+.+.|.|+|..  ..+.       .+.++.... .....+.|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~--~~~~-------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~   71 (85)
T cd05729           2 RLHAVPAGSTVRLKCPASGNPRPTITWLKDG--KPFK-------KEHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVE   71 (85)
T ss_pred             ceeEecCCCcEEEEEEcCCCCCCeEEEEECC--EECc-------ccCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEE
Confidence            3467788999999999998888899999853  2221       233333221 12346799999999999999999994


Q ss_pred             -CCCCeeEEEEece
Q psy14080         94 -PYTTTSHSQNAPG  106 (113)
Q Consensus        94 -~~~~~s~~~~L~V  106 (113)
                       ..+..+.++.|.|
T Consensus        72 n~~g~~~~~~~l~v   85 (85)
T cd05729          72 NKYGSINHTYKVDV   85 (85)
T ss_pred             ECCceEEEEEEEeC
Confidence             4566777777764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.57  E-value=2.7e-14  Score=87.60  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .+.+++.+|+++.|+|.+.+ +.+.+.|||++.....  ..   ....|+...      ...|.|.+++++|+|.|+|.+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~--~~---~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a   70 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQR--KE---EPEERLLVT------EDGLLIRSVSPADAGVYTCQS   70 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCccccc--cc---CcCceEEEc------CCCEEEccCCHHHCEEEEEEE
Confidence            35678899999999999876 7789999997532111  00   012355443      235999999999999999999


Q ss_pred             cCC--CCeeEEEEeceecc
Q psy14080         93 QPY--TTTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~--~~~s~~~~L~V~g~  109 (113)
                      ...  ...+..+.|.|..+
T Consensus        71 ~~~~~~~~~~~~~l~V~~~   89 (89)
T cd04979          71 VEHGFKQTLATYSLNVLEV   89 (89)
T ss_pred             ecCccceeEeEEEEEEecC
Confidence            533  45677788888753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.56  E-value=4.2e-14  Score=83.49  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             cEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080         23 FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS  101 (113)
Q Consensus        23 ~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~  101 (113)
                      +++|.|.+.+.|.+.|.|+|.. ..+.        ...|+.+..     +..|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g-~~~~--------~~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   66 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNG-DMVI--------PSDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQAS   66 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECC-eECC--------CCCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence            4789999999999999999843 2221        345676652     336889999999999999999 566888888


Q ss_pred             EEece
Q psy14080        102 QNAPG  106 (113)
Q Consensus       102 ~~L~V  106 (113)
                      +.|.|
T Consensus        67 ~~L~V   71 (71)
T cd05723          67 AQLII   71 (71)
T ss_pred             EEEEC
Confidence            88875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=2.6e-14  Score=85.85  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCC-eeEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTT-TSHS  101 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~-~s~~  101 (113)
                      |+|.|.+.+.|.+.|.|+|..+... .........++|+.+.     .+.+|.|.+++.+|+|.|.|.+. ..+. .++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~-~~~~~~~~~~~r~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~   74 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGH-PQHTHTCCLAGRIQLL-----SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKS   74 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccc-cccccccccCCCEEEe-----cCCeEEECcCCcccCEEEEEEEEeCCCCCCceE
Confidence            5799999999999999999753211 1000011245787764     35689999999999999999994 4443 4677


Q ss_pred             EEece
Q psy14080        102 QNAPG  106 (113)
Q Consensus       102 ~~L~V  106 (113)
                      +.|.|
T Consensus        75 ~~l~~   79 (79)
T cd05734          75 MVLTV   79 (79)
T ss_pred             EEEeC
Confidence            77765

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=99.56  E-value=8.6e-14  Score=86.34  Aligned_cols=85  Identities=13%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             CcEEEEEEEccCC---CCEEEEEecCCC--eEEE-ec---ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         22 VFSYSDKTVRDIV---KVRVSWVRRRDW--HILT-SG---VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        22 ~~a~L~C~v~~~~---~~~V~W~k~~~~--~~l~-~~---~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ++|+|+|.+....   ...|.|+|+..+  ..+. ..   ...+..  ..|..+.. ...++.+|+|++++.+|+|.|+|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN-SSLEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC-CCCCceEEEEccCCcccCEEEEE
Confidence            5799999998654   347999998742  2211 11   111112  24554442 12268899999999999999999


Q ss_pred             eecCC--CCeeEEEEecee
Q psy14080         91 QAQPY--TTTSHSQNAPGL  107 (113)
Q Consensus        91 ~~~~~--~~~s~~~~L~V~  107 (113)
                      .+...  +.......|.|+
T Consensus        80 ~v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          80 EFATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEEeCCCCcEEEEEEEEeC
Confidence            99654  466777788775

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.56  E-value=7.6e-14  Score=86.08  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=62.1

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEc--cCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK--FLQK   82 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~--~v~~   82 (113)
                      |+.++ ...+++++.+|+++.|.|.+.+.+.+.|.|||.  +..+..+.  .....+....  .++....+.|.  +++.
T Consensus         1 ~P~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~--g~~l~~~~--~~~~~~~~~~--~~~~~~~~~i~~~~~~~   73 (100)
T cd07693           1 PPRIV-EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN--GQPLETDK--DDPRSHRIVL--PSGSLFFLRVVHGRKGR   73 (100)
T ss_pred             CCeEE-ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC--CEECcccc--CCCCcceEEe--cCCcEEEEEeeccCCCc
Confidence            33444 446778999999999999999999999999984  33322110  0011222222  22233344443  4479


Q ss_pred             CCCEEEEEeec-CCCC-eeEEEEecee
Q psy14080         83 RDNGTYECQAQ-PYTT-TSHSQNAPGL  107 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~-~s~~~~L~V~  107 (113)
                      +|+|.|+|.+. ..+. .+..+.|.|.
T Consensus        74 ~D~G~Y~C~a~N~~G~~~s~~~~l~v~  100 (100)
T cd07693          74 SDEGVYVCVAHNSLGEAVSRNASLEVA  100 (100)
T ss_pred             CcCEEEEEEEEccccceecceEEEEeC
Confidence            99999999994 5565 6788888773

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.56  E-value=2.1e-13  Score=85.13  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCC--CCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG--SDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~v~   81 (113)
                      |+.|..  ...+.+.+|+++.|.|.+.+.|.+ .|.|++.+  ..+..     ..+.||.+.....  ....+|+|.+++
T Consensus         2 pp~i~~--~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~--~~i~~-----~~~~r~~i~~~~~~~~~~s~L~I~~v~   72 (98)
T cd05758           2 PPIITS--EATQYAILGDKGRVECFIFSTPPPDRIVWTWKE--NELES-----GSSGRYTVETDPSPGGVLSTLTISNTQ   72 (98)
T ss_pred             CCeEcC--CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECC--EEccC-----CCCCCEEEEEecCCCceEEEEEECCcc
Confidence            455532  456778999999999999999888 69998743  23221     1246888764211  223589999999


Q ss_pred             CCC-CEEEEEee-cCCCCeeEEEEe
Q psy14080         82 KRD-NGTYECQA-QPYTTTSHSQNA  104 (113)
Q Consensus        82 ~~D-~G~Y~C~~-~~~~~~s~~~~L  104 (113)
                      .+| +|.|.|.+ +..+..+..+.|
T Consensus        73 ~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          73 ESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             ccccceeEEEEEEcCCCcccEEEEe
Confidence            955 99999999 566777777776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=1.2e-13  Score=83.92  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             CcEEEEEEEccCCCC--EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe
Q psy14080         22 VFSYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT   98 (113)
Q Consensus        22 ~~a~L~C~v~~~~~~--~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~   98 (113)
                      ++++|.|.+.+.+.+  .+.|+|.  +..+....    .+.+|+... ......+|.|.+++.+|+|.|.|.+. ..+..
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~--g~~i~~~~----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~   73 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFN--GVPIDFDK----DGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL   73 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC--CeEeeccC----CCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence            579999999988876  5689873  44432211    233443221 11245689999999999999999995 45778


Q ss_pred             eEEEEeceecc
Q psy14080         99 SHSQNAPGLGD  109 (113)
Q Consensus        99 s~~~~L~V~g~  109 (113)
                      +..+.|.|.|.
T Consensus        74 ~~~~~l~V~~p   84 (85)
T cd04970          74 SASADLIVRGP   84 (85)
T ss_pred             EEEEEEEEECC
Confidence            89999999874

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=99.55  E-value=7.9e-14  Score=87.00  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             CCcEEEEEEEccCCC-CEEEEEecCC--C-eEEEec---ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         21 AVFSYSDKTVRDIVK-VRVSWVRRRD--W-HILTSG---VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        21 G~~a~L~C~v~~~~~-~~V~W~k~~~--~-~~l~~~---~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      |++|+|+|.+..... ..|.|+|..+  + .+....   ......  .+|+.+. ..+.++.+|+|++++.+|+|+|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence            789999999875432 3699999653  2 222221   111111  2465554 3556788999999999999999999


Q ss_pred             ecCCC--CeeEEEEece
Q psy14080         92 AQPYT--TTSHSQNAPG  106 (113)
Q Consensus        92 ~~~~~--~~s~~~~L~V  106 (113)
                      +...|  ..+..+.|.|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            97655  5567777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>smart00406 IGv Immunoglobulin V-Type

Probab=99.55  E-value=3.9e-14  Score=84.29  Aligned_cols=70  Identities=26%  Similarity=0.313  Sum_probs=51.3

Q ss_pred             cEEEEEEEccCCC--CEEEEEecCC---CeEEEec---ceEE---cCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         23 FSYSDKTVRDIVK--VRVSWVRRRD---WHILTSG---VLTY---TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        23 ~a~L~C~v~~~~~--~~V~W~k~~~---~~~l~~~---~~~~---~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +|.|+|.++....  ..|.|||+..   ...+...   ...+   ...+||.+......+.++|+|++++++|+|+|+|+
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4889999987654  3899999874   2333321   1122   23579988765457889999999999999999997


Q ss_pred             e
Q psy14080         92 A   92 (113)
Q Consensus        92 ~   92 (113)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            5

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.54  E-value=5.8e-14  Score=83.27  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=55.5

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |+++.|.|.+.+.|.+.|.|+|.  +..+...      +......    .....|.|.+++.+|+|.|+|.+ +..+..+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~--g~~~~~~------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~   68 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLN--GVPIEEL------PPDPRRR----VDGGTLILSNVQPNDTAVYQCNASNVHGYLL   68 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEEC--CEECCCC------CCcceEE----ccCCEEEECCCChhhCEEEEEEEEccCCeEE
Confidence            78999999999999999999973  2222111      1111111    13468999999999999999999 5567888


Q ss_pred             EEEEecee
Q psy14080        100 HSQNAPGL  107 (113)
Q Consensus       100 ~~~~L~V~  107 (113)
                      ..++|.|+
T Consensus        69 ~~~~l~V~   76 (76)
T cd04978          69 ANAFVHVV   76 (76)
T ss_pred             EeEEEEEC
Confidence            88898874

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.54  E-value=7.3e-14  Score=83.73  Aligned_cols=73  Identities=15%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCe--eE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTT--SH  100 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~--s~  100 (113)
                      |+|.|.+.+.|.+.|.|||..  ..+.      ....++.+..    +..+|.|.+++++|+|.|.|.+. ..+..  +.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g--~~l~------~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~   68 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDG--TPLS------DGQGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQ   68 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECC--EECC------CCCccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCc
Confidence            579999999999999999953  2231      1234565542    34599999999999999999994 55544  45


Q ss_pred             EEEeceec
Q psy14080        101 SQNAPGLG  108 (113)
Q Consensus       101 ~~~L~V~g  108 (113)
                      .+.|.|..
T Consensus        69 ~~~l~v~d   76 (77)
T cd05760          69 NFTLSIID   76 (77)
T ss_pred             eEEEEEec
Confidence            67777654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=8.9e-14  Score=82.08  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      +.|.|.+.+.|.+.|.|+|.+.. +.         ..|....    ....+|+|.+++.+|+|.|.|.+ +..+..+..+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~-~~---------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   66 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGP-LS---------PNRTKKL----NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY   66 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcC-CC---------CCceeEE----cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence            46999999999999999986422 11         1222222    13569999999999999999999 5668888888


Q ss_pred             Eecee
Q psy14080        103 NAPGL  107 (113)
Q Consensus       103 ~L~V~  107 (113)
                      .|.|+
T Consensus        67 ~l~Ve   71 (71)
T cd05876          67 TVTVE   71 (71)
T ss_pred             EEEEC
Confidence            88875

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=99.51  E-value=2.1e-13  Score=87.39  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             cCCcEEEEEEEccC-------CCCEEEEEecCC-----Ce-EEE-ecceE-Ec--CCCCEEEEEe-CCCCcEEEEEccCC
Q psy14080         20 LAVFSYSDKTVRDI-------VKVRVSWVRRRD-----WH-ILT-SGVLT-YT--NDARFQVIHT-DGSDDWNLQIKFLQ   81 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-------~~~~V~W~k~~~-----~~-~l~-~~~~~-~~--~~~R~~~~~~-~~~~~~~L~I~~v~   81 (113)
                      .|++|+|+|.+.-.       ..+.|.|+|+.+     .. ++. .+... ..  -.+|+.+..+ .+.++.+|+|+|++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            47899999997632       247899999842     11 222 22221 11  1358777532 23578899999999


Q ss_pred             CCCCEEEEEeecC-CCCeeEEEEeceecc
Q psy14080         82 KRDNGTYECQAQP-YTTTSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~~~-~~~~s~~~~L~V~g~  109 (113)
                      .+|+|+|.|.+.. ....+..+.|.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~gv  109 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVTGV  109 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEEEE
Confidence            9999999999964 346678899999885

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=1.3e-13  Score=80.83  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=52.3

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      +.|.|.+.+.|.+.|.|+|.  +..+       ....|+.+.     .+.+|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus         1 v~L~C~~~g~P~p~i~W~k~--g~~~-------~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   66 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKD--GVQV-------TESGKFHIS-----PEGYLAIRDVGVADQGRYECVARNTIGYASVSM   66 (69)
T ss_pred             CEeEecceEeCCCEEEEEEC--CEEC-------CCCCCEEEC-----CCCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence            47999999999999999983  2222       234677664     2448999999999999999999 5567777777


Q ss_pred             Ee
Q psy14080        103 NA  104 (113)
Q Consensus       103 ~L  104 (113)
                      +|
T Consensus        67 ~L   68 (69)
T cd05746          67 VL   68 (69)
T ss_pred             Ee
Confidence            76

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.50  E-value=2.6e-13  Score=82.46  Aligned_cols=80  Identities=16%  Similarity=0.087  Sum_probs=58.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      |....+..+.+.+|++++|.|.+.+ .+.+.+.|+|++..  +         ..+..      ..+.+|.|.+++++|+|
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~--~---------~~~~~------~~~~~L~I~~v~~~DsG   65 (85)
T cd05754           3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG--L---------PSRAM------DFNGILTIRNVQLSDAG   65 (85)
T ss_pred             EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc--C---------CCccc------ccCCEEEECCCCHHHCE
Confidence            4445566788999999999999974 57789999997532  1         11111      12458999999999999


Q ss_pred             EEEEeec-CCCCeeEEEEe
Q psy14080         87 TYECQAQ-PYTTTSHSQNA  104 (113)
Q Consensus        87 ~Y~C~~~-~~~~~s~~~~L  104 (113)
                      .|+|.+. ..+..+..+.|
T Consensus        66 ~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          66 TYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EEEEEEeccCCeEeEEEEE
Confidence            9999994 45666666654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.50  E-value=4.9e-13  Score=82.87  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccC-----CCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFL-----QKRDN   85 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-----~~~D~   85 (113)
                      ..+.+.++.+|+++.|.|.+.+.+.+.+.|+|.  +..+..     ..+.|+.+.     .+.+|.|.++     ..+|+
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~--g~~l~~-----~~~~~~~~~-----~~~~l~i~~v~~~~~~~~D~   71 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD--GVLLNL-----VSDERRQQL-----PNGSLLITSVVHSKHNKPDE   71 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC--CeECcc-----ccCcceEEc-----cCCeEEEeeeeccCCCCCcC
Confidence            345667888999999999999999999999983  333321     123345443     2346777777     58999


Q ss_pred             EEEEEeec-C-CCCe-eEEEEece
Q psy14080         86 GTYECQAQ-P-YTTT-SHSQNAPG  106 (113)
Q Consensus        86 G~Y~C~~~-~-~~~~-s~~~~L~V  106 (113)
                      |.|.|.+. . .+.. ++.+.|.|
T Consensus        72 G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          72 GFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEEEEEECCccCcEEEeeeEEeC
Confidence            99999995 4 4554 77888765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>smart00410 IG_like Immunoglobulin like

Probab=99.50  E-value=1.2e-12  Score=77.07  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+.+.+|+++.|.|.+.+.+...+.|++. +...+.       .++|+.....  ....+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~v~-------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKLLA-------ESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEEcC-------CCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEE
Confidence            346788999999999999887889999986 222221       3567776642  236799999999999999999996


Q ss_pred             -CCCCeeEEEEece
Q psy14080         94 -PYTTTSHSQNAPG  106 (113)
Q Consensus        94 -~~~~~s~~~~L~V  106 (113)
                       ........++|.|
T Consensus        72 ~~~~~~~~~~~l~V   85 (86)
T smart00410       72 NSSGSASSTTTLTV   85 (86)
T ss_pred             cCCCeEEEEEEEEE
Confidence             4444555577766

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.50  E-value=1.2e-12  Score=77.07  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+.+.+|+++.|.|.+.+.+...+.|++. +...+.       .++|+.....  ....+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~v~-------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKLLA-------ESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEEcC-------CCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEE
Confidence            346788999999999999887889999986 222221       3567776642  236799999999999999999996


Q ss_pred             -CCCCeeEEEEece
Q psy14080         94 -PYTTTSHSQNAPG  106 (113)
Q Consensus        94 -~~~~~s~~~~L~V  106 (113)
                       ........++|.|
T Consensus        72 ~~~~~~~~~~~l~V   85 (86)
T smart00409       72 NSSGSASSTTTLTV   85 (86)
T ss_pred             cCCCeEEEEEEEEE
Confidence             4444555577766

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.49  E-value=2.2e-13  Score=80.10  Aligned_cols=65  Identities=14%  Similarity=0.169  Sum_probs=49.2

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      ++|.|.+.+.|.+.+.|||.  +..+.         .|        .....|.|.+++.+|+|.|+|.+ +..+..++..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kd--g~~l~---------~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~   61 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKD--GKLIS---------GK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI   61 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEEC--CEECc---------cc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence            47999999999999999983  33331         11        12459999999999999999999 4557666666


Q ss_pred             Eecee
Q psy14080        103 NAPGL  107 (113)
Q Consensus       103 ~L~V~  107 (113)
                      .|.|.
T Consensus        62 ~~~l~   66 (67)
T cd05863          62 SLELI   66 (67)
T ss_pred             EEEEE
Confidence            66553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.49  E-value=2.1e-13  Score=80.64  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s~~~  102 (113)
                      +.|.|.+.+.|.+.+.|||.  +..+.       .+.|+..      ...+|.|.+++.+|+|.|+|.+. ..+..+..+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~--g~~l~-------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~   65 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKN--GKLIS-------EKNRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL   65 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEEC--CEECC-------CCCEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence            46999999999999999983  33332       2234432      24689999999999999999994 556555555


Q ss_pred             Eece
Q psy14080        103 NAPG  106 (113)
Q Consensus       103 ~L~V  106 (113)
                      .+.|
T Consensus        66 ~~~~   69 (71)
T cd04976          66 TFTL   69 (71)
T ss_pred             EEEE
Confidence            5544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.49  E-value=4e-13  Score=81.92  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC-C-
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY-T-   96 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~-   96 (113)
                      |++++|.|.+.+.+.+.+.|++....  ..+.       ...+..+.  ......+|.|.+++.+|+|.|.|.+... . 
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~   71 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-------EVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQD   71 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCce-------EEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccC
Confidence            78999999999988889999874321  1110       00111111  1123569999999999999999999542 2 


Q ss_pred             -CeeEEEEecee
Q psy14080         97 -TTSHSQNAPGL  107 (113)
Q Consensus        97 -~~s~~~~L~V~  107 (113)
                       ..+..++|.|.
T Consensus        72 ~~~~~sv~i~V~   83 (84)
T cd05861          72 QKAFKKVNITVH   83 (84)
T ss_pred             cceeEEEEEEEe
Confidence             56778888874

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.48  E-value=8.1e-13  Score=82.12  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             ecceEEEe---cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEE
Q psy14080         12 FGQISTGF---LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGT   87 (113)
Q Consensus        12 ~~~~~tv~---~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~   87 (113)
                      .+.++.+.   +|++++|.|.+.+.+.+.|.|+|.  +..+..     ..+.|+.+.      +.+|.|.++. .+|+|.
T Consensus         7 ~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~--g~~l~~-----~~~~~~~~~------~g~L~i~~~~~~~D~G~   73 (94)
T cd05848           7 EPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN--GTEIDT-----ESDYRYSLI------DGNLIISNPSEVKDSGR   73 (94)
T ss_pred             CCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC--CeECcc-----CCCceEEee------CCeEEEccCCccCcCEE
Confidence            34444443   579999999999999999999983  333321     123455443      3489999985 799999


Q ss_pred             EEEeec-CCCCe-eEEEEe
Q psy14080         88 YECQAQ-PYTTT-SHSQNA  104 (113)
Q Consensus        88 Y~C~~~-~~~~~-s~~~~L  104 (113)
                      |.|.+. ..+.. ++.+.|
T Consensus        74 Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          74 YQCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEEEcCCCeEEeccEEE
Confidence            999994 44544 555555

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=1.9e-13  Score=79.96  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      ++|.|.+.+.|.+.+.|+|.+. . +        ...|....    ....+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~-~-~--------~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   66 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGG-E-L--------PADRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTI   66 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCe-E-C--------CCCceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEE
Confidence            4799999999999999998542 1 1        12233322    13458999999999999999999 5667888888


Q ss_pred             Eecee
Q psy14080        103 NAPGL  107 (113)
Q Consensus       103 ~L~V~  107 (113)
                      .|.|+
T Consensus        67 ~l~V~   71 (71)
T cd05731          67 SVTVE   71 (71)
T ss_pred             EEEEC
Confidence            88874

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=5.9e-13  Score=80.74  Aligned_cols=80  Identities=19%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-CCC
Q psy14080         21 AVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-YTT   97 (113)
Q Consensus        21 G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~   97 (113)
                      |++++|.|.+.+.  +.+.+.|++......  ...   ....|.... +......+|.|.+++.+|+|.|+|.+.. .+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~--~~~---~~~~~~~~~-~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~   74 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRG--RGK---SMVTRQSLS-EATELSSTLTIPNATLKDSGTYTCAASSGTMD   74 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccC--Cce---Eeecccccc-cceEEEEEEEECCCChhhCEEEEEEEccCCCc
Confidence            7899999999988  678999976442110  000   001122111 1112356999999999999999999954 456


Q ss_pred             eeEEEEece
Q psy14080         98 TSHSQNAPG  106 (113)
Q Consensus        98 ~s~~~~L~V  106 (113)
                      .+..+.|.|
T Consensus        75 ~~~s~~v~v   83 (84)
T cd05742          75 QKESTKVNI   83 (84)
T ss_pred             eEEEEEEEE
Confidence            666666654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.47  E-value=6.2e-13  Score=81.94  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=51.9

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      +++.++.+|+++.|.|.+.+ +.+.|.|+|.  +..+..      .+.|+.+.      +..|.|.|++.+|+|.|.|.+
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n--g~~i~~------~~~r~~~~------~~~L~I~nv~~~DsG~Y~C~a   67 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFD--GKVLTP------ESAKYLLY------RDGLLIFNASEADAGRYQCLS   67 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEEC--CEECCC------CCceEEEE------CCcEEEeCCCHHHCEEEEEEE
Confidence            45678999999999999864 5678999884  333321      23577654      336999999999999999999


Q ss_pred             cCC
Q psy14080         93 QPY   95 (113)
Q Consensus        93 ~~~   95 (113)
                      ...
T Consensus        68 ~e~   70 (87)
T cd05873          68 VEK   70 (87)
T ss_pred             Eec
Confidence            654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=6.6e-13  Score=82.52  Aligned_cols=83  Identities=14%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             eEeecceEEEecC---CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCC
Q psy14080          9 LTAFGQISTGFLA---VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRD   84 (113)
Q Consensus         9 ~~~~~~~~tv~~G---~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D   84 (113)
                      +...+.++.+.+|   .++.|.|.+.+.+.+.+.|+|..  ..+.      ..+.|+.+.      +..|.|.++. .+|
T Consensus         4 f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~--~~i~------~~~~~~~~~------~g~L~I~~~~~~~D   69 (93)
T cd05849           4 FEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNN--LDID------LTNDRYSMV------GGNLVINNPDKYKD   69 (93)
T ss_pred             EEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECC--EEcc------CCCCeEEEE------CCEEEECcCCcCCC
Confidence            3344555555544   48999999999999999999843  2221      124577553      3489999985 799


Q ss_pred             CEEEEEeec-CCCCe-eEEEEec
Q psy14080         85 NGTYECQAQ-PYTTT-SHSQNAP  105 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~-s~~~~L~  105 (113)
                      +|.|.|.+. ..+.. ++.++|.
T Consensus        70 ~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          70 AGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CEEEEEEEEeCcceEEEccEEEe
Confidence            999999995 44543 5666653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.46  E-value=2.3e-12  Score=82.14  Aligned_cols=81  Identities=12%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCC--CCcEEEEEccCC-CCCCEEEEEee-cCC
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG--SDDWNLQIKFLQ-KRDNGTYECQA-QPY   95 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~v~-~~D~G~Y~C~~-~~~   95 (113)
                      .|.++.|.|.+.+.+.+.+.|+|.  +..+.      ..++||.......  ....+|+|.++. .+|.|.|.|.+ +..
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~--g~~l~------~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~   93 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKN--GVPLD------LGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSL   93 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEEC--CEECC------CCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCC
Confidence            578999999999999999999983  33332      1245776442111  124689999997 69999999999 566


Q ss_pred             CCeeEEEEeceec
Q psy14080         96 TTTSHSQNAPGLG  108 (113)
Q Consensus        96 ~~~s~~~~L~V~g  108 (113)
                      +..+..+.|.|.+
T Consensus        94 G~~~~~i~L~~~~  106 (109)
T cd05773          94 GEDSLDIQLVSTS  106 (109)
T ss_pred             ccCcEEEEEEecC
Confidence            8888889998865

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.46  E-value=7.5e-13  Score=78.72  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQ  102 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~  102 (113)
                      |.|.|.+.+.|.+.|.|+|..  ..+..+     ...|+....    +...|.|.+++.+|+|.|.|.+ +..+..+..+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~--~~l~~~-----~~~~~~~~~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   69 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNG--MDITPK-----LSKQLTLIA----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDIS   69 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECC--EECCCC-----CCccEEEeC----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEE
Confidence            579999999999999999843  222211     134665542    3448999999999999999999 4567888889


Q ss_pred             Eeceec
Q psy14080        103 NAPGLG  108 (113)
Q Consensus       103 ~L~V~g  108 (113)
                      .|.|+.
T Consensus        70 ~l~V~~   75 (76)
T cd05736          70 SLFVED   75 (76)
T ss_pred             EEEEEc
Confidence            998864

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=99.46  E-value=2.8e-12  Score=82.99  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             cCCcEEEEEEEccCC-----------CCEEEEEecC---------CCeEEEe-cceEE-cC--CCCEEEEEe-CCCCcEE
Q psy14080         20 LAVFSYSDKTVRDIV-----------KVRVSWVRRR---------DWHILTS-GVLTY-TN--DARFQVIHT-DGSDDWN   74 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~-----------~~~V~W~k~~---------~~~~l~~-~~~~~-~~--~~R~~~~~~-~~~~~~~   74 (113)
                      .|++|+|+|.+.-.+           ...|.|+|..         ...++.+ +.... ..  .+|..+..+ ...++.+
T Consensus         1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as   80 (117)
T cd05901           1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS   80 (117)
T ss_pred             CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence            478999999998332           3589999962         1233333 32222 11  357776532 2457889


Q ss_pred             EEEccCCCCCCEEEEEeecC-CCCeeEEEEeceecc
Q psy14080         75 LQIKFLQKRDNGTYECQAQP-YTTTSHSQNAPGLGD  109 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g~  109 (113)
                      |+|.+++.+|+|.|.|.+.. ....+..+.|.|.|.
T Consensus        81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~Gv  116 (117)
T cd05901          81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSGV  116 (117)
T ss_pred             EEEcccccccCEEEEEEEEECCcccEEEEEEEEEEE
Confidence            99999999999999999964 356688899999985

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=99.45  E-value=1.7e-12  Score=89.43  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             ceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEec--ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         14 QISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSG--VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~--~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ..++|.+|++|.|.|... ....+.|.|+|+.. .+..++  ...+..  .+|++.. ..+..+.+|+|++|+.+|+|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~m-S~s~~~StItIknVt~sDeGcY  100 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYL-SKSFNESTILIKNVSLKDNGCY  100 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEe-ccCCCcceEEEEeCChhhCeEE
Confidence            357899999999999985 44567899999754 222221  122222  2488742 2445678999999999999999


Q ss_pred             EEeecCCC---CeeEEEEeceeccc
Q psy14080         89 ECQAQPYT---TTSHSQNAPGLGDL  110 (113)
Q Consensus        89 ~C~~~~~~---~~s~~~~L~V~g~~  110 (113)
                      +|.+++.|   ..+..+-|.|.+++
T Consensus       101 ~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        101 TCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEecCCCCCceeEEEEEEEchh
Confidence            99998764   55788899998875

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.45  E-value=3.4e-12  Score=79.27  Aligned_cols=84  Identities=19%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             eEeecceEEEecC---CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCC
Q psy14080          9 LTAFGQISTGFLA---VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRD   84 (113)
Q Consensus         9 ~~~~~~~~tv~~G---~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D   84 (113)
                      +...++++.+.+|   ++|+|.|.+.+.+.+.+.|+|.  +..+..     ..+.|+.+.      +.+|.|.++. .+|
T Consensus         4 f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~--g~~l~~-----~~~~~~~~~------~g~L~I~~~~~~~D   70 (94)
T cd05850           4 FEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN--GTEIKF-----APESRYTLV------AGNLVINNPQKARD   70 (94)
T ss_pred             eEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC--CEECcc-----CCCceEEEE------CCeEEEccCCccCc
Confidence            3445666666555   5899999999999999999984  333321     124566654      3479998866 699


Q ss_pred             CEEEEEeec-CCCCe-eEEEEec
Q psy14080         85 NGTYECQAQ-PYTTT-SHSQNAP  105 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~-s~~~~L~  105 (113)
                      +|.|.|.+. ..+.. +..+.|.
T Consensus        71 ~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          71 AGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CEEEEEEEEcCcCcEEEEEEEEe
Confidence            999999994 44543 5666663

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.44  E-value=9.1e-13  Score=79.50  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      +.+..++...+.+|++++|.|.+.+.+. ..+.|||.  +..+.               .    ...+|.|.++ .+|+|
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn--g~~l~---------------~----~~~~l~i~~~-~~dsG   59 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN--GKLLE---------------T----TTNSYRIRAA-NNDSG   59 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC--CEEee---------------c----cCCeEEEeec-ccCCE
Confidence            4455667788999999999999998764 46999983  22221               0    1347899999 99999


Q ss_pred             EEEEeecCCCCeeEEEEece
Q psy14080         87 TYECQAQPYTTTSHSQNAPG  106 (113)
Q Consensus        87 ~Y~C~~~~~~~~s~~~~L~V  106 (113)
                      .|+|.+.. ...|..+.|.|
T Consensus        60 ~Y~C~a~~-~~~S~~v~l~V   78 (78)
T cd05752          60 EYRCQTQG-SSLSDPVHLEV   78 (78)
T ss_pred             EeEEECCC-CcCCCCEEEeC
Confidence            99999965 47777788775

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.44  E-value=7.2e-13  Score=78.42  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCe--eE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT--SH  100 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~--s~  100 (113)
                      +.|+|.+.+.|.+.|.|||.  +..+.       .+.++  .     ...+|.|.+++++|+|.|+|.+ +..+..  +.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~--g~~l~-------~~~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~   64 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKN--GQLIV-------LNHTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH   64 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEEC--CEECC-------CCCEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence            46999999999999999994  33331       12222  1     2458999999999999999999 555544  45


Q ss_pred             EEEece
Q psy14080        101 SQNAPG  106 (113)
Q Consensus       101 ~~~L~V  106 (113)
                      ++.|.|
T Consensus        65 t~~l~v   70 (70)
T cd05864          65 TFQLVV   70 (70)
T ss_pred             EEEEEC
Confidence            555543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.43  E-value=2.1e-12  Score=76.06  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCee
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTS   99 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s   99 (113)
                      |++++|.|.+.+.|.|.|.|+|..  ..+.       ...|+..      +...|+|.+++  |+|.|.|.+ +..+..+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g--~~l~-------~~~~~~~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~   63 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGG--EELT-------KEDEMPV------GRNVLELTNIY--ESANYTCVAISSLGMIE   63 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECC--EECC-------Cccceec------CccEEEEeccc--cCeeEEEEEEeCCCEEE
Confidence            789999999999999999999843  2221       2334432      23489999974  899999999 5667777


Q ss_pred             EEEEec
Q psy14080        100 HSQNAP  105 (113)
Q Consensus       100 ~~~~L~  105 (113)
                      ..++|+
T Consensus        64 ~~a~l~   69 (69)
T cd05739          64 ATAQVT   69 (69)
T ss_pred             EEEEEC
Confidence            777763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.41  E-value=8.3e-13  Score=78.66  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC-C--CeeE
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY-T--TTSH  100 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~--~~s~  100 (113)
                      +.|.|.+.+.|.+.+.|+|.+  ..+..      ...|+..      +..+|.|.+++.+|+|.|+|.+... .  ....
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg--~~l~~------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~   66 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDG--LPAAE------KCSRYHV------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL   66 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECC--EECCC------CCcEEEe------CCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence            369999999999999999853  33211      1235543      2348999999999999999999542 2  2344


Q ss_pred             EEEece
Q psy14080        101 SQNAPG  106 (113)
Q Consensus       101 ~~~L~V  106 (113)
                      .+.|.|
T Consensus        67 ~i~~~~   72 (72)
T cd07702          67 TITLIV   72 (72)
T ss_pred             EEEEEC
Confidence            445543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.40  E-value=3.9e-12  Score=77.07  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             EEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEE--E-eCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080         26 SDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVI--H-TDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS  101 (113)
Q Consensus        26 L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~--~-~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~  101 (113)
                      |+|++.+.|.|.|.|||.  +..|.       .++|+...  . .......+|+|.+++.+|+|.|+|.+ +..+..+.+
T Consensus         3 i~~~v~G~P~Pti~W~kn--g~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~   73 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHE--GAILN-------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN   73 (79)
T ss_pred             EEEEEeEeCCCceEEEEC--CEECC-------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence            789999999999999983  44442       23333221  1 11123568999999999999999999 566777776


Q ss_pred             EEec
Q psy14080        102 QNAP  105 (113)
Q Consensus       102 ~~L~  105 (113)
                      +.+.
T Consensus        74 ~~~~   77 (79)
T cd05855          74 VSAH   77 (79)
T ss_pred             EEee
Confidence            6654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.38  E-value=8.4e-12  Score=75.73  Aligned_cols=72  Identities=22%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             EEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCCCEEEEEee-cCCCCe
Q psy14080         25 YSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRDNGTYECQA-QPYTTT   98 (113)
Q Consensus        25 ~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~   98 (113)
                      .|+|.+.+.|.|.|.|||.  +..+.       .+++......     ......+|.|.+++.+|+|.|.|.+ +..+..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~--g~~i~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHN--GAVLN-------ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             eEEEEeEeeCCCcEEEEEC--CEECc-------CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence            3799999999999999993  33332       1222222110     1234568999999999999999999 566777


Q ss_pred             eEEEEec
Q psy14080         99 SHSQNAP  105 (113)
Q Consensus        99 s~~~~L~  105 (113)
                      +..++|.
T Consensus        73 ~~~~~~~   79 (81)
T cd04971          73 SKSISAH   79 (81)
T ss_pred             eeEEEee
Confidence            7766654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=99.37  E-value=6.8e-12  Score=80.70  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=59.7

Q ss_pred             EEEecCCcEEEEEEEccCC--C-CEEEEEecCCCeEEEe------cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         16 STGFLAVFSYSDKTVRDIV--K-VRVSWVRRRDWHILTS------GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~-~~V~W~k~~~~~~l~~------~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      ..+..|++++|.|++++..  . ..++|+||.++.+-..      ++.......||....+.+++..+|+|.+++.+|+|
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            4567788999999997643  3 6899999986532111      22111246899988888889999999999999999


Q ss_pred             EEEEeec
Q psy14080         87 TYECQAQ   93 (113)
Q Consensus        87 ~Y~C~~~   93 (113)
                      +|+|...
T Consensus        88 ~Y~Ca~e   94 (115)
T cd05721          88 IYFCKIE   94 (115)
T ss_pred             EEEEEee
Confidence            9999884

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG3513|consensus

Probab=99.37  E-value=2.4e-12  Score=106.30  Aligned_cols=91  Identities=19%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |........+.+.+..|.++.|.|...+.+.+.+.|.|... .+        ..++||.+.     .+.+|.|.|++.+|
T Consensus       425 P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~-~~--------~~~~r~~i~-----edGtL~I~n~t~~D  490 (1051)
T KOG3513|consen  425 PVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE-KL--------LQSGRIRIL-----EDGTLEISNVTRSD  490 (1051)
T ss_pred             CCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc-cc--------ccCceEEEC-----CCCcEEecccCccc
Confidence            77777788888899999999999999999999999987443 22        257899987     47899999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..++.+..++|.|+..
T Consensus       491 aG~YtC~A~N~~G~a~~~~~L~Vkd~  516 (1051)
T KOG3513|consen  491 AGKYTCVAENKLGKAESTGNLIVKDA  516 (1051)
T ss_pred             CcEEEEEEEcccCccceEEEEEEecC
Confidence            99999999 56688999999999864

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.36  E-value=6.9e-12  Score=71.90  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             CCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         21 AVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        21 G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      |++++|.|.+ .+.+...+.|+|.+.......         ......+.......|.|.+++.+|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS---------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE---------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcc---------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 666778999999764221110         00111100001115999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=99.36  E-value=1.4e-11  Score=77.14  Aligned_cols=85  Identities=15%  Similarity=0.138  Sum_probs=58.1

Q ss_pred             CcEEEEEEEccC-CCCEEEEEecCCC--eEEEecc----eEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         22 VFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGV----LTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        22 ~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~----~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ++|+|+|.+... ....|.|.|..+.  ..+..-.    ..+..  .+|..+. +.+.++.+|.|+|++.+|+|.|.|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence            468999999743 3458999887532  2222111    11111  2577765 35667889999999999999999999


Q ss_pred             cCCC--CeeEEEEecee
Q psy14080         93 QPYT--TTSHSQNAPGL  107 (113)
Q Consensus        93 ~~~~--~~s~~~~L~V~  107 (113)
                      .+.|  +.+...+|.|+
T Consensus        80 ~tfP~G~~~~~~~l~~~   96 (96)
T cd05887          80 VTFPLGNTQSSTTVTVL   96 (96)
T ss_pred             EeCCCCCeeEEEEEEEC
Confidence            7665  56677777764

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.36  E-value=8e-12  Score=79.47  Aligned_cols=85  Identities=11%  Similarity=0.012  Sum_probs=57.7

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCC---C-eEEEe--cceEE----cCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRD---W-HILTS--GVLTY----TNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~-~~l~~--~~~~~----~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+.+|++|.|+|.........+.|||...   . .++.+  +....    .-.+|..+.     .+.+|.|++++.+|+|
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-----~ngSL~I~~v~~~D~G   83 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-----PNGSLLIQNVTQKDTG   83 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-----CCCcEEEecCCcccCE
Confidence            57889999999986544455899999642   1 23222  11111    124677776     3669999999999999


Q ss_pred             EEEEeecCC--CCeeEEEEece
Q psy14080         87 TYECQAQPY--TTTSHSQNAPG  106 (113)
Q Consensus        87 ~Y~C~~~~~--~~~s~~~~L~V  106 (113)
                      .|.|.+...  ......+.|.|
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEEEC
Confidence            999999543  34455666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.35  E-value=1.1e-11  Score=73.72  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             EEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-CCCCeeEE
Q psy14080         24 SYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-PYTTTSHS  101 (113)
Q Consensus        24 a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~~~~~s~~  101 (113)
                      +.|.|.+.+ .+.+.+.|||..  ..+....   ....|+.+.  ......+|.|.+++.+|+|.|+|.+. ..+..+..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g--~~i~~~~---~~~~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNG--KEIGAKN---KPDNKIKIR--KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             CEEEEecccCCCCCceEEEECC--cccccCC---CCCceEEEE--eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            479999864 577899999953  2222111   113455543  23456799999999999999999995 45666655


Q ss_pred             EE
Q psy14080        102 QN  103 (113)
Q Consensus       102 ~~  103 (113)
                      ++
T Consensus        74 ~~   75 (76)
T cd05895          74 AN   75 (76)
T ss_pred             Ee
Confidence            54

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>PHA03376 BARF1; Provisional

Probab=99.35  E-value=1.1e-11  Score=85.75  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             eecceEEEecCCcEEEEEEEcc---CCCCEEEEEecC---CCeEEEec-ceE----EcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRD---IVKVRVSWVRRR---DWHILTSG-VLT----YTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~---~~~~~V~W~k~~---~~~~l~~~-~~~----~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ..++.+++..|+.|.|+|.+..   .....|.|||-.   +..++..+ ...    +....|+.+..  +.++++|.|.+
T Consensus        16 ~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~   93 (221)
T PHA03376         16 AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTA   93 (221)
T ss_pred             ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEe
Confidence            5566899999999999999872   245689999943   22334332 211    22245777653  45899999999


Q ss_pred             CCCCCCEEEEEeecCC
Q psy14080         80 LQKRDNGTYECQAQPY   95 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~   95 (113)
                      ++++|.|+|.|.+...
T Consensus        94 l~lSDdGtY~C~fQkg  109 (221)
T PHA03376         94 ANISHDGNYLCRMKLG  109 (221)
T ss_pred             eeecCCceEEEEEEcC
Confidence            9999999999999754

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.35  E-value=5.1e-11  Score=74.93  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEe--CCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHT--DGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~~v~   81 (113)
                      ||.|  ...+...+.+|++|.|.|.+...|. ..|.|.+.+.  .+..     ..+.||.+...  ......+|+|.++.
T Consensus         2 pP~i--~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~--~i~~-----~~~~r~~I~~~~~~~g~~S~L~I~~~~   72 (98)
T cd05898           2 PPII--SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKEN--VLES-----GTSERYTVERTSTGSGVLSTLTINNIM   72 (98)
T ss_pred             CCEE--ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccc--cccC-----CCCCCEEEEEEccCCCcEEEEEECCCc
Confidence            4555  3334467889999999999965555 4677766432  2221     13579988642  23566799999999


Q ss_pred             CCC-CEEEEEee-cCCCCeeEEEEec
Q psy14080         82 KRD-NGTYECQA-QPYTTTSHSQNAP  105 (113)
Q Consensus        82 ~~D-~G~Y~C~~-~~~~~~s~~~~L~  105 (113)
                      .+| .|.|.|.+ +..+..+..+.|+
T Consensus        73 ~~d~~g~Y~C~a~N~~G~d~~~i~L~   98 (98)
T cd05898          73 EADFQTHYNCTAWNSFGSGTAIIQLE   98 (98)
T ss_pred             cccCCcEEEEEEEeCCccceEEEEeC
Confidence            877 89999999 5667877777763

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.35  E-value=3.1e-12  Score=80.02  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=58.3

Q ss_pred             eeEeecceEEEecCCcEEEEEE-EccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKT-VRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~-v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      +.....+.+.|.+|+++.|.|. -.+.+.+.|.|++.. ...+       ..+.|+.+.     .+++|.|++|+.+|+|
T Consensus         5 ~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~-~~~i-------~~~~Ri~~~-----~~GnL~fs~v~~~D~g   71 (95)
T cd05845           5 WPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD-LLHI-------TQDERVSMG-----QNGNLYFANVEEQDSH   71 (95)
T ss_pred             CCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCC-Cccc-------cccccEEEC-----CCceEEEEEEehhhCC
Confidence            3345557789999999999998 578899999999643 2222       246788765     3589999999999999


Q ss_pred             -EEEEeecC
Q psy14080         87 -TYECQAQP   94 (113)
Q Consensus        87 -~Y~C~~~~   94 (113)
                       .|.|.+..
T Consensus        72 ~~Y~C~a~~   80 (95)
T cd05845          72 PDYICHAHF   80 (95)
T ss_pred             CCeEEEEEc
Confidence             89999964

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.35  E-value=9.6e-12  Score=75.56  Aligned_cols=76  Identities=12%  Similarity=0.003  Sum_probs=54.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +..++++.+.+|+++.|+|.+.+.|.+ .|.|+|.  +..+.         .++..      ....|.|.++  .|+|.|
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~--g~~l~---------~~~~~------~~s~L~i~~~--~d~g~Y   62 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG--GSPLG---------DPPAP------SPSVLNVPGL--NETSKF   62 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC--CEECC---------CCCCC------CCCEEEEccc--cCCeEE
Confidence            345677889999999999999999999 7999984  33321         12221      2348999887  589999


Q ss_pred             EEeec-CCCC-eeEEEEe
Q psy14080         89 ECQAQ-PYTT-TSHSQNA  104 (113)
Q Consensus        89 ~C~~~-~~~~-~s~~~~L  104 (113)
                      .|.+. ..+. .++.+.|
T Consensus        63 ~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          63 SCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEEEEeccCcEEeeeEEe
Confidence            99994 4453 3455554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.33  E-value=1.1e-11  Score=76.96  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             EEEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         16 STGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ..+.+|+++.|.|...+.     +.+.|.|||..  ..+.        +.+....     ....|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~--~~i~--------~~~~~~~-----~~~~L~I~~v~~~DsG~YtC   69 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC--KLLE--------GDRKRFV-----KGSKLLIQNVTEEDAGNYTC   69 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECC--EECC--------CCccEEe-----cCCEEEEeeCChhhCEEEEE
Confidence            467889999999987532     46799999843  3321        2222222     24599999999999999999


Q ss_pred             eec-CCCCe----eEEEEecee
Q psy14080         91 QAQ-PYTTT----SHSQNAPGL  107 (113)
Q Consensus        91 ~~~-~~~~~----s~~~~L~V~  107 (113)
                      .+. .....    +..++|.|+
T Consensus        70 ~~~n~~~~~~~~~t~t~~l~v~   91 (92)
T cd05757          70 KLTFTHNGKQYNVTRTISLTVT   91 (92)
T ss_pred             EEEecCCCEEEEEEEEEEEEEe
Confidence            994 44433    444555443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=99.33  E-value=4.5e-11  Score=75.24  Aligned_cols=83  Identities=12%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             cEEEEEEEccC-CC---CEEEEEecCC---CeEEEecce---EEc--CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         23 FSYSDKTVRDI-VK---VRVSWVRRRD---WHILTSGVL---TYT--NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        23 ~a~L~C~v~~~-~~---~~V~W~k~~~---~~~l~~~~~---~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      +|+|+|.+... +.   ..|.|.|..+   ..+..+...   .+.  -.+|.... +...++.+|.|+|++.+|+|.|.|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence            68999999743 21   2699988642   233332211   111  13677765 345678899999999999999999


Q ss_pred             eecCCC--CeeEEEEece
Q psy14080         91 QAQPYT--TTSHSQNAPG  106 (113)
Q Consensus        91 ~~~~~~--~~s~~~~L~V  106 (113)
                      .+.+.|  ..+..+.|.|
T Consensus        81 ~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCeEEEEEEEE
Confidence            998754  5677788877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=99.32  E-value=4.4e-11  Score=74.92  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CcEEEEEEEccC-CCCEEEEEecCCC---eEEEe---cceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         22 VFSYSDKTVRDI-VKVRVSWVRRRDW---HILTS---GVLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        22 ~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l~~---~~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      +.++|+|.+... ....|.|.|..++   .+...   ....+..  .+|+.... ....+.+|.|+||+.+|+|.|.|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~   79 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL   79 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence            468999999743 3457899997532   33222   1112222  25777653 2346789999999999999999999


Q ss_pred             cCCCCeeEEEEecee
Q psy14080         93 QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~  107 (113)
                      .+.|..+......|.
T Consensus        80 ~t~P~g~~~~~i~~~   94 (96)
T cd05889          80 VTYPQGSWEKVIEVV   94 (96)
T ss_pred             EeCCCCCeEEEEEEE
Confidence            998887777776664

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.31  E-value=1.2e-11  Score=88.36  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             ceEEEecCCcEEEEEEEcc-----------CCCCEEEEEecCCCeEEEecceEEcCCCCE---EEEEeC-CCCcEEEEEc
Q psy14080         14 QISTGFLAVFSYSDKTVRD-----------IVKVRVSWVRRRDWHILTSGVLTYTNDARF---QVIHTD-GSDDWNLQIK   78 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-----------~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~---~~~~~~-~~~~~~L~I~   78 (113)
                      ..+.+.+|++|.|+|.+.+           ..++.|.|+|.+ ...+..+     .+.|-   .+..+. .....+|.|.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~-s~~~v~~-----~~~~~~~~~i~~~~~~~r~~~L~I~  103 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTD-SLAFVRD-----SGARTKIKKITHNEIGDRSENLWIG  103 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCC-eEEEEEc-----CCCccccccccccceecCCCeEEEC
Confidence            4578899999999999865           346799999953 2222111     12221   011100 1235699999


Q ss_pred             cCCCCCCEEEEEeecC-CCCeeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQP-YTTTSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g  108 (113)
                      +++.+|+|.|.|++.. ....+..+.|.|..
T Consensus       104 ~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~  134 (227)
T PHA02826        104 NVINIDEGIYICTISSGNICEESTIRLTFDS  134 (227)
T ss_pred             CCChHHCEEEEEEEEECCcceEEEEEEEEec
Confidence            9999999999999954 44556777787753

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.31  E-value=5.3e-12  Score=76.82  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             EEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-C
Q psy14080         17 TGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P   94 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~   94 (113)
                      .+.+|++++|.|.... .+...+.|||.+  ..+.           +      .....+|.|.+++.+|+|.|+|.+. .
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g--~~~~-----------~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDG--KAKK-----------Y------SHSNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECC--eEcc-----------c------cCCCceEEECccCHHHCEEEEEEEEeC
Confidence            6889999999999853 455689999843  1110           0      1134689999999999999999994 3


Q ss_pred             C-CCeeEEEEece
Q psy14080         95 Y-TTTSHSQNAPG  106 (113)
Q Consensus        95 ~-~~~s~~~~L~V  106 (113)
                      . +..|..+.|.|
T Consensus        71 ~~~~~s~~~~i~~   83 (83)
T cd05753          71 SYDYSSEPVSITV   83 (83)
T ss_pred             CceecCCCEEEEC
Confidence            3 45677777765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.30  E-value=3.9e-11  Score=70.68  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=48.1

Q ss_pred             EEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCC-EEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEE
Q psy14080         25 YSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDAR-FQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHS  101 (113)
Q Consensus        25 ~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~  101 (113)
                      +|.|.+.+ .|.+.+.|+|..  ..+...     .+.+ +.+.  ......+|.|.+++.+|+|.|.|.+ +..+..+..
T Consensus         2 ~l~C~~~g~~P~p~~~W~k~g--~~l~~~-----~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750           2 VLKCEATSEYPSLRFKWFKDG--KELNRK-----NKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVT   72 (75)
T ss_pred             EEEEEccCCCCCceEEEEcCC--eecccc-----CCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence            69999999 888999999843  222211     1111 2222  2234679999999999999999999 455666655


Q ss_pred             EE
Q psy14080        102 QN  103 (113)
Q Consensus       102 ~~  103 (113)
                      ++
T Consensus        73 ~~   74 (75)
T cd05750          73 AN   74 (75)
T ss_pred             Ee
Confidence            44

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.28  E-value=3.6e-11  Score=67.14  Aligned_cols=60  Identities=17%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +|++++|.|.+.+.+.+.+.|+|..  ..+.         .+....    .....|.|.+++.+|+|.|+|.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~---------~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n   60 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDG--KPLP---------ESNRLS----ASGSTLTIKSVSLEDSGEYTCVAEN   60 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECC--EECC---------CCCEEe----cCCcEEEEeeCCcccCEEEEEEEec
Confidence            5899999999887788899999842  1111         122222    2456999999999999999999854

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.28  E-value=1.3e-11  Score=77.30  Aligned_cols=70  Identities=16%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             ceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.+.+|+.+.|.|.-. +.+.+.+.|+|......+.       .++|..+..    .+++|.|.+|+.+|+|.|+|.+
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~~----~~G~L~fs~v~~~D~g~Y~C~A   79 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP-------EDGRRFVSQ----TNGNLYIAKVEASDRGNYSCFV   79 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc-------cCCCeEEeC----CCCcEEEeecCHhhCceeEEEE
Confidence            446789999999999875 5578899999965332221       244444431    4679999999999999999999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        80 ~n   81 (96)
T cd05727          80 SS   81 (96)
T ss_pred             Ee
Confidence            54

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.27  E-value=3e-11  Score=86.26  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             eEEEecCCcEEEEEEEcc-----CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRD-----IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~-----~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      +..+.+|+++.|.|...+     .+.+.|.|||.  +..+.       .++|+.+..    +..+|.|.+++.+|+|.|+
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn--g~~l~-------~~~r~~~~~----~~~~L~I~~V~~~DsG~Yt  204 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN--GNIVL-------YTDRIQLRN----NNSTLVIKSATHDDSGIYT  204 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEEC--CEECC-------CCCCEEEeC----CCCEEEECcCCHHhCEEEE
Confidence            346678999999999863     34689999994  33332       356777652    3458999999999999999


Q ss_pred             EeecCC--C---CeeEEEEece
Q psy14080         90 CQAQPY--T---TTSHSQNAPG  106 (113)
Q Consensus        90 C~~~~~--~---~~s~~~~L~V  106 (113)
                      |.+...  +   ..++.++|.|
T Consensus       205 C~a~~~~~g~~y~~t~~~~~~~  226 (227)
T PHA02826        205 CNLRFNKNSNNYNITKEYKVTI  226 (227)
T ss_pred             EEEEEeECCEEEEEEEEEEEEE
Confidence            999642  2   3455555554

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.24  E-value=6.5e-11  Score=70.79  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=47.9

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC----CCCEEEEEeec-CCCCe
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK----RDNGTYECQAQ-PYTTT   98 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~-~~~~~   98 (113)
                      ++|.|.+.+.|.+.|.|+|.  +..+..     ..+.|+....    .+.+|.|.++..    +|+|.|.|.+. ..+..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~--g~~l~~-----~~~~~~~~~~----~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRN--GTHFDP-----EKDPRVTMKP----DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEEC--CeECCC-----CCCCCEEEeC----CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            47999999999999999983  333211     1245665432    356899998864    79999999994 44543


Q ss_pred             -eEEEEe
Q psy14080         99 -SHSQNA  104 (113)
Q Consensus        99 -s~~~~L  104 (113)
                       +..++|
T Consensus        70 ~s~~~~l   76 (77)
T cd05733          70 ISNEIHL   76 (77)
T ss_pred             EccccEE
Confidence             445544

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>KOG3513|consensus

Probab=99.24  E-value=5.2e-11  Score=98.60  Aligned_cols=93  Identities=23%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +|+..+. ..++..+..|++++|.|.+.+.+.+.|.|+|.  +..+...    ..++|+++.      ...|+|++|+++
T Consensus       330 a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN--g~pl~~~----~r~~~~~i~------~g~L~is~v~~~  396 (1051)
T KOG3513|consen  330 APPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKN--GEPLEPA----ERDPRYKID------DGTLIISNVQES  396 (1051)
T ss_pred             cCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeC--CeecCcc----CCCcceEEe------CCEEEEEecccc
Confidence            3343333 55678889999999999999999999999984  3332211    246778886      559999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |+|+|.|.+ +.++..-..++|.|+..
T Consensus       397 dsg~YQC~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  397 DSGVYQCIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             cCeEEEeeeecccceEeeeeEEEEEcc
Confidence            999999999 67788888899999864

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.24  E-value=7.1e-11  Score=72.46  Aligned_cols=79  Identities=15%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      +++++.+|.++.|+|...+. ...+.|++++..  +       ..+.|+...      ..-|.|.+++++|+|.|.|...
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~--l-------~~~~r~~~~------~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTP--L-------NAQFSYRVG------TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcc--c-------CCCcceEEe------CCCCEEEECCHhhCEEEEEEEe
Confidence            57899999999999999864 569999986532  2       235777765      2247899999999999999996


Q ss_pred             CCCCe--eEEEEeceec
Q psy14080         94 PYTTT--SHSQNAPGLG  108 (113)
Q Consensus        94 ~~~~~--s~~~~L~V~g  108 (113)
                      ..+..  -..+.|.|..
T Consensus        68 E~gf~~~~~~y~l~v~~   84 (85)
T cd05872          68 EEGFQQLVASYSLNVVE   84 (85)
T ss_pred             cCCCeEEEEEEEEEEeC
Confidence            55433  3555666543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.24  E-value=8.6e-11  Score=70.45  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC---C-CCCEEEEEeec-CCC-C
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ---K-RDNGTYECQAQ-PYT-T   97 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~---~-~D~G~Y~C~~~-~~~-~   97 (113)
                      +.|.|.+.+.|.+.|.|+|..  ..+..     ..++|+.+..    .+.+|.|.+++   + +|+|.|.|.+. ..+ .
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g--~~~~~-----~~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNG--KFFNV-----AKDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             CEEEEeccccCCCEEEEEECC--EEccC-----cCCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            469999999999999999843  22211     2466776542    35689999874   2 46999999995 444 3


Q ss_pred             eeEEEEe
Q psy14080         98 TSHSQNA  104 (113)
Q Consensus        98 ~s~~~~L  104 (113)
                      .+..+.|
T Consensus        70 ~s~~~~~   76 (77)
T cd05875          70 LSNKILL   76 (77)
T ss_pred             EEEEEEE
Confidence            4566655

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.22  E-value=1.1e-10  Score=74.02  Aligned_cols=85  Identities=8%  Similarity=-0.004  Sum_probs=53.5

Q ss_pred             ceEEEecCCcEEEEEEEcc-----------CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRD-----------IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-----------~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+.+.+|+++.|.|....           .....|.|||.......  .........|....      ...|.|.++..
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~--~~~~~~~~~Ri~~~------~~~Lwf~Pa~~   79 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE--PIEIIFDGVRMSKE------EDSIWFRPAEL   79 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC--CCcccccceeEEEe------CCEEEEEeCCh
Confidence            3467899999999999721           12347999995311100  00000011355443      55999999999


Q ss_pred             CCCEEEEEeecC-CCCeeEEEEece
Q psy14080         83 RDNGTYECQAQP-YTTTSHSQNAPG  106 (113)
Q Consensus        83 ~D~G~Y~C~~~~-~~~~s~~~~L~V  106 (113)
                      +|+|.|+|++.. ..-....++|.|
T Consensus        80 eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          80 QDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             hhCeEEEEEECCCCcceEEEEEEEC
Confidence            999999999953 334444556654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.20  E-value=3.5e-10  Score=69.47  Aligned_cols=64  Identities=19%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEEEEEeec-CCC
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQAQ-PYT   96 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~-~~~   96 (113)
                      .|+++.|.|.+.+.+.+.+.|+|.  ...+..     ..+.++...      +..|.|.++. .+|+|.|.|.+. ..+
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~--~~~l~~-----~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~~G   83 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMN--GTEIDD-----EPDSRYSLV------GGNLVISNPSKAKDAGRYQCLASNIVG   83 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEEC--CEECCC-----CCCCCEEEE------CCEEEEecCCccCCCEEEEEEEEcCCC
Confidence            356899999999888899999983  332211     124566554      3489999887 599999999995 444

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.19  E-value=1.7e-10  Score=69.16  Aligned_cols=70  Identities=16%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC----CCCEEEEEeec-CCCCe
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK----RDNGTYECQAQ-PYTTT   98 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~-~~~~~   98 (113)
                      +.|.|.+.+.|.+.|.|+|..  ..+..     ..+.++.+..    .+.+|.|..+..    .|+|.|.|.+. ..+..
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g--~~l~~-----~~~~~~~~~~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNG--THFDI-----DKDPKVTMKP----NTGTLVINIMNGEKAEAYEGVYQCTARNERGAA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECC--eECCC-----cCCCCEEEeC----CCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence            479999999999999999842  22211     1345555432    345788887764    48999999995 44443


Q ss_pred             -eEEEEe
Q psy14080         99 -SHSQNA  104 (113)
Q Consensus        99 -s~~~~L  104 (113)
                       +..+.|
T Consensus        70 ~s~~~~~   76 (77)
T cd05874          70 VSNNIVI   76 (77)
T ss_pred             EeeEEEE
Confidence             455554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.18  E-value=2.5e-10  Score=69.81  Aligned_cols=82  Identities=15%  Similarity=0.094  Sum_probs=51.0

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-CCC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-YTT   97 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~   97 (113)
                      |+++.|.|.+.+.+  ...+.|...+.......    .....|..... ......+|.|.+++.+|+|.|+|.+.. ...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~----~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~   75 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAK----SVSENRRSLQE-HTELSSTLTIENVTLSDLGRYTCTASSGQMI   75 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccce----ecccccccccc-cceeeeEEEEecCCcccCEEEEEEEeecceE
Confidence            78999999998654  45779976542211000    00111111111 122456999999999999999999954 445


Q ss_pred             eeEEEEecee
Q psy14080         98 TSHSQNAPGL  107 (113)
Q Consensus        98 ~s~~~~L~V~  107 (113)
                      .....+|.|-
T Consensus        76 ~~~~t~~~V~   85 (86)
T cd05862          76 AKNSTIVIVH   85 (86)
T ss_pred             ecccEEEEEe
Confidence            5666676663

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.14  E-value=1.9e-10  Score=71.94  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             EEEecCCcEEEEEEE-c----cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         16 STGFLAVFSYSDKTV-R----DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v-~----~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ..+.+|.+..|.|.- .    ....+.|.|||.  ...|.      ..+.||....    +...|.|.+|.++|+|.|+|
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd--~~~l~------~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC   72 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKD--SVLLD------KDNEKFYSLK----GSTYLHIIDVSLNDSGYYTC   72 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccC--CEECc------CCCcceEecC----CCCEEEEEEcChhhCEEEEE
Confidence            356778999999972 2    235578999984  33332      1234555431    23469999999999999999


Q ss_pred             eec-CC-C---CeeEEEEeceec
Q psy14080         91 QAQ-PY-T---TTSHSQNAPGLG  108 (113)
Q Consensus        91 ~~~-~~-~---~~s~~~~L~V~g  108 (113)
                      .+. .. +   ..++...|.|++
T Consensus        73 ~~~~~~~g~~y~vtr~~~l~v~~   95 (95)
T cd05897          73 KLQFTHEGKKYNITRIIKLRIVK   95 (95)
T ss_pred             EEEEeeCCEEEEEEEEEEEEEcC
Confidence            994 32 2   456777777753

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG4194|consensus

Probab=99.09  E-value=2.5e-10  Score=90.47  Aligned_cols=91  Identities=15%  Similarity=0.174  Sum_probs=70.8

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++..+.+.|...|+.|.|.|...|.|.|.|.|.|..+...-.      ....|..+..    ++-.+-|.||+.+|+|+|
T Consensus       615 FtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA------A~eRRl~Vmp----edd~f~Itnvk~eD~GiY  684 (873)
T KOG4194|consen  615 FTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA------ARERRLHVMP----EDDVFFITNVKIEDQGIY  684 (873)
T ss_pred             cccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch------hhhheeeecC----CCCEEEEeccccccccee
Confidence            455667889999999999999999999999996633221111      1245666653    344778999999999999


Q ss_pred             EEee-cCCCCeeEEEEeceecc
Q psy14080         89 ECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        89 ~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.+ +..+..+..++|.|.+.
T Consensus       685 tC~A~n~AG~isanAtL~V~e~  706 (873)
T KOG4194|consen  685 TCTAQNVAGQISANATLTVLET  706 (873)
T ss_pred             EEeeeccccceeeceEEEEecC
Confidence            9999 67789999999999876

>KOG4221|consensus

Probab=99.07  E-value=6.1e-10  Score=93.03  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+.++.+|+++.|.|.+++.+.+.|.|.| + +..+..      .+.||.+.     +..+|.|++++..|+|.|+|.
T Consensus       243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-n-g~~i~~------ds~rivl~-----g~~slliS~a~~~dSg~YtC~  309 (1381)
T KOG4221|consen  243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-N-GEKISV------DSYRIVLV-----GGSSLLISNATDDDSGKYTCR  309 (1381)
T ss_pred             CCCccccccCCcEEEEEEecCCCCCceEEee-C-Ceeeee------cceEEEEe-----cccceEEeccccccCceEEEE
Confidence            3455678999999999999999999999998 3 333322      12466665     466999999999999999999


Q ss_pred             ec-CCCCeeEEEEeceecc
Q psy14080         92 AQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V~g~  109 (113)
                      ++ +.......+.|.|+..
T Consensus       310 Atn~~D~idasaev~V~a~  328 (1381)
T KOG4221|consen  310 ATNTNDSIDASAEVTVLAP  328 (1381)
T ss_pred             ecCCCcccccceEEEEEcC
Confidence            95 4455556677777653

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.06  E-value=3.1e-09  Score=62.51  Aligned_cols=70  Identities=21%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ..+.+|+++.|.|.+.+.+...+.|+|.  ...+..             .  .  +.  |.|.+++.+|+|.|.|.+...
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~~-------------~--~--~~--~~~~~~~~~~~g~y~C~~~~~   67 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKN--GSPINS-------------S--Q--NG--LFIPNVSPEDSGNYTCRASNG   67 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEET--TEEEEE-------------E--S--SE--EEESSEEGGGTEEEEEEEEET
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeee--eeeeee-------------e--e--ee--eeeeeeccccCEEEEEEEEeC
Confidence            4688999999999999877789999983  222210             0  0  11  777999999999999999653


Q ss_pred             --CCeeEEEEece
Q psy14080         96 --TTTSHSQNAPG  106 (113)
Q Consensus        96 --~~~s~~~~L~V  106 (113)
                        ...+..++|.|
T Consensus        68 ~~~~~s~~~~v~V   80 (80)
T PF13895_consen   68 SGSNTSTSVNVTV   80 (80)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCCeEeeeEEeeC
Confidence              35567777765

...

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.05  E-value=2.4e-09  Score=79.91  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             cceEEEecCCcEEEEEEEccCCC---CEEEEEecCCCeEEEecceEEcCCCCEEEEEeC------CCCcEEEEEccCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD------GSDDWNLQIKFLQKR   83 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~------~~~~~~L~I~~v~~~   83 (113)
                      +..+.+.+|++++|.|.+.+.+.   +.|.|+|.  +..+..+..  ..+.|+......      ......|+|.+|+.+
T Consensus       227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn--g~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~  302 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN--GMYYEEDDE--DGDGRISVANKIYTTDKRRVITSRLNINPVKEE  302 (326)
T ss_pred             CCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC--CEECCCcCC--CCceeEEEecCccccccceeeeEEEEECCcchh
Confidence            35667788999999999997664   48999883  333321100  012344432110      012458999999999


Q ss_pred             CCEEEEEeecCCCCeeE
Q psy14080         84 DNGTYECQAQPYTTTSH  100 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~  100 (113)
                      |+|.|+|.+.+......
T Consensus       303 D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        303 DATTFTCMAFTIPSISK  319 (326)
T ss_pred             cCeeeEEEEEeccCceE
Confidence            99999999965444433

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.04  E-value=6.8e-09  Score=65.51  Aligned_cols=92  Identities=14%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCC--CcEEEEEccCCCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGS--DDWNLQIKFLQKRD   84 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~--~~~~L~I~~v~~~D   84 (113)
                      +....+..+.|.+|+++.|.|.+...|.+. +.|.+....  +...     .+.-+... +.++  =...|++..++.+|
T Consensus         5 l~~~~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~--l~~~-----~~~~~~~~-~~~~~rY~S~L~L~Rlk~~E   76 (101)
T cd05860           5 ITPVINTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT--LTNT-----SDHYVKSR-NESNNRYVSELHLTRLKGTE   76 (101)
T ss_pred             EecCCCceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc--cCcc-----ccceeEEe-ccCceEEEEEEEEeecChhh
Confidence            445677889999999999999999999886 999875422  1100     11111110 0011  12489999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEecee
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      +|.|+|.+ +.....+.++.|.|.
T Consensus        77 ~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          77 GGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             CcEEEEEEECCCCeEEEEEEEEEe
Confidence            99999999 456788899998875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=99.02  E-value=2e-09  Score=66.85  Aligned_cols=78  Identities=9%  Similarity=-0.071  Sum_probs=50.5

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEE-EecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHIL-TSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l-~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|++|+|.|.... ....+.|||++..... ..+.   ....|+         ...+.|.+++++|+|+|+|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~---~~~~~~---------~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE---KHHGGF---------QASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc---ccCCeE---------EEEEEecCCCcccCEEEEEEEEC
Confidence            35778999999998875 4457899998743111 1000   011222         34889999999999999999742


Q ss_pred             --CC----CeeEEEEece
Q psy14080         95 --YT----TTSHSQNAPG  106 (113)
Q Consensus        95 --~~----~~s~~~~L~V  106 (113)
                        .+    ..|..+.|.|
T Consensus        77 ~~~~~~wS~~Sdpl~l~V   94 (94)
T cd05711          77 NHSLYEWSAPSDPLKIVV   94 (94)
T ss_pred             CCCCccccCCCCCeEEeC
Confidence              22    3455555543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.98  E-value=4.9e-09  Score=64.56  Aligned_cols=86  Identities=14%  Similarity=0.029  Sum_probs=55.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |..++..... ..|.+|++|+|.|... .+.....|||.+.....          .+   . ........|.|.+|+.+|
T Consensus         1 pkP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~----------~~---~-~~~~~~~~f~i~~v~~~~   64 (91)
T cd05751           1 PKPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAV----------KK---P-PEPQNKAKFFIPSMKREH   64 (91)
T ss_pred             CCCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccc----------cc---c-CCCceeEEEEccCCChhH
Confidence            4455555443 3678999999999876 44567788875321110          00   0 112346689999999999


Q ss_pred             CEEEEEeecCC----CCeeEEEEece
Q psy14080         85 NGTYECQAQPY----TTTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~~~~----~~~s~~~~L~V  106 (113)
                      +|.|+|.....    ...|..+.|.|
T Consensus        65 ~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          65 AGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             CEEEEEEEECCCCccCCCCCcEEEEe
Confidence            99999999543    23455566665

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.93  E-value=4.9e-09  Score=78.30  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=53.7

Q ss_pred             EEecCCcEEEEEEE-----ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         17 TGFLAVFSYSDKTV-----RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        17 tv~~G~~a~L~C~v-----~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      -+.+|+++.|+|.+     .+.+.+.|.|||.+.            ..+|.....    +...|.|.+++.+|+|.|+|.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~------------~~~~~~~~~----~g~~l~i~~~~~~DsG~Y~C~  100 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGA------------DNDRIIPID----NGSNMLILNPTQSDSGIYICI  100 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCC------------ccceEEEcc----CCceEEEcccCcccCeEEEEE
Confidence            46689999999997     566778999999531            111222211    223588999999999999999


Q ss_pred             ec-CCCCeeEEEEeceec
Q psy14080         92 AQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V~g  108 (113)
                      +. ..+..+..++|.|..
T Consensus       101 a~N~~g~~~~s~~L~V~~  118 (326)
T PHA02785        101 TKNETYCDMMSLNLTIVS  118 (326)
T ss_pred             EECCCcceEEEEEEEEEe
Confidence            95 445566677777754

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.80  E-value=1.4e-08  Score=58.84  Aligned_cols=58  Identities=22%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             CcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         22 VFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        22 ~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+.|.|.+.+.+ ...+.|++.. ....        ...+...     ....+|.|+++..+|.|.|.|.+.
T Consensus        16 ~~~~l~C~~~~~~~~~~~~W~~~~-~~~~--------~~~~~~~-----~~~~~L~i~~v~~~~~g~y~C~a~   74 (75)
T PF13927_consen   16 GSVTLTCSAEGGPPPPSISWYDSN-PSFN--------SNSRGSS-----SSNSTLTISNVTRSDNGTYTCIAS   74 (75)
T ss_dssp             EEEEEEEEESSEESSEEEEEETEE-EEEE--------EEEEEEE-----EEEEEEEESSCCGGGTEEEEEEEE
T ss_pred             eeEEEEEEEccccCCeEEEEEecC-Ccee--------eeeeecc-----ceeeEEEEccCCHHhCcEEEEEEE
Confidence            3399999999876 7899998111 1110        0111111     136699999999999999999984

...

>KOG4221|consensus

Probab=98.80  E-value=2.4e-08  Score=83.77  Aligned_cols=84  Identities=23%  Similarity=0.236  Sum_probs=66.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+.++..|++|.|+|.+...+-+.+.|.|.+  +.+       ..++|+.+..     +..|.|.++++.|.|.|.|.+.
T Consensus       148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~--~pl-------~~~~r~i~lp-----sG~L~I~~~qp~d~g~yrc~vt  213 (1381)
T KOG4221|consen  148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKND--QPL-------PLDSRVIVLP-----SGALEISGLQPSDTGEYRCVVT  213 (1381)
T ss_pred             cceeEecCCcEEEEEEEcCccCceeEEeccc--ccc-------cCCCcEEEcC-----CCcEEecccccCCCceEEEEEe
Confidence            4578899999999999998888899997633  222       2366888773     6699999999999999999995


Q ss_pred             CC--CCeeEEEEeceecccc
Q psy14080         94 PY--TTTSHSQNAPGLGDLL  111 (113)
Q Consensus        94 ~~--~~~s~~~~L~V~g~~~  111 (113)
                      ..  ...++.+.|.|+++..
T Consensus       214 ~g~~~r~S~~a~ltv~s~~~  233 (1381)
T KOG4221|consen  214 GGASQRTSNEAELTVLSDPG  233 (1381)
T ss_pred             cCCcCCccceeEEEecCCcc
Confidence            33  4558899999997654

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.76  E-value=1.5e-07  Score=56.45  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=47.1

Q ss_pred             cEEEEEEEcc-CCCCEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC---CC
Q psy14080         23 FSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP---YT   96 (113)
Q Consensus        23 ~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~---~~   96 (113)
                      ++.|.|.+.+ .|.+.|.|+|.  +..+..+..  ....++.+..      ....|.|...+.+|.|.|.|.+..   ..
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~--g~~l~~~~~~~~~~~~~~~~~------~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRD--GEVLDGATYSKELLKDGKRET------TVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEEC--CEEccCceeeeeEecCCCeEE------EEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999987 47779999983  333322111  0011111111      123788988888999999999943   23


Q ss_pred             CeeEEEEece
Q psy14080         97 TTSHSQNAPG  106 (113)
Q Consensus        97 ~~s~~~~L~V  106 (113)
                      ..+..+.|.|
T Consensus        73 ~~~~s~~l~v   82 (82)
T cd05759          73 GKETSVTLDV   82 (82)
T ss_pred             CcEEEEEEcC
Confidence            4566677654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.66  E-value=3.4e-07  Score=56.29  Aligned_cols=78  Identities=14%  Similarity=0.108  Sum_probs=56.2

Q ss_pred             eEEEecCCcEEEEEEEccCCC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      +-.+..|++++|.|.....+.  +.|.|....              +.+...   ...+..+|.+.++...|+|+.+|.+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~--------------n~~~~~---~~~~~ktL~~~qv~~qdSG~WtC~V   70 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPG--------------NKSKQI---LNQDKKTLNLVQLGPNDSGTWDCIV   70 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCC--------------Ccccee---ccCCccEEEeceeCcccCCEEEEEE
Confidence            346788999999999965444  489996543              222221   1235679999999999999999999


Q ss_pred             cCCC-CeeEEEEeceecc
Q psy14080         93 QPYT-TTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~~-~~s~~~~L~V~g~  109 (113)
                      ..+. ......++.|+|+
T Consensus        71 ~~~~k~~~~~~~V~Vl~f   88 (88)
T cd07694          71 SVNSSEKTLKLDIKVLAF   88 (88)
T ss_pred             EECceEEEEEeeEEEEeC
Confidence            6544 4457777778774

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.64  E-value=4.8e-07  Score=54.86  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=47.4

Q ss_pred             EEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC----CCe
Q psy14080         24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY----TTT   98 (113)
Q Consensus        24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~----~~~   98 (113)
                      +.|.|...+. |.+.+.|||.+  ..|......-..+.+|..       ..+|+|.-...+|.+.|+|.+...    ...
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~--~~l~~~~~~~~~~~~~t~-------~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~   72 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDR--KELKGVISQQENGKTVSV-------SNTIRFPVDRKDDGAILSCEASHPALVSQKK   72 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECC--EECCCCcccccCCceEEE-------EEEEEEEeeeccCCcEEEEEEEChhhCCCCe
Confidence            7899998755 67899999843  333211111112344443       348999999999999999999532    234


Q ss_pred             eEEEEece
Q psy14080         99 SHSQNAPG  106 (113)
Q Consensus        99 s~~~~L~V  106 (113)
                      .....|.|
T Consensus        73 ~~~~~l~V   80 (80)
T cd05885          73 QTQYSLDV   80 (80)
T ss_pred             eEEEEEeC
Confidence            45555544

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd00096 Ig Immunoglobulin domain

Probab=98.62  E-value=9e-08  Score=53.09  Aligned_cols=65  Identities=20%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             EEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         24 SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        24 a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +.|.|.+.+.+...+.|+++........  ..     +...........+.|.|.+++.+|+|.|.|.+...
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   65 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSV--LT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS   65 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcc--cE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence            4699999987778999999752111000  00     00000112235779999999999999999999654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4222|consensus

Probab=98.47  E-value=3.4e-07  Score=76.68  Aligned_cols=75  Identities=19%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+-.+..|.+++|+|...+.+.+.|+|.|.. .+.|.+....+..+.|..+..     ..+|+|.+++.+|.|.|-|+..
T Consensus       323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg-~q~llf~~~p~~~~~r~svs~-----~g~L~it~v~~~d~g~Yvcq~~  396 (1281)
T KOG4222|consen  323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEG-SQDLLFSASPPSSNGRGSVSP-----TGTLTITNVRQSDEGYYVCQTQ  396 (1281)
T ss_pred             CccccccCceEEeeeecCCCCCcceEEeccC-cceecccCCCCCcCccceecC-----CCCcccccccccccceEeeccc
Confidence            3456788999999999999999999998754 444444334455688988873     4499999999999999999974


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      +
T Consensus       397 ~  397 (1281)
T KOG4222|consen  397 T  397 (1281)
T ss_pred             c
Confidence            4

>KOG4222|consensus

Probab=98.34  E-value=5.1e-07  Score=75.68  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=69.5

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      .+..+.+|+.+.+.|++.+.+.+.|.|-| +++.+         .-.||.+..    .+.+|+|.++++.|+|.|.|-. 
T Consensus       233 ~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~---------P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~  298 (1281)
T KOG4222|consen  233 KDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSL---------PRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAE  298 (1281)
T ss_pred             ccceeecccccccccccCCCCCCceeeec-cCCCC---------Cccceeeee----ccccccccccCCCcccceeeecc
Confidence            45678899999999999999999999976 33222         256898875    3579999999999999999999 


Q ss_pred             cCCCCeeEEEEeceeccccc
Q psy14080         93 QPYTTTSHSQNAPGLGDLLM  112 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g~~~~  112 (113)
                      +..+..+..+.|.|.+..-|
T Consensus       299 n~vG~l~asa~ltV~apP~f  318 (1281)
T KOG4222|consen  299 NLVGGLEASATLTVQAPPSF  318 (1281)
T ss_pred             ccccccccccceEEecCccc
Confidence            45688888899999886543

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.27  E-value=3.4e-06  Score=51.55  Aligned_cols=67  Identities=21%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             cCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .|++++|.|.+.+. + ...|.|+|.  +..+..+.    .....++.|.+.       ..|.|...+..|.|.|.|.+.
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~--g~~~~~~~~~~~~~~~~~gt~~~~-------s~l~v~~~~~~~~~~y~C~v~   82 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKN--GKELTSGVTTTPPVPNSDGTYSVS-------SQLTVSPSDWNSGDTYTCVVT   82 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEEC--CEECCCceeccccccCCCCCEEEE-------EEEEECHHHhCCCCCEEEEEE
Confidence            58899999999987 4 458999984  32222111    111234444442       267777777789999999996


Q ss_pred             CC
Q psy14080         94 PY   95 (113)
Q Consensus        94 ~~   95 (113)
                      ..
T Consensus        83 h~   84 (95)
T cd00098          83 HE   84 (95)
T ss_pred             eC
Confidence            43

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>KOG4194|consensus

Probab=98.21  E-value=4.6e-06  Score=66.82  Aligned_cols=69  Identities=17%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             EEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         16 STGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      ..|..|+++.|.|...+.+. +.+.|+|++.+..++         +|-..    ..++--|.+.+...+|+|.|+|.++ 
T Consensus       716 ~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t---------~rh~f----~d~dQllvv~~~~~~daG~yTcem~~  782 (873)
T KOG4194|consen  716 QLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT---------ERHTF----PDGDQLLVVKENLVEDAGIYTCEMSN  782 (873)
T ss_pred             eEEEecceEEEEEecCCCCCCccccccCCCCceEEe---------ecccC----CCCCeEEEEEehhhhhcceEEEEEEe
Confidence            46788999999999998765 899999987554442         22222    2356688999999999999999995 


Q ss_pred             CCCC
Q psy14080         94 PYTT   97 (113)
Q Consensus        94 ~~~~   97 (113)
                      +.+.
T Consensus       783 ~~~~  786 (873)
T KOG4194|consen  783 TLGT  786 (873)
T ss_pred             eccc
Confidence            4443

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.19  E-value=4.8e-05  Score=46.29  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             EEEEEEEccC-CCCEEEEEecCCCeEEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC--CCCee
Q psy14080         24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP--YTTTS   99 (113)
Q Consensus        24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~--~~~~s   99 (113)
                      +.|.|..+++ |...|.|||.+  ..+..... .....++|...       .+|.+.--...|...|.|.+..  ....+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~--~~l~~~~~~~~~~~~~~t~~-------S~L~~~p~~eDdG~~~~C~a~~~~l~~~~   72 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGN--KELTGKSTVEETWSRMFTVT-------SQLMLKVTKEDDGVPVICLVDHPAVKDLQ   72 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECC--EECcCcccceeccCCCcEEE-------EEEEEECchhhCCCEEEEEEcCcccCCce
Confidence            6799999876 66799999843  33321111 11123345443       3888888888899999999943  23356


Q ss_pred             EEEEecee
Q psy14080        100 HSQNAPGL  107 (113)
Q Consensus       100 ~~~~L~V~  107 (113)
                      ....|.|.
T Consensus        73 ~~~~L~V~   80 (82)
T cd05883          73 TQRYLEVQ   80 (82)
T ss_pred             eeEEEEEE
Confidence            67777764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.18  E-value=6e-05  Score=49.46  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC-CC-CEEEEEecCCC-eE---EEec----ceEEcCCCCEEEEEeCCCCcE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI-VK-VRVSWVRRRDW-HI---LTSG----VLTYTNDARFQVIHTDGSDDW   73 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~~-~~V~W~k~~~~-~~---l~~~----~~~~~~~~R~~~~~~~~~~~~   73 (113)
                      +|+.+.... ......+|+.+.|.|.+.+. +. ..|.|+|.... ..   ...+    ......|+.|.+.       .
T Consensus        37 ~~P~v~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~-------s  108 (139)
T cd05771          37 EPPRVRLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS-------S  108 (139)
T ss_pred             cCCceEEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE-------E
Confidence            445443332 23344479999999999986 43 47999996522 11   1111    1112345556553       2


Q ss_pred             EEEEccCCCCCCEEEEEeecC
Q psy14080         74 NLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +|.|..-...+.+.|.|.+..
T Consensus       109 ~L~v~~~~~~~g~~ytC~V~H  129 (139)
T cd05771         109 HLTLEPGTEDAGATYTCRVSH  129 (139)
T ss_pred             EEEecCCccCCCCEEEEEEEc
Confidence            778776666677899999954

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.14  E-value=5.6e-05  Score=45.75  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             EEEEEEEccC-CCCEEEEEecCCCeEEEecceE--EcCC-CCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC----C
Q psy14080         24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLT--YTND-ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP----Y   95 (113)
Q Consensus        24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~--~~~~-~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~----~   95 (113)
                      +.|.|.+.+. |...|.|+|.+  ..+..+...  ...+ ..|++.       .+|.|.-....|.+.|.|++..    .
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g--~~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGD--QELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECC--EECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEECcccCC
Confidence            6899999886 67799999843  332211100  0112 233332       3677766677788999999953    2


Q ss_pred             CCeeEEEEece
Q psy14080         96 TTTSHSQNAPG  106 (113)
Q Consensus        96 ~~~s~~~~L~V  106 (113)
                      +..+....|.|
T Consensus        73 ~~~~~~~~~~~   83 (83)
T cd07705          73 SDRSTSQRIEV   83 (83)
T ss_pred             CCceeEEEeeC
Confidence            45566666654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.12  E-value=3.6e-06  Score=55.32  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             EEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         74 NLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      +|+|++++.+|+|+|+|.+... +..+..+.|.|...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~   38 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP   38 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC
Confidence            7999999999999999999543 56677788888653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.02  E-value=7.2e-05  Score=44.99  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=37.7

Q ss_pred             EEEEEEEccC-CCCEEEEEecCCCeEEEecc-eE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGV-LT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~-~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      +.|.|.+.+. |.+.|.|||..  ..+.... .. ...+..|.+.       ..|.+.-....|.+.|.|.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~-------s~l~~~~~~~d~g~~~~C~v~   65 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGD--KELKGVKLKEEDENGKTFTVT-------SSLRFQVDREDDGAPIICRVD   65 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECC--EEccCceeeEecCCCCEEEEE-------EEEEEEcchhhCCCEEEEEEe
Confidence            6899999876 66799999853  2222110 00 1122344432       256766666677789999995

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.91  E-value=0.0001  Score=46.41  Aligned_cols=70  Identities=10%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             EEEecCCcEEEEEEEccC-CCCE--EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         16 STGFLAVFSYSDKTVRDI-VKVR--VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-~~~~--V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.+|+..+|.|.+.+. |...  |.|||.+  ..+............       .....+|.+.--...|.+.|.|.+
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~--~~l~~~~~~~~~~~~-------~~~~stlt~~~~r~D~g~~~sC~A   81 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGN--ETLSRQPFGDNTKSP-------VNAPATITITVDREDHGANFSCET   81 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCC--EEcccceeccccCCC-------ceeEEEEEEecchhhCCcEEEEEE
Confidence            356899999999999975 4444  7999843  333211000000111       113457787766677777999999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        82 ~l   83 (100)
T cd05755          82 EL   83 (100)
T ss_pred             Ee
Confidence            53

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.83  E-value=0.00045  Score=42.44  Aligned_cols=62  Identities=16%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             CCcEEEEEEEccC-CC-CEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDI-VK-VRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~-~~-~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      |+.++|.|.+.+. +. -.|.|+|...  .+..+.    .....|.-|...       ..|.|   ..+|.+.|.|.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~--~~~~~~~~~~~~~~~d~ty~~~-------s~l~v---~~~~~~~ytC~V~H   81 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGE--DSVDDVESGEILPNGDGTYQLW-------VTLEV---PPEDKARYSCRVEH   81 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCE--ECcccccccceEECCCCeEEEE-------EEEEE---CCCCCCEEEEEEEe
Confidence            7889999999986 33 3889998541  111110    001112222221       13443   34589999999953

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.78  E-value=0.00047  Score=40.68  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=40.7

Q ss_pred             cEEEEEEEccC--CCCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         23 FSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        23 ~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +++|.|.+.+.  +...|.|+|..  ..+..+..    ....+..|.+.       ..|.|......+...|.|.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g--~~~~~~~~~~~~~~~~~gt~~~~-------s~L~v~~~~~~~~~~~tC~V~H   69 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNG--QEVTSGVSTTDPLKNSDGTYFLS-------SYLTVSASTWESGDTYTCQVTH   69 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECC--EECCCCEEECceEECCCCCEEEE-------EEEEEccccCCCCCEEEEEEEE
Confidence            47899999987  33589999842  22222111    11235555543       2677777778889999999953

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.74  E-value=0.0003  Score=44.68  Aligned_cols=89  Identities=18%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCC-----eEEEecc--eEEc---CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW-----HILTSGV--LTYT---NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~-----~~l~~~~--~~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+...-|+++.|.=.-.......|.|.++...     .+|+-.+  ....   .+.||...    ..++.|.|+.+|++|
T Consensus         7 ~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~----~enlaLlIkaAq~qD   82 (108)
T PF11465_consen    7 HVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT----SENLALLIKAAQPQD   82 (108)
T ss_dssp             EEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE----TTTTEEEESS-SGGG
T ss_pred             ceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee----ccCceEEEeecCccc
Confidence            35566788888872212223468999887531     2443221  1111   24688776    368999999999999


Q ss_pred             CEEEEEeec-CCCCe-eEEEEecee
Q psy14080         85 NGTYECQAQ-PYTTT-SHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~-s~~~~L~V~  107 (113)
                      +|.|.=.+. ..+.. ...+++.|.
T Consensus        83 SG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   83 SGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             -EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             CceEEEEEEcCCCcEEEEEEEEEee
Confidence            999999994 44443 455555553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.70  E-value=2.4e-05  Score=51.43  Aligned_cols=87  Identities=10%  Similarity=0.043  Sum_probs=48.6

Q ss_pred             EEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecce--EE--cCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         17 TGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVL--TY--TNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~--~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ...=++++.|||.+.+.     +...|.|..++ ..++.++..  ..  ..-++..+ ..-.+++.+|.+...+.- .|.
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~-~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~Gn   99 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKN-KDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGN   99 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETT-EEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECC-eEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccc
Confidence            34558999999999762     34679998754 334443211  11  11234444 223457889999997766 999


Q ss_pred             EEEeec-CCCCeeEEEEece
Q psy14080         88 YECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        88 Y~C~~~-~~~~~s~~~~L~V  106 (113)
                      |+|.+. .....+..+.|..
T Consensus       100 YTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  100 YTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEEEE
Confidence            999995 4345566667765

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.69  E-value=0.0008  Score=43.02  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecceEE--cCC-CCEEEEEeCCCCcEEEEEccCCCCCC-EEEE
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVLTY--TND-ARFQVIHTDGSDDWNLQIKFLQKRDN-GTYE   89 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~~~--~~~-~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~   89 (113)
                      .....|+.++|.|.+.+..  .-.|.|+|.  +..+..+....  ..+ ..|.+.       .+|.+.- ...|. ..|.
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kn--g~~~~~~~~~~~p~~d~~ty~~~-------S~L~~~~-~~~d~~~~yt   85 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKN--GNELSAEQPNITPEGDSVSYNVT-------STVQVKL-TEDDVHSQVT   85 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEEC--CEECcccccceeeCCCCCcEEEE-------EEEEEEC-ccccccCceE
Confidence            3455789999999999863  358999983  33332211111  122 244442       2566554 34444 4699


Q ss_pred             EeecC
Q psy14080         90 CQAQP   94 (113)
Q Consensus        90 C~~~~   94 (113)
                      |.+..
T Consensus        86 C~V~H   90 (111)
T cd05772          86 CEVQH   90 (111)
T ss_pred             EEEEe
Confidence            99954

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA02982 hypothetical protein; Provisional

Probab=97.64  E-value=0.0002  Score=50.73  Aligned_cols=78  Identities=12%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             eEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEe---cceEE------cCC--CCEEEEEeCCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTS---GVLTY------TND--ARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~---~~~~~------~~~--~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++.+.+|+++.|.|.+.+..+ ..+.|++ ++...|..   +....      ..+  ..+.+.  -+.+..+|+|+++.+
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~-~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i  109 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKG-DAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDP  109 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeC-CCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCc
Confidence            456778999999999876543 4678987 33333321   11111      111  233333  245678999999999


Q ss_pred             CCCEEEEEeecCC
Q psy14080         83 RDNGTYECQAQPY   95 (113)
Q Consensus        83 ~D~G~Y~C~~~~~   95 (113)
                      +..|.|+|++...
T Consensus       110 ~N~GCYtc~~ks~  122 (251)
T PHA02982        110 QNLGCFTCEAKDA  122 (251)
T ss_pred             ccCCceEEEEecC
Confidence            9999999999764

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.59  E-value=0.0019  Score=40.06  Aligned_cols=64  Identities=9%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             EecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         18 GFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +..|+.++|.|.+.+.-  .-.|.|.|.  +..+. +..    ....|..|++..       .|.|.   +++...|.|.
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~d--g~~~~-~~~~~~~~p~~d~tyq~~s-------~l~~~---~~~~~~ysC~   78 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKN--GVKIP-KVEQSDLSFSKDWTFYLLK-------STEFT---PTKGDEYACR   78 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEEC--CEECC-CcEECcEEECCCCCEEEEE-------EEEEC---CCCCCeEEEE
Confidence            34578889999999863  457899873  33333 211    123355555431       44443   6788999999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus        79 V~H   81 (93)
T cd05770          79 VRH   81 (93)
T ss_pred             EEE
Confidence            954

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.59  E-value=0.00053  Score=42.87  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .++.++|.|.+.+..  .-.|.|+|.+  ..+..+    ......|..|++.       ..|.+..-.-.+...|.|.+.
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~~sC~V~   86 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDG--ATVSSGVQTSTTEQQSDNTYSLS-------SYLTLTKSDWNKHKVYTCEVT   86 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECC--EECcccEeccccEECCCCCEEEE-------EEEEEcHHHhCCCCeEEEEEE
Confidence            467899999999863  4578999843  222111    1111235566653       266666555556899999995


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        87 H   87 (100)
T cd07699          87 H   87 (100)
T ss_pred             e
Confidence            3

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02633 hypothetical protein; Provisional

Probab=97.58  E-value=0.00015  Score=41.70  Aligned_cols=38  Identities=16%  Similarity=0.051  Sum_probs=28.4

Q ss_pred             CcEEEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080         71 DDWNLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLG  108 (113)
Q Consensus        71 ~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g  108 (113)
                      +...|-|-++..+|+|+|.|.+... .-....++|.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            4558999999999999999999643 3344556666653

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.51  E-value=0.0011  Score=40.15  Aligned_cols=61  Identities=11%  Similarity=0.163  Sum_probs=38.8

Q ss_pred             EEEEEEEccC-CCCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         24 SYSDKTVRDI-VKVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        24 a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      +.|.|.+.+. |...|.|+|..  ..+.....   ....+..|...       .+|.|..-...|...|.|.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng--~~l~~~~~~~~~~~~~~t~~~~-------s~L~~~~~~~d~g~~ytC~v~   66 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKND--KEIKDVKYLKEEDANRKTFTVS-------STLDFRVDRSDDGVAIICRVD   66 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECC--EECcCceeeEeeCCCCCEEEEE-------EEEEEEcccccCCCEEEEEEe
Confidence            6799999875 55789999843  33221111   11223445443       377777666778999999995

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.0018  Score=40.25  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             ecCCcEEEEEEEccC-C--CCEEEEEecCCCeEEEecc--eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         19 FLAVFSYSDKTVRDI-V--KVRVSWVRRRDWHILTSGV--LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~-~--~~~V~W~k~~~~~~l~~~~--~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..|++++|.|.+.+. .  .-.|.|.|.++ ..+....  .....|.-|.+.       ..|.+..-+-.+...|.|.+.
T Consensus        12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~-~~~~~~~~~~~~~~dgty~~~-------s~l~v~~~~w~~g~~ysC~V~   83 (96)
T cd07696          12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSG-EPVKASIQPPESHNNATLSVT-------STLNVSTDDWISGDTFQCKVT   83 (96)
T ss_pred             ccCCCeEEEEEEeCCCCCCCcEEEEEECCe-EeeeEEecccccCCCCCEEEE-------EEEEeCHHHccCCCcEEEEEE
Confidence            457899999999988 3  34789998532 2221111  111234455543       256655544445679999995


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        84 H   84 (96)
T cd07696          84 H   84 (96)
T ss_pred             C
Confidence            4

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.36  E-value=0.0027  Score=39.29  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             ecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         19 FLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .+|+.++|.|.+.+.-  .-.|.|+|..  ..+..+    ......|..|.+..       .|.+.   .++...|.|.+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~dgTy~~~s-------~L~~~---~~~~~~ysC~V   79 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNG--QEETEGVVSTELIPNGDWTYQILV-------MLETT---PSRGDTYTCVV   79 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECC--eecCCCceecceEECCCCcEEEEE-------EEEEc---CCCCCEEEEEE
Confidence            4689999999999863  3378999853  222211    11112344555431       44443   45777999999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        80 ~H   81 (94)
T cd05766          80 EH   81 (94)
T ss_pred             Ee
Confidence            64

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.28  E-value=0.0077  Score=37.32  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             ecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         19 FLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..|+.++|.|.+.+. | +-.|.|.|.  +..+..+    ......|..|...       ..|.|.   +++...|.|.+
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~--g~~~~~~~~~~~~~~~~Dgty~~~-------s~L~v~---~~~~~~ytC~V   80 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKN--GVPVTDGVSETRYYPRQDLSFQKF-------SYLNFT---PEEGDIYSCIV   80 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEEC--CeEccCceEEeeeEeCCCCcEEEE-------EEEEEE---CCCCCeEEEEE
Confidence            346778999999986 3 357899874  3332221    1122345666653       145554   45677999999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        81 ~H   82 (94)
T cd05767          81 EH   82 (94)
T ss_pred             Ee
Confidence            64

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.21  E-value=0.0089  Score=35.86  Aligned_cols=67  Identities=10%  Similarity=0.075  Sum_probs=41.1

Q ss_pred             CCcEEEEEEEc-cCCCCEEEEEecCCCe-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVR-DIVKVRVSWVRRRDWH-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      |+.+.|.|... +.|.+.|.|+...... ...........+..|.+.       .+|.+..-...+...+.|.+..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------S~l~~~~~~~~~~~~~~C~~~~   82 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS-------STLTLTPTREDHGKTLTCRASH   82 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE-------EEEEEETTGGGTTEEEEEEEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE-------EEEEEEcChHHCCeEEEEEEEC
Confidence            67999999876 4577899999754322 011111122334555543       2666665556788889999964

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.20  E-value=0.0035  Score=40.35  Aligned_cols=67  Identities=18%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEc-CCCCEEEEEeCCCCcEEEEEccCCCCC-CEEEEEe
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYT-NDARFQVIHTDGSDDWNLQIKFLQKRD-NGTYECQ   91 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~-~~~R~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~   91 (113)
                      .++.++|.|.+.+.-  .-.|.|+|.  +..+..+..    ... .+.-|.+.       ..|.|...+-.| ...|.|.
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kn--g~~l~~g~~~~~~~~~~~~gTYs~~-------S~L~v~~~~w~~~~~~ytC~   87 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVN--GKEVTDGVATDPQALRENTSTYSIS-------SRLRVSATEWFNPRNTFTCI   87 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEEC--CEECCCCcccccceecCCCCeEEEE-------EEEEEChHHhccCCCeEEEE
Confidence            467899999999863  247899884  322222211    001 11344432       266766555434 7899999


Q ss_pred             ecCC
Q psy14080         92 AQPY   95 (113)
Q Consensus        92 ~~~~   95 (113)
                      +...
T Consensus        88 V~H~   91 (115)
T cd05769          88 VQFY   91 (115)
T ss_pred             EEEe
Confidence            9643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.13  E-value=0.0063  Score=37.67  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=40.2

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +.++.|.|.+.+.-  .-.|.|+|.  +..+..+.    .....++.|.+.       ..|.|..-+-.+...|.|.+..
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~d--g~~~~~~~~~s~~~~~~~~Ty~~~-------S~L~v~~~~w~~~~~ytC~V~H   84 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVD--GQVATLVAASTAPQKEEGSTFSTT-------SELNVTQEDWKSGKTYTCKVTH   84 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEEC--CEECcCceeecccEECCCCcEEEE-------EEEEEchHHhcCCCeEEEEEEE
Confidence            46699999999863  357899873  33221111    112234455543       2666665555578999999964


Q ss_pred             C
Q psy14080         95 Y   95 (113)
Q Consensus        95 ~   95 (113)
                      .
T Consensus        85 ~   85 (94)
T cd05847          85 Q   85 (94)
T ss_pred             C
Confidence            3

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.05  E-value=0.0059  Score=36.48  Aligned_cols=63  Identities=17%  Similarity=0.320  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+++++|.|.+.+. + +-.|.|+|.+  ..+..+    ......|+.|.+..       .|.|.   ..+...|.|.+.
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~--~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~   74 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNG--KEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVT   74 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETT--EEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEecc--ceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEE
Confidence            37899999999976 3 3379998743  222111    01113466676542       56665   566669999995


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        75 H   75 (83)
T PF07654_consen   75 H   75 (83)
T ss_dssp             E
T ss_pred             E
Confidence            4

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.03  E-value=0.02  Score=35.58  Aligned_cols=77  Identities=9%  Similarity=0.032  Sum_probs=47.1

Q ss_pred             CCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC---C
Q psy14080         21 AVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY---T   96 (113)
Q Consensus        21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~---~   96 (113)
                      -....+.|... +.|...|.|++...+..-.  ......+++|.+.       .+|.+.--...|...|.|++...   .
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~-------S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVT-------SEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEE-------EEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            35678999887 4577899999852221111  1112235566654       26777777778888999999642   3


Q ss_pred             CeeEEEEece
Q psy14080         97 TTSHSQNAPG  106 (113)
Q Consensus        97 ~~s~~~~L~V  106 (113)
                      .....+.|.|
T Consensus        86 ~~~~~~~l~v   95 (95)
T cd07703          86 PQLLPVTLSV   95 (95)
T ss_pred             CeEEEEEEeC
Confidence            4445555543

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.01  E-value=0.019  Score=35.96  Aligned_cols=87  Identities=7%  Similarity=-0.157  Sum_probs=56.5

Q ss_pred             eecceEEEecCCcEEE-EEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         11 AFGQISTGFLAVFSYS-DKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L-~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ..|..+.+.+|+.+.+ .|...+ .|...|.|++...+.. .. ......++.|.+.       .+|.+..-...|.-.+
T Consensus         6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~-~~~~~~ngT~TV~-------S~~~l~p~r~d~G~~v   76 (97)
T cd07704           6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ES-HSQEHPNGTTTVT-------SEYIWVPSRHANGHPL   76 (97)
T ss_pred             CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ce-eeecCCCCCEEEE-------EEEEEEeCHHHCCcEE
Confidence            3455667788999999 999875 4678999997533321 10 1112235677765       2677777778899999


Q ss_pred             EEeecCC---CCeeEEEEece
Q psy14080         89 ECQAQPY---TTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~~~---~~~s~~~~L~V  106 (113)
                      .|.++..   ......+.|.|
T Consensus        77 tC~V~H~al~~~~~~~~~L~V   97 (97)
T cd07704          77 TCVVSHPALQQDFRITHILNV   97 (97)
T ss_pred             EEEEeCcccCCCceeeEEeeC
Confidence            9999642   24455556654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.97  E-value=0.0013  Score=47.97  Aligned_cols=48  Identities=17%  Similarity=0.322  Sum_probs=36.5

Q ss_pred             CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         34 VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        34 ~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+|...|...+ +..+       ..+.++.+.     ..+.|.+.+.+++|||.|+|.++.
T Consensus        11 iDP~y~W~GP~-g~~l-------~gn~~~nIT-----~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPN-GKPL-------SGNSYVNIT-----ETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCC-Cccc-------CCCCeEEEc-----cCceEEeeccccccCCceEEEEEE
Confidence            46778897643 3443       246677776     467899999999999999999953

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.83  E-value=0.0034  Score=36.85  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+|.|.|..    +..|.|+| . ..+.              -.     ++-+|.+-++...=.|+|.|..+.
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G-~~~~--------------~~-----~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-G-KEIL--------------EV-----SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-C-cccc--------------cc-----cccEEeccCcccCCCcceEecCcc
Confidence            3579999965    24699998 2 2111              00     134777788888999999999855

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.75  E-value=0.0088  Score=34.77  Aligned_cols=50  Identities=12%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             ecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         19 FLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..|.+|+|+|.....   .+.|+|.+  ..+.      ..+.             .+...+-. +++|.|.|...
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~--~~~~------g~~~-------------~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKND--QVSQ------GSDE-------------KYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCC--ccCC------CCCc-------------eEEeeccC-CCCceEEEEeC
Confidence            348999999986632   29998743  1110      0111             22222333 99999999984

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.60  E-value=0.014  Score=45.11  Aligned_cols=82  Identities=17%  Similarity=0.055  Sum_probs=55.6

Q ss_pred             ceEEEecCCcEEEEEEEccCC---CCEEEEEecC---CCeEEEecc-----eEEcCCCCEEEEEe----CCCCcEEEEEc
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV---KVRVSWVRRR---DWHILTSGV-----LTYTNDARFQVIHT----DGSDDWNLQIK   78 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~---~~~~l~~~~-----~~~~~~~R~~~~~~----~~~~~~~L~I~   78 (113)
                      .++++..|.++.|.|.++..+   -....|+-..   ++.+-+.-.     ..+..++.|.+...    .+-.+.+|+|+
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            347788899999999998644   3456898654   122211110     01234667776532    34456799999


Q ss_pred             cCCCCCCEEEEEeecCC
Q psy14080         79 FLQKRDNGTYECQAQPY   95 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~   95 (113)
                      ++..+..|.|.|++...
T Consensus       352 ka~I~N~GCY~~~a~~g  368 (500)
T PHA02914        352 KAHINNAGCYEAQAFMG  368 (500)
T ss_pred             eEEEEcCCceEEEEecC
Confidence            99999999999999653

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.58  E-value=0.041  Score=34.23  Aligned_cols=64  Identities=8%  Similarity=0.038  Sum_probs=35.2

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +..++|.|.+.+.-  .-.|.|.|.+  ..+..+..   ....++.|...       ..|.|..-+  +...|.|.+...
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng--~~~~~~~~~~~~~~~~dty~~~-------S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGN--SPSILGSQKSEKDKDNDVYSTT-------SWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECC--EECcCCeEeccEecCCCEEEEE-------EEEEECchh--CCCeEEEEEEEC
Confidence            56799999999863  3468998743  22222211   11122245443       255554332  234599999643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.56  E-value=0.014  Score=36.62  Aligned_cols=66  Identities=11%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc---eEEc----CCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV---LTYT----NDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~---~~~~----~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      .|+.++|.|.+.+..  .-.|.|+|..  ..+..+.   ....    .|.-|.+.       ..|.|..-.-.+...|.|
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g--~~~~~~~~~~~~~~~~~~~dgTy~~~-------s~L~v~~~~w~~~~~ytC   85 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNG--QPLSKQKYVTTAPMQEPGGNESYFLY-------SKLTVSAEDWNAGDVFTC   85 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECC--EECCcccccccCcccccCCCCeEEEE-------EEEEEcHHHhcCCCcEEE
Confidence            468899999999863  3467998853  2211100   0000    12334332       256654443456778999


Q ss_pred             eecC
Q psy14080         91 QAQP   94 (113)
Q Consensus        91 ~~~~   94 (113)
                      .+..
T Consensus        86 ~V~H   89 (102)
T cd05768          86 VVGH   89 (102)
T ss_pred             EeEe
Confidence            9954

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=96.53  E-value=0.0038  Score=48.98  Aligned_cols=82  Identities=13%  Similarity=-0.093  Sum_probs=55.7

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCC--CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRD--WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~--~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      .+..|+++.++|-+.+.+.+.|.|-|+..  ..+....+.   .-+|..+.     +...|.|-|...+|+|.|.|.+. 
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq---~~e~p~vt-----stcql~ic~ewq~~a~w~tCs~rc  278 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ---TVENPVVT-----STCQLVICNEWQADAGWYTCSARC  278 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCcc---ccCCccee-----eeeeEEEcchhhcCCCceeecccc
Confidence            35679999999999999999999987652  222211111   11233333     46799999999999999999994 


Q ss_pred             CCCCeeEEEEece
Q psy14080         94 PYTTTSHSQNAPG  106 (113)
Q Consensus        94 ~~~~~s~~~~L~V  106 (113)
                      -.+...+.+.+.+
T Consensus       279 g~g~~~rdv~c~s  291 (560)
T KOG4597|consen  279 GAGFLRRDVPCSS  291 (560)
T ss_pred             ccceeeccceeee
Confidence            4455454454443

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.22  E-value=0.044  Score=34.40  Aligned_cols=68  Identities=9%  Similarity=0.018  Sum_probs=37.5

Q ss_pred             cCCcEEEEEEEccCC---CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         20 LAVFSYSDKTVRDIV---KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~---~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      .+++|+|.|.+.+..   +-.|.|.+........ .......|.-|.+.       ..|.|..-+=+-...|.|.+...
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~-------S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVS-------SVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEE-------EEEEeCHHHhcCCCeEEEEEECC
Confidence            578999999999864   3478998754221100 00011224555543       25555422212234599999643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.03  E-value=0.052  Score=33.61  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .++.++|.|.+.+..  .-.|.|+|..  .. ..+..    ....|+.|...       ..|.|..-+-.....|.|.+.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g--~~-~~~~~~~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~ytC~V~   84 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGS--NS-TSGVKTYPAVLQSGGLYTAS-------SQLTVPASEWKGKESFYCKVE   84 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECC--EE-CCCcEECCCEeCCCCCEEEE-------EEEEEeHHHcCCCCcEEEEEE
Confidence            356799999999863  3478998843  22 22211    11125566543       255555433223678999996


Q ss_pred             CCC
Q psy14080         94 PYT   96 (113)
Q Consensus        94 ~~~   96 (113)
                      ..+
T Consensus        85 H~~   87 (95)
T cd04985          85 HPS   87 (95)
T ss_pred             eCC
Confidence            543

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.97  E-value=0.18  Score=31.20  Aligned_cols=77  Identities=8%  Similarity=0.007  Sum_probs=46.8

Q ss_pred             CCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC---C
Q psy14080         21 AVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY---T   96 (113)
Q Consensus        21 G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~---~   96 (113)
                      .....+.|... +.|...|.|++...+.....  .....++.|.+.       .+|.+.-....|...|+|++...   .
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~--~~~~~~g~~tv~-------S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQ--SKENPNGTVTVT-------SEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeE--eecCCCCCEEEE-------EEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            35677899986 55788999998422211110  011224445553       27777777778888999999532   3


Q ss_pred             CeeEEEEece
Q psy14080         97 TTSHSQNAPG  106 (113)
Q Consensus        97 ~~s~~~~L~V  106 (113)
                      .....+.|.|
T Consensus        86 ~~~~~~~L~V   95 (95)
T cd05719          86 PQRFSVTLNV   95 (95)
T ss_pred             CeEEEEEeeC
Confidence            4455555554

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03042 CD47-like protein; Provisional

Probab=95.49  E-value=0.14  Score=37.66  Aligned_cols=57  Identities=14%  Similarity=0.254  Sum_probs=35.6

Q ss_pred             cCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      =.+++.++|.+.+.     .+..|.|...+ ..++..+               .. +..+|+....+ .=.|.|+|.+..
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~n---------------~t-n~aSL~~~f~~-~l~GNYTCEv~~   91 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKKN---------------NT-NTSSLKFNFSK-NLSGNYTCEAIN   91 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEec---------------CC-cceEEEEeccc-cCCCceeEEEee
Confidence            37899999999864     45679996532 2222221               11 23466655444 338999999953

>KOG1480|consensus

Probab=95.42  E-value=0.006  Score=50.34  Aligned_cols=78  Identities=19%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             EEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-C
Q psy14080         17 TGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P   94 (113)
Q Consensus        17 tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~   94 (113)
                      -|..+...+|+|+.. +.+...+.|+|+...  ..       .+.-+...     ....|+|..+.+.|+|.|+|++. .
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~-------pd~n~~~~-----~d~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--ID-------PDANVIRA-----SDHNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCC--CC-------ccccchhh-----hcCCccccchhhhhcccceeeeehh
Confidence            356788899999986 446678999987521  11       11111111     35589999999999999999994 3


Q ss_pred             CC---CeeEEEEeceec
Q psy14080         95 YT---TTSHSQNAPGLG  108 (113)
Q Consensus        95 ~~---~~s~~~~L~V~g  108 (113)
                      ..   .....+++.|-|
T Consensus       206 ~~~r~~~~~~v~vyv~g  222 (909)
T KOG1480|consen  206 VAKRKSDPATVQVYVNG  222 (909)
T ss_pred             hccccccceEEEEEEcC
Confidence            32   334556665554

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.05  E-value=0.19  Score=31.60  Aligned_cols=25  Identities=8%  Similarity=-0.013  Sum_probs=20.2

Q ss_pred             EecCCcEEEEEEEccCC---CCEEEEEe
Q psy14080         18 GFLAVFSYSDKTVRDIV---KVRVSWVR   42 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~---~~~V~W~k   42 (113)
                      ..+|..+++.|.+.+..   ...|.|+|
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk   39 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLK   39 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEec
Confidence            47899999999998652   34799987

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03240 envelope glycoprotein M; Provisional

Probab=95.04  E-value=0.043  Score=39.09  Aligned_cols=87  Identities=15%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecC-------C--CeEEEe--c----ce-EE---cCCCCEEEEEeCCCCcEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRR-------D--WHILTS--G----VL-TY---TNDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~-------~--~~~l~~--~----~~-~~---~~~~R~~~~~~~~~~~~~L   75 (113)
                      .+++.+|.+++|.=.--..+...|+||++.       +  .+.+-.  .    .. +.   ..+.|+...=    .+++|
T Consensus        32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C----~NstL  107 (258)
T PHA03240         32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC----HNSTL  107 (258)
T ss_pred             ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe----ccceE
Confidence            467788899988754433355689999965       1  122211  1    00 00   1134444331    36799


Q ss_pred             EEccCCCCCCEEEE---Eeec--C-CCCeeEEEEece
Q psy14080         76 QIKFLQKRDNGTYE---CQAQ--P-YTTTSHSQNAPG  106 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~---C~~~--~-~~~~s~~~~L~V  106 (113)
                      .|.+|..+|.|-|.   |...  . .|.++ .+.|.|
T Consensus       108 ~i~~vn~sd~~nYcr~k~~~~g~~e~pt~s-C~~l~~  143 (258)
T PHA03240        108 IIAHLNLSDAGEYCRKKCPPKGDCEFPTMS-CFRLIL  143 (258)
T ss_pred             EEEEEeecCcchhhhccCCCCCCcCCCcce-eeeEee
Confidence            99999999999994   3332  1 24445 477776

>KOG3515|consensus

Probab=94.82  E-value=0.035  Score=45.94  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=42.7

Q ss_pred             eEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         15 ISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ...+.+|++|.|+|++.+. +...+.||....+..           .|+...     .+-+|...+....--+.|.|...
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~~c~a~   79 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATI-----ADPTLVTTGDVRDTVAELNCRAF   79 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCCcceEEEecCcccc-----------cccccc-----cCCceeeecchhhhhhhhhhhhc
Confidence            3467889999999999754 567899998653221           344433     23366666667777777888773

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.22  E-value=1.2  Score=27.32  Aligned_cols=65  Identities=9%  Similarity=0.143  Sum_probs=42.8

Q ss_pred             EEEecCCcEEEEEEEccC-----CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         16 STGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ..+..|.+++..|.+.+.     ....|.|.-  +...        ....||....   ....++++.+.....+..|.|
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl--n~~~--------iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC   79 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKL--NGEK--------IPGSQYRVIN---DTVSSVTLPNLNPTGATLFCC   79 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEEC--SSCE--------STCGCEEEES---TTEEEEEESS--SSEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEE--CCEE--------CChhHcceeC---CeEEEEEEccCCCCCceEEEE
Confidence            367889999999999743     345678843  2222        2466787763   245788999999999999999


Q ss_pred             eec
Q psy14080         91 QAQ   93 (113)
Q Consensus        91 ~~~   93 (113)
                      ...
T Consensus        80 ~l~   82 (89)
T PF06328_consen   80 KLA   82 (89)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            864

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF12988 DUF3872: Domain of unknown function, B

Probab=93.01  E-value=0.38  Score=31.88  Aligned_cols=61  Identities=3%  Similarity=-0.069  Sum_probs=35.4

Q ss_pred             EEecCCcEEEEEEEccCC-----CCEEEEEecCCC-eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV-----KVRVSWVRRRDW-HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~~-~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .+..|++|.++|.+...+     .+.|.||..++. .+-..+...+..++||-+..    ..|.|-=++..
T Consensus        43 ~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~----~~FRLYYTS~s  109 (137)
T PF12988_consen   43 KIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEK----EVFRLYYTSRS  109 (137)
T ss_dssp             S--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-----SEEEEEEEE-S
T ss_pred             ccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCc----CEEEEEEecCC
Confidence            457799999999997544     468999987753 34333445566788887642    46677655544

Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.

>PHA03282 envelope glycoprotein E; Provisional

Probab=92.87  E-value=0.19  Score=39.64  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCCCe---eEEEEece
Q psy14080         59 DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT---SHSQNAPG  106 (113)
Q Consensus        59 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~---s~~~~L~V  106 (113)
                      ++|..+.      +.+|.|.+++++|+|+|+=.+...+..   ...+.|.|
T Consensus       116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V  160 (540)
T PHA03282        116 PPRVAVV------NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV  160 (540)
T ss_pred             CcceeEe------cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence            5677765      557999999999999999998654432   33355554

>PHA03189 UL14 tegument protein; Provisional

Probab=90.17  E-value=5.7  Score=29.99  Aligned_cols=81  Identities=12%  Similarity=-0.035  Sum_probs=42.5

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEE-----EEecCCCeEEEec--c-eEE-------cCCCCEEEEEeCCCCcEEEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVS-----WVRRRDWHILTSG--V-LTY-------TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~-----W~k~~~~~~l~~~--~-~~~-------~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      +....+..|+.++++|.+....=+.|+     -|-......|..+  + ..+       ..+.++++..-.-...++|. 
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt-  137 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT-  137 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE-
Confidence            445678889999999999754322221     1113322222221  1 111       12334444310111234555 


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      -++..+-+|+|.|.+-+
T Consensus       138 F~v~t~taG~Y~CvLrN  154 (348)
T PHA03189        138 FRVSTSTAGMYECVLRN  154 (348)
T ss_pred             EEEEecccceEEEEecc
Confidence            36777889999999943

>PHA03052 Hypothetical protein; Provisional

Probab=89.19  E-value=0.91  Score=26.56  Aligned_cols=28  Identities=14%  Similarity=0.022  Sum_probs=19.7

Q ss_pred             eEEEecCCcEEEEEEEc---cCCCCEEEEEe
Q psy14080         15 ISTGFLAVFSYSDKTVR---DIVKVRVSWVR   42 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~---~~~~~~V~W~k   42 (113)
                      .+.+..|..++|+|+++   +.....|.|.-
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~   36 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWIS   36 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEe
Confidence            34566678899999997   23356788853

>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae

Probab=89.09  E-value=1.1  Score=30.57  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         70 SDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ++..-|+|++.+++|+|.|+=.++-+
T Consensus       121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~  146 (161)
T PF01688_consen  121 ENGVLLRIRNPRPEDSGIYYLRVWLD  146 (161)
T ss_pred             CcceEEEeCCCCcccceEEEEEEEEC
Confidence            45678999999999999999999754

These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part

>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins

Probab=88.70  E-value=0.38  Score=30.95  Aligned_cols=73  Identities=16%  Similarity=0.086  Sum_probs=40.5

Q ss_pred             EEEecCCcEEEEEEEccCCC-------CEEEEEecCC----CeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         16 STGFLAVFSYSDKTVRDIVK-------VRVSWVRRRD----WHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~-------~~V~W~k~~~----~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +....|.++.|+=+..+...       --|.|-+..+    ..+...+    ....--.+||+...    .+.+|.|-.-
T Consensus        35 i~~~LGs~vlLpLt~egI~KSmnkSi~IlVt~a~Sp~~~vkkKIvSldl~eg~sp~yledgY~Fhl----EnLsL~Il~S  110 (126)
T PF06214_consen   35 ILQQLGSSVLLPLTSEGINKSMNKSIHILVTMAKSPGSSVKKKIVSLDLSEGGSPRYLEDGYKFHL----ENLSLEILES  110 (126)
T ss_dssp             EEEETTS-EEEESSSTSTSTT----SEEEEEEESSSTT---EEEEEE-TTS-SS-EESSSSEEEET----TTTEEEETT-
T ss_pred             HHHHhCcceeeecchhhhhhhhccceEEEEEeccCCccchhheEEEeccccCCCccccccccEEec----ccceeehhcc
Confidence            34456778888877664431       1345654322    1233322    11111246888763    6889999999


Q ss_pred             CCCCCEEEEEee
Q psy14080         81 QKRDNGTYECQA   92 (113)
Q Consensus        81 ~~~D~G~Y~C~~   92 (113)
                      +.+|+|.|+-.+
T Consensus       111 rkE~EGWYfmtl  122 (126)
T PF06214_consen  111 RKEDEGWYFMTL  122 (126)
T ss_dssp             -GGG-EEEEEEE
T ss_pred             ccccCceEEEEe
Confidence            999999998765

Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=87.94  E-value=0.97  Score=35.29  Aligned_cols=88  Identities=9%  Similarity=0.017  Sum_probs=49.3

Q ss_pred             ceEEEecCCcE-EEEEEEccCC-CCEEEEEecCCC-e---E-EEecceEEcCCC-CEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         14 QISTGFLAVFS-YSDKTVRDIV-KVRVSWVRRRDW-H---I-LTSGVLTYTNDA-RFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        14 ~~~tv~~G~~a-~L~C~v~~~~-~~~V~W~k~~~~-~---~-l~~~~~~~~~~~-R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      -++.+.-|++. .|.|.++... -..|--+|.... .   + +...+.  ..+. =|-.   .....+++.+.|+..+|+
T Consensus        19 ynIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Na--g~dn~CyCG---d~dkeYsf~~~Nvs~sdE   93 (500)
T PHA02914         19 YNIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNA--GEDNVCYCG---DPDKEYSFIEENIGEHED   93 (500)
T ss_pred             ceEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCC--CCCCccccC---CCcceeEEEecCcccccC
Confidence            35566677888 9999998543 234555553321 1   1 111110  0010 1110   012578999999999999


Q ss_pred             EEEEEeecCCCCe--eEEEEece
Q psy14080         86 GTYECQAQPYTTT--SHSQNAPG  106 (113)
Q Consensus        86 G~Y~C~~~~~~~~--s~~~~L~V  106 (113)
                      |.|.|........  .+.+.|.|
T Consensus        94 GrYrCIFYLn~~EtyrH~I~vrV  116 (500)
T PHA02914         94 GDFKCIFYLGDNESHKHEILVRK  116 (500)
T ss_pred             CcEEEEEEeCCceeEEEEEEEEE
Confidence            9999999654433  33444443

>PHA03282 envelope glycoprotein E; Provisional

Probab=87.13  E-value=1.1  Score=35.65  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080         70 SDDWNLQIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        70 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      +++..|++.|++.+|+|.|-|.+..++
T Consensus       330 ~n~VdL~F~nAp~saSGLYVfVl~yNG  356 (540)
T PHA03282        330 GHTVNLQLRDASEASGGLYVCVVYVNG  356 (540)
T ss_pred             CCccceEecCCCcccCceEEEEEEECC
Confidence            455699999999999999999996554

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=86.23  E-value=4.3  Score=30.94  Aligned_cols=21  Identities=14%  Similarity=0.048  Sum_probs=16.4

Q ss_pred             cEEEEEEEccCC--CCEEEEEec
Q psy14080         23 FSYSDKTVRDIV--KVRVSWVRR   43 (113)
Q Consensus        23 ~a~L~C~v~~~~--~~~V~W~k~   43 (113)
                      .++|.|.+.+.-  .-.|.|.|.
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            579999998763  346799885

>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=84.20  E-value=2.6  Score=24.26  Aligned_cols=15  Identities=33%  Similarity=0.339  Sum_probs=11.2

Q ss_pred             cEEEEEccCCCCCCE
Q psy14080         72 DWNLQIKFLQKRDNG   86 (113)
Q Consensus        72 ~~~L~I~~v~~~D~G   86 (113)
                      .-.|+|-+|....+|
T Consensus        49 ~qNLTLinVt~~~~G   63 (63)
T PF02440_consen   49 GQNLTLINVTKTYNG   63 (63)
T ss_pred             CCeEEEEEecccccC
Confidence            347888888887765

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PHA03273 envelope glycoprotein C; Provisional

Probab=82.19  E-value=12  Score=29.86  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=24.0

Q ss_pred             cEEEEEccCCCCCCEEEEEeecC-CCCeeEEEEece
Q psy14080         72 DWNLQIKFLQKRDNGTYECQAQP-YTTTSHSQNAPG  106 (113)
Q Consensus        72 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~s~~~~L~V  106 (113)
                      .+.|.|+.+..+++|+|+=.+.. +.......++.|
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV  232 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTV  232 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEE
Confidence            47899999999999999866532 233333344444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-16
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-15
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	3e-14
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	9e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	7e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-04

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 66.4 bits (162), Expect = 9e-16
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 29  TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
            V       + W        L         D R +++      + ++ +  +   D G Y
Sbjct: 29  RVDQNDNTSLQWSNP-AQQTLYFDDKKALRDNRIELVR-ASWHELSISVSDVSLSDEGQY 86

Query: 89  ECQAQPYTTTSHSQNA 104
            C    +T    +  A
Sbjct: 87  TCSL--FTMPVKTSKA 100

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 66.7 bits (162), Expect = 2e-15
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
            + W        L  G      D R Q++      + ++ I  +   D G Y C      
Sbjct: 69  SLQWSNP-AQQTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADEGEYTCSIFTMP 126

Query: 97  TTSHSQ 102
             +   
Sbjct: 127 VRTAKS 132

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 62.6 bits (152), Expect = 3e-14
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 24  SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-------GSDDWNLQ 76
            +++   + + ++ V W  + +  +       Y    +F  +H+         SD W L+
Sbjct: 17  QFANSQNQSLSELVVFWQDQENLVLNE----VYLGKEKFDSVHSKYMGRTSFDSDSWTLR 72

Query: 77  IKFLQKRDNGTYECQAQPYTTTSH 100
           +  LQ +D G Y+C       T  
Sbjct: 73  LHNLQIKDKGLYQCIIHHKKPTGM 96

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 59.6 bits (144), Expect = 6e-13
 Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 29  TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY 88
                    + W+    + I  +       ++++Q++H   ++  ++ +  +  +D G Y
Sbjct: 24  VTSLRKNSSLQWLTPSGFTIFLNEY-PVLKNSKYQLLHHS-ANQLSITVPNVTLQDEGVY 81

Query: 89  ECQAQPYTTTSHSQNA 104
           +C    Y+ +  ++  
Sbjct: 82  KCLH--YSDSVSTKEV 95

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 35  KVRVSWVRRRDWHILTSGVLTYTNDA---------RFQVIHTDGSDDWNLQIKFLQKRDN 85
             RV W+  +D    +  VL Y ++          R  ++     +D +L ++ +QK D 
Sbjct: 37  VDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADE 96

Query: 86  GTYECQAQ 93
           G Y C+ +
Sbjct: 97  GIYTCEIR 104

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDA-------------RFQVIHTDGSDDWNLQIKFLQKR 83
           +V+W+     H     VL+Y ++              R  +      +D +++++ +++ 
Sbjct: 152 KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKES 211

Query: 84  DNGTYECQAQ 93
           D G Y C   
Sbjct: 212 DQGIYTCSIY 221

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 8/68 (11%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT 96
            +SW          +G     N  R  V+  D  D   L I      D G Y+C      
Sbjct: 34  DISWFSP-------NGEKLSPNQQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVTAED 85

Query: 97  TTSHSQNA 104
            T      
Sbjct: 86  GTQSEATV 93

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 23  FSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA--------RFQVIHTDGSDDWN 74
           FSY  ++      + V W R  +       V T   D         RF+++      + +
Sbjct: 24  FSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83

Query: 75  LQIKFLQKRDNGTYECQAQPYTTTSHS 101
           L I   +  D G+Y  + +      +S
Sbjct: 84  LSIGDARMEDTGSYFFRVERGRDVKYS 110

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 6/74 (8%)

Query: 35  KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG------SDDWNLQIKFLQKRDNGTY 88
            ++  W       IL +     T          D         ++ L IK L+  D+ TY
Sbjct: 24  SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83

Query: 89  ECQAQPYTTTSHSQ 102
            C+ +         
Sbjct: 84  ICEVEDQKEEVQLL 97

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 21 AVFSYSDKTVRDIVKVRVSWVRR----RDWHILTSGVLTYTNDARFQVIH--TDGSDDWN 74
             +   + V    ++ VSW +         I          +  F+        ++ + 
Sbjct: 9  VTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFF 68

Query: 75 LQIKFLQKRDNGTYECQAQ 93
          L +       +G Y C+ +
Sbjct: 69 LVVTAANISHDGNYLCRMK 87

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 38 VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA 92
          ++W R  D    T G    + D R +V    GS   +L IK ++  D+G Y+C+A
Sbjct: 32 ITWKRAVDGFTFTEG--DKSLDGRIEVKGQHGSS--SLHIKDVKLSDSGRYDCEA 82

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 36  VRVSWVRRRDWHILTSGVLTYTNDA--------RFQVIHTDGSDDWNLQIKFLQKRDNGT 87
            +V+W +  +       +   +           R + +      D  +++  L+  D G 
Sbjct: 48  TQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR-PSFTDGTIRLSRLELEDEGV 106

Query: 88  YECQAQPYTTTSHSQNA 104
           Y C+   + T +     
Sbjct: 107 YICEFATFPTGNRESQL 123

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 24 SYSDKTVRDIVKVRVSWVRRRD------WHILTSGVLTYTNDARFQVIHTDGSD-DWNLQ 76
                +      +++W R  +      +H       + +    F          + +L+
Sbjct: 23 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82

Query: 77 IKFLQKRDNGTYECQ 91
          +  L+  D G Y C 
Sbjct: 83 MFGLRVEDEGNYTCL 97

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 8/57 (14%)

Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
           +SW          +G     N  R  V+  D  D   L I      D G Y+C   
Sbjct: 34 DISWFSP-------NGEKLSPNQQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVT 82

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 35  KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
              + W  +          +    D RF  + ++      LQI+ ++K D GTY C+ +
Sbjct: 129 PPTIIWKHK-------GRDVILKKDVRFI-VLSNNY----LQIRGIKKTDEGTYRCEGR 175

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
           V W   RD  IL     T T     +    D      L+I  LQ  D G Y+C   
Sbjct: 34 EVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 35 KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG------SDDWNLQIKFLQKRDNGTY 88
           ++  W       IL +     T          D         ++ L IK L+  D+ TY
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82

Query: 89 ECQAQ 93
           C+ +
Sbjct: 83 ICEVE 87

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 37  RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
            + W++     +     +++   +R +++     D  NL I  ++  D G Y+C AQ
Sbjct: 140 TLIWIKDGV-PLDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCIAQ 190

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 13/57 (22%)

Query: 37 RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ 93
           + W +         GVL  T D+R +    +G     LQI++ +  D G Y C A 
Sbjct: 39 TILWRKD--------GVLVSTQDSRIKQ-LENGV----LQIRYAKLGDTGRYTCIAS 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	99.82
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	99.81
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.8
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.8
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.8
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.79
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	99.79
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.79
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.78
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	99.78
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.78
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.77
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	99.77
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.77
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.77
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	99.77
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.77
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	99.77
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.77
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.77
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.77
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.76
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.76
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.76
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.76
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.76
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	99.76
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	99.76
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.76
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	99.76
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	99.76
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.76
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.75
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.75
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.75
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.75
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	99.75
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	99.75
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.75
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	99.75
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	99.75
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.75
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	99.75
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.75
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	99.75
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	99.75
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	99.75
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	99.75
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	99.75
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.75
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	99.75
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	99.74
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	99.74
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	99.74
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	99.74
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.74
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.74
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.74
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.74
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	99.74
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	99.74
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.74
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.74
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	99.74
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.73
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.73
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	99.73
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	99.73
1p4b_L	135	Antibody variable light chain; FV antibody, antige	99.73
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.73
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.73
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.73
3eak_A	137	NBBCII10-FGLA; antibody, nanobody, humanization, V	99.73
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.73
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.73
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	99.73
3k3q_A	151	Llama AA1 VHH domain; llama, VHH, antibody, BONT,	99.73
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.73
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	99.73
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.73
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	99.73
3khq_A	133	B-cell antigen receptor complex-associated protei	99.72
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	99.72
3b9v_A	120	Heavy chain variable domain; antibody engineering,	99.72
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	99.72
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	99.72
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	99.72
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	99.72
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	99.72
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.72
3k1k_C	123	Enhancer; nanobody, antibody-complex, chromophore,	99.72
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.72
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.72
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.72
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	99.72
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	99.72
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	99.72
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	99.71
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	99.71
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.71
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	99.71
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.71
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	99.71
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	99.71
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	99.71
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.71
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.71
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	99.71
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	99.71
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.7
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	99.7
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.7
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	99.7
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.7
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	99.7
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	99.7
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.7
3u6r_H	149	Antibody 1:7 (heavy chain); IG-like domain, neutra	99.7
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.7
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	99.53
3g9a_B	139	Minimizer; antibody complex, chromophore, luminesc	99.7
3k81_A	127	Single strand antibody VHH domain; krepa6, single	99.7
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.7
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.7
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	99.69
1dqt_A	117	CTLA4, cytotoxic T lymphocyte associated antigen 4	99.69
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.69
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	99.69
2vyr_E	153	Human single domain antibody; zinc, complex, nucle	99.69
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.69
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	99.69
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	99.69
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.69
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.69
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	99.69
1xt5_A	135	Variable region-containing chitin-binding protein	99.69
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.69
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	99.68
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.68
3r0m_A	143	Llama VHH A12; IG domain, immune system; 1.50A {La	99.68
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.68
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.68
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.68
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.68
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.68
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.68
3v0a_C	152	Llama antibody F12; botulinum neurotoxin, toxin, n	99.68
3lh2_H	137	FV 4E10 heavy chain; epitope-scaffold, immune syst	99.68
3qyc_A	146	VH domain of IGG molecule; immunoglobulin V domain	99.68
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.68
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	99.68
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.68
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.68
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.67
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.67
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.67
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.67
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.67
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.67
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.67
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.67
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	99.66
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.66
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.66
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.66
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.66
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.66
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.66
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.66
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.66
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.66
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.65
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.65
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.65
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.65
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.65
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.65
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.65
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.65
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.64
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.64
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.64
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.64
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.64
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.64
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.63
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.63
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.63
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.63
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.43
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.63
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.63
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.63
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.63
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.63
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.63
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.63
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.63
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.63
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	99.62
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.62
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.62
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.62
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.62
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.62
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.62
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.62
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.62
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.62
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.61
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.61
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.61
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.61
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.61
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.61
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	99.61
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.61
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.61
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.61
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.6
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.6
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.6
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.6
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.6
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.6
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.6
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.6
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.6
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.6
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.59
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.59
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.59
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.59
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.59
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.59
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.59
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.59
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.59
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.58
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.58
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.58
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.58
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.58
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.58
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.58
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.58
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.58
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.57
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.57
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.57
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.57
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.57
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.57
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	99.56
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.56
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.56
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.56
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.56
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.56
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.56
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.56
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.56
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.55
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.55
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.55
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.55
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.55
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.55
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.55
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.55
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.55
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.55
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.54
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	99.54
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.54
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.54
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.54
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.54
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.54
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.54
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.54
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.54
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.54
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.53
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.53
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.53
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.53
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.53
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.52
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.52
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.52
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.52
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.52
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.52
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.52
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	99.52
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.51
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.51
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.51
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.51
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.51
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.51
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.5
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.5
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.5
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.5
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.5
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.5
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.49
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.49
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.49
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.49
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.48
1he7_A	126	High affinity nerve growth factor receptor; transf	99.48
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.48
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
1yjd_C	140	TP44, T-cell-specific surface glycoprotein CD28; I	99.48
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.47
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.47
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.47
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.47
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.47
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.47
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.47
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.46
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.46
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.46
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.46
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.46
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.46
2ens_A	96	Advanced glycosylation END product-specific recept	99.46
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.45
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.45
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.45
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.44
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.44
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.44
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.44
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.43
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.43
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.42
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.42
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.42
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.42
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.42
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.42
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.41
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.41
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.41
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.4
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.4
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.4
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.4
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.4
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.4
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.4
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.39
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.38
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.38
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.38
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.38
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.37
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.37
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.37
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.36
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.36
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.36
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.36
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.36
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.36
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.36
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.36
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.36
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.35
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.35
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.34
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.34
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.34
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.34
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.34
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.33
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.33
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.33
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.33
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.33
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.33
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.32
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.32
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.31
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.31
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.31
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.31
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.31
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.31
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.3
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.3
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.3
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.3
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.3
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.3
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.29
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.29
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.29
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.29
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.29
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.29
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.28
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.27
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.27
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.27
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.26
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.26
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.26
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.26
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.26
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.25
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.25
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.25
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.24
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.24
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.24
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.23
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.22
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.21
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.2
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.2
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.2
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.2
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.2
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.19
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.19
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.18
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.17
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.17
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.17
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.16
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.14
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.13
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.11
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.1
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.1
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.1
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.08
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.05

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=99.81  E-value=8.7e-19  Score=114.14  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC---e-EEEec-c-eEEcCCCCEEEEEeCCCCcEEEEE
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW---H-ILTSG-V-LTYTNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~---~-~l~~~-~-~~~~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      |-...++....+++.+|++|+|+|.++... ...|+||||..+   . ++... . .....++||.+..+..++.++|+|
T Consensus         8 ~~~~v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I   87 (134)
T 3bik_B            8 PWRSLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNI   87 (134)
T ss_dssp             --CCEEEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEE
Confidence            444556677789999999999999998653 578999999742   2 23222 1 123347899987666778899999


Q ss_pred             ccCCCCCCEEEEEeecCCCC-----eeEEEEeceeccc
Q psy14080         78 KFLQKRDNGTYECQAQPYTT-----TSHSQNAPGLGDL  110 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~~~-----~s~~~~L~V~g~~  110 (113)
                      ++++++|+|+|+|++.....     ....+.|.|.+..
T Consensus        88 ~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           88 LDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             CSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             CCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            99999999999999964321     2346788887654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.80  E-value=2.2e-18  Score=106.10  Aligned_cols=96  Identities=14%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ....++++.+|++++|.|.+.+.+.+.|.|+|.. ..++..+......++||.+... ..+.++|.|.+++.+|+|.|+|
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   88 (108)
T 3m45_A           11 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTC   88 (108)
T ss_dssp             EECCCEEEETTSCEEEEEEESSCSSCCEEEECTT-CCEEEETTEECSCCTTEEEEEE-SSSEEEEEECSCCGGGCEEEEE
T ss_pred             ccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCC-CceEEEcCCcccccCcEEEeec-CCCcEEEEECCCChhHCeEEEE
Confidence            3456789999999999999999888899999854 3355554444456779998653 3468899999999999999999


Q ss_pred             eecCCCCeeEEEEeceec
Q psy14080         91 QAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        91 ~~~~~~~~s~~~~L~V~g  108 (113)
                      .+...+..+..+.|.|.+
T Consensus        89 ~~~n~~~~~~~~~L~V~~  106 (108)
T 3m45_A           89 SLFTMPVKTSKAYLTVLG  106 (108)
T ss_dssp             EECSSSCEEEEEEEEEEC
T ss_pred             EEEcCCCcEEEEEEEEEc
Confidence            996677788899999876

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.80  E-value=8.5e-19  Score=111.90  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=72.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeE-EEecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHI-LTSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~-l~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.+++.+.+.|.|||+.+   +.. +....... ..++||.+..  +++.++|+|.+++++
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG--SGRDYSFSISNLEPE   83 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGG
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--cCCEEEEEECCCChH
Confidence            3455677899999999999999987778999999863   233 33222111 1257999863  456899999999999


Q ss_pred             CCEEEEEeecCCC--CeeEEEEeceecccccC
Q psy14080         84 DNGTYECQAQPYT--TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        84 D~G~Y~C~~~~~~--~~s~~~~L~V~g~~~~~  113 (113)
                      |+|+|+|++....  ..-....|.|++++.-|
T Consensus        84 DsG~Y~C~~~~~~~~~fg~GT~l~v~~~~~~~  115 (119)
T 2e27_L           84 DAATYYCLQYDNFTWTFGGGTKLEIKRAAGHH  115 (119)
T ss_dssp             GCEEEEEEECGGGCCEECCCEEEEEEC-----
T ss_pred             HCEEEEEEEccCCceEECCCEEEEEeCCCccc
Confidence            9999999995432  23456678888766543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.80  E-value=5.4e-19  Score=109.61  Aligned_cols=96  Identities=19%  Similarity=0.121  Sum_probs=75.9

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.|. ....++++.+|+++.|.|.+.+.+.+.|.|+|.  +..+..     ..+.||.+..  ..+..+|.|.+++.
T Consensus         3 ~~PP~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~--g~~i~~-----~~~~~~~~~~--~~~~~~L~I~~~~~   72 (100)
T 3knb_A            3 GIPPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG--GRKIHS-----QEQGRFHIEN--TDDLTTLIIMDVQK   72 (100)
T ss_dssp             CEEEEEC-CCCSEEEEETTSEEEEEEEEEEESCCEEEEEET--TEECCT-----TGGGTEEEEE--CSSEEEEEESSCCG
T ss_pred             CCCCEEE-eCCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC--ceEeee-----eccceeeeec--ccceEEEEEcCCCc
Confidence            4566664 456788999999999999999999999999983  333321     1245887763  34577999999999


Q ss_pred             CCCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+ +..+..+..++|.|++
T Consensus        73 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           73 QDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            9999999999 5667888899999976

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.79  E-value=8e-19  Score=113.45  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCC---Ce-EEEecce--EEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRD---WH-ILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~---~~-~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .+++....+++.+|++|+|.|.++... ...|.|||+..   .. ++.....  .....+||.+..+.+.+.++|+|+++
T Consensus         3 ~~~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   82 (129)
T 3rrq_A            3 PPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRA   82 (129)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSC
T ss_pred             CcEECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCC
Confidence            346777789999999999999998754 56899999863   22 3333221  11235799998766778899999999


Q ss_pred             CCCCCEEEEEeecC-CCCe----eEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQP-YTTT----SHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~-~~~~----s~~~~L~V~g~  109 (113)
                      +.+|+|+|+|++.. .+..    +..+.|.|.+.
T Consensus        83 ~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~  116 (129)
T 3rrq_A           83 RRNDSGTYLCGAISLAPKLQIKESLRAELRVTER  116 (129)
T ss_dssp             CGGGCEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred             ChhHCEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence            99999999999954 3333    45688888764

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=99.79  E-value=8.8e-19  Score=112.52  Aligned_cols=85  Identities=14%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC----eEEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW----HILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~----~~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +....+++.+|++|+|+|.++...  ...+.|||+.++    .++... .......+||.+..+..++.++|+|++++++
T Consensus        15 ~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~   94 (122)
T 1hkf_A           15 SKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREE   94 (122)
T ss_dssp             CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHH
Confidence            345568899999999999998542  368999999742    233322 2222346899987667788999999999999


Q ss_pred             CCEEEEEeecCC
Q psy14080         84 DNGTYECQAQPY   95 (113)
Q Consensus        84 D~G~Y~C~~~~~   95 (113)
                      |+|+|+|++...
T Consensus        95 Dsg~Y~C~v~~~  106 (122)
T 1hkf_A           95 DSGHYWCRIYRP  106 (122)
T ss_dssp             GCEEEEEEEECT
T ss_pred             HCEEEEEEEEcC
Confidence            999999999754

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.79  E-value=2.2e-18  Score=108.15  Aligned_cols=97  Identities=9%  Similarity=-0.014  Sum_probs=72.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC---eEEE-ec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW---HILT-SG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~---~~l~-~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+..+++.+|++|+|+|.+.... ...|.|||+..+   ..+. .. ......++||.+..+...+.++|+|++++.+|+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC
Confidence            34568899999999999998653 346999998742   3332 21 111123579998766677889999999999999


Q ss_pred             EEEEEeecCCC-CeeEEEEeceec
Q psy14080         86 GTYECQAQPYT-TTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~~~~~-~~s~~~~L~V~g  108 (113)
                      |+|+|++...+ ..+..++|.|..
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~  110 (113)
T 1zox_A           87 GIYWCGITKGGLDPMFKVTVNIGP  110 (113)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEC
T ss_pred             EEEEEeeEcCCCCccEEEEEEEEc
Confidence            99999996543 457788888863

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.78  E-value=3.5e-18  Score=109.10  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeE-EEecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHI-LTSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~-l~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.+.+.|.|||+..   ... +....... ...+||.+..  ..+.++|+|++++.+|
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D   82 (120)
T 1mqk_L            5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPED   82 (120)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             EecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec--cCCEEEEEECCCCHHH
Confidence            455677899999999999999987778899999863   233 33222111 1257999863  4568899999999999


Q ss_pred             CEEEEEeecCCC---CeeEEEEeceeccc
Q psy14080         85 NGTYECQAQPYT---TTSHSQNAPGLGDL  110 (113)
Q Consensus        85 ~G~Y~C~~~~~~---~~s~~~~L~V~g~~  110 (113)
                      +|+|+|++....   .......|.|++..
T Consensus        83 sG~Y~C~~~~~~~~~~fg~gt~L~V~~~~  111 (120)
T 1mqk_L           83 FGSYYCQHHYGTPPLTFGGGTKLEIKREQ  111 (120)
T ss_dssp             CEEEEEEECSSSSSCCBCCCEEEEEC---
T ss_pred             CEEEEEEEEeCCCceEECCCeEEEEecCC
Confidence            999999996432   34456788887754

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=99.78  E-value=5.3e-18  Score=108.48  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..+ ....    ...  ...+||.+..+..++.++|+|+++
T Consensus         9 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (121)
T 2xt1_B            9 SGGGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDL   88 (121)
T ss_dssp             ECCEEEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCC
Confidence            446899999999999999853  357899999873   2333 2211    111  125799998766678899999999


Q ss_pred             CCCCCEEEEEeecCCCCeeEEEEeceeccc
Q psy14080         81 QKRDNGTYECQAQPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~~  110 (113)
                      +++|+|+|+|++.. ...-....|.|....
T Consensus        89 ~~~DsG~Y~C~~~~-~~fg~Gt~l~v~~~~  117 (121)
T 2xt1_B           89 KPEDTAMYYCKASG-SSWGQGTQVTVSSHH  117 (121)
T ss_dssp             CGGGCEEEEEEETT-CCCCCCEEEEEEC--
T ss_pred             CHHHCEEEEEEEEe-CEECCCEEEEEeccc
Confidence            99999999999972 222334466666543

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.78  E-value=4.8e-18  Score=105.91  Aligned_cols=96  Identities=17%  Similarity=0.136  Sum_probs=69.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+. ...... ..++||.+..  +.+.++|+|.+++++|
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D   82 (108)
T 1jhl_L            5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTTC
T ss_pred             eccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCHHH
Confidence            445667899999999999999988788999999863   23332 222111 1257998863  4578899999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEecee
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V~  107 (113)
                      +|+|+|.+....  .......|.|+
T Consensus        83 sG~Y~C~~~n~~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           83 FAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CEEEEEEEccCCccEECCCEEEEEE
Confidence            999999996543  22345566665

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.77  E-value=3.9e-18  Score=108.78  Aligned_cols=98  Identities=10%  Similarity=0.147  Sum_probs=76.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      +....++++.+|++++|.|.+.+.+.+.|.|++.. ..++.........++||.+.. ...+.++|.|.+++.+|+|.|+
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~   82 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPS-GFTIFLNEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDEGVYK   82 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTT-SCEEEETTEECSCSSCCEEEE-EETTEEEEEESSCCGGGCEEEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCC-CeEEEEeccccccCCcEEEEe-CCCCEEEEEECCCChHHCEEEE
Confidence            44556789999999999999998888999999754 344443333334578998864 2446789999999999999999


Q ss_pred             EeecCCCCeeEEEEeceecc
Q psy14080         90 CQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |.+...+..+..+.|.|.+.
T Consensus        83 C~a~n~g~~~~~~~l~V~~~  102 (124)
T 3rbg_A           83 CLHYSDSVSTKEVKVIVLAT  102 (124)
T ss_dssp             EEEESSSEEEEEEEEEEECC
T ss_pred             EEEEcCCCCcEEEEEEEEeC
Confidence            99965477788899998764

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=99.77  E-value=1.3e-17  Score=106.79  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=70.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEec-ce--EE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSG-VL--TY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~-~~--~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|+|.+. .....|.|||+.+   +.++... ..  ..  ...+||.+.. ...+.++|+|++++
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~   82 (121)
T 2oi9_C            5 TQSPRNKVAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASR-PSQENFSLTLESAT   82 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEEC-CSSSEEEEEESSCC
T ss_pred             EeCCCeEEecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEc-CCCCEEEEEECCCC
Confidence            4556778999999999999975 3567899999973   2333321 11  11  1257999875 45567999999999


Q ss_pred             CCCCEEEEEeecCCCC--eeEEEEeceecccccC
Q psy14080         82 KRDNGTYECQAQPYTT--TSHSQNAPGLGDLLMH  113 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~--~s~~~~L~V~g~~~~~  113 (113)
                      ++|+|+|+|++.....  ......|.|++++..|
T Consensus        83 ~~DsG~Y~C~~~~~~~~~fg~GT~l~v~~~~~~~  116 (121)
T 2oi9_C           83 PSQTSVYFCASGGGGTLYFGAGTRLSVLSSALEH  116 (121)
T ss_dssp             GGGCEEEEEEEESSSCEEECCCEEEEEEC-----
T ss_pred             HHHCEEEEEEEccCCccEECCCeEEEEechhhhh
Confidence            9999999999965432  2345678888776654

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.77  E-value=5.8e-18  Score=106.50  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=69.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-----CCEEEEEecCC---CeEE-EecceEE-cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRD---WHIL-TSGVLTY-TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~---~~~l-~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++.+..+++.+|++|+|+|.+++..     .+.|.|||+.+   +..+ ....... ...+||.+..  .++.++|+|++
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~   82 (113)
T 1dlf_L            5 TQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISR   82 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECS
T ss_pred             EEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEc--cCCEEEEEECC
Confidence            4556678999999999999998764     47899999873   2333 3222111 1257999864  45789999999


Q ss_pred             CCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      ++++|+|+|+|++.....  ......|.|+|
T Consensus        83 v~~~DsG~Y~C~~~~~~~~~fg~gT~l~V~~  113 (113)
T 1dlf_L           83 VEAEDLGVYFCSQSTHVPFTFGSGTKLEIKR  113 (113)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CChHHCEEEEEEEecCCCcEECCCEEEEEcC
Confidence            999999999999965322  23455666654

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.77  E-value=3.2e-18  Score=106.77  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-EecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.+.+.|.|||+.+   ...+ ....... ..++||.+..  +++.++|+|++++++|
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D   82 (107)
T 1i8k_A            5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSED   82 (107)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             EeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc--cCCEEEEEECCCCHHH
Confidence            455677899999999999999987778899999863   2333 3222111 1257999863  4578899999999999


Q ss_pred             CEEEEEeecCC
Q psy14080         85 NGTYECQAQPY   95 (113)
Q Consensus        85 ~G~Y~C~~~~~   95 (113)
                      +|+|+|++...
T Consensus        83 sG~Y~C~~~~~   93 (107)
T 1i8k_A           83 VGDYYCLQSFN   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999653

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=99.77  E-value=7.3e-18  Score=108.42  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC---eEE-Eec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW---HIL-TSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~---~~l-~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ....+++.+|++|+|+|.++... ...+.|||+..+   ..+ ..+ .......+||.+..+..++.++|+|++++++|+
T Consensus         8 ~p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Ds   87 (124)
T 2nms_A            8 GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDA   87 (124)
T ss_dssp             CCSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             cccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHC
Confidence            34568899999999999998653 357999999742   233 222 111123579998766677899999999999999


Q ss_pred             EEEEEeecCCC-CeeEEEEeceecc
Q psy14080         86 GTYECQAQPYT-TTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~~~~-~~s~~~~L~V~g~  109 (113)
                      |+|+|++.... .....+.|.|...
T Consensus        88 g~Y~C~~~~~~~~~~~~v~L~V~~~  112 (124)
T 2nms_A           88 DTYWCGIEKTGNDLGVTVQVTIDPA  112 (124)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEEEcCCCCccEEEEEEEeCC
Confidence            99999996543 3456688888653

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.77  E-value=3e-18  Score=106.83  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCC---CEEEEEecCCCeEEEecceEEcCCCCEEEEEe--C--CCCcEEEEE
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDWHILTSGVLTYTNDARFQVIHT--D--GSDDWNLQI   77 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~--~--~~~~~~L~I   77 (113)
                      |...+...++++++.+|++|+|.|.+.+.+.   +.|.|||.. ...+  ..   ....||.+...  .  ....++|+|
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~-~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~L~I   76 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGK-WVDL--SS---KVGQHLQLHDSYDRASKVYLFELHI   76 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETT-TEEG--GG---GCBTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCC-cccc--cc---cCCceEEEeeEEecccccceEEEEE
Confidence            5566667778899999999999999998877   899999943 1111  10   12356665321  1  123679999


Q ss_pred             ccCCCCCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         78 KFLQKRDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      .+++.+|+|.|+|.+. ..+..+..++|.|.+
T Consensus        77 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (108)
T 3cx2_A           77 TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE  108 (108)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ecCCCccCEEEEEEEecCCCceEEEEEEEEeC
Confidence            9999999999999994 567888999999863

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.77  E-value=3.6e-18  Score=108.86  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             cceEEEecCCcEEEEEEEccCC---CCEEEEEecCC---CeEE-Eecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRD---WHIL-TSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~---~~~l-~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      +..+++.+|++|+|+|.++...   ...+.|||+.+   ...| ..... .....+||.+..+..++.++|+|++++++|
T Consensus         7 p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~D   86 (117)
T 1xed_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   86 (117)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHH
Confidence            4568899999999999997541   35799999974   2333 22211 112467999876677889999999999999


Q ss_pred             CEEEEEeecCCC-CeeEEEEeceecccccC
Q psy14080         85 NGTYECQAQPYT-TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        85 ~G~Y~C~~~~~~-~~s~~~~L~V~g~~~~~  113 (113)
                      +|+|+|++...+ ...-...|.|++...-|
T Consensus        87 sG~Y~C~v~~~~~~l~f~~~~~~~~~~~~~  116 (117)
T 1xed_A           87 SGRYKCGLGINSRGLSFDVSLEVLEHHHHH  116 (117)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEECCCCCC
T ss_pred             CEEEEEEEEeCCCCeeEEEEEEEeeecccC
Confidence            999999996543 34566788888765443

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.77  E-value=3.6e-18  Score=107.65  Aligned_cols=97  Identities=18%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC------CCEEEEEecCC---CeEE-EecceEE-cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV------KVRVSWVRRRD---WHIL-TSGVLTY-TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~------~~~V~W~k~~~---~~~l-~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ++.+..+++.+|++|+|+|.+++.+      .+.|.|||+..   ...+ ....... ..++||.+..  +++.++|+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   82 (114)
T 1eeq_A            5 TQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSG--SGTDFTLTIS   82 (114)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             EecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEee--cCCEEEEEEC
Confidence            4456778999999999999998765      36899999873   2333 3222111 1257999863  4578999999


Q ss_pred             cCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +++++|+|+|+|++.....  ......|.|+|
T Consensus        83 ~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~V~~  114 (114)
T 1eeq_A           83 SLQAEDVAVYYCQQYYSHPYSFGQGTKLEIKR  114 (114)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCCcccCEEEEEEEeeCCeEEECCCEEEEEeC
Confidence            9999999999999965322  23455666654

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.77  E-value=2.8e-18  Score=107.77  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=68.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-EecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.+.+.|.|||+.+   ...+ ....... ...+||.+..  ..+.++|+|++++++|
T Consensus         8 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D   85 (111)
T 1i3g_L            8 TQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG--SGTDFTLTISNVQSED   85 (111)
T ss_dssp             EESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             EEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--CCCEEEEEECCCCHHH
Confidence            455667899999999999999877677899999974   2333 3222111 1257999863  4578999999999999


Q ss_pred             CEEEEEeecCCCC--eeEEEEeceec
Q psy14080         85 NGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +|+|+|++.....  ......|.|++
T Consensus        86 sG~Y~C~~~~~~~~~fg~GT~l~V~~  111 (111)
T 1i3g_L           86 LADYFCQQYSSYPLTFGAGTKLELKR  111 (111)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEC--
T ss_pred             CEEEEEEEecCCceEECCCeEEEEeC
Confidence            9999999964322  23445666653

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.77  E-value=6.8e-18  Score=105.58  Aligned_cols=95  Identities=15%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+.+.+.+.|.|||+..+   . ++....... ..++||.+..  +.+.++|+|++++++|
T Consensus         7 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D   84 (109)
T 2q20_A            7 TQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG--SGTDFTFTISSLQPED   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             EeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--cCCEEEEEECCCChhh
Confidence            4456678999999999999999877788999998732   2 232222111 1257999863  4568899999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEece
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V  106 (113)
                      +|+|+|.+....  .......|.|
T Consensus        85 sG~Y~C~~~~~~~~~fg~gT~L~V  108 (109)
T 2q20_A           85 IATYYCQQYDNLPYTFGQGTKLEI  108 (109)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             CEEEEEEEeeCCcceECCCEEEEE
Confidence            999999996432  2233445554

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.76  E-value=3.9e-18  Score=106.51  Aligned_cols=96  Identities=18%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.+.+.|.|||+..   ...+.......  ...+||.+.  .+.+.++|+|++++++|
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D   82 (108)
T 1qfw_M            5 TQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGS--GSATDFTLTISSVQAED   82 (108)
T ss_dssp             EEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECC--BCSSEEEEEESSCCTTC
T ss_pred             EEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEE--cCCCEEEEEECCCChhh
Confidence            455667899999999999999887777899999863   23332211111  125799875  34578999999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEecee
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V~  107 (113)
                      +|+|+|++....  .......|.|+
T Consensus        83 sG~Y~C~~~~~~~~~fg~gT~l~V~  107 (108)
T 1qfw_M           83 FADYHCGQTYNHPYTFGGGTKLEIK  107 (108)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEECC
T ss_pred             CEEEEEEEccCCceEECCCEEEEEc
Confidence            999999996532  22344566664

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.76  E-value=4.5e-18  Score=106.74  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.++ ...+++++.+|+++.|.|.+.+.+.+.|.|+|.  +..|       ..+.|+.+..  +.+..+|.|.+++.+
T Consensus        12 ~pP~f~-~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~--g~~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~   79 (107)
T 3knb_B           12 SPPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKG--GQQL-------AASERLSFPA--DGAEHGLLLTAALPT   79 (107)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEET--TEEC-------CCCSSEECCE--ETTEEEEEESSCCGG
T ss_pred             CCCEEE-eCCCcEEEeCCCcEEEEEEEEEecCCEEEEEEC--cccc-------cceeeEEEee--cCceEEEEEecCChh
Confidence            355444 456788999999999999999999999999983  3333       2467887753  345779999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |+|.|.|.+ +..+..+..+.|.|+.
T Consensus        80 D~G~Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           80 DAGVYVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hCEEEEEEEEECCCEEEEEEEEEEEc
Confidence            999999999 5667788889999875

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.76  E-value=3.5e-18  Score=106.89  Aligned_cols=96  Identities=17%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             cceEEEecCCcEEEEEE-EccCC-CCEEEEEecCC-CeEEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKT-VRDIV-KVRVSWVRRRD-WHILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~-v~~~~-~~~V~W~k~~~-~~~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +..+++.+|++|+|+|. +++.+ .+.|.|||+.. ...+.. ..... ..++||.+..+...+.++|+|++++++|+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   86 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEE
Confidence            67789999999999999 76554 47899999873 223322 21111 1257999886667788999999999999999


Q ss_pred             EEEeecCCCC--eeEEEEeceec
Q psy14080         88 YECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      |+|++.....  ......|.|+|
T Consensus        87 Y~C~~~~~~~~~fg~GT~l~V~~  109 (109)
T 1pew_A           87 YYCQSYDARNVVFGGGTRLTVLG  109 (109)
T ss_dssp             EEEEEEETTEEEECCCEEEEECC
T ss_pred             EEEEEEeCCceEECCCEEEEEeC
Confidence            9999964321  22344555553

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.76  E-value=1.6e-18  Score=108.36  Aligned_cols=94  Identities=12%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             cceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC---e-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW---H-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~---~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +..+++.+|++|+|+|.+.... .+.|.|||+...   . ++.........++||.+..+..++.++|+|++++++|+|+
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~   82 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGT   82 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEE
Confidence            3467899999999999997643 468999998732   2 2222111001357999876556678999999999999999


Q ss_pred             EEEeecCC--C---CeeEEEEece
Q psy14080         88 YECQAQPY--T---TTSHSQNAPG  106 (113)
Q Consensus        88 Y~C~~~~~--~---~~s~~~~L~V  106 (113)
                      |+|.+...  +   .....++|.|
T Consensus        83 Y~C~~~~~~~g~~~~~~~~v~v~V  106 (110)
T 2q87_A           83 YWCGVDTPWLQDFHDPVVEVEVSV  106 (110)
T ss_dssp             EEEEEECTTSCCBCCCSEEEEEEE
T ss_pred             EEEEEecCccCccCCccEEEEEEE
Confidence            99999654  2   2344555555

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.76  E-value=6.9e-18  Score=111.82  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.++..+.+.|.|||+.+   ...|........  ..+||.+..  +.+.++|+|++++++
T Consensus        19 v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           19 LTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG--SGTDFTLTISSLEPE   96 (146)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec--CCCEEEEEECCCCHH
Confidence            3455677899999999999999877677899999973   233332211111  257999864  456899999999999


Q ss_pred             CCEEEEEeecCCCC--eeEEEEeceecccc
Q psy14080         84 DNGTYECQAQPYTT--TSHSQNAPGLGDLL  111 (113)
Q Consensus        84 D~G~Y~C~~~~~~~--~s~~~~L~V~g~~~  111 (113)
                      |+|+|+|++.....  ......|.|++...
T Consensus        97 DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~~  126 (146)
T 2yc1_B           97 DFAIYYCQQYRYSPRTFGQGTKVEIKRAAA  126 (146)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             HCEEEEEEEecCCCCeECCCEEEEEeCCcc
Confidence            99999999964322  23456777776543

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=99.76  E-value=3.7e-18  Score=107.96  Aligned_cols=85  Identities=12%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---eEE-Eec-ce-EEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---HIL-TSG-VL-TYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l-~~~-~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++.+..+++.+|++|+|+|.++.. ..+.|.|||+.++   ..+ ... .. ....++||.+..+...+.++|+|+++++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   83 (116)
T 1fo0_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (116)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CcCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            445667899999999999999876 5568999999742   233 222 11 1122579998755667889999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        84 ~DsG~Y~C~~~~   95 (116)
T 1fo0_A           84 EDSAVYFCAMRG   95 (116)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             hhCEEEEEEEEc
Confidence            999999999965

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=99.76  E-value=5.8e-18  Score=106.70  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC------eEE-Eecc---eEEc---CCCCEEEEEeCCCCcEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW------HIL-TSGV---LTYT---NDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~------~~l-~~~~---~~~~---~~~R~~~~~~~~~~~~~L   75 (113)
                      ++.+..+++.+|++|+|+|.+++. ....|.|||+..+      ..+ ....   ..+.   ..+||.+..+.+++.++|
T Consensus         2 ~Q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (115)
T 2atp_B            2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             ccCCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEE
Confidence            345667889999999999999865 4678999998732      222 2211   1111   258999986556778999


Q ss_pred             EEccCCCCCCEEEEEeecCC
Q psy14080         76 QIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +|++++++|+|+|+|++...
T Consensus        82 ~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           82 SIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             EECSCCGGGCEEEEEEEECS
T ss_pred             EECCCCHHHCEEEEEeEccC
Confidence            99999999999999999653

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.76  E-value=6.5e-18  Score=106.71  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.+  .+.|.|||+..+   ..+.      ..++||.+..+...+.++|+|++++++|
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~------~~~~r~~~~~~~~~~~~~L~I~~~~~~D   77 (113)
T 1sq2_N            4 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI------SKGGRYVETVNSGSKSFSLRINDLTVED   77 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeE------EeCCCEEEEEeCCCCEEEEEECCCChhh
Confidence            4556678999999999999998654  568999998632   2221      2357998876566778999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++..
T Consensus        78 sG~Y~C~~~~   87 (113)
T 1sq2_N           78 GGTYRCGLGV   87 (113)
T ss_dssp             CEEEEEEECB
T ss_pred             CEEEEEEEEe
Confidence            9999999964

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=99.76  E-value=4.6e-18  Score=106.82  Aligned_cols=84  Identities=14%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ecc-eEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SGV-LTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+++...+.|.|||+.+   ...+. ... .....++||.+..+..++.++|+|++++++|
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T 2z35_A            4 TQTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (112)
T ss_dssp             ECSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTT
T ss_pred             EeCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhh
Confidence            445667899999999999999877678999999874   23332 211 1112357999875566778999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|++.
T Consensus        84 sG~Y~C~~~   92 (112)
T 2z35_A           84 SAVYYCALS   92 (112)
T ss_dssp             CSEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            999999997

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=99.76  E-value=7.7e-18  Score=108.10  Aligned_cols=78  Identities=23%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++..  .+.|.|||+.++   ..+.      ..++||.+..+..++.++|+|++++++|
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~------~~~~R~~~~~~~~~~~~~L~I~~~~~~D   77 (121)
T 2i24_N            4 DQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESI------SDGGRYVETVNRGSKSFSLRINDLTVKD   77 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEE------CSBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeE------ecCCCeEEEecCCCCEEEEEECCCChhh
Confidence            4556778999999999999998653  468999999742   2221      2457998765566788999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|++.
T Consensus        78 sG~Y~C~~~   86 (121)
T 2i24_N           78 SGTYRCKPE   86 (121)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999995

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.76  E-value=1.2e-17  Score=107.29  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC----CCEEEEEecCC---CeEEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRD---WHILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~---~~~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++.+..+++.+|++|+|+|.++..+    .+.|.|||+..   ...+.. ..... ...+||.+..  ..+.++|+|++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~sL~I~~   81 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSG--SETDFTLTIDS   81 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESS
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--CCCEEEEEECC
Confidence            34556678999999999999998765    56899999863   333332 22111 2357998863  45789999999


Q ss_pred             CCCCCCEEEEEeecCCC--CeeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQPYT--TTSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~  109 (113)
                      ++++|+|+|+|++....  .......|.|++.
T Consensus        82 v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  113 (126)
T 4ffy_L           82 VETDDAATYYCQQNNEDPYTFGGGTKLEIKGG  113 (126)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEEC-
T ss_pred             CCHHHCEEEEEEEecCCCcEECCCEEEEEecC
Confidence            99999999999996532  3445678888764

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.75  E-value=1.4e-17  Score=104.59  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-EecceEEcCCCCEEEEEeC-CCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TSGVLTYTNDARFQVIHTD-GSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+.+.. +.|.|||+.++   ..+ ..... ...++||.+..+. ..+.++|+|++++++|
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   82 (113)
T 1h5b_A            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             EECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEEECCCChhh
Confidence            4556778999999999999998754 68999998732   222 22211 2236799886543 5678999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|.+..
T Consensus        83 sG~Y~C~~~n   92 (113)
T 1h5b_A           83 SGTYFCAAEA   92 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999999964

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.75  E-value=7.4e-18  Score=109.11  Aligned_cols=79  Identities=23%  Similarity=0.250  Sum_probs=63.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++++|+|.+++.  +.+.++|||+.++   ..+.      ..++||.+..+...+.++|+|++++++|
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li------~~~~R~~~~~~~~~~~~sL~I~~v~~~D   77 (126)
T 3moq_A            4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSI------SIGGRYVETVNKGSKSFSLRISDLRVED   77 (126)
T ss_dssp             EEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEE------EeCCcEEEEEeCCCCEEEEEECcCChHh
Confidence            556677899999999999999865  4678999998642   2221      2467999876666789999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++.+
T Consensus        78 sG~Y~C~~~~   87 (126)
T 3moq_A           78 SGTYKCQAFY   87 (126)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            9999999953

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.75  E-value=3e-18  Score=109.54  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=66.8

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC---CEEEEEecCC---CeEEE-ec-ceEEc----CCCCEEEEE-eCCCCcEEEEEc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRD---WHILT-SG-VLTYT----NDARFQVIH-TDGSDDWNLQIK   78 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~---~~~l~-~~-~~~~~----~~~R~~~~~-~~~~~~~~L~I~   78 (113)
                      .+..+++.+|++|+|+|.++..+.   ..|.|||+..   ...+. .. .....    -.+|+.+.. ....++++|+|+
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            345688999999999999986543   3689999863   22222 11 11011    135777642 224567899999


Q ss_pred             cCCCCCCEEEEEeecCC--CCeeEEEEeceecccccC
Q psy14080         79 FLQKRDNGTYECQAQPY--TTTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V~g~~~~~  113 (113)
                      |++.+|+|.|+|++.+.  +..+..++|.|++...-|
T Consensus        86 ~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~~~~~  122 (123)
T 4gjt_B           86 NAVQADEGEYECRVSTFPAGSFQARLRLRVLEHHHHH  122 (123)
T ss_dssp             SCCSSSCSEEEEEEEESSSCEEEEEEEEEC-------
T ss_pred             CCChHHCEEEEEEEEECCCCeEEeEEEEEEEECccCC
Confidence            99999999999999653  456788999999876543

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=110.09  Aligned_cols=99  Identities=17%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-EecceEE-cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.++......|.|||+.+   ...+ +...... ...+||.+..  ..+.++|+|++++++
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~l~~~   80 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSG--SGTDFTLTISNLEPE   80 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGG
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEc--cCCEEEEEEccCccc
Confidence            4666778899999999999999877677899999863   2333 3222211 2367999863  457899999999999


Q ss_pred             CCEEEEEeecCCC-CeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYT-TTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~-~~s~~~~L~V~g~  109 (113)
                      |+|+|+|++.... .......|.|++.
T Consensus        81 DsG~Y~C~~~~~~~~fg~gt~L~V~~~  107 (143)
T 3u6r_L           81 DFAVYYCQQRSDWVTFGGGTKVEIKAA  107 (143)
T ss_dssp             GCEEEEEEECSSBCEECCCEEEEEC--
T ss_pred             CCEEEEEEEecCCCEECCCEEEEECCC
Confidence            9999999996542 3344567777664

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=99.75  E-value=2.6e-17  Score=105.80  Aligned_cols=101  Identities=7%  Similarity=0.019  Sum_probs=72.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEec---ceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSG---VLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~---~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|+|.++......|.|||+.+   ..++...   ....  ...+||.+..+ +.+.++|+|++++
T Consensus         9 ~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~sL~I~~~~   87 (125)
T 3r8b_B            9 TQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRP-SQENFSLILELAT   87 (125)
T ss_dssp             EEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEE-ETTEEEEEETTCC
T ss_pred             EecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEec-CCCEEEEEECCCC
Confidence            455667899999999999999876556899999873   2333221   1111  12579998753 3578999999999


Q ss_pred             CCCCEEEEEeecCCC--CeeEEEEeceecccc
Q psy14080         82 KRDNGTYECQAQPYT--TTSHSQNAPGLGDLL  111 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~~  111 (113)
                      ++|+|+|+|++....  .......|.|++++-
T Consensus        88 ~~Dsg~Y~C~~~~~~~~~fg~GT~l~V~~~l~  119 (125)
T 3r8b_B           88 PSQTSVYFCASGGGGTLYFGAGTRLSVLYGSS  119 (125)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEBCC-
T ss_pred             hhhCEEEEEEEcCCCCcEECCCEEEEEeeccc
Confidence            999999999996433  233556788888763

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=99.75  E-value=9.7e-18  Score=111.24  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=74.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---C---eEE-Eecc---eEEc---CCCCEEEEEeCCCCcEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---W---HIL-TSGV---LTYT---NDARFQVIHTDGSDDWN   74 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~---~~l-~~~~---~~~~---~~~R~~~~~~~~~~~~~   74 (113)
                      .++....+++.+|++|+|+|.+++. ....|+|||+..   +   .+| ....   ..+.   ..+||.+..+.+.+.++
T Consensus         4 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~s   83 (150)
T 3dmm_D            4 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF   83 (150)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSSCE
T ss_pred             cEECCCeEEEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCEEE
Confidence            4566677899999999999999864 567899999963   1   233 2211   1111   26899987667778899


Q ss_pred             EEEccCCCCCCEEEEEeecCCCC--eeEEEEeceeccc
Q psy14080         75 LQIKFLQKRDNGTYECQAQPYTT--TSHSQNAPGLGDL  110 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g~~  110 (113)
                      |+|.+++++|+|+|+|++.....  ......|.|++++
T Consensus        84 L~I~~l~~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~~l  121 (150)
T 3dmm_D           84 LSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVL  121 (150)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEESCC
T ss_pred             EEECCCChhhCEEEEEEEecCCcceECCCEEEEEeCCC
Confidence            99999999999999999964332  2344578888764

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.75  E-value=8.1e-18  Score=105.18  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe---EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH---ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~---~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++..  .+.|.|||+..+.   .+.      ..++||.+..+...+.++|+|++++++|
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~L~I~~~~~~D   77 (108)
T 2coq_A            4 DQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTI------SIGGRYSETVDEGSNSASLTIRDLRVED   77 (108)
T ss_dssp             EEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEEC------CCBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEE------EeCCceEEEEcCCCCEEEEEECCCCccc
Confidence            4556778999999999999998653  5689999986322   221      2357998765556678999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++..
T Consensus        78 sG~Y~C~~~~   87 (108)
T 2coq_A           78 SGTYKCKAYR   87 (108)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999954

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=99.75  E-value=9.7e-18  Score=107.91  Aligned_cols=99  Identities=15%  Similarity=0.056  Sum_probs=70.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +++ +..+++.+|++|+|+|.++...  ...|.|||+.+   +..|.. ..... ...+||.+..  ..+.++|+|++++
T Consensus         4 v~Q-p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~l~   80 (123)
T 3t0v_A            4 LTQ-SPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK--SGTSASLAISGLR   80 (123)
T ss_dssp             BEE-CCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCC
T ss_pred             cCc-cCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc--cCCEEEEEECCCC
Confidence            344 4578999999999999998653  47899999873   233332 22211 1357999864  4578999999999


Q ss_pred             CCCCEEEEEeecCCC----CeeEEEEeceeccc
Q psy14080         82 KRDNGTYECQAQPYT----TTSHSQNAPGLGDL  110 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~----~~s~~~~L~V~g~~  110 (113)
                      ++|+|+|+|++....    ..-....|.|++..
T Consensus        81 ~~DsG~Y~C~~~~~~~~~~~fG~GT~l~V~~~~  113 (123)
T 3t0v_A           81 SEDEADYYCLSWDDSLNGWVFGGGTKVTVLDAA  113 (123)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEBCCEEEEECCCC
T ss_pred             HHHCEEEEEEEEcCCCCceEECCCEEEEEccCC
Confidence            999999999996432    22344677777654

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=99.75  E-value=1.7e-17  Score=105.52  Aligned_cols=82  Identities=10%  Similarity=0.129  Sum_probs=62.0

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---c-eEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---V-LTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~-~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   ..+ ...   . ....  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 1mfa_H            7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCC
Confidence            556789999999999999853  2568999998742   222 221   1 1111  24799998766678899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (120)
T 1mfa_H           87 TSEDSAVYYCTRGG  100 (120)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999964

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.75  E-value=3e-17  Score=107.10  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....++++.+|++|+|+|.+.+.+.+.|.|++.....+ +........++||.+... ..++++|+|.+++.+|+|.|+
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i-~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~  119 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTL-YFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYT  119 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEE-EETTEECSCCTTEEEEEE-CSSEEEEEECSCCGGGCEEEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEE-EECCceecccCCEEEecC-CCCeEEEEECCCChhhCEEEE
Confidence            345667899999999999999988888999997654433 434444445789987643 456789999999999999999


Q ss_pred             EeecCCCCeeEEEEeceecc
Q psy14080         90 CQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |.+...+..+..+.|.|.+.
T Consensus       120 C~~~n~~~~~~~~~L~V~~~  139 (145)
T 1z9m_A          120 CSIFTMPVRTAKSLVTVLGI  139 (145)
T ss_dssp             EEECSSSCEEEEEEEEEECC
T ss_pred             EEEEcCCCceEEEEEEEEeC
Confidence            99965477788899998763

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=99.75  E-value=7.5e-18  Score=110.13  Aligned_cols=101  Identities=11%  Similarity=0.060  Sum_probs=68.4

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc---e-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV---L-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~---~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ....   . ..  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (136)
T 1zvy_A            7 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV   86 (136)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEecCCCCCCcEEEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            445789999999999999853  357899999974   2333 2211   1 11  125799998665678899999999


Q ss_pred             CCCCCEEEEEeecCC-----------C--CeeEEEEeceecccccC
Q psy14080         81 QKRDNGTYECQAQPY-----------T--TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-----------~--~~s~~~~L~V~g~~~~~  113 (113)
                      +++|+|+|+|++...           .  ..-....|.|++..+.|
T Consensus        87 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~fG~GT~l~V~~~~~~~  132 (136)
T 1zvy_A           87 KSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQGTQVTVSSRGRHH  132 (136)
T ss_dssp             CGGGCEEEEEEECSSCCCGGGTTCGGGCSEECCCEEEEC-------
T ss_pred             ChhHCEEEEEEEEeCCccccccccccccceECCCEEEEEccCcccc
Confidence            999999999999643           1  12356688888887765

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=101.70  Aligned_cols=95  Identities=15%  Similarity=0.036  Sum_probs=74.2

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+.. ...++++.+|+++.|.|.+.+.+.+.|.|+|..  ..+       ..+.|+.+..  +.+..+|.|.+++.+
T Consensus         7 ~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~   74 (103)
T 3qp3_A            7 HAPRITL-RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNG--VEL-------QESSKIHYTN--TSGVLTLEILDCHTD   74 (103)
T ss_dssp             EEEEEEE-CCCCEEEETTCCEEEEEEEEEESCCEEEEEETT--EEC-------CCCSSEEEEE--ETTEEEEEECSCCGG
T ss_pred             CCCEEEe-CCcceEEeCCCeEEEEEEEEecCCCEEEEEECC--EEC-------CCCCCEEEEE--CCCEEEEEEcCCCcc
Confidence            3555544 346789999999999999999999999999843  222       2356787763  345679999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceeccc
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g~~  110 (113)
                      |+|.|+|.+ +..+..+..+.|.|.|..
T Consensus        75 D~G~Y~C~a~N~~G~~~~~~~l~V~~~~  102 (103)
T 3qp3_A           75 DSGTYRAVCTNYKGEASDYATLDVTGGD  102 (103)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEECCC
Confidence            999999999 556778889999998863

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=99.75  E-value=3.3e-18  Score=110.08  Aligned_cols=101  Identities=12%  Similarity=0.042  Sum_probs=69.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEc-------cCCCCEEEEEecCCCe----EEEecc-eE---EcCCCCEEEEEeCCCCc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVR-------DIVKVRVSWVRRRDWH----ILTSGV-LT---YTNDARFQVIHTDGSDD   72 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~-------~~~~~~V~W~k~~~~~----~l~~~~-~~---~~~~~R~~~~~~~~~~~   72 (113)
                      ...+.+..+++.+|++|+|+|.++       +.....|.|||+....    ++.... ..   ....+||.+..+...++
T Consensus         8 ~~~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~   87 (132)
T 1nko_A            8 YSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKN   87 (132)
T ss_dssp             CEEEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTB
T ss_pred             eEEeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCc
Confidence            344556778999999999999997       3345789999987432    222211 10   12357999875444578


Q ss_pred             EEEEEccCCCCCCEEEEEeecCCCC---e-eEEEEeceec
Q psy14080         73 WNLQIKFLQKRDNGTYECQAQPYTT---T-SHSQNAPGLG  108 (113)
Q Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~~---~-s~~~~L~V~g  108 (113)
                      ++|+|++++++|+|+|+|++...+.   . ...+.|.|.+
T Consensus        88 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~  127 (132)
T 1nko_A           88 CTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTA  127 (132)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEEC
T ss_pred             eEEEEcccCcccCeeEEEEEEcCCCcccccCCceEEEecc
Confidence            8999999999999999999965431   1 2346777765

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=99.75  E-value=3.8e-18  Score=107.73  Aligned_cols=85  Identities=15%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc--e--EEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV--L--TYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~--~--~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .+..+++.+|++|+|+|.+++.  ....+.|||+.+   ...+ ....  .  ....++||.+..+..++.++|+|++++
T Consensus         5 ~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   84 (114)
T 1u9k_A            5 EEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   84 (114)
T ss_dssp             CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCC
Confidence            3456889999999999999754  246899999973   2333 3221  1  111258999886666788999999999


Q ss_pred             CCCCEEEEEeecCCC
Q psy14080         82 KRDNGTYECQAQPYT   96 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~   96 (113)
                      ++|+|+|+|++...+
T Consensus        85 ~~Dsg~Y~C~~~~~~   99 (114)
T 1u9k_A           85 VTDSGLYRCVIYHPP   99 (114)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             hHHCEEEEEEEecCC
Confidence            999999999996543

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=99.75  E-value=2.7e-17  Score=103.64  Aligned_cols=96  Identities=18%  Similarity=0.101  Sum_probs=67.5

Q ss_pred             cceEEEecCCcEEEEEEEccC---CCCEEEEEecCC---Ce-EEEec--ceE-Ec--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRD---WH-ILTSG--VLT-YT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~---~~-~l~~~--~~~-~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .+.+++.+|++|+|+|.++..   +...|.|||+.+   +. ++...  ... ..  ..+||.+..+.....++|+|+++
T Consensus         5 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~   84 (116)
T 3bj9_1            5 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   84 (116)
T ss_dssp             CSEEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCcEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCC
Confidence            345889999999999999854   456899999873   23 33221  111 11  25799987654445679999999


Q ss_pred             CCCCCEEEEEeecCCC--CeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      +++|+|+|+|++....  .......|.|++
T Consensus        85 ~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~  114 (116)
T 3bj9_1           85 QPEDEAMYYCAMGARSTHVFGSGTQLTVLS  114 (116)
T ss_dssp             CGGGCEEEEEEECCSSCCEECCCEEEEEES
T ss_pred             ChhHCEEEEEEEeCCCCcEECCCEEEEEec
Confidence            9999999999996532  223456777765

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=104.69  Aligned_cols=94  Identities=18%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             cceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCe--EEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWH--ILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~--~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +..+++.+|++|+|+|.++.. ....+.||||.++.  .+..  +.......+||.+..+ .++.++|+|.+++++|+|+
T Consensus         4 p~~v~~~~G~svtl~C~~s~~~~~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~-~~~~~~L~I~~l~~~Dsg~   82 (106)
T 2frg_P            4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL-GGGLLQVEMVTLQEEDAGE   82 (106)
T ss_dssp             CEEEEECTTCCEEEEEECCGGGTTSEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEE-ETTEEEEEECSCCGGGCEE
T ss_pred             CcEEEEecCCcEEEEeEecCCcccCcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcC-CCCEEEEEEccCCHHHCEE
Confidence            445788999999999999743 34578999998643  2221  1212234689998533 4567999999999999999


Q ss_pred             EEEeecCCC--CeeEEEEecee
Q psy14080         88 YECQAQPYT--TTSHSQNAPGL  107 (113)
Q Consensus        88 Y~C~~~~~~--~~s~~~~L~V~  107 (113)
                      |+|++...+  .....+.|.|+
T Consensus        83 Y~C~~~~~~~~d~~~~v~L~V~  104 (106)
T 2frg_P           83 YGCMVDGARGPQILHRVSLNIL  104 (106)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeecCCCCCEeEEEEEEEe
Confidence            999996543  22466777774

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=99.75  E-value=1.1e-17  Score=105.51  Aligned_cols=95  Identities=12%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             ceEEEecCCcEEEEEEEcc--CCCCEEEEEecC-CC----e-EEEecc--eEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRD--IVKVRVSWVRRR-DW----H-ILTSGV--LTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~-~~----~-~l~~~~--~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+++.+|++|+|+|.++.  .....|.|||+. ++    . ++....  .....++||.+..+...++++|+|++++++
T Consensus         4 ~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   83 (116)
T 3bia_X            4 DTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRG   83 (116)
T ss_dssp             EEEEEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             cEEEEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChh
Confidence            4578999999999999973  234579999997 43    2 333321  223346799876545667899999999999


Q ss_pred             CCEEEEEeecCCC---CeeEEEEeceec
Q psy14080         84 DNGTYECQAQPYT---TTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~~---~~s~~~~L~V~g  108 (113)
                      |+|+|+|++...+   .....+.|.|..
T Consensus        84 Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~  111 (116)
T 3bia_X           84 DSGVYCCRIEVPGWFNDVKKNVRLELRR  111 (116)
T ss_dssp             GCEEEEEEEECSSSSCCEEEEEEEEEEC
T ss_pred             HCEEEEEEEEcCCcccceEEEEEEEEec
Confidence            9999999996533   335678888765

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.75  E-value=8.8e-18  Score=105.27  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=63.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC----CCEEEEEecCC---Ce-EEEecceEE-cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRD---WH-ILTSGVLTY-TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~---~~-~l~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++.+..+++.+|++|+|+|.+++.+    .+.|.|||+.+   .. ++....... ...+||.+..  +++.++|+|++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~   81 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDP   81 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESS
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc--cCCEEEEEECC
Confidence            34556678999999999999998765    46899999863   22 232222111 1257999863  45789999999


Q ss_pred             CCCCCCEEEEEeecCC
Q psy14080         80 LQKRDNGTYECQAQPY   95 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~   95 (113)
                      ++++|+|+|+|++...
T Consensus        82 v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           82 VEADDVATYYCQQTNE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999653

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=99.75  E-value=1.1e-17  Score=106.78  Aligned_cols=81  Identities=11%  Similarity=0.021  Sum_probs=61.6

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec--c--eEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG--V--LTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~--~--~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.++..  ....++|||+.+   +..| ...  .  ...  ...+||.+..+..++.++|+|++++
T Consensus         8 ~~~~v~~G~~vtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   87 (120)
T 3iy0_H            8 GTELVAPGGGVKLSCGASGYTFTNYDMNWVRQRPGAGLEWIGWIFPGDGSARGNEKFGGAAALAAAAAGGTAYMGLGGLS   87 (120)
T ss_dssp             CCEEECSSCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEecCCCCEEEEEEeECCCccCCeEEEEEECCCCCCEEEEEEeCCCCceecChhhcCcEEEEEecCCCEEEEEECCCC
Confidence            35889999999999999853  346799999874   2333 221  1  111  2358999987666789999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        88 ~~Dsg~Y~C~~~~  100 (120)
T 3iy0_H           88 SEDSGVYFCARRG  100 (120)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             hHHCEEEEEEEEe
Confidence            9999999999965

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=99.74  E-value=1e-17  Score=109.57  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec---c-eEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG---V-LTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~---~-~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ...   . ....  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (137)
T 1rjc_A            7 SGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   86 (137)
T ss_dssp             BCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             cCCEEEecCCCEEEEEEecCCcCCCcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            445789999999999999753  357899999974   2333 221   1 1111  25799998766678899999999


Q ss_pred             CCCCCEEEEEeecCC------------C--CeeEEEEeceecccccC
Q psy14080         81 QKRDNGTYECQAQPY------------T--TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~------------~--~~s~~~~L~V~g~~~~~  113 (113)
                      +++|+|+|+|++...            .  ..-....|.|++..+.|
T Consensus        87 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~fG~GT~l~V~~~~~~~  133 (137)
T 1rjc_A           87 KPEDTAMYYCAADTSTWYRGYCGTNPNYFSYWGQGTQVTVSSRGRHH  133 (137)
T ss_dssp             CGGGCEEEEEEECCTTSCCSSCCCCGGGCCEECCCEEEEEC------
T ss_pred             CHHHCEEEEEEEEcCCccccccccccccccEECCCEEEEEccCcccc
Confidence            999999999999643            1  12355678888887765

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=99.74  E-value=1.7e-17  Score=106.69  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---ceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---VLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   ..| ...   ....  ...+||.+..+..++.++|+|++++
T Consensus         7 p~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   86 (124)
T 1yc7_A            7 SGGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQ   86 (124)
T ss_dssp             ECCEEECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            456889999999999999853  3568999999742   222 221   1111  1257999987666788999999999


Q ss_pred             CCCCEEEEEeecCC---CC--eeEEEEeceeccc
Q psy14080         82 KRDNGTYECQAQPY---TT--TSHSQNAPGLGDL  110 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~---~~--~s~~~~L~V~g~~  110 (113)
                      ++|+|+|+|++...   ..  .-....|.|+...
T Consensus        87 ~~Dsg~Y~C~~~~~~~~~~~~fG~GT~l~v~~~~  120 (124)
T 1yc7_A           87 REDTGMYYCQIQCGVRSIREYWGQGTQVTVSSHH  120 (124)
T ss_dssp             GGGCEEEEEEEEECSSSCEEEECCCEEEEEC---
T ss_pred             HHHCEEEEEEEEeCCCcccceECCCEEEEEeccc
Confidence            99999999999643   21  1234566666543

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=99.74  E-value=6.9e-18  Score=109.84  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc----eEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV----LTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~----~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ....    ....  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (134)
T 1zvh_A            7 SGGGSVQAGGSLRLSCAASGYIASINYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYLQMNSL   86 (134)
T ss_dssp             ECCEEECTTCCEEEEEEEEESGGGEEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEccCCCEEEEEEeCCCCcCCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            446789999999999999853  346799999974   2333 2211    1111  24799998766678899999999


Q ss_pred             CCCCCEEEEEeecCC---------C--CeeEEEEeceecccccC
Q psy14080         81 QKRDNGTYECQAQPY---------T--TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~---------~--~~s~~~~L~V~g~~~~~  113 (113)
                      +++|+|+|+|++...         .  ..-....|.|++..+.|
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~fG~GT~l~V~~~~~~~  130 (134)
T 1zvh_A           87 KPEDTALYYCAAARQGWYIPLNSYGYNYWGQGTQVTVSSRGRHH  130 (134)
T ss_dssp             CGGGCEEEEEEEEESSCCCTTCGGGEEEECCCEEEEEC------
T ss_pred             CHHHCEEEEEEEecCcccccccccCccEECCCEEEEEccccccc
Confidence            999999999999643         1  12245678888777654

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1

Probab=99.74  E-value=2.3e-17  Score=107.16  Aligned_cols=86  Identities=13%  Similarity=0.016  Sum_probs=63.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEEEe-cceE----EcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HILTS-GVLT----YTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l~~-~~~~----~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .++....+++.+|++++|+|.+++.  ....+.||||.++   ..|.. ....    ...++||.+..++.++.++|+|.
T Consensus         7 v~Q~p~~vs~~~G~svtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~li~~~~~~~~~~~~~~gRfsis~~~s~~~~~LtIs   86 (127)
T 1q8m_A            7 TKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMV   86 (127)
T ss_dssp             EEECEEEEEEETTCCEEEEEECCCGGGTTSCEEEEEEETTTEEEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEEC
T ss_pred             EEecCCEEEEecCCCEEEEEEECCcccCCCEEEEEEeCCCCCCEEEEEEcCCCceeccccCCcEEEEEeCCCCEEEEEEC
Confidence            3455566899999999999999743  3456899999853   22221 1100    11237999987777889999999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++++|+|+|+|++..
T Consensus        87 ~lq~eDsa~Y~Ca~~~  102 (127)
T 1q8m_A           87 NLQVEDSGLYQCVIYQ  102 (127)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             CCCHHHCEEEEEEEEC
Confidence            9999999999999965

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.74  E-value=1e-17  Score=105.74  Aligned_cols=85  Identities=19%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEE-Eec-ceEEc---CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHIL-TSG-VLTYT---NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l-~~~-~~~~~---~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++.+..+++.+|++|+|+|.++.. +...|.|||+..   ...+ ... .....   .++||.+..+...+.++|+|+++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (116)
T 1tvd_A            4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             ecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccC
Confidence            345667899999999999999854 456899999873   2223 222 11111   26899987655667899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        84 ~~~DsG~Y~C~~~~   97 (116)
T 1tvd_A           84 RTEDSATYYCAFTL   97 (116)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ChHHCEEEEEEEeC
Confidence            99999999999965

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.74  E-value=1.8e-17  Score=104.17  Aligned_cols=79  Identities=22%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe---EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH---ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~---~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.  +.+.|.|||+..+.   .+.      ..++||.+..+...+.++|+|++++++|
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~L~I~~v~~~D   77 (111)
T 2ywz_A            4 DQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTI------SIGGRYDETVDKGSKSFSLRISDLRVED   77 (111)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC------CSBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEee------EeCCCEEEEEeCCCCEEEEEECCCChhc
Confidence            455677899999999999999865  46799999986321   221      2357998765556678999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++..
T Consensus        78 sG~Y~C~~~~   87 (111)
T 2ywz_A           78 SGTYKCQADY   87 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEc
Confidence            9999999964

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.74  E-value=3.2e-17  Score=99.77  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=70.9

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ....+++.+|+++.|.|.+.+.+.+.|.|+|..  ..+.      ..+.|+...  .+.+.++|.|.+++.+|
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~--~~~~------~~~~~~~~~--~~~~~~~L~i~~~~~~D   73 (99)
T 1u2h_A            5 PPTFKV-SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNR--QPVR------PDQRRFAEE--AEGGLCRLRILAAERGD   73 (99)
T ss_dssp             EEEEEE-CCCCEEEETTCCEEEEEEEEEESCCEEEEEETT--EECC------CBTTEEEEE--CGGGEEEEEESSCCGGG
T ss_pred             CCEEEE-cCCceEecCCCEEEEEEEEEEcCCCEEEEEECC--EECC------CCCCEEEEE--CCCCEEEEEEccCCcCC
Confidence            444443 455678999999999999999888999999843  2221      124456554  33456799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..+..+..+.|.|.|+
T Consensus        74 ~G~Y~C~a~N~~g~~~~~~~l~V~~~   99 (99)
T 1u2h_A           74 AGFYTCKAVNEYGARQCEARLEVRGE   99 (99)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             CEEEEEEEEECCCceeEEEEEEEECC
Confidence            99999999 45677788899999874

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.74  E-value=5.9e-17  Score=112.64  Aligned_cols=101  Identities=10%  Similarity=0.025  Sum_probs=74.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---Ce-EEE-ecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WH-ILT-SGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~-~l~-~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.+++.....|+||||.+   .. +++ ........++||.+..+..++.++|+|++++.+
T Consensus         6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   85 (210)
T 2eys_A            6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   85 (210)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcc
Confidence            3455677899999999999999877667899999974   22 333 121111236899998767778899999999999


Q ss_pred             CCEEEEEeecCC----CCe--eEEEEeceecc
Q psy14080         84 DNGTYECQAQPY----TTT--SHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~----~~~--s~~~~L~V~g~  109 (113)
                      |+|+|+|++...    ...  .....|.|++.
T Consensus        86 Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~  117 (210)
T 2eys_A           86 DSASYICVVSDRGSTLGRLYFGRGTQLTVWPD  117 (210)
T ss_dssp             GCEEEEEEEESCSSTTCCEEECCCEEEEEECC
T ss_pred             cCceEEEEEEccCCCcccceECCCEEEEEECC
Confidence            999999999652    211  23357777764

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=99.74  E-value=3.1e-18  Score=112.74  Aligned_cols=101  Identities=10%  Similarity=-0.010  Sum_probs=71.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC---eEE-Eec-ce-EEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW---HIL-TSG-VL-TYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~---~~l-~~~-~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++....+++.+|++|+|+|.++... .+.|+|||+..+   ..| ... .. ....++||.+..+...+.++|+|+++++
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   83 (142)
T 2ol3_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (142)
T ss_dssp             BCCCSEEEEETTCCEEECCBCCCCCSSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCT
T ss_pred             EecCCeEEEecCCCEEEEEEecCCcCCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCCh
Confidence            4456678999999999999998654 458999999742   233 222 11 1112579998644566789999999999


Q ss_pred             CCCEEEEEeecC-----CC--CeeEEEEeceeccc
Q psy14080         83 RDNGTYECQAQP-----YT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        83 ~D~G~Y~C~~~~-----~~--~~s~~~~L~V~g~~  110 (113)
                      +|+|+|+|++..     ..  .......|.|++..
T Consensus        84 ~Dsg~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~~  118 (142)
T 2ol3_A           84 EDSAVYFCAMRGDYGGSGNKLIFGTGTLLSVKPGS  118 (142)
T ss_dssp             TTCEEEEEEEECSSSSCSSCEEECCCEEEEEECCC
T ss_pred             hhCEEEEEEEEcCcCCcccccEECCCEEEEEecCC
Confidence            999999999964     11  12234577777653

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=99.74  E-value=1.2e-17  Score=105.55  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             ecceEEEecCCcEEEEEEEccC------CCCEEEEEecCCC--eEEEecc-eE---EcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI------VKVRVSWVRRRDW--HILTSGV-LT---YTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~------~~~~V~W~k~~~~--~~l~~~~-~~---~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .+..+++.+|++|+|+|.++..      ....|.|||+..+  .++.... ..   ....+||.+..+...++++|+|++
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (119)
T 1qfo_A            6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             cCCEEEEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEEEcc
Confidence            4467899999999999999743      2368999999742  2333321 11   112479988754446788999999


Q ss_pred             CCCCCCEEEEEeecCCCC----eeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQPYTT----TSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~~----~s~~~~L~V~g~  109 (113)
                      ++++|+|+|+|++...+.    ....+.|.|.++
T Consensus        86 v~~~Dsg~Y~C~v~~~~~~~~~~~~~~~L~V~~~  119 (119)
T 1qfo_A           86 LKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTTD  119 (119)
T ss_dssp             CCGGGCEEEEEEEECC-CCEEECSSCEEEEEEC-
T ss_pred             CCcccCceEEEEEEeCCCceecccCCeEEEEecC
Confidence            999999999999976432    113568888764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.74  E-value=4.7e-17  Score=99.08  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      .+....++++.+|+++.|.|.+.+. +.+.|.|||..  ..+       ..+.|+.+..  .++..+|.|.+++.+|+|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~   72 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGV--RQL-------ENSEKYEITY--EDGVAILYVKDITKLDDGT   72 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETT--EEC-------CSSSSEEEEE--ETTEEEEEECSCCGGGCEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECC--EEC-------cCCCCEEEEE--cCCeEEEEEecCChhhCeE
Confidence            4455667899999999999999986 88899999853  222       2467888753  2457799999999999999


Q ss_pred             EEEeec-CCCCeeEEEEeceecc
Q psy14080         88 YECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        88 Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.+. ..+..+..+.|.|.+.
T Consensus        73 Y~C~a~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           73 YRCKVVNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             EEEEEECSSCEEEEEEEEEETTT
T ss_pred             EEEEEECCCCeEeEEEEEEEEec
Confidence            999994 5577788899998864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.74  E-value=5.4e-17  Score=98.76  Aligned_cols=94  Identities=13%  Similarity=-0.032  Sum_probs=71.9

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ...++++.+|+++.|.|.+.+.+.+.|.|||..  ..+       ..+.|+.+.. ...+..+|.|.+++.+|
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g--~~~-------~~~~~~~~~~-~~~~~~~L~i~~v~~~D   73 (99)
T 1g1c_A            5 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG--VKI-------ERSDRIYWYW-PEDNVCELVIRDVTGED   73 (99)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETT--EEC-------CCCSSEEEEE-EETTEEEEEECSCCGGG
T ss_pred             CCceEe-cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECC--EEC-------CCCCCEEEEE-cCCCEEEEEECCCCcCC
Confidence            444443 456688999999999999999888999999843  222       2345665542 13457799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..+..+..+.|.|.++
T Consensus        74 ~G~Y~C~a~N~~g~~~~~~~l~V~~~   99 (99)
T 1g1c_A           74 SASIMVKAINIAGETSSHAFLLVQAK   99 (99)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEECCCcEEEEEEEEEecC
Confidence            99999999 55677788899999874

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=99.74  E-value=9.5e-18  Score=108.05  Aligned_cols=82  Identities=20%  Similarity=0.139  Sum_probs=62.4

Q ss_pred             cceEEEecCCcEEEEEEEccC---CCCEEEEEecCC---Ce-EEEe--cceE-Ec--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRD---WH-ILTS--GVLT-YT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~---~~-~l~~--~~~~-~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.++..   ....|+|||+..   .. ++..  +... ..  ..+||.+..+...+.++|+|+++
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   86 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCC
Confidence            456899999999999999864   346899999974   22 3332  2211 21  25799998666678899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~DsG~Y~C~~~~  100 (126)
T 2h32_A           87 QPEDEAMYYCAMGA  100 (126)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ChhHCEEEEEEEEc
Confidence            99999999999954

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.73  E-value=5.4e-17  Score=104.95  Aligned_cols=100  Identities=12%  Similarity=0.073  Sum_probs=69.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC---CCEEEEEecCCCe-EEEe-cceEE------cCCCCEEEEEe-CCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWH-ILTS-GVLTY------TNDARFQVIHT-DGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~-~l~~-~~~~~------~~~~R~~~~~~-~~~~~~~L~I   77 (113)
                      +.....+++.+|++|+|+|.+...+   .+.|.|||+.... ++.. .....      .-.+|+.+..+ ...++++|+|
T Consensus        10 ~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   89 (139)
T 1pko_A           10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRI   89 (139)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEE
T ss_pred             ECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEE
Confidence            3344568999999999999998543   3689999987432 2222 11111      11468887632 1235789999


Q ss_pred             ccCCCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         78 KFLQKRDNGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      .+++.+|+|.|+|.+... +..+..+.|.|.+.
T Consensus        90 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P  122 (139)
T 1pko_A           90 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  122 (139)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             ccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence            999999999999999643 45677889998753

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.73  E-value=2.6e-17  Score=103.92  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             eecceEEEecCCcEEEEEEEccC----CCCEEEEEecCCC----e-EEEec-ceEEc-----CCCCEEEEEeCCCCcEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDW----H-ILTSG-VLTYT-----NDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~----~-~l~~~-~~~~~-----~~~R~~~~~~~~~~~~~L   75 (113)
                      .....+++.+|++|+|+|.+...    ....|.|+|+...    . ++... .....     -.+|+.+..+...++++|
T Consensus         4 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (124)
T 1neu_A            4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (124)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             ecCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEE
Confidence            34567889999999999999643    4578999998642    1 33221 11111     146888753333467899


Q ss_pred             EEccCCCCCCEEEEEeecCCCC---eeEEEEeceecc
Q psy14080         76 QIKFLQKRDNGTYECQAQPYTT---TSHSQNAPGLGD  109 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~~~---~s~~~~L~V~g~  109 (113)
                      +|++++.+|+|.|+|.+...+.   .+..++|.|...
T Consensus        84 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~  120 (124)
T 1neu_A           84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK  120 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC-
T ss_pred             EEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecC
Confidence            9999999999999999975432   467889999764

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=99.73  E-value=4.1e-18  Score=108.35  Aligned_cols=89  Identities=13%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCC----CCEEEEEecC--CCeEEEecceEEcCCCCEEEEEeC---CCCcEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHTD---GSDDWN   74 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~~---~~~~~~   74 (113)
                      .++.+....+..+++.+|++|+|+|.++...    ...|.|||+.  ++..+...  ....++||.+..+.   ..+.++
T Consensus         5 ~~~~~~v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~--~~~~~~R~~~~~~~~~~~~~~~s   82 (120)
T 3noi_A            5 FQGALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNG--TPEFRGRLAPLASSRFLHDHQAE   82 (120)
T ss_dssp             CCCBCCEECCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTT--CTTTTTCEECCCHHHHHTTCBCC
T ss_pred             EeEEEEEcCCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceeccc--ccccCCcEEeecccccccCCcEE
Confidence            3555666667789999999999999998765    4679999987  43332211  11235788875443   567889


Q ss_pred             EEEccCCCCCCEEEEEeecC
Q psy14080         75 LQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      |+|++++++|+|+|+|.+..
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~  102 (120)
T 3noi_A           83 LHIRDVRGHDASIYVCRVEV  102 (120)
T ss_dssp             EEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCChhhCEEEEEEEEE
Confidence            99999999999999999964

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=99.73  E-value=2.6e-17  Score=113.64  Aligned_cols=99  Identities=14%  Similarity=0.053  Sum_probs=72.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ++ ...+++.+|++|+|+|.+++.....|+|||+.++   . +++........++||.+..+..++.++|+|++++.+|+
T Consensus         4 ~Q-p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds   82 (200)
T 2nw2_A            4 DQ-PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDS   82 (200)
T ss_dssp             BC-CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EC-CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccC
Confidence            44 6778999999999999998776678999999742   2 33332211112789999876777889999999999999


Q ss_pred             EEEEEeecC---CC--CeeEEEEeceecc
Q psy14080         86 GTYECQAQP---YT--TTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~~---~~--~~s~~~~L~V~g~  109 (113)
                      |+|+|++..   ..  .......|.|++.
T Consensus        83 g~Y~C~~~~~~~~~~~~fg~gt~L~V~~~  111 (200)
T 2nw2_A           83 ASYLCAVQASGGSYIPTFGRGTSLIVHPY  111 (200)
T ss_dssp             EEEEEEEC---CCCCCEECCCEEEEEECC
T ss_pred             CcEEEEEEcCCcceeeeeCCCEEEEEecC
Confidence            999999964   11  1123457777764

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=99.73  E-value=1.6e-17  Score=108.54  Aligned_cols=95  Identities=19%  Similarity=0.086  Sum_probs=67.2

Q ss_pred             cceEEEecCCcEEEEEEEccCC---CCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+++.+|++|+|+|.++...   .+.|+|||+.+   +..|........  ..+||.+..  ..+.++|+|++++++|
T Consensus        12 ~~~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~--~~~~~sL~I~~v~~~D   89 (135)
T 1p4b_L           12 ESALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTED   89 (135)
T ss_dssp             CSEEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCCGGG
T ss_pred             CCcEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEc--CCCEEEEEECCCChhH
Confidence            3458999999999999998664   56899999874   233322211121  257999874  3568999999999999


Q ss_pred             CEEEEEeecCCCC--eeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTT--TSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~--~s~~~~L~V~g~  109 (113)
                      +|+|+|++.....  ......|.|++.
T Consensus        90 sG~Y~C~~~~~~~~~fg~GT~L~V~~~  116 (135)
T 1p4b_L           90 EAIYFCALWYSNHWVFGGGTKLTVLGG  116 (135)
T ss_dssp             CEEEEEEEECSSCEEECCCEEEEEC--
T ss_pred             CEEEEEEEecCCCCEECCCEEEEEEcC
Confidence            9999999965332  234567777654

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.73  E-value=9.2e-18  Score=105.17  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             ceEEEecCCcEEEEEEEcc-CCCCEEEEEecCC-----C-eEEEec-c-eEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRD-----W-HILTSG-V-LTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~-----~-~~l~~~-~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ..+++.+|++|+|+|.+.. .....|.|||+..     . .++..+ . .....++||.+..+...+.++|+|++++.+|
T Consensus         5 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   84 (116)
T 2or8_A            5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESD   84 (116)
T ss_dssp             EEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGG
T ss_pred             ceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCccc
Confidence            4578899999999999975 3456799999862     2 233322 1 1133578998754345677899999999999


Q ss_pred             CEEEEEeecCCC-C--eeEEEEeceecc
Q psy14080         85 NGTYECQAQPYT-T--TSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~-~--~s~~~~L~V~g~  109 (113)
                      +|.|+|.+...+ .  .+..+.|.|...
T Consensus        85 sG~Y~C~v~~~~~~~~~~~~~~l~V~p~  112 (116)
T 2or8_A           85 SGLYCCRVEIPGWFNDQKVTFSLQVKPE  112 (116)
T ss_dssp             CEEEEEEECCSSTTCCEEEEEEEEEECS
T ss_pred             CEEEEEEEEcCCcccccEEEEEEEECCc
Confidence            999999997543 2  366777777653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.73  E-value=5.8e-17  Score=101.47  Aligned_cols=94  Identities=12%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+.. ..+.+++.+|++++|.|.+.+.+.+.|.|+|.. .. +       ..+.|+.+..  .....+|.|.+++.+
T Consensus         6 ~pp~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~-~~-~-------~~~~~~~~~~--~~~~~~L~I~~v~~~   73 (114)
T 2cqv_A            6 SGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFR-KQ-I-------QESEHMKVEN--SENGSKLTILAARQE   73 (114)
T ss_dssp             CCCEESC-CCCSEEEETTCCEEEEEEEESSSSCEEEEEESS-SB-C-------CCSSSEEEEE--CSSEEEEEETTCCTT
T ss_pred             CCCEEEe-CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECC-EE-C-------cCCCCEEEEE--cCCEEEEEECCCChh
Confidence            4666654 556789999999999999999988999999853 21 1       2356888763  345779999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+. ..+..+..+.|.|.+.
T Consensus        74 D~G~Y~C~a~N~~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           74 HCGCYTLLVENKLGSRQAQVNLTVVDK  100 (114)
T ss_dssp             TCEEEEEEEECSSCEEECCEEEEEECS
T ss_pred             cCEEEEEEEEECCCcEEEEEEEEEECC
Confidence            9999999994 5567777888988764

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.73  E-value=1.6e-17  Score=105.63  Aligned_cols=95  Identities=17%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             ceEEEecCCcEEEEEEEccCC---CCEEEEEecCCC---eEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDW---HILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~---~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ..+++.+|++|+|+|.+++..   ...|.|||+..+   ..+........  ..+||.+..  .++.++|+|++++++|+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~~~~~Ds   85 (120)
T 1oaq_L            8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGNKAALTITGAQTEDE   85 (120)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGC
T ss_pred             CcEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEec--CCCeEEEEECCCChhhC
Confidence            348999999999999998764   578999998742   22322211111  257999874  35689999999999999


Q ss_pred             EEEEEeecCCCC--eeEEEEeceeccc
Q psy14080         86 GTYECQAQPYTT--TSHSQNAPGLGDL  110 (113)
Q Consensus        86 G~Y~C~~~~~~~--~s~~~~L~V~g~~  110 (113)
                      |+|+|++.....  ......|.|++..
T Consensus        86 G~Y~C~~~~~~~~~fg~gt~L~V~~~~  112 (120)
T 1oaq_L           86 AIYFCALWYSNHLVFGGGTKLTVLGQP  112 (120)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECC--
T ss_pred             eEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            999999964332  2345578887653

>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1

Probab=99.73  E-value=2.3e-17  Score=108.20  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=67.1

Q ss_pred             ceEEEecCCcEEEEEEEccC-----CCCEEEEEecCCC---eEE-Eec--c--eEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         14 QISTGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDW---HIL-TSG--V--LTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~---~~l-~~~--~--~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ..+++.+|++|+|+|.+++.     ....+.||||.++   ..| ...  .  ...  ...+||.+..+...+.++|+|.
T Consensus         8 ~~~~v~~G~~vtL~C~~s~~~~~~~~~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~   87 (137)
T 3eak_A            8 GGGLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAVAAIASMGGLTYYADSVKGRFTISRDNSKNTLYLQMN   87 (137)
T ss_dssp             CCCEECTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCEEECCCCCEEEEeEecCCccccccCcEEEEEEECCCCCCEEEEEEecCCCceecCCccCCCEEEEecCCCCEEEEEEC
Confidence            35789999999999999764     3468999999742   333 221  1  111  1357999986655678999999


Q ss_pred             cCCCCCCEEEEEeecCCC---------C--eeEEEEeceecccccC
Q psy14080         79 FLQKRDNGTYECQAQPYT---------T--TSHSQNAPGLGDLLMH  113 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~---------~--~s~~~~L~V~g~~~~~  113 (113)
                      +++++|+|+|+|++....         .  .-....|.|.+..+.|
T Consensus        88 ~lq~~Dsg~YyCa~~~~~~~~~~~~~~~~~fG~gt~l~v~~~~~~~  133 (137)
T 3eak_A           88 SLRAEDTAVYYCAAVRGYFMRLPSSHNFRYWGQGTLVTVSSRGRHH  133 (137)
T ss_dssp             SCCGGGCEEEEEEEESSCCSSCCCGGGCSEECCCEEEEEC------
T ss_pred             CCCHHHCEEEEEEEEcCCccccccccceeEECCCEEEEEccCCccc
Confidence            999999999999996531         1  1234567777666544

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=99.73  E-value=4.9e-17  Score=104.07  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Ee---c--c-eEEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TS---G--V-LTYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~---~--~-~~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ..+++.+|++|+|+|.+++.  ....|.|||+.++   ..| ..   .  . ....  ..+||.+..+..++.++|+|++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~   87 (124)
T 1dlf_H            8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (124)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEEECC
Confidence            46789999999999999853  3578999999742   222 22   1  1 1222  2579999876667889999999


Q ss_pred             CCCCCCEEEEEeecCC---C--CeeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQPY---T--TTSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~---~--~~s~~~~L~V~g~  109 (113)
                      ++++|+|+|+|++...   .  ..-....|.|++.
T Consensus        88 ~~~~Dsg~Y~C~~~~~~~~~~~~fg~GT~L~V~~~  122 (124)
T 1dlf_H           88 LRAEDTGIYYCTGIYYHYPWFAYWGQGTLVTVSAE  122 (124)
T ss_dssp             CCGGGCEEEEEEEEBTTBSSCCCCCCCEEEEEC--
T ss_pred             CCHHHCEEEEEEEEeCCCcccceECCCEEEEEecC
Confidence            9999999999999642   1  2234456777653

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=9.7e-18  Score=107.77  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC---CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCC----CCcEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG----SDDWNLQ   76 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~----~~~~~L~   76 (113)
                      .|..++....+++++.+|++|+|.|.+.+.   +.+.|.|||.. ...+..     ....|+.+.....    ...++|+
T Consensus        10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~   83 (118)
T 2edn_A           10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGK-WLELGS-----KSGARFSFKESHNSASNVYTVELH   83 (118)
T ss_dssp             CCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETT-TCCCCC-----STTSSCEEEEEECSSSCEEEEEEE
T ss_pred             CCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCC-EeccCC-----CCccEEEeccccccccccceEEEE
Confidence            456667777899999999999999999864   67899999942 111111     0134555532101    1268999


Q ss_pred             EccCCCCCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         77 IKFLQKRDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |++++.+|+|.|.|.+ +..+..+..++|.|.+.
T Consensus        84 I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           84 IGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             ESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             EeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999 56678899999999863

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=99.73  E-value=4.4e-17  Score=103.78  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eecc---eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSGV---LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~~---~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   ..+ ....   ....  ..+||.+..+..++.++|+|++++
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   86 (121)
T 1kxv_C            7 SGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLK   86 (121)
T ss_dssp             ECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCC
T ss_pred             CCCEEEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            346899999999999999854  3578999999742   233 2221   1121  257999987656778999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        87 ~~Dsg~Y~C~~~~   99 (121)
T 1kxv_C           87 PDDTAMYYCKPSL   99 (121)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999953

>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0

Probab=99.73  E-value=9.2e-17  Score=106.98  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-------------CCEEEEEecCC---CeEE-Eecc---e-EE--cCCCCEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-------------KVRVSWVRRRD---WHIL-TSGV---L-TY--TNDARFQVIH   66 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-------------~~~V~W~k~~~---~~~l-~~~~---~-~~--~~~~R~~~~~   66 (113)
                      ++.+. +++.+|++|+|+|.++...             ...+.||||.+   +..| ....   . ..  ...+||.+..
T Consensus         8 ~q~~~-~~v~~G~~vtL~C~~s~~~~~~~~~~~~~~~~~~~v~WyrQ~pg~~p~~L~~~~~~~~~~~~~~~~~~Rfs~s~   86 (151)
T 3k3q_A            8 VDSGG-GTLQAGKSLRLSCAISGLAFDGGAMGSEHRLTAGAMGWFRQAPGKDREFVAAISPRTDETYYAESLEGRFSVSR   86 (151)
T ss_dssp             EEECC-EEEETTCCEEEEEEEESCCCSSTTTCGGGTTSCCEEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTCEEEE
T ss_pred             EecCC-EEECCCCCEEEEEEEeCccccccccccccccCCeeEEEEEECCCCCcEEEEEEeCCCCceecCCccCCCEEEEe
Confidence            34443 8999999999999998642             46899999974   2333 2211   1 11  2358999987


Q ss_pred             eCCCCcEEEEEccCCCCCCEEEEEeecCCC------------CeeEEEEeceeccc
Q psy14080         67 TDGSDDWNLQIKFLQKRDNGTYECQAQPYT------------TTSHSQNAPGLGDL  110 (113)
Q Consensus        67 ~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~------------~~s~~~~L~V~g~~  110 (113)
                      +...+.++|+|++++++|+|+|+|++....            ..-....|.|+++.
T Consensus        87 ~~s~~~~sL~I~~lq~~Dsg~YyCa~~~~~~~~~~~~~~~~~~fG~GT~LtV~~~~  142 (151)
T 3k3q_A           87 DAAATMVFLQADNVRLDDTASYYCAADEDVTPRVMGVIPHADHWGQGTLVTVSSAA  142 (151)
T ss_dssp             CTTSSEEEEEESSCCSTTCEEEEEEEETTSCHHHHHHTTCCSEECCCEEEEEEC--
T ss_pred             cCCCCEEEEEECCCccccCEEEEEEEecCCcccccccccccccCCcCEEEEEeccc
Confidence            666688999999999999999999996421            12344567776654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.73  E-value=8.5e-17  Score=97.74  Aligned_cols=92  Identities=14%  Similarity=0.128  Sum_probs=72.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+. ....++++.+|+++.|.|.+.+.+.+.|.|+|.  +..+       ..+.|+.+..  +.+.++|.|.+++.+|
T Consensus         6 ~P~i~-~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~--g~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~d   73 (99)
T 3puc_A            6 KPVIV-TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD--GKAI-------TQGGKYKLSE--DKGGFFLEIHKTDTSD   73 (99)
T ss_dssp             EEEEE-ECCCCEEEESSSCEEEEEEEEEESCCEEEEEET--TEEC-------CSSSSEEEEE--ETTEEEEEECSCCGGG
T ss_pred             CCEEE-ecCccEEEeCCCcEEEEEEEEecCCCEEEEEEC--CEEC-------cCCCCEEEEE--eCCEEEEEECCCCccc
Confidence            44443 345678999999999999999988899999984  2222       2457888764  3456799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceec
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      +|.|+|.+ +..+..+..+.|.|.+
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           74 SGLYTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEeCCCcEeEEEEEEEEe
Confidence            99999999 4557778888998876

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=99.73  E-value=5.5e-17  Score=114.25  Aligned_cols=101  Identities=10%  Similarity=-0.015  Sum_probs=74.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecc-eEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGV-LTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.+++.....|+|||+.++   . +++... .....++||.+..+..++.++|+|++++.+
T Consensus         4 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   83 (229)
T 2q86_A            4 VEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLD   83 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEECCCEEEEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcc
Confidence            35566778999999999999998776678999999742   2 233221 112236899998767788999999999999


Q ss_pred             CCEEEEEeecCCC--CeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYT--TTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~--~~s~~~~L~V~g~  109 (113)
                      |+|+|+|++....  .......|.|++.
T Consensus        84 Dsg~Y~C~~~~~~~~~~g~gt~L~V~~~  111 (229)
T 2q86_A           84 DTATYFCVVGDRGSALFGSGTQLIVIPY  111 (229)
T ss_dssp             GCEEEEEEESCGGGCEECCCEEEEEECC
T ss_pred             cCccEEEEEEecCcccccCCEEEEEECc
Confidence            9999999996432  1223347777654

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.73  E-value=3.9e-17  Score=112.61  Aligned_cols=100  Identities=16%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecc-eEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGV-LTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+++.....|.|||+..+   . +++... .....++||.+..+..++.++|+|++++.+|
T Consensus         4 ~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   83 (203)
T 2bnu_A            4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (203)
T ss_dssp             EEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCccc
Confidence            4556778999999999999998776668999999742   2 333221 1112368999987667788999999999999


Q ss_pred             CEEEEEeecCC----C--CeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY----T--TTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~----~--~~s~~~~L~V~g~  109 (113)
                      +|+|+|++...    .  .......|.|++.
T Consensus        84 sg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~  114 (203)
T 2bnu_A           84 SATYLCAVRPTSGGSYIPTFGRGTSLIVHPY  114 (203)
T ss_dssp             CEEEEEEEEECSSSTTCCEECCCEEEEEECC
T ss_pred             CeEEEEEEEcCcCcceeeeeCCCEEEEEeCC
Confidence            99999999642    1  1123457777654

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=99.73  E-value=4.1e-17  Score=104.39  Aligned_cols=97  Identities=11%  Similarity=-0.033  Sum_probs=68.1

Q ss_pred             ecceEEEecCCcEEEEEEEcc--CCCCEEEEEecCC---CeEEEecc--e---EEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRD--IVKVRVSWVRRRD---WHILTSGV--L---TYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~~---~~~l~~~~--~---~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ....+++.+|++++|+|.++.  .....+.||||.+   +..|....  .   ....++||.+..+...+.++|+|.+++
T Consensus         5 ~~~~~~~~~G~svtl~C~~s~~~~~~~~~~Wyrq~pg~~~~~l~~~~~~s~~~~~~~~~Rfs~~~~~~~~~~~LtI~~l~   84 (119)
T 1smo_A            5 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQ   84 (119)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCcEEEcCCCCEEEEEEEeCCcCCCcEEEEEEeCCCCCCEEEEEEeCCCccCCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            344578899999999999973  2345689999974   33332211  0   011247999987677889999999999


Q ss_pred             CCCCEEEEEeecCCC--C--eeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT--T--TSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~--~--~s~~~~L~V~g  108 (113)
                      ++|+|+|+|++....  .  ....++|.|.-
T Consensus        85 ~~Dsg~Y~C~~~~~~~~~~~~~~~v~L~V~~  115 (119)
T 1smo_A           85 VEDSGLYQCVIYQPPKEPHMLFDRIRLVVTK  115 (119)
T ss_dssp             GGGCEEEEEEECCTTSCCEECSCEEEEEC--
T ss_pred             HHHCEEEEEEEEcCCCCcceEEEEEEEEEEC
Confidence            999999999996533  1  12467887753

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.72  E-value=2.4e-17  Score=107.18  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=68.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +++....+++.+|++|+|+|.+.+.  +.|.|||+..+   ..+.      ..++||.+..  +++.++|+|.+++.+|+
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~------~~~~r~~~~~--~~~~~~L~I~~~~~~Ds   89 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELV------SEEGRIVQTQ--NGSVYTLTIQNIQYEDN   89 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECC------CTTTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             eEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEE------EeCCCEEEEc--CCCEEEEEECCCChHHC
Confidence            4556778899999999999999976  78999998632   2221      1468999874  34678999999999999


Q ss_pred             EEEEEeecCCC-----CeeEEEEeceecc
Q psy14080         86 GTYECQAQPYT-----TTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~~~~-----~~s~~~~L~V~g~  109 (113)
                      |+|+|++....     .....+.|.|++.
T Consensus        90 G~Y~C~a~n~~g~~~~~~g~gt~L~V~~~  118 (133)
T 3khq_A           90 GIYFCKQKCDSANHNVTDSCGTELLVLGF  118 (133)
T ss_dssp             EEEEEEESSCC-------CCCEEEEEC--
T ss_pred             EEEEEEEEeCCCCcceeECCCEEEEEEec
Confidence            99999995432     2355678888874

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=99.72  E-value=4.5e-17  Score=110.22  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=64.5

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC------eEE-Eecce---E-Ec----CCCCEEEEEeCCCCcE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW------HIL-TSGVL---T-YT----NDARFQVIHTDGSDDW   73 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~------~~l-~~~~~---~-~~----~~~R~~~~~~~~~~~~   73 (113)
                      +++....+++.+|++|+|.|.++......|+||||..+      .+| +....   . +.    ..+||.+..+ ..+.+
T Consensus        12 v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~-~~~~~   90 (166)
T 3dmm_C           12 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD-TNNKY   90 (166)
T ss_dssp             EEEECSCBCCCTTCCEEEEEEEESSSCCEEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECS-TTTEE
T ss_pred             EEEeCCeEEEcCCCCEEEEEEEeCCCCceEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcC-CCCEE
Confidence            34556678899999999999998666779999999743      233 32211   1 11    3689998753 34459


Q ss_pred             EEEEccCCCCCCEEEEEeecCCC
Q psy14080         74 NLQIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      +|+|++++++|+|+|+|++...+
T Consensus        91 sL~I~~vq~eDsG~YyCa~~~~~  113 (166)
T 3dmm_C           91 VLTLNKFSKENEGYYFCSVISNS  113 (166)
T ss_dssp             EEEESSCCTTTCEEEEEEEESSS
T ss_pred             EEEECCCChhhCEEEEEEECCCC
Confidence            99999999999999999997544

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=99.72  E-value=5.8e-17  Score=102.86  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eE-EEec---ce-EEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HI-LTSG---VL-TYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~-l~~~---~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   .. +...   .. ...  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 3b9v_A            7 SGGGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSL   86 (120)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCC
Confidence            456889999999999999854  3578999999742   22 2221   11 111  24799998655567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (120)
T 3b9v_A           87 RAEDTAVYYCARWG  100 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999999954

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=99.72  E-value=6.6e-17  Score=111.87  Aligned_cols=98  Identities=10%  Similarity=-0.031  Sum_probs=71.4

Q ss_pred             EeecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCC---eEE-EecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDW---HIL-TSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~---~~l-~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++ ...+++.+|++|+|+|.+++ .....|.|||+..+   ..+ +..... ..++||.+..+..++.++|+|++++.+|
T Consensus         4 ~Q-p~~~~v~~G~~v~L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rf~~~~~~~~~~~sL~I~~~~~~D   81 (206)
T 1kgc_D            4 TQ-PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSN-VNNRMASLAIAEDRKSSTLILHRATLRD   81 (206)
T ss_dssp             EC-CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSS-EECSSEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EC-CCeEEEcCCCCEEEEEEEcCCCCCccEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEECCCCccc
Confidence            44 67789999999999999986 44468999999742   333 322111 1268999987677788999999999999


Q ss_pred             CEEEEEeecCC-----C--CeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY-----T--TTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~-----~--~~s~~~~L~V~g~  109 (113)
                      +|+|+|++...     .  .......|.|++.
T Consensus        82 sg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~  113 (206)
T 1kgc_D           82 AAVYYCILPLAGGTSYGKLTFGQGTILTVHPN  113 (206)
T ss_dssp             CEEEEEECCCCSTTCCCCCCCCCCEEEEEECC
T ss_pred             CccEEEEEecccCCCcccceECCCEEEEEeCC
Confidence            99999999642     1  2223457777654

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=99.72  E-value=2.8e-17  Score=106.43  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC------eEEEec-c---eE--Ec---CCCCEEE-EEeCCCCc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW------HILTSG-V---LT--YT---NDARFQV-IHTDGSDD   72 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~------~~l~~~-~---~~--~~---~~~R~~~-~~~~~~~~   72 (113)
                      .++....+++.+|++|+|.|.+++.....|+||||.++      ..|... .   ..  +.   .++||.+ ..  +++.
T Consensus         7 v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~--~~~~   84 (128)
T 1nez_G            7 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD--TNNK   84 (128)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE--TTTE
T ss_pred             eEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeC--CCCE
Confidence            45667778999999999999998765578999999742      333321 1   11  11   1479998 53  4457


Q ss_pred             EEEEEccCCCCCCEEEEEeecCC
Q psy14080         73 WNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ++|+|++++++|+|+|+|++...
T Consensus        85 ~~L~I~~~~~~Dsg~YyCa~~~~  107 (128)
T 1nez_G           85 YVLTLNKFSKENEGYYFCSVISN  107 (128)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCHHHCEEEEEEEcCC
Confidence            99999999999999999999643

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=99.72  E-value=6.3e-17  Score=102.17  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++..  ...|.|||+.+   +..+ ....    ...  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (117)
T 2yc1_A            7 SGGGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSL   86 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCC
Confidence            4468899999999999998542  56899999974   2222 2211    111  125799998766678899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (117)
T 2yc1_A           87 RAEDTAVYYCARGG  100 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEEe
Confidence            99999999999964

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=99.72  E-value=3.8e-17  Score=107.05  Aligned_cols=97  Identities=9%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec---ce-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ...   .. .+  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (139)
T 2d7t_H            7 SGAEVKKPGASVKVSCKASGYTFTGNYMHWVRQAPGQGLEYMGWINPKSGDTNYAQKFQGRVTMTRDTSISTVYMEVRRL   86 (139)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEEeCCcccCCEEEEEEECCCCCCEEEEEEEcCCCceeeCcccCCeEEEEEeCCCCEEEEEECcC
Confidence            445789999999999999853  346899999974   2333 221   11 11  125799998655567899999999


Q ss_pred             CCCCCEEEEEeecCCC--CeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYT--TTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~  109 (113)
                      +++|+|+|+|++....  .......|.|++.
T Consensus        87 ~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~  117 (139)
T 2d7t_H           87 RSDDTAVYYCATGWWGMDVWGQGTLVTVSSA  117 (139)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECC-
T ss_pred             CHHHCEEEEEEEeeCCcCEECCCEEEEEecc
Confidence            9999999999996532  2234557777654

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=99.72  E-value=2.6e-17  Score=103.66  Aligned_cols=82  Identities=11%  Similarity=0.035  Sum_probs=60.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-Eecc--eEE---cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TSGV--LTY---TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~~~--~~~---~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++.+..+++.+|++|+|+|.+++.+.+.|.|||+.++   ..| ....  ...   ..++||.+..+.  +. +|+|+++
T Consensus         5 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~--~~-~L~I~~~   81 (112)
T 1fo0_B            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT--DT-ELRLQVA   81 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE--TT-EEEEEEE
T ss_pred             EeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCC--CC-eEEEcCC
Confidence            4556678999999999999998766789999999742   233 2211  111   113799887532  34 9999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        82 ~~~Dsg~Y~C~~~~   95 (112)
T 1fo0_B           82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CHhHCEEEEEEEEc
Confidence            99999999999964

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.72  E-value=1.6e-17  Score=106.70  Aligned_cols=102  Identities=10%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEe---CCCCcEEEEEccCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHT---DGSDDWNLQIKFLQ   81 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~   81 (113)
                      ..++....+++.+|++|+|+|.+++. +.+.|.|||+.+.  .++.....  ...+||....+   .....++|+|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (127)
T 2jju_A            5 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNIT   82 (127)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSS--SCCTTEEEC-------CCBCCEEECSCC
T ss_pred             EEEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCC--CccCcEEeeEeeeecCCCEEEEEECCCC
Confidence            34555677899999999999999865 4578999998632  23332111  12357775321   23457899999999


Q ss_pred             CCCCEEEEEeecCCC-C------eeEEEEeceecccc
Q psy14080         82 KRDNGTYECQAQPYT-T------TSHSQNAPGLGDLL  111 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~-~------~s~~~~L~V~g~~~  111 (113)
                      ++|+|+|+|++.... .      ......|.|++...
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~~~  119 (127)
T 2jju_A           83 PADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS  119 (127)
T ss_dssp             GGGCEEEEEEEEECCSSSCEEEEECCCEEEEEEC---
T ss_pred             HHHCEEEEEEEEcCCCCccceEEeCCCeEEEEeecCC
Confidence            999999999995421 1      12346788887653

>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*

Probab=99.72  E-value=9.4e-17  Score=103.25  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec---ce-EE--cCCCCEEEEEeCCCCcEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG---VL-TY--TNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~   76 (113)
                      +++.+. +++.+|++|+|+|.+++.  ....+.||||.+   +..| ...   .. ..  ...+||.+..+..++.++|+
T Consensus         6 l~q~~~-~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~   84 (123)
T 3k1k_C            6 LVESGG-ALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQ   84 (123)
T ss_dssp             EEEECC-CEECTTCCEEEEEEEESSCTTTSCEEEEEECSSSCCEEEEEECSSSSCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEecCC-EEECCCCCEEEEEEeeCCcccccEEEEEEECCCCCCEEEEEEEcCCCceeeCccccccEEEEEeCCCCEEEEE
Confidence            445554 689999999999999864  356899999974   2333 321   11 11  12579999876667889999


Q ss_pred             EccCCCCCCEEEEEeecC
Q psy14080         77 IKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~   94 (113)
                      |.+++++|+|+|+|++.+
T Consensus        85 I~~~~~~Dsg~Y~Ca~~~  102 (123)
T 3k1k_C           85 MNSLKPEDTAVYYCNVNV  102 (123)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             ECCCChhhCEEEEEEEec
Confidence            999999999999999975

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.72  E-value=6.4e-17  Score=105.03  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccC---CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe--C--CCCcEEE
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT--D--GSDDWNL   75 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~--~--~~~~~~L   75 (113)
                      +.|..++....+++++.+|++|+|.|.+.+.   +.+.|.|||.. ...+..     ....|+.+...  .  ....++|
T Consensus         4 ~~~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L   77 (126)
T 2dav_A            4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGK-WMDLAS-----KAGKHLQLKETFERHSRVYTFEM   77 (126)
T ss_dssp             CCSSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESS-SCCHHH-----HTTSSEEEEEEEETTTTEEEEEE
T ss_pred             CCcccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCc-CcccCC-----CCCceEEEccccccccccceEEE
Confidence            4566777788899999999999999999864   68899999942 111100     01345554311  0  1125899


Q ss_pred             EEccCCCCCCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         76 QIKFLQKRDNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      +|++++.+|+|.|+|.+ +..+..+..++|.|+.
T Consensus        78 ~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           78 QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999 4567788999999987

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.72  E-value=5.5e-17  Score=102.40  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---Ce-EEEecc---eEEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WH-ILTSGV---LTYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~-~l~~~~---~~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++ +..+++.+|++|+|+|.++.. +...|.|||+.+   +. ++....   ....  ..+||.+..  .++.++|+|++
T Consensus         6 ~q-p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~   82 (115)
T 2otu_A            6 TQ-SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISN   82 (115)
T ss_dssp             EE-CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred             Ec-CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEc--cCCEEEEEECC
Confidence            44 677899999999999999875 567899999863   22 333221   1222  157999874  45689999999


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                      ++++|+|+|+|++..
T Consensus        83 ~~~~Dsg~Y~C~~~~   97 (115)
T 2otu_A           83 IQPEDEAIYICGVGD   97 (115)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CChhHCEEEEEEEec
Confidence            999999999999954

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.72  E-value=1.6e-17  Score=104.60  Aligned_cols=97  Identities=12%  Similarity=0.022  Sum_probs=69.3

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC------CeEEEecc-e-EEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD------WHILTSGV-L-TYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~------~~~l~~~~-~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ...+++.+|++|+|+|.++..  ....|.|||+..      ..++..+. . ....++||.+..+...++++|+|++++.
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   83 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVV   83 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCH
Confidence            345788999999999999753  346899999851      33443322 1 2335689987644455788999999999


Q ss_pred             CCCEEEEEeecCCC-CeeEEEEeceecc
Q psy14080         83 RDNGTYECQAQPYT-TTSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~-~~s~~~~L~V~g~  109 (113)
                      +|+|+|+|.+...+ .....+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (115)
T 2or7_A           84 GDGGPYCCVVEIPGAFHFVDYMLEVKPE  111 (115)
T ss_dssp             GGCEEEEEEECCTTSCEEEEEEEEEESC
T ss_pred             HHCEEEEEEEECCCceeEEEEEEEEcCC
Confidence            99999999997543 3367778887654

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=99.72  E-value=6.9e-17  Score=102.52  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEec---ce-EEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTSG---VL-TYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~~---~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++..  ...|.|||+.++   . ++...   .. ...  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 1n4x_H            7 SGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNL   86 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            4558999999999999998532  468999999742   2 22221   11 111  24799988655567899999999


Q ss_pred             CCCCCEEEEEeecCC
Q psy14080         81 QKRDNGTYECQAQPY   95 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~   95 (113)
                      +++|+|+|+|++...
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           87 KNEDTATYFCVRDRH  101 (120)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CHHHCEEEEEEEEcc
Confidence            999999999999653

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=99.72  E-value=8.9e-17  Score=105.07  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Ee--cc-eE-E--cCCCCEEEEEeCCCCcEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TS--GV-LT-Y--TNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~--~~-~~-~--~~~~R~~~~~~~~~~~~~L~   76 (113)
                      +++.+. +++.+|++|+|+|.++..  ....|.||||.+   +..| ..  .. .. .  ...+||.+..+...+.++|+
T Consensus         8 l~q~~~-~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~   86 (136)
T 3tpk_A            8 LVESGG-GSVQPGGSLRLSCTASGYTFSQEFVIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAKNTVYLQ   86 (136)
T ss_dssp             EEEECC-EEECTTCCEEEEEEEEESGGGCCEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEeeCC-EEEccCCCEEEEEEEcccccCCcEEEEEEECCCCCcEEEEEEECCCCcEEcCcccCCCEEEEEcCCCCEEEEE
Confidence            344443 789999999999999754  356899999974   2333 22  11 11 1  23589999876667789999


Q ss_pred             EccCCCCCCEEEEEeecCCC-------CeeEEEEeceeccc
Q psy14080         77 IKFLQKRDNGTYECQAQPYT-------TTSHSQNAPGLGDL  110 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~~-------~~s~~~~L~V~g~~  110 (113)
                      |++++++|+|+|+|++....       ..-....|.|+++.
T Consensus        87 I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~fG~GT~L~V~~~~  127 (136)
T 3tpk_A           87 MNNLKPEDTAMYYCAAAPTATHALYFDYWGQGTQVTVSSAS  127 (136)
T ss_dssp             ECSCCGGGCEEEEEEEESCSSCGGGCBCCCSCEEEEEC---
T ss_pred             ECCCChhhCEEEEEEEEeCCCCcccccEECCCEEEEEEcCC
Confidence            99999999999999996421       22344567776654

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=99.72  E-value=1.4e-17  Score=108.70  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=72.4

Q ss_pred             eecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCC---eEE-Ee---cc-eEEc--C-CCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDW---HIL-TS---GV-LTYT--N-DARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~---~~l-~~---~~-~~~~--~-~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +....+++.+|++|+|+|.++ +.....|.|||+..+   ..+ ..   +. ..+.  . .+||.+..  +++.++|+|+
T Consensus         4 q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~--~~~~~~L~I~   81 (137)
T 3bdb_A            4 KELHVKTVKRGENVTMECSMSKVTNKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV--NDQKFDLNII   81 (137)
T ss_dssp             CBCEECCCCTTCEECCCCBCTTCCCGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE--SSSBEEEEEE
T ss_pred             CCCCeEEEcCCCCEEEEeecCCCcCcceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEe--cCCEEEEEEC
Confidence            344567889999999999998 666678999999742   233 22   11 1121  1 58999874  4678999999


Q ss_pred             cCCCCCCEEEEEeecCCC--CeeEEEEeceeccc
Q psy14080         79 FLQKRDNGTYECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +++++|+|+|+|++....  .......|.|++..
T Consensus        82 ~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~  115 (137)
T 3bdb_A           82 GAREDDGGEYFCGEVEGIIIKFTSGTRLQFEGSN  115 (137)
T ss_dssp             SCCSTTCEEEEEEEECSSCEEEEEEEEECCCCCC
T ss_pred             CCCHHHCEEEEEEEccCCeEEECCCEEEEEECCC
Confidence            999999999999996543  34567789998765

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=99.71  E-value=9.1e-17  Score=102.47  Aligned_cols=81  Identities=16%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc----eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV----LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~----~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+++.  ....|.|||+.+   +..+ ....    ....  ..+||.+..+..++.++|+|++++
T Consensus        10 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   89 (123)
T 2p45_B           10 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLK   89 (123)
T ss_dssp             CCEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCC
T ss_pred             CCEEEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCC
Confidence            45789999999999999853  357899999973   2232 2211    1111  247999986555678999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        90 ~~Dsg~Y~C~~~~  102 (123)
T 2p45_B           90 PEDTATYYCAAGG  102 (123)
T ss_dssp             GGGCEEEEEEESS
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999965

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=99.71  E-value=3.3e-17  Score=105.35  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eecc---e-EE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSGV---L-TY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~~---~-~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+++.  ....|.|||+.++   ..+ ....   . ..  ...+||.+..+..++.++|+|++++
T Consensus         8 ~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (127)
T 1mqk_H            8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeCCCccCCcEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEECCCC
Confidence            46789999999999999853  2468999999742   223 2211   1 11  1247999986555678999999999


Q ss_pred             CCCCEEEEEeecCC--CC--eeEEEEeceeccc
Q psy14080         82 KRDNGTYECQAQPY--TT--TSHSQNAPGLGDL  110 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~--~~--~s~~~~L~V~g~~  110 (113)
                      ++|+|+|+|++...  ..  .-....|.|++..
T Consensus        88 ~~Dsg~Y~C~~~~~~~~~~~fg~gT~L~V~~~~  120 (127)
T 1mqk_H           88 SEDTAMYYCVRHEYYYAMDYWGQGTTVTVSSAW  120 (127)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSC
T ss_pred             HHHCEEEEEEEecCCcCcceECCCEEEEEeCCc
Confidence            99999999999643  11  1234577776654

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.71  E-value=3.1e-17  Score=101.27  Aligned_cols=94  Identities=19%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             ceEEEecCCcEEEEEEEccCCC---CEEEEEecCCC------eEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDW------HILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~------~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+++.+|++|+|+|.+...+.   ..|.|||+..+      .++..+..  .....+||.+..+...++++|+|++++.
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   81 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTL   81 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCG
T ss_pred             CCEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCC
Confidence            3578899999999999976532   45999998632      23322211  1234679887643345678999999999


Q ss_pred             CCCEEEEEeecCC-CCeeEEEEecee
Q psy14080         83 RDNGTYECQAQPY-TTTSHSQNAPGL  107 (113)
Q Consensus        83 ~D~G~Y~C~~~~~-~~~s~~~~L~V~  107 (113)
                      +|+|.|+|.+... ...+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           82 DDHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             GGCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             hhCeEEEEEEEcCCcccceEEEEEEE
Confidence            9999999999653 334455666654

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=99.71  E-value=2.2e-17  Score=103.62  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             ecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCC---eEEE-e---cce-EEc--C-CCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDW---HILT-S---GVL-TYT--N-DARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~---~~l~-~---~~~-~~~--~-~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .+..+++.+|++|+|+|.++ +.+.+.|.|||+.++   ..+. .   +.. .+.  . .+||.+..  +++.++|+|++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~   82 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV--NDQKFDLNIIG   82 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE--SSSBEEEEESS
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE--cCCeEEEEECC
Confidence            34567889999999999998 766678999998742   3332 1   111 111  1 68999874  46789999999


Q ss_pred             CCCCCCEEEEEeecCC
Q psy14080         80 LQKRDNGTYECQAQPY   95 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~   95 (113)
                      ++++|+|+|+|++...
T Consensus        83 ~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           83 TREDDGGEYFCGEVEG   98 (111)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CChhHCEEEEEEEccC
Confidence            9999999999999643

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.71  E-value=4.5e-17  Score=101.61  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             ecceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEe--cce--EEcC--CCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTS--GVL--TYTN--DARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~--~~~--~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ....+++.+|++|+|+|.+ .+.+.+.|.|||..+..++..  +..  ....  .+||.+.    .++++|+|++++.+|
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~D   84 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE----ENNGALHISNVRKED   84 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC----TTTCCEEESSCCGGG
T ss_pred             CCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe----CCCccEEECCCCccc
Confidence            3455889999999999998 555667999999323323322  111  1111  2588864    267899999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+......+..++|.|...
T Consensus        85 sG~Y~C~v~~~~~~~~~~~L~V~dp  109 (110)
T 2ptt_A           85 KGTYYMRVLRETENELKITLEVFDP  109 (110)
T ss_dssp             CEEEEEEEESSSBCCEEEEEEEECC
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEEcc
Confidence            9999999976555566889988753

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=99.71  E-value=9.7e-17  Score=102.07  Aligned_cols=82  Identities=15%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eE-EEec---ce-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HI-LTSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~-l~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++..  ...|.|||+.++   .. +...   .. ..  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (121)
T 1j05_H            7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            4567899999999999998542  568999999742   22 2221   11 11  124799988655567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (121)
T 1j05_H           87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999999954

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=99.71  E-value=7.2e-17  Score=103.66  Aligned_cols=83  Identities=19%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEE-Ee--------cce-EEc--CCCCEEEEEeCCCCcEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHIL-TS--------GVL-TYT--NDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l-~~--------~~~-~~~--~~~R~~~~~~~~~~~~~L   75 (113)
                      +..+++.+|++|+|+|.+++..  ...|.|||+.+   +..| ..        +.. ...  ..+||.+..+..++.++|
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L   86 (127)
T 1i3u_A            7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL   86 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred             CCCEEEeCCCcEEEEEEecCCCcCCcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcCCCCEEEE
Confidence            4468899999999999998542  57899999974   2332 22        111 111  247999986555678999


Q ss_pred             EEccCCCCCCEEEEEeecCC
Q psy14080         76 QIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +|++++++|+|+|+|++...
T Consensus        87 ~I~~~~~~Dsg~Y~C~~~~~  106 (127)
T 1i3u_A           87 QMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             EECSCCGGGCEEEEEEEESC
T ss_pred             EECCCChhhCEEEEEEEEcC
Confidence            99999999999999999653

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=99.71  E-value=7.7e-17  Score=103.81  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eecc---eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSGV---LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~~---~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   ..| ....   ....  ..+||.+..+..++.++|+|++++
T Consensus         7 p~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   86 (127)
T 1kxt_B            7 SGGGSVQAGGSLRLSCAASGYTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLK   86 (127)
T ss_dssp             ECCEECCTTCCEEEEEEEC--CCSSSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCC
T ss_pred             CCCEEEeCCCCEEEEeEecCCCccceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCC
Confidence            445789999999999999853  3568999999742   223 2221   1111  257999987656788999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        87 ~~Dsg~Y~C~~~~   99 (127)
T 1kxt_B           87 PEDTAVYYCAAGP   99 (127)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999965

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.71  E-value=2e-16  Score=96.91  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ....+++++.+|++|+|.|.+++. .+.|.|||.  +..+       ..++||.+..  +++..+|.|.+++.+|+|.|+
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~v~~~-~~~v~W~k~--g~~i-------~~~~~~~i~~--~g~~~~L~I~~v~~~D~G~Y~   76 (93)
T 1waa_A            9 EKPLYGVEVFVGETAHFEIELSEP-DVHGQWKLK--GQPL-------AASPDCEIIE--DGKKHILILHNCQLGMTGEVS   76 (93)
T ss_dssp             EECCCCEEEETTSCEEEEEEESSS-SCCCEEEET--TEEC-------CCBTTEEEEE--ETTEEEEEECSCCGGGCEEEE
T ss_pred             eccCcceEEeCCCCEEEEEEECCC-CCeEEEEEC--CEEC-------cCCCCEEEEE--ECCEEEEEECCCChhhCEEEE
Confidence            444567899999999999999864 478999984  3333       2356888764  345679999999999999999


Q ss_pred             EeecCCCCeeEEEEeceec
Q psy14080         90 CQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g  108 (113)
                      |.+..   ....+.|.|.+
T Consensus        77 C~a~n---~~~sa~L~V~~   92 (93)
T 1waa_A           77 FQAAN---TKSAANLKVKE   92 (93)
T ss_dssp             EEETT---EEEEEEEEEEC
T ss_pred             EEECC---CcEEEEEEEEc
Confidence            99854   34567888875

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.71  E-value=5.5e-17  Score=97.98  Aligned_cols=80  Identities=15%  Similarity=0.062  Sum_probs=63.0

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .++.+.+|+++.|.|.+++ +.+.|.|||.  +..|       ..++|+.+..  +++..+|.|.+++.+|+|.|.|.+.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~--g~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~   71 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKD--GERL-------ASQGRVQLEQ--AGARQVLRVQGARSGDAGEYLCDAP   71 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEET--TEEC-------CCCSSEEEEE--CSSCEEEEESSCSSTTCEEEEEECT
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEEC--CEEc-------cccccEEEee--cCCeEEEEecCCCCcccEEEEEEEC
Confidence            4688999999999999977 7788999983  3333       2467888763  3466799999999999999999874


Q ss_pred             CCCCeeEEEEeceec
Q psy14080         94 PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g  108 (113)
                      .   .+..+.|.|+.
T Consensus        72 n---~~~~a~l~V~e   83 (84)
T 2lu7_A           72 Q---DSRIFLVSVEE   83 (84)
T ss_dssp             T---TCEEEEEEECC
T ss_pred             C---EEEEEEEEEEC
Confidence            3   35567888864

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=99.71  E-value=7.6e-17  Score=102.83  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeE-EEec---ce-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHI-LTSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~-l~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +.. +...   .. ..  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (123)
T 2wzp_D            7 SGGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSL   86 (123)
T ss_dssp             EECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCC
Confidence            446889999999999999853  357899999873   222 2221   11 11  125799998665567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (123)
T 2wzp_D           87 KPEDTAIYYCAARS  100 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999954

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=99.71  E-value=8e-17  Score=111.91  Aligned_cols=101  Identities=10%  Similarity=0.057  Sum_probs=72.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCC---e-EEEecc-eE-EcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDW---H-ILTSGV-LT-YTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~---~-~l~~~~-~~-~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .++....+++.+|++|+|+|.+++.... .|.|||+..+   . +++... .. ...++||.+..+..++.++|+|++++
T Consensus         6 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   85 (211)
T 2ak4_D            6 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   85 (211)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccc
Confidence            3455667899999999999999865444 8999999742   2 333221 11 12368999987677888999999999


Q ss_pred             CCCCEEEEEeecCC---C--CeeEEEEeceecc
Q psy14080         82 KRDNGTYECQAQPY---T--TTSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~---~--~~s~~~~L~V~g~  109 (113)
                      .+|+|+|+|++...   .  .......|.|++.
T Consensus        86 ~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~  118 (211)
T 2ak4_D           86 VVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPN  118 (211)
T ss_dssp             GGGCEEEEEEEECSBTTSCCEECCCEEEEEECC
T ss_pred             cccCceEEEEEEcCCCcceeeECCCEEEEEeCc
Confidence            99999999999642   1  1223356777754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=8.1e-17  Score=99.69  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=69.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      .+....+++++.+|+++.|.|.+  .+.+.|.|||.  +..+       ..++|+.+..  ++...+|.|.+++.+|+|.
T Consensus         9 ~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~--g~~l-------~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~   75 (100)
T 2yuz_A            9 KILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKN--GLPV-------QESDRLKVVQ--KGRIHKLVIANALTEDEGD   75 (100)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEET--TEEC-------CCCSSEEEEE--CSSEEEEEESSCCGGGCSE
T ss_pred             EEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEEC--CEEC-------CCCCcEEEEE--eCCEEEEEECCCChhhCEE
Confidence            33445567899999999999999  67789999984  3333       2467888764  3456799999999999999


Q ss_pred             EEEeecCCCCeeEEEEeceecc
Q psy14080         88 YECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        88 Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.+... ..+..+.|.|.+.
T Consensus        76 Y~C~a~N~-~~~~~a~L~V~~~   96 (100)
T 2yuz_A           76 YVFAPDAY-NVTLPAKVHVISG   96 (100)
T ss_dssp             EEEEESSS-CCCEEEEEEEECC
T ss_pred             EEEEEcCC-CeeEEEEEEEeCC
Confidence            99999665 5677889988764

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=99.70  E-value=1e-16  Score=102.16  Aligned_cols=82  Identities=11%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---e-EEEe---cce-EEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---H-ILTS---GVL-TYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~-~l~~---~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.++   . ++..   +.. ...  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (122)
T 1xiw_D            7 SGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSL   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCcEEEEEEeeCcccCCCEEEEEEECCCCCcEEEEEEeccCCceeeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            445789999999999999853  3468999999742   2 2222   111 121  24799998665567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (122)
T 1xiw_D           87 TSEDSAVYYCARSG  100 (122)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999964

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=104.22  Aligned_cols=92  Identities=15%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEec-CC---CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRR-RD---WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~-~~---~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ++.+..+++.+|++|+|+|.++.. .+.|+|||+ .+   ...+..      .++||.+..  +++.++|+|.+++++|+
T Consensus        22 ~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~------~~~rf~~~~--~~~~~~L~I~~~~~~Ds   92 (134)
T 3kg5_A           22 WQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKL------EKGRMEESQ--NESLATLTIQGIRFEDN   92 (134)
T ss_dssp             EEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCC------CTTTEEEEE--CSSEEEEEECSCCTTTC
T ss_pred             EEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEE------ECCeEEEEc--cCCEEEEEECCCCcCcC
Confidence            455667899999999999999865 578999999 53   233321      367999873  45789999999999999


Q ss_pred             EEEEEeecCC--C--CeeEEEEeceeccc
Q psy14080         86 GTYECQAQPY--T--TTSHSQNAPGLGDL  110 (113)
Q Consensus        86 G~Y~C~~~~~--~--~~s~~~~L~V~g~~  110 (113)
                      |+|+|++...  .  .......|.|+|..
T Consensus        93 g~Y~C~~~~~~~~~~~fg~GT~L~V~~~p  121 (134)
T 3kg5_A           93 GIYFCQQKCNNTSEVYQGCGTELRVMGFS  121 (134)
T ss_dssp             EEEEEEEECTTTCCEEECCCEEEEEECC-
T ss_pred             EEEEEEEEcCCCCceEECCCEEEEEecCC
Confidence            9999999653  2  23455678887754

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=99.70  E-value=4.3e-17  Score=103.15  Aligned_cols=84  Identities=17%  Similarity=0.073  Sum_probs=61.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC-----eEE-Eecce--EEcC---CCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW-----HIL-TSGVL--TYTN---DARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~-----~~l-~~~~~--~~~~---~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.+..+++.+|++|+|+|.++.. +...|.|||+.++     ..| .....  ....   .+||.+..  .++.++|+|
T Consensus         4 ~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I   81 (114)
T 2hp4_A            4 RVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKR--LGDTFVLTL   81 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEE--ETTEEEEEE
T ss_pred             EeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEe--cCCEEEEEE
Confidence            455667889999999999999854 3578999998632     222 22211  1111   57998764  356799999


Q ss_pred             ccCCCCCCEEEEEeecCC
Q psy14080         78 KFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~   95 (113)
                      ++++++|+|+|+|++...
T Consensus        82 ~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEecC
Confidence            999999999999999653

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.70  E-value=9.7e-17  Score=103.16  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCC---CCEEEEEecCCC-e-EEEe-cceEEc-----CCCCEEEEEe-CCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDW-H-ILTS-GVLTYT-----NDARFQVIHT-DGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~-~-~l~~-~~~~~~-----~~~R~~~~~~-~~~~~~~L~I~~   79 (113)
                      ....+.+.+|++|+|+|.++...   ...|.|||.... . .+.. +.....     -.+|+.+..+ ...++++|+|++
T Consensus        11 ~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~   90 (125)
T 4gos_A           11 TTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKN   90 (125)
T ss_dssp             EEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESS
T ss_pred             cCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECC
Confidence            34457888999999999997433   347999997642 2 2222 211111     1357776532 124578999999


Q ss_pred             CCCCCCEEEEEeecC-CCCeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQP-YTTTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g  108 (113)
                      |+++|+|.|+|.+.+ ....+..+.|+|=.
T Consensus        91 v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG~  120 (125)
T 4gos_A           91 VQLTDAGTYKCYIITSKGKGNANLEYKTGH  120 (125)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CChHHCEEEEEEEEeCCCeEEEEEEEEECC
Confidence            999999999999954 45667888888743

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=99.70  E-value=1.1e-16  Score=102.88  Aligned_cols=82  Identities=12%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             cceEEEecCCcEEEEEEEccCC--C-CEEEEEecCCC---eEE-Eec---ceEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--K-VRVSWVRRRDW---HIL-TSG---VLTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~-~~V~W~k~~~~---~~l-~~~---~~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++..  . ..|.|||+.++   ..| ...   .....  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~   86 (127)
T 3cx5_J            7 SGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSV   86 (127)
T ss_dssp             EECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCC
Confidence            3456799999999999998643  2 68999999742   223 221   11221  24799988766678899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (127)
T 3cx5_J           87 TTEDTATYYCARSE  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEEe
Confidence            99999999999964

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=99.70  E-value=1.5e-16  Score=100.70  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             eEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Ee-cc---eEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TS-GV---LTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~-~~---~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+|++|+|+|.++..  ....++|||+.++   ..| .. ..   ...  ...+||.+..+...+.++|+|+++++
T Consensus         7 ~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   86 (115)
T 3k74_B            7 GGLVQPGGSLRLSCAASGFTFNNYWMYWVRRAPGKGLEWVSMINPGGIITKYAESVKGRFTISRDNAKNTLYLQMNSLTS   86 (115)
T ss_dssp             CCEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEECCCCcEEEEEEEeCccccCCEEEEEEECCCCCeEEEEEEECCCCceeecccccccEEEEEcCCCCEEEEEECCCCh
Confidence            4688999999999999864  2468999999742   233 22 11   111  13579999876667789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        87 ~Dsg~Y~C~~~~   98 (115)
T 3k74_B           87 EDTAVYYCAKDW   98 (115)
T ss_dssp             GGCEEEEEEEST
T ss_pred             HhCEEEEEEEEc
Confidence            999999999965

>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.70  E-value=2.1e-16  Score=105.02  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNL   75 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L   75 (113)
                      .+++.+..+++.+|++|+|+|.++..  ....|+||||.+   +..| ...   . ..+  ...+||.+..+...+.++|
T Consensus         5 ~l~qqp~~v~v~~G~sVtL~C~~s~~~~~~~~v~WyrQ~~g~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL   84 (149)
T 3u6r_H            5 QLLEQSGAEVKKPGSSVKVSCQVFGDTFSRYTIQWLRQAPGQGPEWMGNIIPVYNTPNYAQKFQGRLSITADDSTSTAYM   84 (149)
T ss_dssp             EEEEECCCEEECTTCCEEEEEEEEESCCCTTTEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EEEecCCCEEEcCCCCEEEEeEeeCCCcCCceEEEEEECCCCCCEEEEEEecCCCccccCcccCCCEEEEecCCCCEEEE
Confidence            34434567899999999999999763  356799999974   2333 221   1 112  1257999987666788999


Q ss_pred             EEccCCCCCCEEEEEeecC
Q psy14080         76 QIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +|++++++|+|+|+|++..
T Consensus        85 ~I~~lq~~Dsg~Y~Ca~~~  103 (149)
T 3u6r_H           85 ELSSLRSEDTAVYFCARVV  103 (149)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             EECCCChhhCEEEEEEEec
Confidence            9999999999999999965

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.70  E-value=1.7e-16  Score=112.24  Aligned_cols=99  Identities=15%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC----eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW----HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~----~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .++.+..+++.+|++|+|+|.++.. ...|.||||.++    .+++..... ...+||.+..+..++.++|+|++++++|
T Consensus         4 V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sLtI~~lq~~D   81 (229)
T 3mbe_C            4 VEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGT-KENGRLKSTFNSKERYSTLHIKDAQLED   81 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEE-EEETTEEEEEETTTTEEEEEECSCCSTT
T ss_pred             EEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCC-ccCCCEEEEECCCCCEEEEEEECCcccC
Confidence            3555677899999999999999877 678999999732    233332222 3468999986677889999999999999


Q ss_pred             CEEEEEeecCC---C--CeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY---T--TTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~---~--~~s~~~~L~V~g~  109 (113)
                      +|+|+|++...   .  .......|.|.+.
T Consensus        82 SG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~  111 (229)
T 3mbe_C           82 SGTYFCAAEDGGSGNKLIFGTGTLLSVKPN  111 (229)
T ss_dssp             CBEEEEEEECSSSTTCEEECCCCEEEEECC
T ss_pred             CCCEEEEEEeCCCcccceeCCCEEEEEecc
Confidence            99999999642   1  1223346666653

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=99.53  E-value=1.2e-18  Score=109.40  Aligned_cols=84  Identities=17%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+..+++.+|++|+|+|.+++.+.+.|.|||+..+   . ++..... ....++||.+..+...+.++|+|++++++|+
T Consensus         4 Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   83 (110)
T 1u3h_A            4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
Confidence            445678899999999999998777788999998632   2 2222211 1234679988754456789999999999999


Q ss_pred             EEEEEeecC
Q psy14080         86 GTYECQAQP   94 (113)
Q Consensus        86 G~Y~C~~~~   94 (113)
                      |+|+|++..
T Consensus        84 G~Y~C~~~~   92 (110)
T 1u3h_A           84 ATYFCAASA   92 (110)
Confidence            999999964

>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1

Probab=99.70  E-value=1.4e-16  Score=104.87  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Ee--cc-eEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TS--GV-LTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~--~~-~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ++.+ .+++.+|++|+|+|.++..  ....+.||||.++   ..| ..  +. ....  ..+||.+..+..++.++|+|+
T Consensus         7 ~Qs~-~v~v~~G~sVtL~C~~s~~~~~~~~v~WyrQ~~g~~p~~L~~~~~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~   85 (139)
T 3g9a_B            7 QESG-GGSVQAGGSLRLSCAASGDTFSSYSMAWFRQAPGKECELVSNILRDGTTTYAGSVKGRFTISRDDAKNTVYLQMV   85 (139)
T ss_dssp             EEES-CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCC-CEEEecCCCEEEEEEEcCCccCCcEEEEEEECCCCCcEEEEEEECCCCEEcCCccCCCEEEEECCCCCEEEEEEC
Confidence            4444 4789999999999999864  3568999999742   333 22  11 1111  257999987666789999999


Q ss_pred             cCCCCCCEEEEEeecCCC
Q psy14080         79 FLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~   96 (113)
                      +++++|+|+|+|++...+
T Consensus        86 ~lq~~DSG~YyCav~~~~  103 (139)
T 3g9a_B           86 NLKSEDTARYYCAADSGT  103 (139)
T ss_dssp             SCCGGGCEEEC-CEESSC
T ss_pred             CCCHHHCEEEEEEEEeCC
Confidence            999999999999997654

>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}

Probab=99.70  E-value=5.3e-17  Score=105.29  Aligned_cols=80  Identities=20%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             eEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Ee-cc--eEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TS-GV--LTY--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~-~~--~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+++.+|++|+|+|.+++.  ....+.||||.+   +..| .. +.  ...  ...+||.+..+..++.++|+|++++++
T Consensus         9 ~v~v~~G~~VtL~C~~s~~~~~~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~   88 (127)
T 3k81_A            9 GGLAQAGGSLRLSCVVSGITFASEAWGWYRRAPGKQRELIAAINNEGRTNYVDSVKGRFTVSRDNAKNVMYLQMNSLKPE   88 (127)
T ss_dssp             CCBCCBTCEEEEEEBCSCCCCSSSCEEEEEECSSSCEEEEEEECSSCCEEECTTTTTTCEEEEETTTTEEEEEEESBCTT
T ss_pred             CEEEccCCCEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEECCCceEcCCcccCCEEEEEcCCCCEEEEEECCCChh
Confidence            5788999999999999764  356899999974   2333 32 11  111  135799998766678899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|++.+
T Consensus        89 Dsg~Y~Ca~~~   99 (127)
T 3k81_A           89 DTAVYYCNANL   99 (127)
T ss_dssp             TCEEEEEECCC
T ss_pred             hCEEEEEEEee
Confidence            99999999965

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.70  E-value=8.7e-17  Score=112.27  Aligned_cols=101  Identities=15%  Similarity=0.040  Sum_probs=72.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---Ce-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WH-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .++.+..+++.+|++|+|+|.++......++||||.+   .. ++..........+||.+..+..++.++|+|++++++|
T Consensus         5 V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~D   84 (208)
T 4ei6_A            5 VQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSD   84 (208)
T ss_dssp             EEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGG
T ss_pred             EEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccC
Confidence            3455667899999999999999976656899999973   23 3332222112468999886677788999999999999


Q ss_pred             CEEEEEeecCC------CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY------TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~------~~~s~~~~L~V~g~  109 (113)
                      +|+|+|++...      ...-....|.|++.
T Consensus        85 sG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~  115 (208)
T 4ei6_A           85 SALYFCAASEQNNYAQGLTFGLGTRVSVFPY  115 (208)
T ss_dssp             CEEEEEEEEECCSSCCCCEECCCEEEEEECC
T ss_pred             CCcEEEEEecCCCccccccCCCCEEEEEeCc
Confidence            99999999531      12234456777654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=3.1e-16  Score=107.73  Aligned_cols=98  Identities=15%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEEcCCCCEEEEEe-CCCCcEEEEEccCCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTYTNDARFQVIHT-DGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D~   85 (113)
                      ++.+..+++.+|++|+|+|.+.... +.|.|||+..   ...+.........++||.+..+ ...+.++|+|++++.+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            4556778999999999999998654 4799999863   2333322111224689998764 446789999999999999


Q ss_pred             EEEEEeecCCC------------CeeEEEEeceec
Q psy14080         86 GTYECQAQPYT------------TTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~~~~~------------~~s~~~~L~V~g  108 (113)
                      |+|+|++....            .....+.|.|.+
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~  118 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP  118 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEEC
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEcc
Confidence            99999996431            122346788875

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=96.38  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ....+++.+|++++|.|.+.+.+.+.|.|+|.  +..+.       .+.++.... ...+.++|.|.+++.+|
T Consensus         5 ~P~~~~-~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--g~~~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~D   73 (100)
T 2kdg_A            5 PPRFIQ-VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN--GRTVQ-------SDDLHKMIV-SEKGLHSLIFEVVRASD   73 (100)
T ss_dssp             EEECCC-CCCCEEEETTCCEEEEEECEEESCCEEEEEET--TEEEC-------CCSSSCEEE-ETTTEEEEEESSCCGGG
T ss_pred             CCeEEe-CCCCEEecCCCEEEEEEEEEeeCCCEEEEEEC--CEECc-------CCCcEEEEE-cCCCeEEEEECCCCccc
Confidence            444433 45678999999999999999888899999984  33332       222222222 13355799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..+..+..+.|.|.+.
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           74 AGAYACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEcCCCeEEEEEEEEEEec
Confidence            99999999 45677888999999864

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=99.69  E-value=1.4e-16  Score=100.60  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eec---ceEEc--CCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSG---VLTYT--NDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~---~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+++.+|++|+|+|.+++.  ....|.|||+.+   +..+ ...   .....  ..+||.+..+...+.++|+|+++++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   87 (116)
T 1a2y_B            8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCH
Confidence            44789999999999999854  347899999973   2333 221   11121  1469998865556789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        88 ~Dsg~Y~C~~~~   99 (116)
T 1a2y_B           88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             HHCEEEEEEEec
Confidence            999999999964

>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1

Probab=99.69  E-value=1.1e-16  Score=101.19  Aligned_cols=81  Identities=15%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC---CEEEEEecCCCe------EEE-ec-ceEEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDWH------ILT-SG-VLTYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~~------~l~-~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .+..+++.+|++|+|+|.++....   ..|.|||+..+.      ... .. ...+..+-+|....  +.+.++|+|+++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~   82 (117)
T 1dqt_A            5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTF--NESRVNLTIQGL   82 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEE--ETTEEEEEECSC
T ss_pred             CCceEEEeCCCeEEEEEEeeCCCCCCccEEEEEecCCCCCcEEEEEEEecCccceEeccEEEeccc--CCCEEEEEEeCC
Confidence            345678899999999999984433   389999998543      111 11 11222222345443  345789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        83 ~~~Dsg~Y~C~~~~   96 (117)
T 1dqt_A           83 RAVDTGLYLCKVEL   96 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccCEEEEEEEee
Confidence            99999999999953

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.69  E-value=1.7e-16  Score=110.21  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-Eecc-eEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGV-LTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.++......++||||.+   ...| +... ......+||.+..+..++.++|+|++++++|
T Consensus         4 tQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~D   83 (200)
T 3rgv_A            4 TQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEID   83 (200)
T ss_dssp             ECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTT
T ss_pred             EECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCcc
Confidence            455667899999999999999976667899999963   2333 2221 1112358999886667788999999999999


Q ss_pred             CEEEEEeecCC--CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY--TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~--~~~s~~~~L~V~g~  109 (113)
                      +|+|+|++...  ...-....|.|.+.
T Consensus        84 sG~Y~Ca~~~~~~~~fG~GT~L~V~~~  110 (200)
T 3rgv_A           84 SAVYYCAANSGTYQRFGTGTKLQVVPN  110 (200)
T ss_dssp             CEEEEEEEESSSCCCCCCCEEEEEECC
T ss_pred             CCCEEEEeccCcccccCcCEEEEEeCC
Confidence            99999999532  12233456666654

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=99.69  E-value=7.5e-17  Score=103.78  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc----eEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV----LTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~----~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ....    ....  ..+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (127)
T 2x1q_A            7 SGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSL   86 (127)
T ss_dssp             ECCEEECTTCCEEEEEC------CCSEEEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCcEEEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEEEEEEcCC
Confidence            345789999999999999753  357899999974   2233 2211    1111  24799998655567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (127)
T 2x1q_A           87 EPEDTAVYYCAASS  100 (127)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHHHCEEEEEEEEe
Confidence            99999999999964

>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H

Probab=99.69  E-value=4.9e-16  Score=103.47  Aligned_cols=81  Identities=15%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeE-EEecc----eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHI-LTSGV----LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~-l~~~~----~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+++.  ....|.||||.+   ... +....    ....  ..+||.+..+..++.++|+|++++
T Consensus         8 ~~~~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~   87 (153)
T 2vyr_E            8 GGGLVQPGGSLRLSCAASGFTFEEYAMLWVRQAPGKGLEWVSGINARGYTTYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (153)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGCCEEEEEECTTSCCEEEEEECTTSCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCCEEEEEEEeCCccCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCC
Confidence            36899999999999999854  246799999974   233 33221    1121  257999987666789999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        88 ~~Dsg~Y~C~~~~  100 (153)
T 2vyr_E           88 TEDTAVYYCAKPW  100 (153)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999964

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.69  E-value=1.5e-16  Score=101.09  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEe-cc--eEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTS-GV--LTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~-~~--~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.|.+  ..++++.+|++|+|+|.+...  ....|.|+|++. .+... ..  ....  -.+|+.+.     .+++|+|
T Consensus         4 ~~~v~~--~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~-~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I   75 (117)
T 3q0h_A            4 TGTIET--TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQ-LLAICNADLGWHISPSFKDRVAPG-----PGLGLTL   75 (117)
T ss_dssp             SCEEEE--SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTE-EEEEEETTTEEECCGGGTTTEEEC-----STTCEEE
T ss_pred             eEEEEc--cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCE-EEEEEECCCCceeCccccCcEEeC-----CceEEEE
Confidence            444444  345899999999999999873  335799999753 33222 11  1111  14688753     3679999


Q ss_pred             ccCCCCCCEEEEEeecC--CCCeeEEEEeceecc
Q psy14080         78 KFLQKRDNGTYECQAQP--YTTTSHSQNAPGLGD  109 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~--~~~~s~~~~L~V~g~  109 (113)
                      ++++.+|+|.|+|.+.+  .+..+..+.|.|++.
T Consensus        76 ~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~p  109 (117)
T 3q0h_A           76 QSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES  109 (117)
T ss_dssp             CSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC
T ss_pred             eeCChhhCEEEEEEEEECCCCCeEEEEEEEEEcc
Confidence            99999999999999854  456778899999874

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=99.69  E-value=5.4e-16  Score=102.55  Aligned_cols=82  Identities=13%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|+|||+.+   +..| ....    ...  ...+||.+..+..++.++|+|+++
T Consensus         7 p~~~~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~   86 (148)
T 1jtp_A            7 SGGGSVQAGGSLRLSCAASGYTIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSL   86 (148)
T ss_dssp             ECCEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSC
T ss_pred             cCCEEEecCCCEEEEEEEeCccCCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcC
Confidence            446889999999999999853  357899999974   2333 2211    111  125799998766678899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|++..
T Consensus        87 ~~~Dsg~Y~C~~~~  100 (148)
T 1jtp_A           87 EPEDTAIYYCAADS  100 (148)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ChhHCEEEEEEEEc
Confidence            99999999999964

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=99.69  E-value=5.1e-17  Score=111.50  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=72.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++....+++.+|++|+|+|.+++.....|.|||+.++   . +++.... ....++||.+..+..++.++|+|++++.+
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   83 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             cEecCCEEEEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcc
Confidence            34556778999999999999998776678999999742   3 3332211 11236899987555567899999999999


Q ss_pred             CCEEEEEeecC----CCC--eeEEEEeceecc
Q psy14080         84 DNGTYECQAQP----YTT--TSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~----~~~--~s~~~~L~V~g~  109 (113)
                      |+|+|+|++..    ...  ......|.|++.
T Consensus        84 Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~  115 (194)
T 1lp9_E           84 DSALYYCALFLASSSFSKLVFGQGTSLSVVPN  115 (194)
T ss_dssp             GCEEEEEEEEECSSSSCEEEECCCEEEEEECC
T ss_pred             cCeeEEEEEecccCCcceeeeccCceEEecCc
Confidence            99999999964    121  113457777654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=98.40  Aligned_cols=100  Identities=17%  Similarity=0.234  Sum_probs=67.3

Q ss_pred             EeecceEEEecCCcEEEEEEEc-cCCCC----EEEEEecCCC--eEEEe-cc-eEEcCCCCEEEEEeC-CC--CcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVR-DIVKV----RVSWVRRRDW--HILTS-GV-LTYTNDARFQVIHTD-GS--DDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~-~~~~~----~V~W~k~~~~--~~l~~-~~-~~~~~~~R~~~~~~~-~~--~~~~L~I   77 (113)
                      ......+++.+|++|+|+|.+. ..+.+    .|.|||+...  ..++. +. ..+...+|+.+..+. ..  ++++|+|
T Consensus         4 v~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (118)
T 3udw_C            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (118)
T ss_dssp             EECCSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEE
T ss_pred             EeCCCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEE
Confidence            3445558899999999999995 33332    4999998532  12222 11 122336687765221 11  2789999


Q ss_pred             ccCCCCCCEEEEEeecC--CCCeeEEEEeceecc
Q psy14080         78 KFLQKRDNGTYECQAQP--YTTTSHSQNAPGLGD  109 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~--~~~~s~~~~L~V~g~  109 (113)
                      .+++.+|+|.|+|.+..  .+..+..+.|.|++.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~  117 (118)
T 3udw_C           84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK  117 (118)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             eecChHHCeEEEEEEEECCCCCccceEEEEEEeC
Confidence            99999999999999954  346678889988753

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=2e-16  Score=97.48  Aligned_cols=92  Identities=14%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCC--CEEEEEeCCCCcEEEEEccC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA--RFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~--R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +.|+..+....+++++.+|++++|.|.+.+ +.+.|.|||.  +..+.       .+.  ||.+..  +....+|.|.++
T Consensus         4 g~~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~--g~~l~-------~~~~~~~~~~~--~~~~~~L~I~~~   71 (103)
T 1x44_A            4 GSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKN--GEEII-------PGPKSRYRIRV--EGKKHILIIEGA   71 (103)
T ss_dssp             CCSSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEET--TEECC-------CSTTCSEEEEE--ETTEEEEEEEEE
T ss_pred             CCCCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEEC--CEECC-------CCCceEEEEEE--cCCEEEEEECCC
Confidence            345554555566789999999999999987 5689999984  33322       233  778764  235679999999


Q ss_pred             CCCCCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+..   .+..+.|.|.+.
T Consensus        72 ~~~D~G~Y~C~a~n---~~~~~~l~V~~~   97 (103)
T 1x44_A           72 TKADAAEYSVMTTG---GQSSAKLSVDLK   97 (103)
T ss_dssp             CTTTCSEEEEEETT---EEEEEEEEEECC
T ss_pred             CcccCEEEEEEECC---CcEEEEEEEeCC
Confidence            99999999999965   567788888764

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=99.69  E-value=1.8e-16  Score=110.56  Aligned_cols=99  Identities=15%  Similarity=0.047  Sum_probs=70.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEecc-eEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSGV-LTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~~-~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+. .....|.|||+..+   . +++... .....++||.+..+..++.++|+|++++.+|
T Consensus         5 ~Q~p~~v~v~~G~~vtL~C~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~D   83 (215)
T 1oga_D            5 EQSPQFLSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   83 (215)
T ss_dssp             EEECSEEEEETTCCEEEEEECS-SCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EECCCEEEEecCCCEEEEEEEc-CCCceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCccc
Confidence            4556678999999999999994 34568999999742   2 333321 1112368999987667788999999999999


Q ss_pred             CEEEEEeecCC-C--CeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY-T--TTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~-~--~~s~~~~L~V~g~  109 (113)
                      +|+|+|++... .  .......|.|+..
T Consensus        84 sg~Y~C~~~~~~~~~~fg~gt~L~V~~~  111 (215)
T 1oga_D           84 TGLYLCAGAGSQGNLIFGKGTKLSVKPN  111 (215)
T ss_dssp             CEEEEEEEECTTSSEEECCCEEEEEECC
T ss_pred             CceEEEEEecccccceeCCCEEEEEecc
Confidence            99999999642 1  1122346666543

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.69  E-value=3.5e-16  Score=100.12  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=69.1

Q ss_pred             EeecceEEEecCCcEEEEEEEcc---CCCCEEEEEecCCC---eEEEecce-------------E---EcC--CCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRD---IVKVRVSWVRRRDW---HILTSGVL-------------T---YTN--DARFQVI   65 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~---~~~~~V~W~k~~~~---~~l~~~~~-------------~---~~~--~~R~~~~   65 (113)
                      ++....+++.+|++|+|+|.+..   .+.+.|.|||+...   .++.....             .   ...  .+|+.+.
T Consensus         8 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~   87 (135)
T 1xt5_A            8 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA   87 (135)
T ss_dssp             ECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEES
T ss_pred             eCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEe
Confidence            44556789999999999999863   45678999998743   23332100             0   011  2788864


Q ss_pred             EeCCCCcEEEEEccCCCCCCEEEEEeecCC------CCeeEEEEeceecc
Q psy14080         66 HTDGSDDWNLQIKFLQKRDNGTYECQAQPY------TTTSHSQNAPGLGD  109 (113)
Q Consensus        66 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~------~~~s~~~~L~V~g~  109 (113)
                      .   .++++|+|++++.+|+|.|+|.+...      ......+.|.|.|.
T Consensus        88 ~---~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g~  134 (135)
T 1xt5_A           88 N---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  134 (135)
T ss_dssp             C---TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEETT
T ss_pred             c---CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEecC
Confidence            2   35689999999999999999999642      23348899999874

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=99.68  E-value=6.4e-17  Score=101.83  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc---eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV---LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~---~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+.+   +..| ....   ....  ..+||.+..+..++.++|+|++++
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   86 (114)
T 1sjv_A            7 SGGGLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLE   86 (114)
T ss_dssp             -CCCCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCC
T ss_pred             CCCEEEcCCCCEEEEEEEcCccccCCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            346788999999999999753  356899999973   2333 2221   1121  257999986556778999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        87 ~~DsG~Y~C~~~~   99 (114)
T 1sjv_A           87 PEDTAVYYCYTHY   99 (114)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             HHHCEEEEEeEEc
Confidence            9999999999965

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.68  E-value=4.8e-16  Score=94.70  Aligned_cols=89  Identities=15%  Similarity=0.091  Sum_probs=67.2

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .|+.+.......+++.+|++++|.|.+. +.+.+.+.|||......          ..+....      +.+|.|.+++.
T Consensus         8 ~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~----------~~~~~~~------~~~L~i~~v~~   71 (98)
T 1gl4_B            8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL----------PSRAMDF------NGILTIRNVQP   71 (98)
T ss_dssp             -CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC----------CTTEEEE------TTEEEECSCCG
T ss_pred             CCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC----------CceeecC------CCEEEEeCCCh
Confidence            3566666777888999999999999998 67888999999642211          1222211      34899999999


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|+|.+. ..+..+..+.|.|.+
T Consensus        72 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (98)
T 1gl4_B           72 SDAGTYVCTGSNMFAMDQGTATLHVQV   98 (98)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             hhCEEEEEEecCCCCccccEEEEEEeC
Confidence            99999999994 557778888888864

>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A

Probab=99.68  E-value=2.5e-16  Score=104.04  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Ee--cc-eE-E--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TS--GV-LT-Y--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~--~~-~~-~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .+..+++.+|++|+|+|.+++.  ....+.||||.+   +..| ..  .. .. .  ...+||.+..+...+.++|+|++
T Consensus         6 q~~~~~v~~G~svtL~C~~s~~~~~~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~   85 (143)
T 3r0m_A            6 ESGGGLVQAGGSLRLSCTASGRISSSYDMGWFRQAPGKEREFVAAISWSGGTTDYADSVKGRFAISKDNAKNAVYLQMNS   85 (143)
T ss_dssp             EECCEEEETTCCEEEEEEESSCCCTTEEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTSEEEEEEGGGTEEEEEECS
T ss_pred             eCCcEEEccCCCEEEEEEeeCCCcCCcEEEEEEECCCCCCEEEEEEEcCCCcEecCcccCCCEEEEEcCCCCEEEEEECC
Confidence            3446789999999999999864  356899999974   2333 22  11 11 1  13589999876556789999999


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                      ++++|+|+|+|++.+
T Consensus        86 lq~~Dsg~Y~Ca~~~  100 (143)
T 3r0m_A           86 LKPEDTAVYYCAAKW  100 (143)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CChhhCEEEEEEEEe
Confidence            999999999999964

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.68  E-value=2.5e-16  Score=108.69  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             ceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc----eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV----LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~----~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ....    ....  .++||.+..+...++++|+|++++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            568899999999999998754  478999998632   222 2211    1111  247999886655678999999999


Q ss_pred             CCCCEEEEEeecCCC-------CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT-------TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~-------~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|++...+       .....+.|.|.+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEcc
Confidence            999999999996542       122345777764

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.68  E-value=1.4e-16  Score=99.68  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=68.3

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC----CEEEEEecCCC-----eE-EE-ecceEE-----cCCCCEEEEEe-CCCCcEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK----VRVSWVRRRDW-----HI-LT-SGVLTY-----TNDARFQVIHT-DGSDDWN   74 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~----~~V~W~k~~~~-----~~-l~-~~~~~~-----~~~~R~~~~~~-~~~~~~~   74 (113)
                      ....+++.+|++|+|+|.+...+.    ..|.|+|+...     .. +. .+....     ...+|+.+..+ ...++++
T Consensus        11 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~s   90 (126)
T 1eaj_A           11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS   90 (126)
T ss_dssp             SEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCC
T ss_pred             CCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEE
Confidence            345688999999999999986543    46999998632     22 22 222221     12468887532 2345689


Q ss_pred             EEEccCCCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080         75 LQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLG  108 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g  108 (113)
                      |+|++++.+|+|.|+|.+... ...+..++|.|..
T Consensus        91 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            999999999999999999644 4557788888864

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=3.9e-16  Score=97.19  Aligned_cols=91  Identities=9%  Similarity=0.041  Sum_probs=68.3

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCC-CCEEEEEeCCCCcEEEEEccCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTND-ARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~-~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..|+.++......+++.+|++++|.|.+ ..+.+.|.|||..  ..+.       .+ .||.+..  +++..+|.|.+++
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g--~~l~-------~~~~~~~~~~--~~~~~~L~I~~v~   80 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNG--QEIQ-------MSGSKYIFES--IGAKRTLTISQCS   80 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESS--SEEC-------CCSSSSEEEE--ETTEEEEEECSCS
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECC--EECC-------CCCCeEEEEe--cCCEEEEEECCCC
Confidence            4566677777777899999999999999 4677789999843  2332       23 6888763  2346799999999


Q ss_pred             CCCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+.   ..+..+.|.|.+
T Consensus        81 ~~D~G~Y~C~a~---~~~~~~~l~V~e  104 (104)
T 1pd6_A           81 LADDAAYQCVVG---GEKCSTELFVKE  104 (104)
T ss_dssp             SSSCEEEEEEET---TEEECCEEEEEC
T ss_pred             cccCEEEEEEEC---CCcEEEEEEEeC
Confidence            999999999993   244556777753

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.68  E-value=9.7e-17  Score=101.49  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEe---CCCCcEEEEEccCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHT---DGSDDWNLQIKFLQKR   83 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~   83 (113)
                      ++....+++.+|++|+|+|.+.+. +.+.|.|||+.+.  .++.....  ...+|+....+   ..++.++|+|++++++
T Consensus        11 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   88 (120)
T 2yz1_A           11 TQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTG--EHFPRVTNVSDATKRNNMDFSIRISNVTPE   88 (120)
T ss_dssp             ECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECE--ECTTTCCSEEECCBSSTTBCCEEECSCCGG
T ss_pred             ECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCC--cccCcccceeeccccCCCeEEEEECCCCHH
Confidence            344567899999999999999865 4578999998632  23332111  12356654322   2355689999999999


Q ss_pred             CCEEEEEeecCC
Q psy14080         84 DNGTYECQAQPY   95 (113)
Q Consensus        84 D~G~Y~C~~~~~   95 (113)
                      |+|+|+|++...
T Consensus        89 DsG~Y~C~~~~~  100 (120)
T 2yz1_A           89 DAGTYYCVKFQK  100 (120)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             HCEEEEEEEEcC
Confidence            999999999643

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=9.6e-17  Score=103.77  Aligned_cols=99  Identities=10%  Similarity=0.085  Sum_probs=67.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEe---CCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHT---DGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~   82 (113)
                      .++....+++.+|++|+|+|.+.+. +.+.|.|||+.+.  .++.....  ...+||....+   .+...++|+|.+++.
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   88 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITP   88 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSS--CCCSSBCCSSCSSSSSCCBCCEEESSCCT
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCC--CcccceeeeeeeccCCCCEEEEEECCCCH
Confidence            3445567899999999999999865 4568999998632  23332111  11257664321   123478999999999


Q ss_pred             CCCEEEEEeecCCC---Cee----EEEEeceecc
Q psy14080         83 RDNGTYECQAQPYT---TTS----HSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~---~~s----~~~~L~V~g~  109 (113)
                      +|+|+|+|++....   ...    ..+.|.|.+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~  122 (136)
T 2d9c_A           89 ADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAK  122 (136)
T ss_dssp             TTCEEEEEEEEECCSSSCEEEEECCCEEEEEECC
T ss_pred             HHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeC
Confidence            99999999995422   112    4578888764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.68  E-value=4.9e-16  Score=95.22  Aligned_cols=90  Identities=12%  Similarity=0.009  Sum_probs=69.1

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.......+++.+|++++|.|.+. .+.+.|.|||.. .. +       ..+.||.+..  +....+|.|.+++.+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g-~~-i-------~~~~~~~~~~--~~~~~~L~I~~~~~~D   74 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNG-QE-I-------RPSTKYIFEH--KGCQRILFINNCQMTD   74 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESS-CB-C-------CCBTTEEEEE--ETTEEEEEEEEECTTT
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECC-EE-C-------CCCCCEEEEe--cCCEEEEEEcCCCcCc
Confidence            555655555557899999999999999 578899999853 21 1       2356888763  3456799999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+   +..+..+.|.|.+.
T Consensus        75 ~G~Y~C~a---g~~~~~~~l~V~~~   96 (100)
T 2yuv_A           75 DSEYYVTA---GDEKCSTELFVRSG   96 (100)
T ss_dssp             CCEEEEEE---TTEEEEEEEEECCS
T ss_pred             CEEEEEEE---CCceEEEEEEEecC
Confidence            99999999   55677788888764

>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}

Probab=99.68  E-value=1.5e-16  Score=105.69  Aligned_cols=95  Identities=16%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             eEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Ee-cc-eE-E--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TS-GV-LT-Y--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~-~~-~~-~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+++.+|++|+|+|.+++.  ....++||||..+   ..| .. .. .. .  ...+||.+..+...+.++|+|++++.+
T Consensus        18 ~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   97 (152)
T 3v0a_C           18 GGLVQPGGSLRLSCAASGFTLGSRYMSWVRQAPGEGFEWVSSIEPSGTAWDGDSAKGRFTTSRDDAKNTLYLQMSNLQPE   97 (152)
T ss_dssp             CCBCSSCSEEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECSTTTTTCEEEEETTTTEEEEEEESCCGG
T ss_pred             CEEEccCCCEEEEEEecCCCccCCeEEEEEECCCCCCEEEEEEeCCCcEecCCcccCcEEEEecCCCCEEEEEECCCCcc
Confidence            4679999999999999764  2468999999742   233 22 11 11 1  235899998766667899999999999


Q ss_pred             CCEEEEEeecCC-------CCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPY-------TTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~-------~~~s~~~~L~V~g~  109 (113)
                      |+|+|+|++...       ...-....|.|.++
T Consensus        98 Dsg~Y~C~~~~~~~~~~~~~~fG~GT~L~V~~~  130 (152)
T 3v0a_C           98 DTGVYYCATGYRTDTRIPGGSWGQGTQVTVSSE  130 (152)
T ss_dssp             GCEEEEEESSSSCCSCCTTCCBCCCCEEBC---
T ss_pred             cCEEEEEEEccCCCccccccEECCCEEEEEeCC
Confidence            999999999642       12233456666665

>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D

Probab=99.68  E-value=1e-15  Score=100.34  Aligned_cols=85  Identities=15%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Ee---cc-eEEc--CCCCEEEEEeCCCCcEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TS---GV-LTYT--NDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~---~~-~~~~--~~~R~~~~~~~~~~~~~L~   76 (113)
                      +++.+..+ +.+|++|+|+|.+++.  ....|.||||.+   +..| ..   +. ....  ..+||.+..+..++.++|+
T Consensus         6 v~Q~p~~~-v~~G~sVtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sLt   84 (137)
T 3lh2_H            6 LVQSGAEV-KRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLE   84 (137)
T ss_dssp             EEECCCEE-ECSSCCEEEEEEEESSCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCEE-EcCCCCEEEEEEecCCcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccCCcEEEEecCCCCEEEEE
Confidence            34555555 9999999999999853  246899999974   2333 32   11 1121  2579999876677899999


Q ss_pred             EccCCCCCCEEEEEeecC
Q psy14080         77 IKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~   94 (113)
                      |++++++|+|+|+|++..
T Consensus        85 I~~lq~~Dsg~Y~C~~~~  102 (137)
T 3lh2_H           85 LNSLRPEDTAVYYCAREG  102 (137)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEE
Confidence            999999999999999964

>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*

Probab=99.68  E-value=2.9e-16  Score=103.98  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=62.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---ceE-E--cCCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---VLT-Y--TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~~~-~--~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.+ .+++.+|++|+|+|.++..  ....+.||||.++   ..| ...   ... .  ...+||.+..+...+.++|+|
T Consensus         7 ~Q~~-~~~v~~G~svtL~C~~s~~~~~~~~v~WyrQ~~g~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I   85 (146)
T 3qyc_A            7 VESG-GGLIKPGGSLRLSCAASGVRLSAYDMAWVRQAPGKGLEWVSAISSSGGSTYYADSVKGRFTISRDNSKNTVYLQM   85 (146)
T ss_dssp             EEEC-CEEECTTCCEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EeeC-CEEECCCCCEEEEEEeeCCCcCCCEEEEEEECCCCCcEEEEEEEcCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            3444 4689999999999999864  2467999999742   333 221   111 1  135899998665567899999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|+|+|+|++..
T Consensus        86 ~~lq~~Dsg~YyCa~~~  102 (146)
T 3qyc_A           86 NSLRAEDTAVYYCVTLP  102 (146)
T ss_dssp             CSCCGGGCEEEEEEECC
T ss_pred             CCCCHHhCEEEEEEEec
Confidence            99999999999999964

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5.3e-16  Score=97.67  Aligned_cols=86  Identities=13%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ....+++.+|+++.|.|.+.+.+.+.|.|+|..  ..+        ...|+.+..  .....+|.|.+++.+|+|.|.|.
T Consensus        30 ~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g--~~l--------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           30 LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGG--APL--------DTSRVHVRT--SDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             TSSCEEEESSSCEEEEEEEEEESCCEEEEEETT--EEC--------CCSSCEEEE--CSSEEEEEESSCCTTTCEEEEEE
T ss_pred             cCCCEEEECCCEEEEEEEEccCCCCEEEEEECC--EEC--------CCCcEEEEE--CCCeEEEEECCCChhcCEEEEEE
Confidence            356789999999999999999999999999842  222        135666552  34567899999999999999999


Q ss_pred             e-cCCCCeeEEEEeceecc
Q psy14080         92 A-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g~  109 (113)
                      + +..+..+..+.|.|.+.
T Consensus        98 a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             EECSSCEECCEEEEEEECC
T ss_pred             EEeCCCeEEEEEEEEEEcC
Confidence            9 45677788889988763

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=99.68  E-value=7.3e-16  Score=98.55  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEE--EEEecCCC---eEE-Ee--cc-eEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRV--SWVRRRDW---HIL-TS--GV-LTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V--~W~k~~~~---~~l-~~--~~-~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      +..+++.+|++|+|+|.++..  ....+  .|||+.++   ..| ..  +. ...  ...+||.+..+..++.++|+|.+
T Consensus         7 ~~~~~v~~G~~vtL~C~~s~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~   86 (122)
T 3nn8_A            7 SGPEDVKPGASVKISCKASGYSLSTSGMGVNWVKQSPGKGLEWLAHIYWDDDKRYNPSLKSRATLTVDKTSSTVYLELRS   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSTTCEEEEEEEETTEEEEEEEEEETTCCEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEeCCCcEEEEEEEECCCccCceEEeEEEEeCCCCCcEEEEEEEcCCCeecCccccCCEEEEEeCCCCEEEEEECC
Confidence            445789999999999999763  23456  99999743   222 11  11 111  12589999876667889999999


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                      ++++|+|+|+|++..
T Consensus        87 ~~~~Dsg~Y~C~~~~  101 (122)
T 3nn8_A           87 LTSEDSSVYYCARRG  101 (122)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CChhhCEEEEEEEEe
Confidence            999999999999965

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.68  E-value=4e-16  Score=94.92  Aligned_cols=84  Identities=11%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....++++.+|++++|.|.+ +.+.+.|.|||..  ..+       ..++||.+..  +....+|.|.+++.+|+|.|+
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~--~~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~   79 (95)
T 2k1m_A           12 SKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGG--SDI-------SASNKYGLAT--EGTRHTLTVREVGPADQGSYA   79 (95)
T ss_dssp             SBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSS--SEE-------CSSTTCEEEE--ETTEEEEEESSCCTTCCSEEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECC--EEC-------CCCCcEEEEE--cCCEEEEEEcCCCcccCEEEE
Confidence            344567899999999999999 5677899999842  222       2456888764  234679999999999999999


Q ss_pred             EeecCCCCeeEEEEeceec
Q psy14080         90 CQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g  108 (113)
                      |.+   +..+..+.|.|.+
T Consensus        80 C~a---g~~~~~~~l~V~e   95 (95)
T 2k1m_A           80 VIA---GSSKVKFDLKVIE   95 (95)
T ss_dssp             EEE---TTEEEEEEEEEEC
T ss_pred             EEE---CCceEEEEEEEeC
Confidence            999   4456678888863

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=97.77  Aligned_cols=88  Identities=13%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CCceeeEeecc-eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAFGQ-ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~~~-~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +|+.|...... .+.+.+|++++|.|.+++ +.+.|.|||.+  ..+       ..++||.+..  +++..+|.|.+++.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g--~~i-------~~~~~~~i~~--~~~~~~L~I~~v~~   70 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDG--QEV-------EESDFVVLEN--EGPHRRLVLPATQP   70 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETT--SCC-------CCCSSCEEEE--ETTEEEEEESSCCG
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECC--EEe-------eeeeeeeEEe--cCCeEEEEeCCCCh
Confidence            57777765432 356778999999999976 67889999842  222       2467888764  34567999999999


Q ss_pred             CCCEEEEEeecCCCCeeEEEEece
Q psy14080         83 RDNGTYECQAQPYTTTSHSQNAPG  106 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~~s~~~~L~V  106 (113)
                      +|+|.|.|.+..   .+..++|.|
T Consensus        71 ~D~G~Y~C~a~n---~~~~~~ltV   91 (91)
T 2lvc_A           71 SDGGEFQCVAGD---ECAYFTVTI   91 (91)
T ss_dssp             GGCSEEEEECSS---CEEEEEEEC
T ss_pred             hhcEEEEEEEcc---eEEEEEEEC
Confidence            999999999843   355566665

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.1e-16  Score=95.22  Aligned_cols=91  Identities=24%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+. .....+++.+|++++|.|.+.+.+.+.|.|+|..  ..+.      ..+.|+.+.     .+.+|.|.+++.+|
T Consensus         8 ~P~i~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~--~~~~------~~~~~~~~~-----~~~~L~i~~v~~~d   73 (100)
T 2edj_A            8 PPIIL-QGPANQTLAVDGTALLKCKATGDPLPVISWLKEG--FTFP------GRDPRATIQ-----EQGTLQIKNLRISD   73 (100)
T ss_dssp             SCEEE-ECCCCEEEESSSEEEECCEEECSSCCEEEEEESS--SEES------SSCSSCEEC-----TTCCEEEESCCTTT
T ss_pred             CCEEE-eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECC--EECC------CCCCCEEEc-----CCCEEEEccCCccc
Confidence            44444 4456788999999999999999888999999843  2221      135677654     24489999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+. ..+..+..+.|.|.+.
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           74 TGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             CCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             CEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            999999994 5567778888988764

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.67  E-value=4.8e-16  Score=106.63  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc-----e-EE--cCCCCEEEEEeCCCCcEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV-----L-TY--TNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~-----~-~~--~~~~R~~~~~~~~~~~~~L~   76 (113)
                      .....+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ....     . ..  ...+||.+..+...+.++|+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ   84 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence            344567899999999999998643  579999998742   222 2111     0 11  12589998865556789999


Q ss_pred             EccCCCCCCEEEEEeecCCC---CeeEEEEecee
Q psy14080         77 IKFLQKRDNGTYECQAQPYT---TTSHSQNAPGL  107 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~~---~~s~~~~L~V~  107 (113)
                      |++++.+|+|.|+|.+....   .....+.|.|.
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             ECCCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence            99999999999999996532   23444566665

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.67  E-value=1.8e-16  Score=98.70  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+. ....++++.+|+++.|.|.+.+.+.+.|.|+|...  .+       ..+.|+.+..  .....+|.|.+++.+|
T Consensus        14 ~~~i~-~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~--~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~D   81 (106)
T 1nct_A           14 AARIL-TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQ--VL-------STSARHQVTT--TKYKSTFEISSVQASD   81 (106)
T ss_dssp             CCEEE-ECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSS--CC-------TTCSSEEEEE--CSSEEEEEECCCCSSC
T ss_pred             CCEEE-ECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCE--EC-------CCCCCEEEEE--CCCEEEEEECcCCchh
Confidence            34443 34567899999999999999998889999998431  11       2467888763  3457899999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEecee
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~  107 (113)
                      +|.|+|.+. ..+..+..+.|.|.
T Consensus        82 ~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           82 EGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             CEEEEEEEEeCCCeEEEEEEEEEE
Confidence            999999994 55777888888875

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=7.3e-16  Score=108.06  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .++....+++.+|++|+|+|.+++.+  ...|.|||+..   ...+........  .++||.+..+...+.++|+|++++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            34556778999999999999998543  46899999863   234433322221  258999986555678999999999


Q ss_pred             CCCCEEEEEeecCCC---------CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT---------TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~---------~~s~~~~L~V~g  108 (113)
                      .+|+|+|+|++....         .......|.|.+
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~  119 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEP  119 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEEC
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEec
Confidence            999999999996431         122345777775

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.67  E-value=4.9e-16  Score=98.11  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=70.3

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ..+++++.+|++++|.|.+.+.+.+.|.|+|..  ..+.      ..+.|+.+..+ ..+.++|.|.+++.+|+|.|+|.
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~--~~~~------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           21 KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN--EMVQ------FNTDRISLYQD-NTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCCCEEEETTEEEEEEEEBCCBSCCEEEEEETT--EECC------CCBTTEEEEEC-TTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCcEEEeCCCcEEEEEEEeccCCCEEEEEECC--EECc------CCCCeEEEEeC-CCCeEEEEECCCCcccCEEEEEE
Confidence            345679999999999999999888999999843  2221      12578887642 33566999999999999999999


Q ss_pred             e-cCCCCeeEEEEeceecc
Q psy14080         92 A-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g~  109 (113)
                      + +..+..+..+.|.|.+.
T Consensus        92 a~N~~G~~~~~~~l~V~~~  110 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTAR  110 (116)
T ss_dssp             EEETTEEEEEEEEEEEECC
T ss_pred             EEcCCCeEEEEEEEEEeCC
Confidence            9 45677788899998764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.67  E-value=4.5e-16  Score=109.03  Aligned_cols=106  Identities=8%  Similarity=0.036  Sum_probs=75.0

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---e-EEEec-c--e-EE--cCCCCEEEEEeCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---H-ILTSG-V--L-TY--TNDARFQVIHTDGSD   71 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~-~l~~~-~--~-~~--~~~~R~~~~~~~~~~   71 (113)
                      .|..........+++.+|++|+|+|.+.+.  +.+.|.|||+.+.   . ++... .  . ..  ...+||.+..+...+
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            355566677778999999999999999873  5678999998632   2 22222 1  0 11  124799998766677


Q ss_pred             cEEEEEccCCCCCCEEEEEeecCC-------------CCeeEEEEeceecc
Q psy14080         72 DWNLQIKFLQKRDNGTYECQAQPY-------------TTTSHSQNAPGLGD  109 (113)
Q Consensus        72 ~~~L~I~~v~~~D~G~Y~C~~~~~-------------~~~s~~~~L~V~g~  109 (113)
                      .++|+|++++++|+|.|+|++...             ......+.|.|.+.
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~  134 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG  134 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence            899999999999999999999653             22344566777653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.67  E-value=2.8e-16  Score=95.04  Aligned_cols=91  Identities=12%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+... ..++++.+|+++.|.|.+.+.+.+.|.|+|...+..+         +.++....  .....+|.|.+++.+|
T Consensus         2 ~P~i~~~-~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~---------~~~~~~~~--~~~~~~L~i~~~~~~D   69 (93)
T 1wit_A            2 KPKILTA-SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL---------APELLVDA--KSSTTSIFFPSAKRAD   69 (93)
T ss_dssp             CCEECCC-CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBC---------STTSEEEE--ETTEEEEECTTBCGGG
T ss_pred             CCeEEcC-CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCccc---------CCcEEEEe--cCCEEEEEECCCChhc
Confidence            5556444 4578999999999999999999999999985411222         11222221  1346799999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEecee
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      +|.|.|.+ +..+..+..+.|.|.
T Consensus        70 ~G~Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           70 SGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEEEcCCCeEEEEEEEEEC
Confidence            99999999 556777888888773

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=95.66  Aligned_cols=90  Identities=11%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++..+.....++++.+|++++|.|.+.+ +.+.|.|||.. . .+       ..+.||.+..+  ....+|.|.+++.+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g-~-~~-------~~~~~~~~~~~--~~~~~L~I~~v~~~D   74 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDR-K-AI-------RKSQKYDVVCE--GTMAMLVIRGASLKD   74 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESS-C-BC-------CCSSSEEEEEE--TTEEEEEESSCCTTT
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECC-E-Ec-------cCCCCEEEEEC--CCEEEEEECCCCccc
Confidence            3344444556689999999999999997 66789999843 2 11       23568887642  346799999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+..   .+..+.|.|.+.
T Consensus        75 ~G~Y~C~a~n---~~~~~~l~V~~~   96 (103)
T 2edf_A           75 AGEYTCEVEA---SKSTASLHVEEK   96 (103)
T ss_dssp             CSEEEEECSS---CEEEEEEEECCC
T ss_pred             CEEEEEEEcc---CCcEEEEEEeCC
Confidence            9999999966   466788888764

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.67  E-value=6.4e-16  Score=106.47  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ....    ...  ..++||.+..+...++++|+|+++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            3558899999999999998754  578999998632   222 2210    111  125799988654567899999999


Q ss_pred             CCCCCEEEEEeecCCCC----eeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYTT----TSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~----~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|++.....    ....+.|.|.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            99999999999965432    22345777764

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=99.66  E-value=5.3e-16  Score=108.01  Aligned_cols=97  Identities=16%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eE-EEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HI-LTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~-l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ++....+++.+|++|+|+|.++.. ...|.|||+.++   .. ++..... ...+||.+..+...+.++|+|++++++|+
T Consensus         7 ~Q~p~~v~v~~G~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sL~I~~l~~~Ds   84 (205)
T 3qjh_A            7 EQSPSALSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGT-KENGRLKSAFDSKERYSTLHIRDAQLEDS   84 (205)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEE-EEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEeCCEEEEeCCCCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEEeccccccC
Confidence            455667899999999999999876 568999999732   22 3322222 34689998766778899999999999999


Q ss_pred             EEEEEeecC--CC--CeeEEEEeceec
Q psy14080         86 GTYECQAQP--YT--TTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~~~--~~--~~s~~~~L~V~g  108 (113)
                      |+|+|++..  ..  .......|.|..
T Consensus        85 G~Y~Cav~~~~~~~~~fG~GT~L~V~~  111 (205)
T 3qjh_A           85 GTYFCAAEASNTNKVVFGTGTRLQVLP  111 (205)
T ss_dssp             EEEEEEEEETTTCCEEEBCCEEEEEEC
T ss_pred             eEEEEEEEcCCCCccccCCCEEEEEeC
Confidence            999999962  11  122345666664

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=3.9e-16  Score=108.43  Aligned_cols=99  Identities=12%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEecce--EE--c-CCCCEEEEEeCCCCcEEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTSGVL--TY--T-NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~~~~--~~--~-~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .++....+++.+|++|+|+|.+.+.  +.+.|.|||+..   .. +++....  .+  . .++||.+..+...++++|+|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            3455677899999999999999864  457899999873   22 3332211  11  1 36899988655557899999


Q ss_pred             ccCCCCCCEEEEEeecCC---C--CeeEEEEecee
Q psy14080         78 KFLQKRDNGTYECQAQPY---T--TTSHSQNAPGL  107 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~---~--~~s~~~~L~V~  107 (113)
                      ++++.+|+|+|+|++...   .  .....+.|.|.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~  118 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVI  118 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEe
Confidence            999999999999999652   2  22334577776

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.66  E-value=6.8e-16  Score=106.97  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---e-EEEecc---e-EE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---H-ILTSGV---L-TY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~-~l~~~~---~-~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++|+|+|.+++.  ....|.|||+...   . ++....   . ..  ...+||.+..+...+.++|+|++
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (230)
T 3n9g_H            6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS   85 (230)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            3446889999999999999753  3568999998742   2 222211   0 11  12579999877777889999999


Q ss_pred             CCCCCCEEEEEeecCC
Q psy14080         80 LQKRDNGTYECQAQPY   95 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~   95 (113)
                      ++.+|+|+|+|++...
T Consensus        86 v~~~DsG~Y~C~~~~~  101 (230)
T 3n9g_H           86 LRSEDTAVYYCARDWG  101 (230)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhhCEEEEEEEccC
Confidence            9999999999999653

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.66  E-value=9.3e-16  Score=106.23  Aligned_cols=98  Identities=10%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec----ceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG----VLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~----~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .....+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...    ...+.  .++||.+..+...++++|+|+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            345678899999999999998765  578999998632   222 111    11111  257999876555678999999


Q ss_pred             cCCCCCCEEEEEeecCCC--CeeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|++....  .....+.|.|.+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            999999999999996432  122345677764

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.66  E-value=8.5e-16  Score=95.63  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=53.9

Q ss_pred             eEEEecCCcEEEEEEEccCCCC-----EEEEEecCCCeEEE-e-cceEE-----cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKV-----RVSWVRRRDWHILT-S-GVLTY-----TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~-----~V~W~k~~~~~~l~-~-~~~~~-----~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+|++|+|+|.+.+.+..     .|.|+|+....++. . +....     .-.+|+.+..    ++++|+|+++++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~sL~I~~v~~   78 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS----DSWTLRLHNLQI   78 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET----TTTEEEECSCCG
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC----CCEEEEEcCCCh
Confidence            5788999999999999754432     59999986443322 2 21111     1135776642    368999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|.|+|.+..
T Consensus        79 ~D~G~Y~C~v~~   90 (110)
T 1ncn_A           79 KDKGLYQCIIHH   90 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             HHCEEEEEEEEc
Confidence            999999999964

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=97.19  Aligned_cols=95  Identities=12%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ...++++.+|++++|.|.+.+.+.+.|.|||..  ..+.      ....||.+..+ ..+.++|.|.+++.+|
T Consensus         8 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g--~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~D   77 (110)
T 2dm2_A            8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDG--KQIS------PKSDHYTIQRD-LDGTCSLHTTASTLDD   77 (110)
T ss_dssp             CCCBSS-CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSS--CBCC------TTCSSEEEEEC-TTCEEEEEESSCCTTT
T ss_pred             CCEEEe-cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECC--EECC------CCCCeEEEEEC-CCcEEEEEECCCChhh
Confidence            444433 346788999999999999999888999999843  2221      13568887642 3455799999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+. ..+..+..+.|.|.+.
T Consensus        78 ~G~Y~C~a~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           78 DGNYTIMAANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             CSCCEEEEECTTCCEEECCCEEEECC
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEECC
Confidence            999999994 5577788888888764

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.66  E-value=1e-15  Score=105.57  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=68.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec----ceEEc--CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG----VLTYT--NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~----~~~~~--~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...    ...+.  .++||.+..+...++++|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4457899999999999998765  678999998632   222 211    11111  25799988655567899999999


Q ss_pred             CCCCCEEEEEeecCCC------C---eeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYT------T---TSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~------~---~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+....      .   ....+.|.|.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            9999999999996542      1   22345777765

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=8.3e-16  Score=107.25  Aligned_cols=99  Identities=18%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEecc---eEEc---CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTSGV---LTYT---NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~~~---~~~~---~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++....+++.+|++|+|+|.+.+.  +.+.|.|||+..   .. +++...   ..+.   .++||.+..+...++++|+|
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (242)
T 1hxm_B            5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (242)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             CcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEE
Confidence            445667899999999999999875  567899999863   22 222211   1121   36899987655557899999


Q ss_pred             ccCCCCCCEEEEEeecCCC--------CeeEEEEeceec
Q psy14080         78 KFLQKRDNGTYECQAQPYT--------TTSHSQNAPGLG  108 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~~--------~~s~~~~L~V~g  108 (113)
                      ++++.+|+|.|+|++....        .....+.|.|.+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (242)
T 1hxm_B           85 HNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (242)
T ss_dssp             CSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             CCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcc
Confidence            9999999999999996432        122346777765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.66  E-value=1.4e-15  Score=106.84  Aligned_cols=100  Identities=10%  Similarity=0.027  Sum_probs=74.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-e--cceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-S--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+. .  +......++||.+..+...+.++|+|.++++
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   85 (256)
T 3tf7_C            6 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHR   85 (256)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCG
T ss_pred             EEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCc
Confidence            3455677899999999999999988889999999763   22222 2  1222344789998755677889999999999


Q ss_pred             CCCEEEEEeecCCC-----CeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYT-----TTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~-----~~s~~~~L~V~g  108 (113)
                      +|+|.|+|.+....     .....+.|.|.+
T Consensus        86 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           86 SDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             GGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             ccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            99999999995432     123345777765

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=98.15  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCC----CEEEEEeCCCCcEEEEEccC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA----RFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~----R~~~~~~~~~~~~~L~I~~v   80 (113)
                      |+..+.....++++.+|++++|.|.+.+.+ +.|.|||..  ..+.       .+.    ||.+..  ++...+|.|.++
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g--~~i~-------~~~~~~~~~~~~~--~~~~~~L~I~~~   74 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNG--VELT-------REDSFKARYRFKK--DGKRHILIFSDV   74 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESS--CBCC-------CSCCSSCCCEEEE--CSSEEEEECSSC
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECC--EECC-------CCCCcceeEEEEE--CCCEEEEEECCC
Confidence            344444455678999999999999999887 899999843  2221       122    777763  345679999999


Q ss_pred             CCCCCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+..   .+..+.|.|.+.
T Consensus        75 ~~~D~G~Y~C~a~n---~~~~~~l~V~~~  100 (101)
T 2edk_A           75 VQEDRGRYQVITNG---GQCEAELIVEEK  100 (101)
T ss_dssp             CGGGCSBEEEECSS---CEECCBEEEECC
T ss_pred             ChhhCEEEEEEEcC---CcEEEEEEEeCC
Confidence            99999999999964   445567777653

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2e-16  Score=98.36  Aligned_cols=88  Identities=9%  Similarity=0.005  Sum_probs=66.6

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+....+++++.+|++|+|.|.+.+.+. +.|.|||..  ..+       ..++||.+..  +++..+|.|.+++.+|+|
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g--~~i-------~~~~r~~~~~--~~~~~~L~I~~v~~~D~G   78 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGG--KTV-------GSSSRFQATR--QGRKYILVVREAAPSDAG   78 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSS--SBC-------SBCSSCEEEE--ETTEEEEEECSCCTTTCS
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECC--EEC-------CCCCCEEEEE--cCCEEEEEECCCCHHHCE
Confidence            3444556789999999999999987764 479999843  222       2356888764  345679999999999999


Q ss_pred             EEEEeecCCCCeeEEEEeceecc
Q psy14080         87 TYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        87 ~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      .|+|.+..   .+..+.|.|.+.
T Consensus        79 ~Y~C~a~~---~~~~a~L~V~~~   98 (104)
T 2eny_A           79 EVVFSVRG---LTSKASLIVRER   98 (104)
T ss_dssp             CEEEEETT---EEEEECEEEECC
T ss_pred             EEEEEECC---eeEEEEEEEeCC
Confidence            99998843   456788888764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.65  E-value=1.7e-15  Score=94.52  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+ ....+++++.+|++++|.|.+++.  +.|.|||.. . .+       ..++||.+..  +....+|.|.+++.+
T Consensus        18 ~pp~~-~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~-~-~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~   83 (113)
T 2edh_A           18 LPIKF-TEGLRNEEATEGATAVLRCELSKM--APVEWWKGH-E-TL-------RDGDRHSLRQ--DGARCELQIRGLVAE   83 (113)
T ss_dssp             SCCCE-EECCCCCEECTTSCEEEEEEESSC--CCCEEEESS-S-BC-------CCSSSEEEEE--ETTEEEEEECSCCST
T ss_pred             CCCcc-cccCCceEEeCCCeEEEEEEECCC--CcEEEEECC-E-EC-------CCCCcEEEEE--CCCEEEEEECCCChh
Confidence            34444 344567799999999999999765  679999843 2 22       2357888874  335679999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+   +..+..+.|.|.+.
T Consensus        84 D~G~Y~C~a---~~~~~~~~l~V~~~  106 (113)
T 2edh_A           84 DAGEYLCMC---GKERTSAMLTVRAM  106 (113)
T ss_dssp             TCEEEEEEE---TTEEEEEEEEECCC
T ss_pred             hCEEEEEEe---CCCCEEEEEEEeCC
Confidence            999999999   56677788888764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-16  Score=98.95  Aligned_cols=92  Identities=11%  Similarity=-0.048  Sum_probs=68.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..+....+++++.+|++++|.|.+.+.+.+.|.|||..  ..+       ..++|+.+.. .+.+..+|.|.+++.+|
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g--~~l-------~~~~~~~~~~-~~~~~~~L~I~~v~~~D   81 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDK--TPL-------HANELNEIDA-QPGGYHVLTLRQLALKD   81 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESS--CEE-------CCSSSCCBCC-BTTTBCCBEECSCCTTT
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECC--EEC-------CCCCcEEEEE-cCCCEEEEEEcCCChhh
Confidence            4434455557889999999999999999888899999843  222       2355666542 13456799999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+   +..+..+.|.|.+.
T Consensus        82 ~G~Y~C~~---g~~~~~~~L~V~~~  103 (115)
T 2cr6_A           82 SGTIYFEA---GDQRASAALRVTEK  103 (115)
T ss_dssp             CEEEEEEE---TTEECCEEEEEECC
T ss_pred             CEEEEEEE---CCeeEEEEEEEECC
Confidence            99999994   44555678888764

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.65  E-value=6.6e-16  Score=109.04  Aligned_cols=107  Identities=11%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             cCCceeeE-----eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-Eecce-EEcCC-CCEEEEEeCCCC
Q psy14080          3 AAPGGILT-----AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGVL-TYTND-ARFQVIHTDGSD   71 (113)
Q Consensus         3 ~~p~~i~~-----~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~~-~~~~~-~R~~~~~~~~~~   71 (113)
                      |+|+.++.     +.+..+++.+|++|+|+|.++......++||||.+   ...| ..... ..... +||.+..+..++
T Consensus         1 ~~~~~~~~~~~V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~   80 (226)
T 3tjh_C            1 ADPGYLLEAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDS   80 (226)
T ss_dssp             --------CEEEECSCSEEEEETTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTT
T ss_pred             CCCccceeeeEEEEeCCEEEEEcCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCC
Confidence            34555542     33556899999999999999876667899999973   2333 22211 11124 899988667788


Q ss_pred             cEEEEEccCCCCCCEEEEEeecCC---CC--eeEEEEeceecc
Q psy14080         72 DWNLQIKFLQKRDNGTYECQAQPY---TT--TSHSQNAPGLGD  109 (113)
Q Consensus        72 ~~~L~I~~v~~~D~G~Y~C~~~~~---~~--~s~~~~L~V~g~  109 (113)
                      .++|+|++++++|+|+|+|++...   ..  .-....|.|.+.
T Consensus        81 ~~sLtI~~lq~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~  123 (226)
T 3tjh_C           81 SFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPN  123 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEESSCSSSEEECCCEEEEEECC
T ss_pred             EEEEEEecCCcccCCCEEEEEEecCCccccccCCCeEEEEeCC
Confidence            999999999999999999999632   11  123346666654

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.65  E-value=1.4e-15  Score=108.28  Aligned_cols=85  Identities=16%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++++|.|+.+......++||||.+   +.+|.......  ...+||...  .++.+++|+|+++++
T Consensus       139 vltQsP~slsvs~G~~vtlsC~~S~~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS--~sgt~ftLtIs~lq~  216 (254)
T 4f9p_D          139 VLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGS--GSGTEFTLSINSVET  216 (254)
T ss_dssp             CEEEECSEEEECTTCEEEEEEEESSCCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEE--CCTTEEEEEEESCCT
T ss_pred             ccccCCceeEEcCCCcEeeEEEccCcccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEee--eeCCEEEEEECCCCH
Confidence            56788888899999999999999877667799999985   34444332222  235799987  466789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      ||+|+|+|+...
T Consensus       217 eD~A~YYC~q~~  228 (254)
T 4f9p_D          217 EDFGIYFCQQSN  228 (254)
T ss_dssp             TCCEEEEEEECS
T ss_pred             HHCEEEEEeecC
Confidence            999999999843

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.65  E-value=3.5e-15  Score=98.18  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=72.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ...++++.+|++++|.|.+.+.+.+.|.|||..  ..+       ..+.|+.+.. ...+..+|.|.+++.+|
T Consensus        41 ~P~~~~-~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g--~~~-------~~~~~~~~~~-~~~~~~~L~I~~v~~~D  109 (154)
T 1fhg_A           41 KPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD--NPV-------KESRHFQIDY-DEEGNCSLTISEVCGDD  109 (154)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETT--EEC-------CCSSSEEEEE-CTTCEEEEEESSCCGGG
T ss_pred             CCeEEc-cCCcEEEeCCCeEEEEEEEEEecCCEEEEEECC--EEC-------CCCCcEEEEE-CCCCeEEEEECCCChhc
Confidence            444433 445689999999999999999888999999843  222       2456887764 23456899999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..+..+..+.|.|...
T Consensus       110 ~G~Y~C~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          110 DAKYTCKAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEeCc
Confidence            99999999 45667778888888754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.65  E-value=1.1e-15  Score=106.36  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEE-Eecc---eEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHIL-TSGV---LTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l-~~~~---~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..   ...+ +...   ....  .++||.+..+..+++++|+|++++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4557899999999999998754  57899999863   2333 2211   1111  257999886656678999999999


Q ss_pred             CCCCEEEEEeecC-C---C---CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQP-Y---T---TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~-~---~---~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|++.. .   +   .....+.|.|.+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  120 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSS  120 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECS
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEcc
Confidence            9999999999973 1   1   123446777765

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.64  E-value=3.4e-16  Score=108.49  Aligned_cols=100  Identities=13%  Similarity=-0.000  Sum_probs=71.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-Eecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.++......+.||||.+   ...| ..... .....+||.+..+..++.++|+|++++++|
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~D   83 (199)
T 3gsn_A            4 EQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPED   83 (199)
T ss_dssp             EEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGG
T ss_pred             EECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccC
Confidence            455667899999999999999876667899999973   2333 22211 112257998875567788999999999999


Q ss_pred             CEEEEEeecCCCC--eeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTT--TSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~--~s~~~~L~V~g~  109 (113)
                      +|+|+|++.....  .-....|.|.+.
T Consensus        84 sG~Y~Ca~~~~~~~~fG~GT~L~V~~~  110 (199)
T 3gsn_A           84 SATYLCARNTGNQFYFGTGTSLTVIPN  110 (199)
T ss_dssp             CEEEEEEEESSSCEEECSCEEEEEECC
T ss_pred             CccEEEEEcccccccCCCCEEEEEecc
Confidence            9999999954221  123346666653

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.64  E-value=6.1e-16  Score=98.54  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCC----EEEEEecCC----CeEEEe--c-ceEEcC----CCCEEEEEeC----
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKV----RVSWVRRRD----WHILTS--G-VLTYTN----DARFQVIHTD----   68 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~----~V~W~k~~~----~~~l~~--~-~~~~~~----~~R~~~~~~~----   68 (113)
                      +.......+++.+|++|+|+|.+.....+    .|.|||+..    ..+...  . ......    .+|+.+..+.    
T Consensus         4 ~~v~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g   83 (128)
T 3r0n_A            4 VRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTG   83 (128)
T ss_dssp             CEEECCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCS
T ss_pred             eEEecCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccc
Confidence            34445667889999999999999876544    899999742    222222  1 111111    2577765321    


Q ss_pred             -----CCCcEEEEEccCCCCCCEEEEEeecCC--CCeeEEEEece
Q psy14080         69 -----GSDDWNLQIKFLQKRDNGTYECQAQPY--TTTSHSQNAPG  106 (113)
Q Consensus        69 -----~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V  106 (113)
                           +.++++|+|.+++.+|+|.|+|.+.+.  +..+..++|.|
T Consensus        84 ~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           84 QDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             TTCCCBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccccCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence                 124789999999999999999998654  45667777765

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.64  E-value=1.4e-15  Score=104.21  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Ee--c----ceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TS--G----VLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~--~----~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ..  +    .....  .++||.+..+...++++|+|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4467899999999999998754  678999998632   222 21  1    11111  247999886555678999999


Q ss_pred             cCCCCCCEEEEEeecCCC------CeeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYT------TTSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~------~~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+....      .....+.|.|..
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            999999999999996432      223345666653

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=5.3e-16  Score=96.01  Aligned_cols=90  Identities=18%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+ .....++++.+|++++|.|.+.+.+.+ |.|||.. . .+       ..++|+.+..  +....+|.|.+++.+|
T Consensus         8 ~p~~-~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g-~-~~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D   74 (106)
T 2dlt_A            8 QLEV-LQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNG-V-EV-------RPSKRITISH--VGRFHKLVIDDVRPED   74 (106)
T ss_dssp             CCCE-EECCCCEEEESSCCEECCCEESCSSCE-EEEEESS-C-BC-------CCCSSCEEEE--ETTEEEEEESSCCTTT
T ss_pred             CCEE-ecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCC-E-EC-------cCCCCEEEEE--eCCEEEEEECCCCcCC
Confidence            4444 344567899999999999999987766 9999853 2 11       2356887763  2356799999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceec
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|.|+|.+... ..+..+.|.|+.
T Consensus        75 ~G~Y~C~a~n~-~~~~~~~l~V~~   97 (106)
T 2dlt_A           75 EGDYTFVPDGY-ALSLSAKLNFLE   97 (106)
T ss_dssp             CSCEEEEEETS-CCCCCBCEEEEC
T ss_pred             CEEEEEEEccC-CceEEEEEEEEE
Confidence            99999999654 445556666664

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.64  E-value=1.6e-15  Score=106.13  Aligned_cols=106  Identities=14%  Similarity=0.067  Sum_probs=71.7

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Ee--c-ceEE--cCCCCEEEEEeCCCCc
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TS--G-VLTY--TNDARFQVIHTDGSDD   72 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~--~-~~~~--~~~~R~~~~~~~~~~~   72 (113)
                      .++.+.......+++.+|++|+|+|.+.+.  +.+.|.|||+.+.   ..+ ..  + ....  ...+||.+..+...+.
T Consensus         6 ~~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   85 (257)
T 3gkz_A            6 DDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQ   85 (257)
T ss_dssp             ---CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTE
T ss_pred             CCccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCce
Confidence            345555556667789999999999999984  4689999997632   222 11  1 1111  1257999886555678


Q ss_pred             EEEEEccCCCCCCEEEEEeecCC-----CCeeEEEEeceecc
Q psy14080         73 WNLQIKFLQKRDNGTYECQAQPY-----TTTSHSQNAPGLGD  109 (113)
Q Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~-----~~~s~~~~L~V~g~  109 (113)
                      ++|+|.+++++|+|.|+|.+...     ...+..+.|.|.+.
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           86 VYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            89999999999999999999653     12234566777654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.63  E-value=1.7e-15  Score=107.60  Aligned_cols=98  Identities=11%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec----ceEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG----VLTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~----~~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .....+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...    ...+  ..++||.+..+...+.++|+|+
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            345678999999999999998765  578999998632   222 211    1111  1257999876544568999999


Q ss_pred             cCCCCCCEEEEEeecCCC----CeeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|++...+    .....+.|.|.+
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            999999999999997543    122345777764

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.63  E-value=7.8e-16  Score=94.55  Aligned_cols=90  Identities=12%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+. ...+++++.+|++++|.|.+.+.+.+ |.|||.. . .+       ..+.||.+..  +...++|.|.+++.+
T Consensus         7 ~pp~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~-~-~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~   73 (103)
T 2e7b_A            7 GPVRFQ-EALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGN-N-VL-------RPGDKYSLRQ--EGAMLELVVRNLRPQ   73 (103)
T ss_dssp             CCCCCT-BCCCCEEEESSSCEEEEEECSSCCCS-CEEEESS-S-BC-------CCSSSEEEEE--CSSEEEEEECSCCTT
T ss_pred             CCCEEE-ecCccEEEECCCcEEEEEEEeCCCCC-eEEEECC-E-EC-------CCCCcEEEEE--cCCEEEEEEccCCcc
Confidence            355554 34566899999999999999988878 9999843 2 21       2356888763  456779999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+   +..+..+.|.|.+.
T Consensus        74 D~G~Y~C~~---g~~~~~~~l~V~~~   96 (103)
T 2e7b_A           74 DSGRYSCSF---GDQTTSATLTVTAL   96 (103)
T ss_dssp             TCCCEEEEC---SSCBCCBCEEEECC
T ss_pred             cCEEEEEEE---CCcEEEEEEEEEec
Confidence            999999983   33445566766653

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.63  E-value=1.3e-15  Score=94.26  Aligned_cols=89  Identities=16%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +.|+.+... .+++++.+|++++|.|.+.+.  +.|.|||... . +       ..+.||.+..  +...++|.|.+++.
T Consensus         6 ~~pp~~~~~-~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~-~-~-------~~~~~~~~~~--~~~~~~L~I~~v~~   71 (108)
T 2dm7_A            6 SGPARFTQD-LKTKEASEGATATLQCELSKV--APVEWKKGPE-T-L-------RDGGRYSLKQ--DGTRCELQIHDLSV   71 (108)
T ss_dssp             CCCCCBCSC-CBCCEEETTSCEEEEEEBSSS--CCCEEESSSS-B-C-------CSSSSCEEEE--ETTEEEEEESSCCT
T ss_pred             CCCCeeeec-CCcEEEeCCCcEEEEEEeCCC--CeeEEEECCE-E-C-------CCCCCEEEEe--cCCEEEEEECCCCc
Confidence            456666544 467899999999999999865  6799998532 1 1       2457888764  34567899999999


Q ss_pred             CCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|+|.+..   .+..+.|.|..
T Consensus        72 ~D~G~Y~C~a~n---~~~~~~l~V~~   94 (108)
T 2dm7_A           72 ADAGEYSCMCGQ---ERTSATLTVRA   94 (108)
T ss_dssp             TTCSEEEEEETT---EEEEEECEEEC
T ss_pred             ccCEEEEEEEcC---CEEEEEEEEec
Confidence            999999999933   46677888876

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=2e-17  Score=113.39  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+++...+.|.|||+.++   . +++.. .......+||.+..+..++.++|+|++++.+|
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~D   83 (185)
T 3c6l_A            4 RQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGD   83 (185)
Confidence            3445678899999999999998766568999998742   2 22221 11112367999875455678999999999999


Q ss_pred             CEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      +|+|+|++... ........|.|++.
T Consensus        84 sG~Y~C~~~~~~~~fg~gT~L~V~~~  109 (185)
T 3c6l_A           84 SATYFCAASDNRIFFGDGTQLVVKPN  109 (185)
Confidence            99999999642 12234457777654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.63  E-value=7.9e-16  Score=106.63  Aligned_cols=82  Identities=15%  Similarity=0.091  Sum_probs=60.8

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEE-Eecc---e-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHIL-TSGV---L-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l-~~~~---~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +..+++.+|++|+|+|.+++.  ....|.|||+..   ...+ ....   . ..  ...+||.+..+...++++|+|+++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            345889999999999999753  356899999873   2222 2211   1 11  124799998666667899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +.+|+|+|+|++..
T Consensus        87 ~~~DsG~Y~C~~~~  100 (226)
T 3mlr_H           87 QASDTGKYFCTRLY  100 (226)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccCEEEEEeEcc
Confidence            99999999999954

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.63  E-value=9.9e-16  Score=94.43  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.. ...++++.+|+++.|.|.+.+.+.+.+.|+|... .+        ..+.|+....    ++.+|.|.+++.+|
T Consensus        10 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~-~~--------~~~~~~~~~~----~~~~L~i~~v~~~D   75 (108)
T 3kvq_A           10 APTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE-TL--------VEDSGIVLKD----GNRNLTIRRVRKED   75 (108)
T ss_dssp             -CCCBS-CCCCEEEETTCCEEEECBCC----CCEEEEESSS-BC--------CCBTTEEEET----TTTEEEECSCCGGG
T ss_pred             CCceec-CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCe-Ec--------ccCCCeEEeC----CCcEEEEeecCccc
Confidence            444433 3467889999999999999988888999998542 11        1245555542    45689999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+. ..+..+..+.|.|.+.
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           76 EGLYTCQACSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             CEEEEEEEC----CEEEEEEEEEEC-
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEeCC
Confidence            999999994 5577888899999875

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=7.3e-16  Score=95.44  Aligned_cols=95  Identities=18%  Similarity=0.122  Sum_probs=70.8

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.++. ...++++.+|++++|.|.+.+.+.+.|.|+|.. ..+        ..+.++.... ...+..+|.|.+++.+
T Consensus         8 ~~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g-~~~--------~~~~~~~~~~-~~~~~~~L~i~~v~~~   76 (110)
T 2dm3_A            8 FRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDG-KPV--------RPDSAHKMLV-RENGVHSLIIEPVTSR   76 (110)
T ss_dssp             CCCEEEE-CCCEEEEESSSCBCCEEEEECSSCCEEECBBSS-SBC--------CCCSSEEEEE-CTTSCEEEEESSCCGG
T ss_pred             CCCcEEe-CCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECC-EEC--------CCCCceEEEE-ecCCeEEEEEeeCCcc
Confidence            3555544 456789999999999999999888999999843 221        1233333332 3345679999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+. ..+..+..+.|.|.+.
T Consensus        77 D~G~Y~C~a~n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           77 DAGIYTCIATNRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             GCSBBCEEEECSSCEEEECCEEEEECC
T ss_pred             cCEEEEEEEECCCCEEEEEEEEEEeCC
Confidence            9999999994 5577788889998865

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.63  E-value=1.1e-15  Score=109.17  Aligned_cols=85  Identities=21%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .++|+.+..+++.+|++|+|.|+.+..-...++||+|.+   +.+|.......  ...+||....  .+.+++|+|+++|
T Consensus         2 ivlTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~--Sgt~ftLtIs~lq   79 (259)
T 4f9l_D            2 IVLTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSG--SATGFTLTISSLQ   79 (259)
T ss_dssp             CCEEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCC
T ss_pred             CCEEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeec--cCCeEEEEEcccC
Confidence            367888888899999999999999866566799999985   34444332222  2357999764  4578999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      +||+|+|+|+..
T Consensus        80 ~eD~A~YyC~~~   91 (259)
T 4f9l_D           80 PEDIATYYCQQG   91 (259)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             hhhCEEEEEeec
Confidence            999999999984

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.63  E-value=1.7e-15  Score=103.81  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=68.0

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEE-ec---ceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILT-SG---VLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~-~~---~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..   ...+. ..   ....  ...+||.+..+...++++|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4567899999999999998753  57899999863   22222 21   1111  1246999876555678999999999


Q ss_pred             CCCCEEEEEeecCCC----CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|++...+    .....+.|.|.+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            999999999996532    233346777764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=93.14  Aligned_cols=89  Identities=18%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+... ...+++.+|++++|.|.+.+.+.+.|.|+|.. . .+.        ..+....    .+..+|.|.+++.+
T Consensus        10 ~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g-~-~~~--------~~~~~~~----~~~~~L~i~~v~~~   74 (99)
T 2yr3_A           10 VAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNG-Q-PIQ--------YARSTCE----AGVAELHIQDALPE   74 (99)
T ss_dssp             EEEEEEEC-CCCEEECTTCCEEEECEEEEESCCCCEEEESS-S-BCS--------SCCCEEE----TTEEEEEECSCCTT
T ss_pred             cCCceeec-CCCCEEeCCCeEEEEEEEeeeCCCeEEEEECC-E-ECc--------ccceEee----CCeEEEEECCCChh
Confidence            35555543 56788999999999999998888899999843 1 111        1122222    24679999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEecee
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~  107 (113)
                      |+|.|+|.+. ..+..+..+.|.|.
T Consensus        75 D~G~Y~C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           75 DHGTYTCLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             CCBCEEEEEECSSCEEEEECCEEEC
T ss_pred             hCEEEEEEEEECCCeEEEEEEEEEC
Confidence            9999999994 55677777777763

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.63  E-value=2.5e-15  Score=105.19  Aligned_cols=96  Identities=9%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+.+.   ..+ ...   . ...  ..++||.+..+...+.++|+|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            3457799999999999998754  678999998632   222 111   0 111  235799988655567889999999


Q ss_pred             CCCCCEEEEEeecCC-----CCeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPY-----TTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-----~~~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+...     ......+.|.|.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            999999999999643     2234456777765

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.63  E-value=2.8e-15  Score=102.56  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEecc------eEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTSGV------LTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~~~------~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   . ++....      ....  ..+||.+..+...+.++|+|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4567899999999999998765  689999998632   1 222111      1111  147999876444567899999


Q ss_pred             cCCCCCCEEEEEeecCCC----CeeEEEEecee
Q psy14080         79 FLQKRDNGTYECQAQPYT----TTSHSQNAPGL  107 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~----~~s~~~~L~V~  107 (113)
                      +++.+|+|.|+|.+...+    .....+.|.|.
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  119 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVS  119 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEEC
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEc
Confidence            999999999999996543    11234566665

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.63  E-value=2.8e-15  Score=106.60  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec----ceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG----VLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~----~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...    ...+  ...+||.+..+...+.++|+|+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4457899999999999998754  578999998732   222 221    1111  125799988665567899999999


Q ss_pred             CCCCCEEEEEeecCC
Q psy14080         81 QKRDNGTYECQAQPY   95 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~   95 (113)
                      +.+|+|+|+|++...
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (257)
T 3bn9_D           87 RAEDTAVYYCARPYL  101 (257)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.63  E-value=5.1e-15  Score=103.46  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=69.9

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .....+++.+|++|+|+|.+.+.+  .+.|.|||+.+.   ..+ ...   . ...  ..++||.+..+...+.++|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            344567899999999999998743  679999997632   222 111   0 111  2357999887666778999999


Q ss_pred             cCCCCCCEEEEEeecCCC-C-eeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYT-T-TSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~-~-~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+.... . ....+.|.|.+
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            999999999999996532 2 23456677764

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=99.62  E-value=1.6e-15  Score=97.99  Aligned_cols=94  Identities=15%  Similarity=0.053  Sum_probs=65.6

Q ss_pred             eEEEecCCcEEEEEEEccCC---CCEEEEEecCCCe---EEE--e-cceE-EcCCCC-EEEEEeCCCCcEEEEEccCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWH---ILT--S-GVLT-YTNDAR-FQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~---~l~--~-~~~~-~~~~~R-~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+++.+|++|+|+|.++...   ...|.|||+..+.   ++.  . .... ....+| |....  +++.++|+|++++.+
T Consensus        10 ~~~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~r~f~~~~--~~~~~sL~I~~l~~~   87 (130)
T 3osk_A           10 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTS--SGNQVNLTIQGLRAM   87 (130)
T ss_dssp             EEECCTTSCEEEEEEECCCSSCCEEEEEEEEEETTEEEEEEEEEEETTSCCCCCSCCSEEEEE--ETTEEEEEECSCCGG
T ss_pred             EEEEeCCCeEEEEEEecCCCCCceEEEEEEEeCCCCCcEEEEEEEcCCCceeeecceEEeccC--CCCEEEEEEcCCChH
Confidence            68899999999999998653   3479999997532   332  2 1111 112456 76653  457899999999999


Q ss_pred             CCEEEEEeecCC---CC---eeEEEEeceeccc
Q psy14080         84 DNGTYECQAQPY---TT---TSHSQNAPGLGDL  110 (113)
Q Consensus        84 D~G~Y~C~~~~~---~~---~s~~~~L~V~g~~  110 (113)
                      |+|+|+|++...   +.   .-....|.|+++.
T Consensus        88 Dsg~Y~C~~~~~~~~~~~~~fg~GT~L~V~~~~  120 (130)
T 3osk_A           88 DTGLYICKVELMYPPPYYLGIGNGTQIYVIDPE  120 (130)
T ss_dssp             GCEEEEEEEEEEESSSCEEEECCCEEEECCCCC
T ss_pred             HCEEEEEEEEeccCCchhcccCCCEEEEEeccC
Confidence            999999999531   11   2345677777654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=93.37  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=64.4

Q ss_pred             CCceeeEeecc--eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          4 APGGILTAFGQ--ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         4 ~p~~i~~~~~~--~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +|+.++..-..  ++++.+|++++|.|.+.+.+.+ |.|||..  ..+       ..+.|+.+..  +....+|.|.+++
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g--~~~-------~~~~~~~~~~--~~~~~~L~I~~~~   73 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDG--QKV-------EESELLVVKM--DGRKHRLILPEAK   73 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETT--EEC-------CCBTTBEEEE--ETTEEEEEESSCC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCC--EEC-------CCCCCEEEEe--CCCEEEEEECCCC
Confidence            34444443322  2789999999999999988877 9999843  222       2356777763  3456799999999


Q ss_pred             CCCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+...   +..+.|.|.+
T Consensus        74 ~~D~G~Y~C~a~n~---~~~~~l~V~~   97 (104)
T 2e6p_A           74 VQDSGEFECRTEGV---SAFFGVTVQD   97 (104)
T ss_dssp             TTTCEEEEEECSSC---CCCEEEEEEC
T ss_pred             hhhCEEEEEEECCc---eEEEEEEEcC
Confidence            99999999999653   2245666654

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=99.62  E-value=1.3e-15  Score=108.37  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             ceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeE-EEecce---EE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHI-LTSGVL---TY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~-l~~~~~---~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+++.+|++|+|+|.+++..  ...|.|||+..   ... +.....   ..  ..++||.+..+...++++|+|++++.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (263)
T 3iu4_H            8 GPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQT   87 (263)
T ss_dssp             CCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCH
Confidence            357899999999999997532  56899999863   222 222110   11  12589999866666789999999999


Q ss_pred             CCCEEEEEeecCC
Q psy14080         83 RDNGTYECQAQPY   95 (113)
Q Consensus        83 ~D~G~Y~C~~~~~   95 (113)
                      +|+|+|+|++...
T Consensus        88 ~DsG~Y~C~~~~~  100 (263)
T 3iu4_H           88 DDTAMYYCARSGV  100 (263)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             HHCEEEEEEEEeC
Confidence            9999999999643

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.62  E-value=4.8e-15  Score=102.96  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC-----CCEEEEEecCCC---eEEEecceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRDW---HILTSGVLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~~---~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +++.+..+++.+|++|+|+|.+.+.+     .+.|.|||+.++   ..+........  .++||.+..  +.+.++|+|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   81 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKIS   81 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEEC
Confidence            35566788999999999999998876     689999997632   22322211111  257998863  4567899999


Q ss_pred             cCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+.....  .+..+.|.|.+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  113 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKG  113 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEEC
Confidence            9999999999999965322  33345677765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.62  E-value=3.2e-15  Score=102.03  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=67.2

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec----ceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG----VLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~----~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...    ...+  ..++||.+..+...+.++|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            4567899999999999998764  678999998522   111 111    1111  125799987644456789999999


Q ss_pred             CCCCCEEEEEeecCCC-----CeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYT-----TTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~-----~~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+....     .....+.|.|.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            9999999999996533     222345666665

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.62  E-value=1.9e-15  Score=104.56  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEE--EEEecCC---CeEE-Ee---cc--e-EE--cCCCCEEEEEeCCCCcEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRV--SWVRRRD---WHIL-TS---GV--L-TY--TNDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V--~W~k~~~---~~~l-~~---~~--~-~~--~~~~R~~~~~~~~~~~~~L   75 (113)
                      ....+++.+|++|+|+|.+++.  ....+  .|||+..   ...+ ..   +.  . ..  ...+||.+..+...++++|
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (232)
T 3qhz_H            6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL   85 (232)
T ss_dssp             EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred             cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence            3445789999999999999753  22344  9999863   2222 21   11  1 11  1247999987666789999


Q ss_pred             EEccCCCCCCEEEEEeecCC
Q psy14080         76 QIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +|.+++.+|+|+|+|++...
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~  105 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLR  105 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECC
T ss_pred             EECcCChhhCEEEEEEEeec
Confidence            99999999999999999643

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.62  E-value=1.8e-15  Score=106.36  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---ce-EE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++|+|+|.+++.  ....|.|||+..+   ..+ ...   .. ..  ...+||.+..+...++++|+|++
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3456789999999999999763  3578999998632   222 211   11 11  12479998866556789999999


Q ss_pred             CCCCCCEEEEEeecCC-----CCeeEEEEecee
Q psy14080         80 LQKRDNGTYECQAQPY-----TTTSHSQNAPGL  107 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-----~~~s~~~~L~V~  107 (113)
                      ++.+|+|+|+|.+...     ......+.|.|.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~  118 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVS  118 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEEC
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEe
Confidence            9999999999999643     123344566665

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.62  E-value=3.1e-15  Score=101.63  Aligned_cols=95  Identities=13%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEec---ceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTSG---VLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~~---~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   . ++...   ....  ...+||.+..+...++++|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            4567899999999999998764  478999997532   1 12211   1111  1257999875444467899999999


Q ss_pred             CCCCEEEEEeecCCCCeeEEEEecee
Q psy14080         82 KRDNGTYECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      .+|+|.|+|.+.........+.|.|.
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~l~V~  112 (210)
T 3d9a_H           87 TEDTATYYCANWDGDYWGQGTLVTVS  112 (210)
T ss_dssp             GGGCEEEEEEETTSSCBCCCEEEEEC
T ss_pred             cccCEEEEEEEecCcccccceEEEec
Confidence            99999999999654333333566665

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.62  E-value=2e-15  Score=91.82  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=64.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+. .....+++.+|+++.|.|.+.+.+ +.|.|+|.  +..+       ..+.|+.+.      +.+|.|.+++.+|
T Consensus         9 pp~~~-~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~--g~~~-------~~~~~~~~~------~~~L~i~~~~~~D   71 (95)
T 2ckn_A            9 PWGVP-VEVESLLVHPGDLLQLRCRLRDDV-QSINWLRD--GVQL-------VESNRTRIT------GEEVEVRDSIPAD   71 (95)
T ss_dssp             SCCBT-TBBCCEEECTTSCEEEECCEESSC-CEEEEEBT--TBCC-------CCCSSEEEC------SSEEEESSCCGGG
T ss_pred             CCEEE-cCcceEEEcCCCeEEEEEECCCCC-CceEEEEC--CEec-------CCCCCEEEe------CCEEEECCCChHH
Confidence            33433 345678999999999999999887 79999983  2222       135677653      4489999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEece
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V  106 (113)
                      +|.|.|.+. ..+..+..+.|.|
T Consensus        72 ~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           72 SGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEeccCCCcEEEEEEEEE
Confidence            999999994 5567777788776

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.62  E-value=6.4e-15  Score=102.13  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=69.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ec--c-eEEcC---CCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SG--V-LTYTN---DARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~--~-~~~~~---~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+. ..  . .....   .+||.+..+ ..+.++|+|.+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~   83 (246)
T 4dzb_B            5 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVTS   83 (246)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEECS
T ss_pred             EECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEECC
Confidence            455667899999999999999998889999999753   22222 21  1 11111   279988753 35688999999


Q ss_pred             CCCCCCEEEEEeecCC-----CCeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPY-----TTTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-----~~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+...     ......+.|.|.+
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            9999999999999632     1233445666664

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.61  E-value=1.5e-15  Score=92.58  Aligned_cols=85  Identities=13%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .+.+++.+|++++|.|.+.+.+.+.|.|+|..  ..+..+.    ...++...    .+..+|.|.+++.+|+|.|+|.+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~--~~~~~~~----~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a   84 (100)
T 3caf_A           15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG--KEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVV   84 (100)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCCEEEEEETT--EECCGGG----STTCCEEE----GGGTEEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEecCCCEEEEEEEccccCCCEEEEEECC--EEccccc----ccccEEEe----cCeEEEEEccCCcCCCEEEEEEE
Confidence            45688999999999999998888999999843  2222110    11233433    24569999999999999999999


Q ss_pred             -cCCCCeeEEEEecee
Q psy14080         93 -QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~  107 (113)
                       +..+..+..+.|.|+
T Consensus        85 ~N~~g~~~~~~~l~Vv  100 (100)
T 3caf_A           85 ENEYGSINHTYHLDVV  100 (100)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EeCCCEEEEEEEEEEC
Confidence             455677788888774

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=92.00  Aligned_cols=89  Identities=16%  Similarity=0.069  Sum_probs=65.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+ ....+++++.+|++++|.|.+ +.+.+.|.|+|...  .+       ..+.||.+..  +....+|.|.+++.+|
T Consensus         8 pp~~-~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~--~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~D   74 (103)
T 2dku_A            8 ANCF-TEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLL--EL-------RASGKHQPSQ--EGLTLRLTISALEKAD   74 (103)
T ss_dssp             CCCC-SSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSC--BC-------CSSSSEEEEE--ETTEEEEEEESCCTTT
T ss_pred             CCEe-EecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCE--EC-------CCCCeEEEEe--CCCEEEEEECCCCccc
Confidence            4443 344467899999999999995 66778999998542  11       2356888763  3456799999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.   .+..+..+.|.|.+.
T Consensus        75 ~G~Y~C~---~g~~~~~~~l~V~~~   96 (103)
T 2dku_A           75 SDTYTCD---IGQAQSRAQLLVQGR   96 (103)
T ss_dssp             CSEEEEE---CSSCBCCEEEEEECS
T ss_pred             CEEEEEE---eCCceEEEEEEEeCc
Confidence            9999998   344455678888764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=106.46  Aligned_cols=100  Identities=7%  Similarity=-0.006  Sum_probs=60.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ec--c--eEEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SG--V--LTYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~--~--~~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+. ..  .  ....  -.+|+....+...+.++|+|++
T Consensus         6 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (259)
T 3omz_A            6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRN   85 (259)
T ss_dssp             -----CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESS
T ss_pred             ccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECC
Confidence            344567899999999999999988888999999753   22222 21  0  1111  1235554444556788999999


Q ss_pred             CCCCCCEEEEEeecCCC----CeeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQPYT----TTSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~----~~s~~~~L~V~g~  109 (113)
                      ++++|+|.|+|++....    .....+.|.|.+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           86 LIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             CCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             CCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            99999999999996432    2344566777653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.61  E-value=3.7e-15  Score=103.01  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             cceEEEecCCcEEEEEEEccCCC----CEEEEEecCC---CeEE-Eec---ceEEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK----VRVSWVRRRD---WHIL-TSG---VLTYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~----~~V~W~k~~~---~~~l-~~~---~~~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      +..+++.+|++|+|+|.+.+.+.    +.|.|||+..   ...+ ...   ...+.  ..+||.+..+...++++|+|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            45678999999999999997653    7899999863   2222 221   11111  2469998765555679999999


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                      ++.+|+|.|+|++..
T Consensus        87 v~~~D~G~Y~C~~~~  101 (228)
T 3bae_H           87 VDTADTATYYCARRG  101 (228)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCcccCEEEEEEEec
Confidence            999999999999964

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.61  E-value=8.4e-15  Score=102.01  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=70.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++.+..+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.......  ..++||.+..  +.+.++|+|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE   81 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCChH
Confidence            3556677899999999999999988888999999763   23332211111  1257998863  346789999999999


Q ss_pred             CCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         84 DNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      |+|.|+|.+.....  .+..+.|.|.+
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~  108 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITG  108 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcC
Confidence            99999999965422  23345676665

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.61  E-value=3.1e-15  Score=105.24  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             ceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eecc---e-EE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSGV---L-TY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~~---~-~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+++.  ....|.|||+...   ..+ ....   . ..  ...+||.+..+...++++|+|++++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            45789999999999999753  3468999998732   222 2211   1 11  1247999987666688999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      .+|+|+|+|++..
T Consensus       111 ~~DsG~Y~C~~~~  123 (256)
T 3sob_H          111 AEDTAVYYCARGS  123 (256)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccCEEEEEEEec
Confidence            9999999999965

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=99.61  E-value=2.5e-15  Score=95.19  Aligned_cols=94  Identities=20%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             cceEEEecCCcEEEEEEEccCCC---CEEEEEecCCC--e-EEEe-cceEEc----CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDW--H-ILTS-GVLTYT----NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~--~-~l~~-~~~~~~----~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ...+++.+|++|+|+|.++....   ..|.|||+.+.  . ++.. ......    -.+|+.+.. ...++++|+|++++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~   86 (119)
T 2pnd_A            8 PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSH-KVPGDVSLQINTLQ   86 (119)
T ss_dssp             CSEEEEETTSCEEECCBCCCCTTCEEEEEEEEEEETTEEEEEEEEETTEEECCSGGGTTTEEECC-SSTTBCCEEESSCC
T ss_pred             CceEEEEcCCcEEEEEEEcCCCCCCceEEEEEEeCCCCceEEEEEcCCCceeecccccCcEEEcc-CCCCCEEEEEccCC
Confidence            45688999999999999875432   25799998532  2 2322 111111    136777653 24578899999999


Q ss_pred             CCCCEEEEEeecC-CC-----CeeEEEEecee
Q psy14080         82 KRDNGTYECQAQP-YT-----TTSHSQNAPGL  107 (113)
Q Consensus        82 ~~D~G~Y~C~~~~-~~-----~~s~~~~L~V~  107 (113)
                      .+|+|+|+|.+.. .+     ..+..+.|.|.
T Consensus        87 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~~L~V~  118 (119)
T 2pnd_A           87 MDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR  118 (119)
T ss_dssp             GGGCEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cccCEEEEEEEEECcCCCCeEEEEEEEEEEEc
Confidence            9999999999943 12     22456666664

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.61  E-value=5.7e-15  Score=100.26  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEEE-ecce---EEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHILT-SGVL---TYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l~-~~~~---~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++.. .+++.+|++|+|+|.+.+. +.+.|.|||+..   ...+. ....   ...  ..+||.+..  ..++++|+|.+
T Consensus         5 ~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~   81 (218)
T 3s96_B            5 TQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISN   81 (218)
T ss_dssp             ECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEESS
T ss_pred             EeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEEcc
Confidence            3344 7899999999999999988 888999999752   22222 2110   111  236998864  45788999999


Q ss_pred             CCCCCCEEEEEeecCC-C-----CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPY-T-----TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-~-----~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+... +     ..+..+.|.|.+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            9999999999999542 2     234456777764

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.61  E-value=2.1e-15  Score=107.63  Aligned_cols=96  Identities=13%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC----eEEEec-c--e-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW----HILTSG-V--L-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~----~~l~~~-~--~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.  +.+.|.|||+.+.    .++... .  . ..  ..++||.+..+...+.++|+|+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            677899999999999999875  4578999998632    223222 1  0 11  135799998766777899999999


Q ss_pred             CCCCCEEEEEeecCC----------CCeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPY----------TTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~----------~~~s~~~~L~V~g  108 (113)
                      +++|+|.|+|++...          ......+.|.|.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~  124 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSS  124 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcC
Confidence            999999999999653          1233445666655

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.61  E-value=8.8e-15  Score=101.38  Aligned_cols=98  Identities=10%  Similarity=0.024  Sum_probs=68.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-Ee-cceEE-cC---CCCEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TS-GVLTY-TN---DARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~-~~~~~-~~---~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++....+++.+|++|+|+| ..+.+.+.|.|||+..+   ..+ .. +.... ..   ++||.+.. ...++++|+|.+
T Consensus         5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~   82 (245)
T 4ei6_B            5 VLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVER-PDGSYFTLKIQP   82 (245)
T ss_dssp             CEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEEC-CTTSCEEEEECS
T ss_pred             eEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEe-ccCceEEEEECC
Confidence            34556678999999999999 55667789999997532   222 21 11111 12   28999875 346789999999


Q ss_pred             CCCCCCEEEEEeecC-----CCCeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQP-----YTTTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~-----~~~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+..     .......+.|.|.+
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (245)
T 4ei6_B           83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE  116 (245)
T ss_dssp             CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence            999999999999963     12334455676764

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.60  E-value=7.4e-15  Score=89.01  Aligned_cols=84  Identities=19%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....++++.+|+++.|.|.+.+  .+.|.|+|.  +..+       ..+.|+.+.      +.+|.|.+++.+|+|.|+
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~--g~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~   67 (95)
T 4hwu_A            5 GSQPEAYVVAPGESLELQCMLKD--AAVISWTKD--GVHL-------GPNNRTVLI------GEYLQIKGATPRDSGLYA   67 (95)
T ss_dssp             ---CEEEEECTTSCEEEECCCCT--TCEEEEEET--TEEE-------CCCSSEEEE------TTEEEECSCCGGGCEEEE
T ss_pred             ccCCCcEEECCCCEEEEEEEeCC--CCEEEEEEC--CEEC-------CCCceEEEe------CCEEEECcCCcccCEEEE
Confidence            34556788999999999999986  479999984  3333       235677764      348999999999999999


Q ss_pred             Eeec-CCCCeeEEEEeceeccc
Q psy14080         90 CQAQ-PYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        90 C~~~-~~~~~s~~~~L~V~g~~  110 (113)
                      |.+. ..+..+..+.|.|.+..
T Consensus        68 C~a~n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           68 CTAARTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             EEEECSSCEEEEEEEEEECCC-
T ss_pred             EEEccCCCcEEEEEEEEEeCCc
Confidence            9994 55777888899887653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.60  E-value=1e-14  Score=103.19  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC------CCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV------KVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~------~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      +++.+..+++.+|++|+|+|.+.+.+      .+.|.|||+..   ...+........  .++||.+..  +.+.++|+|
T Consensus         8 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I   85 (264)
T 2gjj_A            8 LTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDFTLTI   85 (264)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEE
T ss_pred             eEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEEEEEE
Confidence            35567788999999999999998876      57899999853   233322111111  257998864  356789999


Q ss_pred             ccCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         78 KFLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      .+++++|+|.|+|++.....  ....+.|.|.+
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  118 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKR  118 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEc
Confidence            99999999999999965322  23345677765

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=95.89  Aligned_cols=91  Identities=19%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+. ....++++.+|++++|.|.+.+.+.+.+.|||.. . .+.      ..+.|+.+..     +.+|.|.+++.+|
T Consensus         8 pP~i~-~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g-~-~~~------~~~~~~~~~~-----~~~L~i~~v~~~D   73 (118)
T 2eo9_A            8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG-V-LVS------TQDSRIKQLE-----NGVLQIRYAKLGD   73 (118)
T ss_dssp             SCCCS-BCCCCEEEETTCEEEEECBCCCSSCCEEEEEESS-S-BCC------TTSTTEEEEE-----TTEEEEESCCGGG
T ss_pred             CCEEE-cCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECC-E-ECc------CCCCeEEEcc-----CCEEEEccCCcCC
Confidence            44443 4456689999999999999998888999999843 2 221      1367887753     3389999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+. ..+..+..+.|.|.+.
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (118)
T 2eo9_A           74 TGRYTCIASTPSGEATWSAYIEVQEF   99 (118)
T ss_dssp             CCCEEEEEECSSCEEEEECCEEEECC
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEEeC
Confidence            999999994 5567777888888765

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.60  E-value=3.6e-15  Score=104.09  Aligned_cols=82  Identities=12%  Similarity=0.033  Sum_probs=60.9

Q ss_pred             cceEEEecCCcEEEEEEEccCC----CCEEEEEecCC---CeEE-Eec--------ce-EE--cCCCCEEEEEeCCCCcE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRD---WHIL-TSG--------VL-TY--TNDARFQVIHTDGSDDW   73 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~---~~~l-~~~--------~~-~~--~~~~R~~~~~~~~~~~~   73 (113)
                      +..+++.+|++|+|+|.+++.+    ...|.|||+..   ...+ ...        .. ..  ...+||.+..+...+.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            4467899999999999998654    45899999873   2222 111        01 11  12479998865556789


Q ss_pred             EEEEccCCCCCCEEEEEeecC
Q psy14080         74 NLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +|+|.+++.+|+|+|+|++..
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~  107 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFG  107 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEec
Confidence            999999999999999999953

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.60  E-value=1e-14  Score=100.92  Aligned_cols=97  Identities=12%  Similarity=0.010  Sum_probs=68.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-c-ceEE---cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-G-VLTY---TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~-~~~~---~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++....+++.+|++|+|+|.+.+ +.+.|.|||+..   ...+.. . ....   ...+||.+..+ ..++++|+|.+++
T Consensus         6 ~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~   83 (240)
T 3q5y_A            6 VQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALE   83 (240)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECSCC
T ss_pred             ccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECcCC
Confidence            44566789999999999999876 667999999763   222222 1 1111   12479998753 5678999999999


Q ss_pred             CCCCEEEEEeecC--C--CCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQP--Y--TTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~--~--~~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+..  .  ......+.|.|.+
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence            9999999999962  1  2233445666664

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.60  E-value=1.5e-14  Score=99.11  Aligned_cols=98  Identities=19%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.. .... ...++||.+..  ..++++|+|.+++.+
T Consensus        27 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           27 MTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPE  104 (237)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEECCCChh
Confidence            3445667899999999999999988888999999763   233332 2211 12367998873  456889999999999


Q ss_pred             CCEEEEEeecCCC--CeeEEEEeceec
Q psy14080         84 DNGTYECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      |+|.|+|.+....  .....+.|.|..
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEec
Confidence            9999999995432  233345566543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.60  E-value=1.5e-14  Score=97.97  Aligned_cols=98  Identities=14%  Similarity=0.093  Sum_probs=69.7

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++.+..+++.+|++++|.|.+.+.+.+.|.|||+..   ...+........  ..+||.+..  +.+.++|.|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~   81 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE   81 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChh
Confidence            4555678899999999999999988878899999753   223332221111  247998864  456789999999999


Q ss_pred             CCEEEEEeecCC-CC-eeEEEEeceec
Q psy14080         84 DNGTYECQAQPY-TT-TSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~-~~-~s~~~~L~V~g  108 (113)
                      |+|.|+|.+... +. ....+.|.|..
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           82 DFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             hCEEEEEeeecCCcceeCCCEEEEEec
Confidence            999999999643 22 22334566653

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.60  E-value=2.7e-15  Score=105.76  Aligned_cols=82  Identities=15%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---ce-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+++.  ....|.|||+..+   ..+ ...   .. ..  ...+||.+..+...+.++|+|+++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            446789999999999999753  3568999998742   222 211   11 11  125799998665567899999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +.+|+|+|+|++..
T Consensus        86 ~~~DsG~Y~C~~~~   99 (248)
T 3u2s_H           86 RVEDTATYFCVREA   99 (248)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEeC
Confidence            99999999999964

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=1e-14  Score=100.56  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=71.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC----CCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++.+..+++.+|++|+|+|.+.+.+    .+.|.|||+..   ...+.......  ..+.||.+..  ..+.++|+|.++
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v   82 (240)
T 1moe_A            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPV   82 (240)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             EeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEcCC
Confidence            4556778999999999999999887    67899999752   23332221111  1357999864  457889999999


Q ss_pred             CCCCCEEEEEeecCC-CC-eeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPY-TT-TSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-~~-~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+... +. .+..+.|.|.+.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecC
Confidence            999999999999643 22 344567777653

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.8e-14  Score=88.69  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      +++.+|+++.|.|.+. .+.+.|.|||.  +..+       ..+.|+.+..  +....+|.|.+++.+|+|.|+|.+.. 
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~--g~~~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n-   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKD--GEEV-------VESPALLLQK--EDTVRRLVLPAVQLEDSGEYLCEIDD-   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEET--TEEC-------CCBTTBEEEE--CSSEEEEEESSCCTTTCEEEEEESSS-
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEEC--CEEC-------ccCCCEEEEE--CCCEEEEEECCCCcccCEEEEEEEec-
Confidence            6889999999999996 56788999984  3322       2356777763  23457999999999999999999966 


Q ss_pred             CCeeEEEEeceecc
Q psy14080         96 TTTSHSQNAPGLGD  109 (113)
Q Consensus        96 ~~~s~~~~L~V~g~  109 (113)
                        .+..+.|.|...
T Consensus        90 --~~~~~~l~V~~~  101 (113)
T 2cpc_A           90 --ESASFTVTVTEP  101 (113)
T ss_dssp             --CEEEEEEEEECC
T ss_pred             --CcEEEEEEEecC
Confidence              566778887653

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.59  E-value=8.7e-15  Score=103.98  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cc---eEE---cCCCCEEEEEeCCCCcEEEEEc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GV---LTY---TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~---~~~---~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.. ..   ...   ...+||.+..+ ..++++|+|.
T Consensus        27 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~  105 (279)
T 2wbj_D           27 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVT  105 (279)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEEEEES
T ss_pred             EEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEEEEEc
Confidence            3455678899999999999999877778999999863   222222 11   011   12579998753 4578899999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++.+|+|.|+|.+..
T Consensus       106 ~v~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D          106 SAHPEDSSFYICSARD  121 (279)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCCccCCEEEEEEEcc
Confidence            9999999999999964

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.59  E-value=7.4e-15  Score=104.20  Aligned_cols=98  Identities=19%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++.+..+++.+|++|+|+|.+.+.+.+.|.|||+..+   ..+.. ..... ..+.||.+..  +++.++|+|.+++.+
T Consensus        15 v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           15 MTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPE   92 (276)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEccCChh
Confidence            45567788999999999999999888889999998632   23322 21111 1357998863  456889999999999


Q ss_pred             CCEEEEEeecCC-CC-eeEEEEeceec
Q psy14080         84 DNGTYECQAQPY-TT-TSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~-~~-~s~~~~L~V~g  108 (113)
                      |+|.|+|.+... +. .+..+.|.|..
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~  119 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKG  119 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC--
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEec
Confidence            999999999543 21 33345666654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.59  E-value=4.8e-15  Score=102.97  Aligned_cols=97  Identities=16%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.. .... ...++||.+..  ..+.++|+|.+++.+|
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            8 IQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG--SGTDYSLTISNLEQED   85 (250)
T ss_dssp             ECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             EecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC--CCCEEEEEEccCChhh
Confidence            445667889999999999999998888999999863   223322 2211 12357997753  4568899999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEeceec
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      +|.|+|.+....  .......|.|..
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEEC
Confidence            999999996432  233445666665

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.59  E-value=5.2e-15  Score=101.91  Aligned_cols=93  Identities=15%  Similarity=0.179  Sum_probs=66.0

Q ss_pred             ceEEEecCCcEEEEEE---EccCCCCEEEEEecCCC--e-EE-EecceEE----cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKT---VRDIVKVRVSWVRRRDW--H-IL-TSGVLTY----TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~---v~~~~~~~V~W~k~~~~--~-~l-~~~~~~~----~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      |.+++.+|++|+|+|.   +.+.+.+.|.|||...+  . ++ .......    ....||.+..  +.+.++|.|.+++.
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~   78 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANI   78 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEE--cCCEEEEEEccCCH
Confidence            4689999999999996   45667889999996532  1 11 1111111    1235666653  45789999999999


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+. ..+..+..+.|.|..
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~  105 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVVK  105 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEecC
Confidence            99999999995 456667778888864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.59  E-value=1.8e-14  Score=102.56  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=69.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEEEe-c---ce-EE--cCCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HILTS-G---VL-TY--TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l~~-~---~~-~~--~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ...+..+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+.. .   .. ..  ..++||.+..+...+.++|+|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3455678999999999999998764  578999998632   22221 1   00 11  125799987655567799999


Q ss_pred             ccCCCCCCEEEEEeecCC-C---C--eeEEEEeceec
Q psy14080         78 KFLQKRDNGTYECQAQPY-T---T--TSHSQNAPGLG  108 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~-~---~--~s~~~~L~V~g  108 (113)
                      .+++.+|+|.|+|.+... +   .  ....+.|.|..
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~  146 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSS  146 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEec
Confidence            999999999999999643 2   1  22345677765

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.59  E-value=9.8e-15  Score=103.04  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC-----CCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .++.+..+++.+|++|+|+|.+.+.+     .+.|.|||+..   ...+........  .++||.+..  +++.++|+|.
T Consensus        18 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   95 (268)
T 1x9q_A           18 MTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFTLKIN   95 (268)
T ss_dssp             EEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEES
T ss_pred             EEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEEEEEC
Confidence            34556778899999999999998776     47899999863   233322211111  257999864  3567899999


Q ss_pred             cCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+.....  ....+.|.|.+
T Consensus        96 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A           96 RVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEC---
T ss_pred             CCChhHCEEEEEEEecCCCceEcCCEEEEEcc
Confidence            9999999999999965421  33445777765

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.59  E-value=1.3e-14  Score=98.28  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++....+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.. .... ...++||.+..  ..++++|+|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            4 MTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLESE   81 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             eEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCCcc
Confidence            3455677899999999999999998888999999752   222322 2211 12367998863  457889999999999


Q ss_pred             CCEEEEEeecCCC--CeeEEEEece
Q psy14080         84 DNGTYECQAQPYT--TTSHSQNAPG  106 (113)
Q Consensus        84 D~G~Y~C~~~~~~--~~s~~~~L~V  106 (113)
                      |+|.|+|.+....  .....+.|.|
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEE
Confidence            9999999996432  2334455666

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.59  E-value=2.1e-14  Score=99.76  Aligned_cols=97  Identities=9%  Similarity=0.034  Sum_probs=67.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEE-ec--ceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILT-SG--VLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~-~~--~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++....+++.+|++|+|+|.+. .+.+.|.|||+..+   ..+. ..  ....  ...+||.+..+ ..++++|+|++++
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~   80 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELAT   80 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSCC
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecCC
Confidence            4556778999999999999995 45789999998632   2222 11  1111  12579998742 3567899999999


Q ss_pred             CCCCEEEEEeecCCC------CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT------TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~------~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+....      .......|.|.+
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  113 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLE  113 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEES
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEec
Confidence            999999999996531      112334566665

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.59  E-value=1.5e-14  Score=101.91  Aligned_cols=98  Identities=11%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ..+..+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...   . ...  ..++||.+..+...+.++|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            345567899999999999998764  578999997532   222 211   0 011  1257999876555678999999


Q ss_pred             cCCCCCCEEEEEeecCC-C-----CeeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPY-T-----TTSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~-~-----~~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+... +     .....+.|.|..
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~  120 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS  120 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc
Confidence            99999999999999643 2     122345666654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=1e-14  Score=101.15  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             ceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|.|.+.+.+  .+.|.|||+..+   ..+ ....    ...  ....||.+..+...+.++|+|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            458899999999999999876  578999997532   222 2110    011  1357999876555678999999999


Q ss_pred             CCCCEEEEEeecCC-C--CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY-T--TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~-~--~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+... .  .....+.|.|..
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~  119 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSS  119 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECS
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEec
Confidence            99999999999643 1  122334666664

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.58  E-value=1.2e-14  Score=98.49  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=68.2

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .+++.+|++|+|+|.+.+.+.+.|.|||+.+   ...+.. .... ...++||.+..  ..++++|.|.+++.+|+|.|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~   86 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQAGDEADYY   86 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCChhhCEEEE
Confidence            6889999999999999988889999999653   233322 1111 12357998764  457889999999999999999


Q ss_pred             EeecCC-C---CeeEEEEeceec
Q psy14080         90 CQAQPY-T---TTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~-~---~~s~~~~L~V~g  108 (113)
                      |.+... +   ..+..+.|.|.+
T Consensus        87 C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           87 CQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             EEEEETTTTEEEEBCCEEEEEEC
T ss_pred             EEeccCCcceeEEcCceEEEEeC
Confidence            999543 3   345567777763

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.58  E-value=1.1e-14  Score=98.22  Aligned_cols=95  Identities=13%  Similarity=0.038  Sum_probs=68.1

Q ss_pred             eecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecc--e--EEcCC--CCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGV--L--TYTND--ARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~--~--~~~~~--~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .....+.+.+|++|+|+|.+.. .+.+.|.|+|.++..+.....  .  .+...  +|+.+.    ..+++|+|++++.+
T Consensus         4 ~~~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~   79 (180)
T 2dru_A            4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKE   79 (180)
T ss_dssp             SSCCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGG
T ss_pred             cccceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHH
Confidence            3456788999999999999854 236799999953334433211  1  12122  688762    25779999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|.|.+......+..+.|.|.+.
T Consensus        80 D~G~Y~C~v~~~~~~~~~~~L~V~~~  105 (180)
T 2dru_A           80 DRGDYYMRMLHETEDQWKITMEVYEM  105 (180)
T ss_dssp             GCEEEEEEEESSSEEEEEEEEEEECC
T ss_pred             HCeEEEEEEEcCCeEEEEEEEEEECC
Confidence            99999999965445677889998764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.58  E-value=1.1e-13  Score=92.35  Aligned_cols=96  Identities=18%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~   83 (113)
                      |+.+.. ......+.+|+++.|.|.+.+.+.+.+.|+|..++..+...    ..+.||.+..  +.+..+|.|.+++ .+
T Consensus        92 ~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~----~~~~~~~~~~--~~~~~~L~i~~~~~~~  164 (190)
T 2wv3_A           92 APDITG-HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEIS----NSSGRFFIIN--KENYTELNIVNLQITE  164 (190)
T ss_dssp             CCEEEE-ECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECC----CTTSCEEEEE--CSSEEEEEECSCCTTT
T ss_pred             CCcccc-cCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeee----cCCCeEEEec--CCCeeEEEEEeccccC
Confidence            444433 34566799999999999999988899999996555554321    2467888763  3455799999999 79


Q ss_pred             CCEEEEEee-cCCCCeeEEEEecee
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      |+|.|+|.+ +..+..+..+.|.|.
T Consensus       165 d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          165 DPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCcceeEEEEEEE
Confidence            999999999 456777888888775

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.58  E-value=5.7e-15  Score=103.09  Aligned_cols=95  Identities=18%  Similarity=0.113  Sum_probs=66.5

Q ss_pred             cceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ...+++.+|++|+|+|.+.+.  +.+.|.|||+..   ...+.. .... ...++||.+..  +.+.++|+|++++.+|+
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDE   86 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhC
Confidence            345789999999999999876  678999999753   233322 1111 12357998863  34678999999999999


Q ss_pred             EEEEEeecCC-C---CeeEEEEeceecc
Q psy14080         86 GTYECQAQPY-T---TTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~~~-~---~~s~~~~L~V~g~  109 (113)
                      |.|+|.+... .   .....+.|.|.+.
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~  114 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGS  114 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC--
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECC
Confidence            9999999542 1   2334456777653

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.58  E-value=8.4e-15  Score=102.50  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=71.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ........+++.+|++++|.|.+.+.+.+.|.|||+..+   ..+.......  ...+||.+..  ....++|+|.+++.
T Consensus       140 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~  217 (256)
T 3umt_A          140 QLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR--SGSDYSLTISSLES  217 (256)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCG
T ss_pred             EEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec--CCCEEEEEECCCCh
Confidence            344555668899999999999999887789999997532   2222221111  1257998763  35678999999999


Q ss_pred             CCCEEEEEeecCCC--CeeEEEEeceeccc
Q psy14080         83 RDNGTYECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +|+|.|+|.+....  .......|.|++..
T Consensus       218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          218 EDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             hHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            99999999996432  34566788887653

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.58  E-value=1.5e-14  Score=101.89  Aligned_cols=97  Identities=11%  Similarity=0.041  Sum_probs=66.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cc-eEEcC----CCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GV-LTYTN----DARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~-~~~~~----~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++....+++.+|++|+|+|.+.. +.+.|.|||+..+   ..+.. .. .....    ++||.+.. ...++++|+|.++
T Consensus        31 ~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v  108 (270)
T 3qib_D           31 IQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC-PSNSPCSLEIQSS  108 (270)
T ss_dssp             EEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC-CTTSCEEEEESSC
T ss_pred             EeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe-CCCcEEEEEECCC
Confidence            34456789999999999999875 6689999997632   22222 11 11111    12998874 3467899999999


Q ss_pred             CCCCCEEEEEeecCC-----CCeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPY-----TTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-----~~~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+...     ......+.|.|.+
T Consensus       109 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D          109 EAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             CGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             CHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence            999999999999642     1223445666665

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.58  E-value=1.9e-14  Score=101.15  Aligned_cols=96  Identities=11%  Similarity=0.058  Sum_probs=67.5

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ec-ceEEcC----CCCEEEEEeCCCCcEEEEEccCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SG-VLTYTN----DARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~-~~~~~~----~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +....+++.+|++|+|+|.+. .+.+.|.|||+..   ...+. .. ......    ++||.+.. ...++++|+|.+++
T Consensus        31 ~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~  108 (268)
T 3pl6_D           31 QTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVR-PEGSVSTLKIQRTE  108 (268)
T ss_dssp             CCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSSEEEEECSCC
T ss_pred             eCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEe-cCCCEEEEEECCCC
Confidence            445668999999999999987 4668999999753   22222 11 111111    27999875 24668999999999


Q ss_pred             CCCCEEEEEeecCC---CCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY---TTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~---~~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+...   ........|.|.+
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          109 RGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             GGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             cccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            99999999999642   2334455666665

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=3.5e-14  Score=90.20  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=68.9

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ..|+.-+....+++++.+|++|+|.|.+++  .+.+.|||..  ..|..+..   ......||.+.  .+....+|.|++
T Consensus         5 ~~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG--~~l~~~~~~~~~~~~~~r~~i~--~~g~~~~L~I~~   78 (112)
T 2e6q_A            5 SSGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNG--EELKSNEPEGQVEPGALRYRIE--QKGLQHRLILHA   78 (112)
T ss_dssp             CCSCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESS--CBCCSSCCCTTSCTTSCEEEEC--CBTTEEEEEEES
T ss_pred             ccCCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECC--EECccCcccccccccccEEEEE--eCCcEEEEEECC
Confidence            346666667778899999999999999997  6789999843  33321100   00001188875  234567999999


Q ss_pred             CCCCCCEEEEEeecCCCCeeEEEEeceeccc
Q psy14080         80 LQKRDNGTYECQAQPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~~  110 (113)
                      ++++|+|.|.|..-.  .....+.|.|++.-
T Consensus        79 v~~~D~G~Y~~~~~~--~~~ssA~L~V~~~p  107 (112)
T 2e6q_A           79 VKHQDSGALVGFSCP--GVQDSAALTIQESS  107 (112)
T ss_dssp             CCSTTCSEEEEEEET--TEEEEEEEEEECSS
T ss_pred             CCHHHCccEEEEEEC--CeeEEEEEEEeCCC
Confidence            999999999774422  23457899998753

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.57  E-value=8.9e-15  Score=102.47  Aligned_cols=97  Identities=10%  Similarity=0.013  Sum_probs=65.8

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-Eecce--E--EcCCC-CEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TSGVL--T--YTNDA-RFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~~~~--~--~~~~~-R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++....+++.+|++|+|+|.+.+.+.+.|.|||+..+   ..+ .....  .  ....+ ||.+..+  .... |+|.+
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~-L~I~~   80 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TDTE-LRLQV   80 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECC--SSSC-CEEEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeC--CCCe-EEEcc
Confidence            35556678999999999999998888889999997632   222 22110  0  01123 9988743  2233 99999


Q ss_pred             CCCCCCEEEEEeecCCC-------CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYT-------TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~-------~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+....       .......|.|.+
T Consensus        81 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~  116 (253)
T 3to4_D           81 ANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLE  116 (253)
T ss_dssp             ESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEES
T ss_pred             CChhhCeEEEEEEecCCCCcccceEECCCEEEEEec
Confidence            99999999999996321       222334666654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.57  E-value=2.6e-14  Score=96.92  Aligned_cols=94  Identities=16%  Similarity=0.095  Sum_probs=67.5

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ...+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.......  ....||.+..  ..+.++|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~   84 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAI   84 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeE
Confidence            778899999999999999988778899999753   22333221111  1247998764  4567899999999999999


Q ss_pred             EEEeecCCC-C-eeEEEEeceec
Q psy14080         88 YECQAQPYT-T-TSHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~~~-~-~s~~~~L~V~g  108 (113)
                      |+|.+.... . ....+.|.|.+
T Consensus        85 Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           85 YFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEcCCCceeCCCEEEEEcC
Confidence            999996432 2 22334566654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.57  E-value=2.7e-14  Score=103.88  Aligned_cols=97  Identities=7%  Similarity=0.036  Sum_probs=68.5

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++|+|+|.+.+.  +.+.|.|||+..+   ..+ +..   . ...  ..++||.+..+...+.++|+|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            3456789999999999999876  3578999998532   222 111   0 111  12579998765556789999999


Q ss_pred             CCCCCCEEEEEeecCCC-CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYT-TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~-~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+.... .....+.|.|.+
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEec
Confidence            99999999999996532 334456676663

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.57  E-value=5e-14  Score=93.56  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             ccCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          2 VAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         2 ~~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +..|+.+... ..++++.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ....|+.+..  +....+|.|.+++
T Consensus         4 ~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~~~   71 (197)
T 3lcy_A            4 SGEAPGIRKE-MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG--KEL-------IQSRKYKMSS--DGRTHTLTVMTEE   71 (197)
T ss_dssp             CCEEEEEEEC-CCCEEEETTSEEEEEEEEEEESCCEEEEEETT--EEE-------CCCSSEEEEE--SSSEEEEEEECCS
T ss_pred             cCCCCccccc-CCceEEeCCCcEEEEEEEecCCCCEEEEEECC--EEC-------CCCccEEEEe--CCCEEEEEEecCC
Confidence            3445555544 45789999999999999988888899999843  222       2456777763  3456799999999


Q ss_pred             CCCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         82 KRDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      .+|+|.|+|.+. ..+..+..+.|.|...
T Consensus        72 ~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~  100 (197)
T 3lcy_A           72 QEDEGVYTCIATNEVGEVETSSKLLLQAT  100 (197)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             ccCCEEEEEEEECCCCceeEEEEEEEEcC
Confidence            999999999995 4455666777777643

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.57  E-value=2.7e-14  Score=99.73  Aligned_cols=102  Identities=18%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCC----EEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKV----RVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~----~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ........+++.+|++|+|.|.+.+.+.+    .|.|||+..   ...+.......  ...+||.+..  ....++|.|.
T Consensus       135 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~  212 (253)
T 3uzq_A          135 VMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG--SRTDFTLTIN  212 (253)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             eEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC--CCCEEEEEEC
Confidence            44555667899999999999999987665    899999753   23333222222  1247888753  3567899999


Q ss_pred             cCCCCCCEEEEEeecCC--CCeeEEEEeceecccc
Q psy14080         79 FLQKRDNGTYECQAQPY--TTTSHSQNAPGLGDLL  111 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V~g~~~  111 (113)
                      +++.+|+|.|+|++...  ........|.|++...
T Consensus       213 ~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~  247 (253)
T 3uzq_A          213 PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE  247 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred             CCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence            99999999999999543  2445667788877543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.57  E-value=3.7e-14  Score=98.99  Aligned_cols=97  Identities=16%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-----CCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++....+++.+|++|+|+|.+.+.+     .+.|.|||+..   ...+.......  ...+||.+..  ..++++|+|.+
T Consensus        38 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~  115 (252)
T 3bkj_L           38 TQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTLRISR  115 (252)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred             EeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEEEECC
Confidence            4456778999999999999998876     58899999763   22333221111  1257998864  45688999999


Q ss_pred             CCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+.....  ....+.|.|.+
T Consensus       116 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          116 VEAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             CCGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             CCcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            999999999999964322  22334566654

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=5.3e-17  Score=112.53  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC----eEEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW----HILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~----~~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++.+|++|+|+|.+++.. ..|.|||+..+    .+++. +......++||.+..+..++.++|+|++++.+|
T Consensus         5 ~Q~p~~v~v~~G~~v~L~C~~s~~~-~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~D   83 (207)
T 1ymm_D            5 EEDPQALSIQEGENATMNCSYKTSI-NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAAD   83 (207)
T ss_dssp             ----CCCCCSSCCCCCBCCBCSSCE-EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTT
T ss_pred             EECCCEEEEeCCCCEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCccc
Confidence            3445567889999999999998766 78999998742    22222 211123468998865555678999999999999


Q ss_pred             CEEEEEeecCC---CC--eeEEEEeceecc
Q psy14080         85 NGTYECQAQPY---TT--TSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~---~~--~s~~~~L~V~g~  109 (113)
                      +|+|+|++...   ..  ......|.|++.
T Consensus        84 sg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~  113 (207)
T 1ymm_D           84 TASYFCATDTTSGTYKYIFGTGTRLKVLAN  113 (207)
T ss_dssp             CSCCEEEEEETTSCSCEEECC---------
T ss_pred             CceEEEEEEcCCCcceeeECCCEEEEEECC
Confidence            99999999642   11  123356777654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.56  E-value=3e-14  Score=99.21  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             eEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEe---cceEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTS---GVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~---~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..++.+|++++|.|.+.+.+  .+.|.|||+.++   . ++..   +...+  ..+.||.+..+.....++|.|.+++.+
T Consensus       131 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  210 (242)
T 2znx_A          131 PSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE  210 (242)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             cceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcC
Confidence            35689999999999998764  478999997532   1 1221   11111  126799987655567789999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+......-....|.|...
T Consensus       211 D~G~Y~C~a~~~~~fG~gt~l~v~~~  236 (242)
T 2znx_A          211 DTATYYCANXDGDYXGQGTLVTVSAA  236 (242)
T ss_dssp             GCEEEEEEETTSSCBCCCEEEEECCC
T ss_pred             cCEEEEEeccCCcccCCCeEEEEEec
Confidence            99999999965322223344555443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=2.8e-14  Score=98.92  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=70.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ......+++.+|++++|.|.+.+.+.+.|.|||+.++   ..+.. .... ...+.||.+.  .....++|.|.+++.+|
T Consensus       139 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D  216 (247)
T 2ghw_B          139 TQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGS--GSGTDFTLTISRLEPED  216 (247)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--CSSSEEEEEECSCCGGG
T ss_pred             EccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEe--cCCCeEEEEECcCCHHH
Confidence            4445677899999999999999888789999997532   22221 1111 1235799875  34567899999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEeceec
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      +|.|+|.+....  .......|.|+.
T Consensus       217 ~G~Y~C~a~~~~~~~~g~~t~l~V~~  242 (247)
T 2ghw_B          217 FAVYYCQQRSNWPPTFGQGTKVEVKS  242 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CEEEEEEEccCCCceEcCCEEEEECC
Confidence            999999996532  344566787773

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=1.1e-15  Score=96.78  Aligned_cols=99  Identities=17%  Similarity=0.259  Sum_probs=74.2

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCC--cEEEEEcc
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSD--DWNLQIKF   79 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~--~~~L~I~~   79 (113)
                      ..|+.|..  ...+.+.+|+++.|.|.+.+.+.+. |.|+|..  ..+..+     .+.||.+......+  ..+|.|.+
T Consensus        12 ~~~P~i~~--~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~--~~l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~   82 (122)
T 2cry_A           12 NGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKE--NVLESG-----TSGRYTVETISTEEGVISTLTISN   82 (122)
T ss_dssp             CSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSS--CEECSE-----EETTEEEEEEEETTEEEEEEECTT
T ss_pred             ecCCCccC--CCeEEEecCCCEEEEEEEeecCCCcEeEEEECC--EEccCC-----CCCCEEEEEecCCCceEEEEEEcC
Confidence            34666655  5677899999999999999998876 9999853  223211     24688774211122  55999999


Q ss_pred             CCCCCC-EEEEEee-cCCCCeeEEEEeceeccc
Q psy14080         80 LQKRDN-GTYECQA-QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        80 v~~~D~-G~Y~C~~-~~~~~~s~~~~L~V~g~~  110 (113)
                      ++.+|+ |.|.|.+ +..+..+..+.|.|.+..
T Consensus        83 v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           83 IVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             CCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence            999999 9999999 566888889999998753

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=9.4e-15  Score=89.47  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...+++.+|++++|.|.+.+.+ +.|.|+|...  .+       ..+.|+.+.      ..+|.|.+++.+|+|.|+|.+
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~--~~-------~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a   73 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGV--QL-------AESNRTRIT------GEEVEVQDSVPADSGLYACVT   73 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSS--BC-------CCCSSEEEC------SSEEEETTCCTTTCEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCE--EC-------CCCCcEEEE------CCEEEEccCCHHHCEEEEEEE
Confidence            4556788999999999999876 7999998541  11       134577653      349999999999999999999


Q ss_pred             c-CCCCeeEEEEeceeccc
Q psy14080         93 Q-PYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~g~~  110 (113)
                      . ..+..+..+.|.|.+..
T Consensus        74 ~n~~g~~~~~~~l~V~~~~   92 (99)
T 2cr3_A           74 SSPSGSDTTYFSVNVSDAL   92 (99)
T ss_dssp             EETTEEEEEEEEECBCSCC
T ss_pred             EeCCceEEEEEEEEEecCC
Confidence            4 55677888899987653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.56  E-value=2.8e-14  Score=89.84  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=63.0

Q ss_pred             ecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC-CCCcEEEEEccCCCCCCEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-GSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ....+.+.+|++++|.|.+.+.  +.+.+.|+|.... + ...  ......+....... .....+|.|.+++.+|+|.|
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK-H-QHK--KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY   89 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTT-C-CHH--HHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcc-c-CCc--eeeeeccccccCCceeeEEEEEEECCCCcccCEEE
Confidence            3445689999999999999984  4568999985431 1 000  00001111111000 01356899999999999999


Q ss_pred             EEeec-CCCCeeEEEEeceecccc
Q psy14080         89 ECQAQ-PYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        89 ~C~~~-~~~~~s~~~~L~V~g~~~  111 (113)
                      +|.+. ..+..+..+.|.|.+.-.
T Consensus        90 ~C~a~n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           90 TCAASSGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEC
T ss_pred             EEEEccCCCceEEEEEEEEeccCe
Confidence            99995 556778889999987643

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.56  E-value=2.3e-14  Score=98.72  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---Ce-EEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WH-ILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~-~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ......+++.+|++++|.|.+.+.+.+.|.|||+..   .. ++... ......++||.+..+...+.++|.|.+++.+|
T Consensus       131 ~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  210 (238)
T 2p1y_A          131 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD  210 (238)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGG
T ss_pred             EccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHH
Confidence            344567789999999999999988888999999763   22 22221 11122357998875556678899999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|.|+|.+..
T Consensus       211 ~G~Y~C~a~n  220 (238)
T 2p1y_A          211 SATYFCAAID  220 (238)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEee
Confidence            9999999954

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.56  E-value=5.5e-14  Score=86.97  Aligned_cols=95  Identities=19%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             ccCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEE--EEe-CCCCcEEEEEc
Q psy14080          2 VAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQV--IHT-DGSDDWNLQIK   78 (113)
Q Consensus         2 ~~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~--~~~-~~~~~~~L~I~   78 (113)
                      |..|+.|.....    ...|+.+.|.|.+.+.+.+.|.|+|.  +..+.       .+.|+..  ... ......+|.|.
T Consensus         1 V~~pP~i~~~~~----~~~~~~~~~~c~v~G~P~P~i~W~k~--g~~l~-------~~~~~~~~~~~~~~~~~~~~L~I~   67 (103)
T 1wwb_X            1 VHFAPTITFLES----PTSDHHWCIPFTVKGNPKPALQWFYN--GAILN-------ESKYICTKIHVTNHTEYHGCLQLD   67 (103)
T ss_dssp             CCCCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEET--TEEEC-------CCSSEEEEEEEECSSEEEEEEEEE
T ss_pred             CCCCCEEEeccC----ceECcEEEEEEEEEEeCCCEEEEEEC--CEECC-------CCCcEeEEEEecCCcEEEEEEEEC
Confidence            345777653322    24688999999999999999999983  33432       2334322  111 11124569999


Q ss_pred             cCCCCCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         79 FLQKRDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +++.+|+|.|.|.+ +..+..+..+.|.|.+.
T Consensus        68 ~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~   99 (103)
T 1wwb_X           68 NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEECCSCC
T ss_pred             CCCcccCEEEEEEEEeCCCcEeEEEEEEECCC
Confidence            99999999999999 56688899999999864

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.56  E-value=3.8e-14  Score=99.04  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=71.3

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .........+++.+|++++|.|.+.+.+.+ .|.|||+..   ...+.......  ...+||.+..  ....++|.|.++
T Consensus       142 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v  219 (257)
T 3gkz_A          142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG--SGTSYSLTISSM  219 (257)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             eEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEec--CCCEEEEEECCC
Confidence            344455566889999999999999987766 899999753   22232222111  1247888753  346789999999


Q ss_pred             CCCCCEEEEEeecCCC--CeeEEEEeceeccc
Q psy14080         81 QKRDNGTYECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +.+|+|.|+|++....  .......|.|+...
T Consensus       220 ~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          220 EAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             ChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence            9999999999996532  33455677776544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=2.7e-14  Score=100.24  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             ceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEE-Eec---ceEEc--CCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHIL-TSG---VLTYT--NDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l-~~~---~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+++.+|++|+|.|.+.+.+  .+.|.|||+..   ...+ ...   ...+.  .++||.+..+...+.++|+|.++++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            346899999999999998764  68899999752   2222 211   11111  2579998765556789999999999


Q ss_pred             CCCEEEEEeecCC
Q psy14080         83 RDNGTYECQAQPY   95 (113)
Q Consensus        83 ~D~G~Y~C~~~~~   95 (113)
                      +|+|.|+|.+...
T Consensus        88 ~DsG~Y~C~a~n~  100 (257)
T 1f3r_B           88 DDTGTYYCTRDLY  100 (257)
T ss_dssp             TCCEEEEEEEESS
T ss_pred             ccCEEEEEEEccc
Confidence            9999999999653

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.8e-15  Score=89.62  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .++++.+|++++|.|.+. .+.+.|.|||..  ..+       ..+.|+.+..  +....+|.|.+++.+|+|.|+|.+.
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g--~~~-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~   86 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDG--KKL-------SSSSKVRVEA--VGCTRRLVVQQAGQAEAGEYSCEAG   86 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETT--EEC-------CCCSSEEEEE--ETTEEEEEETTCCTTTCSCEEEEET
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECC--EEC-------CCCCCEEEEE--cCCEEEEEECCCCcccCEEEEEEcC
Confidence            467899999999999998 677899999843  222       2356887763  2345799999999999999999994


Q ss_pred             CCCCeeEEEEeceecc
Q psy14080         94 PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g~  109 (113)
                      .   .+..+.|.|.+.
T Consensus        87 ~---~~~~~~l~V~~p   99 (102)
T 2eo1_A           87 G---QQLSFRLQVAGQ   99 (102)
T ss_dssp             T---EECCEEEEEESC
T ss_pred             C---CcEEEEEEEeCC
Confidence            3   334467777653

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.55  E-value=6.7e-15  Score=99.65  Aligned_cols=99  Identities=12%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-------CCCEEEEEecCCC----eEEEecce----EEcCCCCEEEEEeCCCCcEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-------VKVRVSWVRRRDW----HILTSGVL----TYTNDARFQVIHTDGSDDWN   74 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-------~~~~V~W~k~~~~----~~l~~~~~----~~~~~~R~~~~~~~~~~~~~   74 (113)
                      .+..+.+++.+|++|+|+|.+...       +.+.|.|||....    .++.....    .....+||.+..+...++++
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            345667899999999999999854       4678999997642    12221110    01234799876433346789


Q ss_pred             EEEccCCCCCCEEEEEeecCCC-Ce----eEEEEeceec
Q psy14080         75 LQIKFLQKRDNGTYECQAQPYT-TT----SHSQNAPGLG  108 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~~~-~~----s~~~~L~V~g  108 (113)
                      |+|.+++.+|+|.|+|.+.... ..    +..+.|.|.+
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  122 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTA  122 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEEC
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEec
Confidence            9999999999999999996543 11    2357777765

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.55  E-value=2e-14  Score=102.08  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             ceEEEecCCcEEEEEEEcc--CCCCEEEEEecCC---CeEE-Eecc----eEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRD--IVKVRVSWVRRRD---WHIL-TSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~~---~~~l-~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+++  .....|.|||+..   ...+ ....    ...  ...+||.+..+...++++|+|++++
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            4578999999999999975  3457899999873   2222 2211    111  1257999886555678999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      .+|+|+|+|++.
T Consensus       111 ~~DsG~Y~C~~~  122 (267)
T 3u1s_H          111 ADDTAIYYCLTG  122 (267)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hhhCEEEEEEEC
Confidence            999999999996

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.55  E-value=8.3e-14  Score=92.98  Aligned_cols=95  Identities=12%  Similarity=0.009  Sum_probs=71.2

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+. ....++++.+|+++.|.|.+.+.+.+.+.|+|..  ..+.      ..+.|+.+... .++.++|.|.+++.+
T Consensus         3 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~~------~~~~~~~~~~~-~~~~~~L~i~~~~~~   72 (197)
T 2j8h_A            3 MAPHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQG--KEII------ADGLKYRIQEF-KGGYHQLIIASVTDD   72 (197)
T ss_dssp             CCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETT--EECC------CCSSSEEEEEE-TTTEEEEEECSCCGG
T ss_pred             CCCEEE-EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECC--EECc------cCCCcEEEEEc-CCCEEEEEECcCCHH
Confidence            355554 3446789999999999999998888999999843  2221      13467776542 345679999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      |+|.|.|.+. ..+..+..+.|.|..
T Consensus        73 d~G~Y~C~~~n~~g~~~~~~~l~V~~   98 (197)
T 2j8h_A           73 DATVYQVRATNQGGSVSGTASLEVEV   98 (197)
T ss_dssp             GCSEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             hCEEEEEEEEECCCceeEEEEEEEcC
Confidence            9999999995 445667778888765

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.55  E-value=5.2e-14  Score=98.18  Aligned_cols=82  Identities=16%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             ceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Ee--cc-eE---EcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TS--GV-LT---YTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~--~~-~~---~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ....+.+|++|+|.|.+.+.+  .+.|.|||+..+   ..+ ..  +. ..   ....+||.+..+.....++|+|.+++
T Consensus       142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            345689999999999998765  689999998532   112 11  10 00   02356999886666678899999999


Q ss_pred             CCCCEEEEEeecCC
Q psy14080         82 KRDNGTYECQAQPY   95 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~   95 (113)
                      .+|+|.|+|++...
T Consensus       222 ~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          222 AEDTAVYYCARYID  235 (256)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhhCEEEEEEEEcC
Confidence            99999999999653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.55  E-value=4.1e-14  Score=97.43  Aligned_cols=83  Identities=10%  Similarity=0.097  Sum_probs=61.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEE-ecce--E--EcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILT-SGVL--T--YTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~-~~~~--~--~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++....+++.+|++|+|+|. .+.+.+.|.|||+..+   ..+. ....  .  .....||.+.. ...+.++|+|.+++
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELAT   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCC
T ss_pred             eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCC
Confidence            34567789999999999999 6677889999997532   2222 1110  0  11256998864 34567899999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      .+|+|.|+|.+..
T Consensus        82 ~~DsG~Y~C~~~~   94 (238)
T 2p1y_A           82 PSQTSVYFCASGD   94 (238)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccCeeEEEEEEe
Confidence            9999999999964

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.55  E-value=1.6e-13  Score=92.37  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+.........+.+|+++.|.|.+.+.+.+.+.|+|.  +..+       ..+.|+.+... +....+|.|.+++.+|+
T Consensus       117 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~--~~~~-------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~  186 (212)
T 2r15_A          117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN--EKAL-------AQTDHCNLKFE-AGRTAYFTINGVSTADS  186 (212)
T ss_dssp             CEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEET--TEEE-------CCCSSEEEEEE-TTTEEEEEESSCCGGGC
T ss_pred             CcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEEC--CeEC-------ccCCCEEEEEc-CCCEEEEEEcCcchHHC
Confidence            34444556678899999999999999999999999984  3333       24567877642 34568999999999999


Q ss_pred             EEEEEee-cCCCCeeEEEEeceec
Q psy14080         86 GTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.|.|.+ +..+..+..+.|.|..
T Consensus       187 G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          187 GKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEEEc
Confidence            9999999 4567778888888864

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.55  E-value=1.7e-14  Score=103.35  Aligned_cols=97  Identities=9%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             ecceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEEe-c---ce-EE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILTS-G---VL-TY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~~-~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++|+|+|.+++.+  .+.|.|||+..   ...+.. .   .. ..  ..++||.+..+...+.++|+|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            34578999999999999998765  57899999863   222221 1   00 11  12479988754445689999999


Q ss_pred             CCCCCCEEEEEeecCCC----C--eeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYT----T--TSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~----~--~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+....    .  ....+.|.|..
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~  142 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSS  142 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEec
Confidence            99999999999996532    1  12234676665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.55  E-value=6.3e-14  Score=97.49  Aligned_cols=98  Identities=15%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC-----CCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .+.....+++.+|++|+|+|.+.+.+     .+.|.|||+.++   ..+.......  ..+.||.+..  +.+.++|+|.
T Consensus        41 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~  118 (254)
T 2c1o_A           41 MTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKIS  118 (254)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             EEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEEC
Confidence            44556778999999999999999876     488999997632   2332221111  1247998864  4567899999


Q ss_pred             cCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         79 FLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +++.+|+|.|+|.+.....  ....+.|.|.+
T Consensus       119 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A          119 RVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred             cCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence            9999999999999964321  22234555543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.55  E-value=5.8e-14  Score=98.19  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=69.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ........+++.+|++|+|.|.+.+.+. +.|.|||+.+   ...+.......  ..++||.+..  +...++|.|.+++
T Consensus       151 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~  228 (256)
T 3juy_B          151 VLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG--SGTDFTLTITRVE  228 (256)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred             EEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc--cCCEEEEEECCCC
Confidence            3455567789999999999999998765 8999999752   23333222111  1357998764  3467899999999


Q ss_pred             CCCCEEEEEeecCCC--CeeEEEEecee
Q psy14080         82 KRDNGTYECQAQPYT--TTSHSQNAPGL  107 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~--~~s~~~~L~V~  107 (113)
                      .+|+|.|+|.+....  .......|.|+
T Consensus       229 ~~DsG~Y~C~~~~~~~~~~g~gt~l~V~  256 (256)
T 3juy_B          229 PEDFALYYCQVYGASSYTFGQGTKLERK  256 (256)
T ss_dssp             GGGCSEEEEEECCSSCCEECCCEEEEEC
T ss_pred             HhHCEEEEEEEeeCCCceEcCCEEEEEC
Confidence            999999999996432  33445566553

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.54  E-value=1.2e-13  Score=100.83  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.++.+|++++|.|.+.+.+.+.|.|+|..++..+..+.  ...+.|+.+..  +....+|.|.+++.+|+|.|.|.+
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~--~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a   82 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKG--QHGSSSLHIKDVKLSDSGRYDCEA   82 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC----CCSSSSEEEEE--CSSEEEEEEESCCGGGCEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCc--CCCCCeEEEec--cCCcceEEEcccChhhCEEEEEEE
Confidence            55678999999999999999988999999964455553221  12367888763  346789999999999999999999


Q ss_pred             c-CCCCeeEEEEeceec
Q psy14080         93 Q-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~g  108 (113)
                      . ..+..+..+.|.|..
T Consensus        83 ~n~~g~~~~~~~l~V~~   99 (389)
T 2jll_A           83 ASRIGGHQKSMYLDIEY   99 (389)
T ss_dssp             ECSSCEEEEEEEEEEEE
T ss_pred             EeCCCCcceEEEEEEEe
Confidence            4 556778888888864

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=99.54  E-value=6.1e-15  Score=93.27  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             ecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEe--cce-----EEcCC----CCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTS--GVL-----TYTND----ARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~--~~~-----~~~~~----~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++.+.+.+|++|+|+|.+... ....|.|++.  ..+...  +..     ....+    +|..+.    +.+++|+|.|
T Consensus         5 ~p~~V~~~~G~sVtL~c~~~~~~~~~~i~W~~~--~~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~----~~~~SL~I~n   78 (111)
T 2pkd_A            5 EIFTVNGILGESVTFPVNIQEPRQVKIIAWTSK--TSVAYVTPGDSETAPVVTVTHRNYYERIHAL----GPNYNLVISD   78 (111)
T ss_dssp             CCEEEEEETTSCEEECCCCCTTCCEEEEEEESS--SEEEEEECCCSSSCCEEEECSGGGTTCEEEC----TTTCCEEECS
T ss_pred             CceEEEEEeCCCEEEeCccCCCCeeeEEEEecC--CEEEEEECCCCCCcceeEEeCCCcCCcEEEe----CCCEEEEECC
Confidence            3456788899999999998752 3358999852  222221  211     11123    455443    3588999999


Q ss_pred             CCCCCCEEEEEeecCCC---CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYT---TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~---~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|.|.+....   .....+.|.|.+
T Consensus        79 l~~~DsG~Y~c~i~~~~~~~~~~~~~~L~V~~  110 (111)
T 2pkd_A           79 LRMEDAGDYKADINTQADPYTTTKRYNLQIYR  110 (111)
T ss_dssp             CCGGGCEEEEEEEEESSTTSEEEEEEEEEEEC
T ss_pred             CCHHHCEEEEEEEEeCCCCceEEEEEEEEEEc
Confidence            99999999999995432   356789998864

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.54  E-value=5.4e-14  Score=106.30  Aligned_cols=97  Identities=11%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             ecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eec---c-eEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSG---V-LTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~---~-~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ...   . ...  ...+||.+..+..++.++|+|.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (475)
T 1iga_A            7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (475)
T ss_pred             cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence            45668899999999999998653  578999998632   222 211   0 001  12579998765456789999999


Q ss_pred             CCCCCCEEEEEeecCCC-------CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYT-------TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~-------~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|++....       .....+.|.|.+
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             CChhhCEEEEEEEeccCCCccceeeecCceEEEecc
Confidence            99999999999996432       233456777764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.54  E-value=3.1e-14  Score=98.84  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=61.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Ee---cceE-E--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TS---GVLT-Y--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~---~~~~-~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .....++.+|++++|.|.+.+.+  .+.|.|||+..+   ..+ ..   +... .  ...+||.+..+.....++|.|.+
T Consensus       137 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  216 (250)
T 3esu_F          137 QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSS  216 (250)
T ss_dssp             ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECC
Confidence            34557899999999999998765  689999998421   222 11   1111 1  12579998765446678999999


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                      ++.+|+|.|+|++..
T Consensus       217 v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          217 LTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccCEEEEEEEec
Confidence            999999999999974

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.54  E-value=4.4e-14  Score=97.12  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=63.4

Q ss_pred             eEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         15 ISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      +..+.+|+++.|.|.+.+. +.+.|.|||.  +..+.       .+.|+..    ..+..+|.|.+++.+|+|.|.|.+ 
T Consensus       125 ~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~--g~~l~-------~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~  191 (207)
T 3rbs_A          125 SWEVTGECNVLLKCKVANIKKETHIVWYKD--EREIS-------VDEKHDF----KDGICTLLITEFSKKDAGIYEVILK  191 (207)
T ss_dssp             EEEEETTTEEEEEEEEESCCTTCEEEEEET--TEEEC-------CCCCCCC----SSEEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CcEEcCCCcEEEEEEEeCCCCCCEEEEEEC--CEECC-------CCCceEc----CCCEEEEEECCCCcccCEEEEEEEE
Confidence            3788999999999999998 8899999983  33332       2345432    234568999999999999999999 


Q ss_pred             cCCCCeeEEEEeceec
Q psy14080         93 QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g  108 (113)
                      +..+..+..+.|.+.+
T Consensus       192 N~~G~~~~~~~L~~~~  207 (207)
T 3rbs_A          192 DDRGKDKSRLKLVDEA  207 (207)
T ss_dssp             ETTEEEEEEEEECCC-
T ss_pred             cCCCEEEEEEEEecCC
Confidence            5667888888888754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.54  E-value=2e-14  Score=102.37  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+....+++.+|++++|.|.+.+.+ +.|.|||+.+   ...+.. .... ...++||.+..  +...++|+|.+++.+|
T Consensus       166 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D  242 (282)
T 1qok_A          166 TQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG--SGTSYSLTISRMEAED  242 (282)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             ecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec--CCCEEEEEEccCChhH
Confidence            3445677899999999999999888 8999999753   222222 1111 11357998763  3467899999999999


Q ss_pred             CEEEEEeecCCC--CeeEEEEeceeccc
Q psy14080         85 NGTYECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        85 ~G~Y~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +|.|+|.+....  .......|.|.+..
T Consensus       243 sG~Y~C~a~~~~~~~fg~gt~l~V~~~~  270 (282)
T 1qok_A          243 AATYYCQQRSSYPLTFGAGTKLELKRAA  270 (282)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CEEEEEEEeeCCCceEeCCEEEEEeccc
Confidence            999999996432  34556788887754

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.54  E-value=9.2e-14  Score=98.29  Aligned_cols=98  Identities=10%  Similarity=0.039  Sum_probs=66.6

Q ss_pred             eEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEE-ec--c--eEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILT-SG--V--LTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~-~~--~--~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..++.+|++|+|.|.+.+.+  .+.|.|||+..   ...+. ..  .  ..+  ..++||.+..+.....++|.|.+++.
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  226 (264)
T 2gjj_A          147 PEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS  226 (264)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc
Confidence            35799999999999998765  37899999863   23332 11  0  011  12578888655556789999999999


Q ss_pred             CCCEEEEEeecCC----C--CeeEEEEeceeccccc
Q psy14080         83 RDNGTYECQAQPY----T--TTSHSQNAPGLGDLLM  112 (113)
Q Consensus        83 ~D~G~Y~C~~~~~----~--~~s~~~~L~V~g~~~~  112 (113)
                      +|+|+|+|.+...    .  .......|.|......
T Consensus       227 ~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~v~~~~~~  262 (264)
T 2gjj_A          227 EDSADYYCVRSGNYEEYAMDYWGQGTSVTVSSHHHH  262 (264)
T ss_dssp             GGCEEEEEEEECSGGGCSCCCBCCCEEEEEC-----
T ss_pred             ccCEEEEEEEecCCCCcceEEECCCEEEEEeccccc
Confidence            9999999999652    2  1345667888766543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.54  E-value=2.5e-13  Score=92.16  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC-C
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK-R   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~-~   83 (113)
                      |+.+.. ...++++.+|++++|.|.+.+.+.+.|.|+|.  +..+.      ..+.|+.+... .++..+|.|.+++. +
T Consensus         6 pP~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~--~~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~~   75 (212)
T 2yd1_A            6 PPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKN--GKKVS------GTQSRYTVLEQ-PGGISILRIEPVRAGR   75 (212)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEET--TEECC------TTSTTEEEEEE-TTTEEEEEESSCCTTT
T ss_pred             CCEEEc-CCCceEEecCCEEEEEEEEccCCCCeEEEEEC--CEECC------CCcceeEEEEc-CCCeEEEEEEecCCCC
Confidence            444444 45678999999999999999888889999984  22221      24678887642 34458999999999 9


Q ss_pred             CCEEEEEeecC-CCC-eeEEEEeceecc
Q psy14080         84 DNGTYECQAQP-YTT-TSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~-~~~-~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+.. .+. .+..+.|.|...
T Consensus        76 d~G~Y~C~~~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           76 DDAPYECVAENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             TCSEEEEEEECSSSCEEEEEEEEEEECT
T ss_pred             cCceEEEEEEeCCCCeEEeeEEEEEecc
Confidence            99999999954 455 677888888754

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.54  E-value=3.5e-14  Score=96.25  Aligned_cols=93  Identities=17%  Similarity=0.053  Sum_probs=65.4

Q ss_pred             cceEEEecCCcEEEEEEEccCC---CCEEEEEecCC-C--eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRD-W--HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~-~--~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ...+++.+|++|+|+|.+.+.+   .+.|.|||+.. .  ..+.......  ...+||.+..  ..+.++|+|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D   84 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTED   84 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccC
Confidence            7788999999999999999876   47899999753 2  2222211111  1257998764  3467899999999999


Q ss_pred             CEEEEEeecCCCC--eeEEEEecee
Q psy14080         85 NGTYECQAQPYTT--TSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~~~~~--~s~~~~L~V~  107 (113)
                      +|.|+|.+.....  ....+.|.|.
T Consensus        85 ~G~Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           85 EAIYFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             CEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CEEEEEEEecCchhhcCCCeEEEEe
Confidence            9999999965332  2233456553

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.54  E-value=8.6e-14  Score=97.59  Aligned_cols=101  Identities=9%  Similarity=0.043  Sum_probs=68.0

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe--c-ce-EE-cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS--G-VL-TY-TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~--~-~~-~~-~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .++....+++.+|++|+|.|.+.+. .+.|.|||+...   ..+..  + .. .. ...+||.+.. .....++|+|.++
T Consensus       140 v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v  217 (256)
T 3tf7_C          140 VTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR-TTQEDFFLTLESA  217 (256)
T ss_dssp             EEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC-CSSSBCEEEESSC
T ss_pred             EEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe-CCCCeEEEEECCC
Confidence            3445566788899999999999876 679999997632   22221  1 11 11 1257888764 2456789999999


Q ss_pred             CCCCCEEEEEeec-CCCC--eeEEEEeceecccc
Q psy14080         81 QKRDNGTYECQAQ-PYTT--TSHSQNAPGLGDLL  111 (113)
Q Consensus        81 ~~~D~G~Y~C~~~-~~~~--~s~~~~L~V~g~~~  111 (113)
                      +.+|+|.|+|++. ..+.  .-....|.|+.+..
T Consensus       218 ~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~~  251 (256)
T 3tf7_C          218 SPSQTSLYFCASSDAPGQLYFGEGSKLTVLELEH  251 (256)
T ss_dssp             CGGGCEEEEEEEEEETTEEEECCCEEEEEECGGG
T ss_pred             CHHHCEEEEEEecCCCCccEECCCeEEEEEcccc
Confidence            9999999999994 3221  22344566665443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.54  E-value=3.4e-14  Score=96.24  Aligned_cols=90  Identities=17%  Similarity=0.082  Sum_probs=65.5

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .+++.+|++|+|+|.+.  +.+.|.|||+..   ...+.. .... ....+||.+..  ..++++|.|.+++.+|+|.|+
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~   84 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYY   84 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEE
Confidence            78899999999999999  778999999742   233322 1111 11357998764  456889999999999999999


Q ss_pred             EeecCC-C--CeeEEEEeceec
Q psy14080         90 CQAQPY-T--TTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~-~--~~s~~~~L~V~g  108 (113)
                      |.+... +  ..+..+.|.|.+
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~~  106 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVLG  106 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEECC
T ss_pred             EEEecCCCceeECCCceEEEeC
Confidence            999543 3  344556777763

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.53  E-value=4.8e-14  Score=108.26  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=61.9

Q ss_pred             ecceEEEecCCcEEEEEEEccCC--C--CEEEEEecCCC---eE-EEecc---eEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV--K--VRVSWVRRRDW---HI-LTSGV---LTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~--~--~~V~W~k~~~~---~~-l~~~~---~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ....+++.+|++|+|+|.+.+.+  .  ..|.|||+..+   .. ++...   ...  ..++||.+..+..+++++|+|+
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            35678999999999999998643  2  68999998632   22 22211   111  1257999886555668999999


Q ss_pred             cCCCCCCEEEEEeecCC
Q psy14080         79 FLQKRDNGTYECQAQPY   95 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~   95 (113)
                      +++.+|+|+|+|++...
T Consensus        86 ~v~~~Dsg~Y~C~~~~~  102 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNP  102 (512)
T ss_pred             cCCHHHCEEEEEEEECC
Confidence            99999999999999653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=7.7e-14  Score=92.51  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             ceEEEecCCcEEEEEEEccCC-CCEEEEEecCC--CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRD--WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~--~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~   89 (113)
                      ....+.+|+++.|.|.+.+.+ .+.+.|+|..+  ..++..     ..++||.+..  +.+..+|.|.+++ .+|+|.|.
T Consensus        91 ~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~L~i~~v~~~~d~G~Y~  163 (184)
T 3b5h_A           91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN-----GSESRFFVSS--SQGRSELHIENLNMEADPGQYR  163 (184)
T ss_dssp             SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCT-----TGGGTEEEEE--ETTEEEEEECSCCTTTSSEEEE
T ss_pred             CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeec-----CCCCEEEEEe--cCCeeEEEEeeccccccCceEE
Confidence            566889999999999999888 78999999532  222211     1247888864  3456799999999 99999999


Q ss_pred             Eee-cCCCCeeEEEEeceec
Q psy14080         90 CQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.+ +..+..+..+.|.|++
T Consensus       164 C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          164 CNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEeCCCcceEEEEEEEec
Confidence            999 5667777889999876

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.53  E-value=5.8e-15  Score=103.64  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+....+++.+|++++|.|.+.+.+.+.|.|||+.++   ..+.. .... .....||.+..  +...++|+|.+++.+|
T Consensus       143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D  220 (257)
T 1f3r_B          143 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQPED  220 (257)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec--CCCEEEEEECCCChhh
Confidence            3445567899999999999999887789999997532   22222 1111 11257998753  3457899999999999


Q ss_pred             CEEEEEeecCCC-CeeEEEEeceecccc
Q psy14080         85 NGTYECQAQPYT-TTSHSQNAPGLGDLL  111 (113)
Q Consensus        85 ~G~Y~C~~~~~~-~~s~~~~L~V~g~~~  111 (113)
                      +|.|+|.+.... .......|.|++...
T Consensus       221 ~G~Y~C~a~n~~~~~g~gt~l~V~~~~~  248 (257)
T 1f3r_B          221 VATYFCYQYNNGYTFGAGTKLELKAAEQ  248 (257)
T ss_dssp             CSEEEEEEESSSEEECCCCEECCSSSCC
T ss_pred             CEEEEEEEeCCCCeECCCEEEEEeCCCc
Confidence            999999996533 233456788877543

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.53  E-value=2.6e-15  Score=95.82  Aligned_cols=92  Identities=17%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             eEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEec--ceEEc---CCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         15 ISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSG--VLTYT---NDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~--~~~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      .+.+.+|++|+|+|..+ ......|.|||+....+....  .....   -.+|+.+.    ..+.+|+|+|++.+|+|.|
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~----~~~~sL~I~nv~~~DsG~Y   88 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD----PQSGALYISKVQKEDNSTY   88 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEEC----TTTCCEEESSCCGGGCSEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEe----CCCceEEEeCCCHHHCeEE
Confidence            37899999999999874 333468999998652333221  11111   12466553    2466999999999999999


Q ss_pred             EEeecCCC--CeeEEEEeceeccc
Q psy14080         89 ECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        89 ~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +|.+....  ..+..++|.|.+.+
T Consensus        89 ~c~v~~~~~~~~~~~~~L~V~~~~  112 (121)
T 2edo_A           89 IMRVLKKTGNEQEWKIKLQVLDPV  112 (121)
T ss_dssp             EEEEEETTTEEEECCEECEEECCS
T ss_pred             EEEEEcCCCcEEEEEEEEEEECCC
Confidence            99996332  35667888887654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.53  E-value=8.6e-14  Score=98.66  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEE-ecc----eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILT-SGV----LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~-~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++++|.|.+.+.+  .+.|.|||+..   ...+. ...    ...  ..++||.+..+...+.++|.|.++
T Consensus       141 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  220 (276)
T 3auv_A          141 SGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSL  220 (276)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCC
Confidence            4567899999999999998765  58999999852   12221 111    011  135799987544456789999999


Q ss_pred             CCCCCEEEEEeecCC----C--CeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPY----T--TTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~----~--~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+...    .  .......|.|++.
T Consensus       221 ~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          221 RAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             CGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             ChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence            999999999999543    2  2334567777654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.52  E-value=1.5e-13  Score=84.13  Aligned_cols=98  Identities=11%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEecceEEcCCCCEEEEE-eCCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIH-TDGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~~v~   81 (113)
                      |+..+.....+.++.+|++++|.|.+.+.  +.+.+.|+|..  ..+.....  ....|+.... .......+|.|.+++
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~   84 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDN--EALQDAEM--ENYAHLRAQGGELMEYTTILRLRNVE   84 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETT--EECTTCEE--EEEEETTGGGSSCEEEEEEEEECSCC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCC--cccccccc--cceeeeeccCCCccccceEEEEeccc
Confidence            33444445667799999999999999854  35799999853  22211000  0000111000 000024699999999


Q ss_pred             CCCCEEEEEeec-CCCC-eeEEEEece
Q psy14080         82 KRDNGTYECQAQ-PYTT-TSHSQNAPG  106 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~-~s~~~~L~V  106 (113)
                      .+|+|.|+|.+. ..+. .+..+.|.|
T Consensus        85 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           85 FTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999995 4444 456677766

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.52  E-value=5.6e-14  Score=98.90  Aligned_cols=97  Identities=13%  Similarity=0.046  Sum_probs=66.9

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCC-----EEEEEecCCC---eEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKV-----RVSWVRRRDW---HILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~-----~V~W~k~~~~---~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .....+++.+|++++|.|.+.+.+.+     .|.|||+.++   ..+.. .... ....+||.+..  ....++|.|.++
T Consensus       126 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v  203 (256)
T 1nqb_A          126 QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRV  203 (256)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEc--cCCEEEEEECCC
Confidence            44566789999999999999987654     8999997532   22221 1111 11257998753  346789999999


Q ss_pred             CCCCCEEEEEeecCCC--CeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYT--TTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+....  .......|.|.+.
T Consensus       204 ~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          204 EAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             ChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            9999999999996532  2344556777643

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=99.92  Aligned_cols=103  Identities=13%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---eEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---HILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..+....+++.+|++|+|.|.+.+. +.+.|.|||+...   ..+.....  ....++||.+..+...+.++|+|.+++.
T Consensus       139 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  218 (259)
T 3omz_A          139 VTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQL  218 (259)
T ss_dssp             EECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCG
T ss_pred             eEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCCh
Confidence            3445566889999999999998864 6789999998632   22211110  0112479987644445678999999999


Q ss_pred             CCCEEEEEeecCC----C--CeeEEEEeceecccc
Q psy14080         83 RDNGTYECQAQPY----T--TTSHSQNAPGLGDLL  111 (113)
Q Consensus        83 ~D~G~Y~C~~~~~----~--~~s~~~~L~V~g~~~  111 (113)
                      +|+|.|+|+++..    .  ..-....|.|++...
T Consensus       219 ~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~~  253 (259)
T 3omz_A          219 EDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQ  253 (259)
T ss_dssp             GGCSEEEEEEESCSSTTCCCEECCCEEEEEEC---
T ss_pred             hHCEEEEEEEeCccCCCCceEECCCCEEEEeeCcc
Confidence            9999999999631    1  223455777776543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=89.47  Aligned_cols=101  Identities=14%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCC--CEEEEEeCCCCcEEEEE--cc
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDA--RFQVIHTDGSDDWNLQI--KF   79 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~--R~~~~~~~~~~~~~L~I--~~   79 (113)
                      .|+.+.. ...++++.+|++++|.|.+.+.+.+.|.|||..  ..+..+.    .+.  ++...  .++....|.|  .+
T Consensus         8 ~pP~i~~-~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~--~~~~~~~----~~~~~~~~~~--~~~~~~~~~i~~~~   78 (117)
T 2v9t_A            8 FPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGG--ERVETDK----DDPRSHRMLL--PSGSLFFLRIVHGR   78 (117)
T ss_dssp             EEEEEEE-CCCCEEECTTCCEEECCEEEEESCCEEEEEETT--EECCCTT----TCSSCSEEEC--TTSCEEESSCCCBT
T ss_pred             CCCeeEc-CCCCEEEcCCCcEEEEEECCccCCCeEEEEECC--EeccccC----CCCcceeEEe--cCCcEEEEEEEeCC
Confidence            3555554 356788999999999999999999999999953  2222110    111  22222  2223333333  37


Q ss_pred             CCCCCCEEEEEeec-CCCC-eeEEEEeceecccccC
Q psy14080         80 LQKRDNGTYECQAQ-PYTT-TSHSQNAPGLGDLLMH  113 (113)
Q Consensus        80 v~~~D~G~Y~C~~~-~~~~-~s~~~~L~V~g~~~~~  113 (113)
                      ++.+|+|.|+|.+. ..+. .+..+.|.|...-.||
T Consensus        79 v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~~~~~  114 (117)
T 2v9t_A           79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHH  114 (117)
T ss_dssp             TBCSSCEEEEEEEEETTEEEECCCEEEEEC------
T ss_pred             CCcCcCEEEEEEEEeCccceEeeeEEEEhhhhhhhh
Confidence            78999999999994 4443 4577888887776665

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.52  E-value=8e-14  Score=97.67  Aligned_cols=98  Identities=9%  Similarity=-0.008  Sum_probs=67.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecc---eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGV---LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~---~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .++....+++.+|++|+|+|.+.. +.+.|.|||+...   ..+....   ...  ...+||.+..+ +.++++|+|+++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v   83 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSA   83 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECcC
Confidence            345567789999999999999963 5689999998632   2232211   011  12579988642 356789999999


Q ss_pred             CCCCCEEEEEeecCC----CCeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPY----TTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~----~~~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+...    ........|.|.+
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  115 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTE  115 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEec
Confidence            999999999999653    1112334566654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.52  E-value=3.8e-14  Score=95.13  Aligned_cols=97  Identities=20%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             cceEEEecCCcEEEEEEEccCC----CCEEEEEecCCC------eEE-EecceEEcC-----CCCEEEEE-eCCCCcEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW------HIL-TSGVLTYTN-----DARFQVIH-TDGSDDWNL   75 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~------~~l-~~~~~~~~~-----~~R~~~~~-~~~~~~~~L   75 (113)
                      .+.+.+.+|++++|+|.+.+.+    .+.|.|+|....      .++ +.+......     .+|+.+.. +...++++|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3567899999999999998765    469999996521      222 223333321     56777642 123457899


Q ss_pred             EEccCCCCCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         76 QIKFLQKRDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      .|.+++.+|+|.|+|.+. ..+..+..+.|.|...
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~  121 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK  121 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC
Confidence            999999999999999995 4455677888888754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.52  E-value=1.9e-13  Score=95.93  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +..+.....++.+.+|++++|.|.+.+.+.+.|.|+|..  ..+       ....|+.+..  ..+..+|.|.+++.+|+
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~v~~~d~   73 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN--REI-------RPGGNYKMTL--VENTATLTVLKVTKGDA   73 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETT--EEC-------CSSSSEEEEE--ETTEEEEEESSCCGGGC
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECC--EEC-------cCCCcEEEEE--cCCEEEEEEecCCcccC
Confidence            334455567789999999999999998888899999843  222       2355666543  23568999999999999


Q ss_pred             EEEEEeec-CCCCeeEEEEeceec
Q psy14080         86 GTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      |.|.|.+. ..+..+..+.|.|..
T Consensus        74 G~Y~C~~~n~~g~~~~~~~l~V~~   97 (284)
T 2rik_A           74 GQYTCYASNVAGKDSCSAQLGVQE   97 (284)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCceEEEEEEEEccC
Confidence            99999995 445667778888765

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=99.52  E-value=7.1e-14  Score=106.17  Aligned_cols=98  Identities=14%  Similarity=0.132  Sum_probs=66.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccC----CCCEEEEEecCCC-----eEEEe-cceEEc-----CCCCEEEEEeCCCCcEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDW-----HILTS-GVLTYT-----NDARFQVIHTDGSDDWN   74 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~-----~~l~~-~~~~~~-----~~~R~~~~~~~~~~~~~   74 (113)
                      ......+++.+|++|+|+|.++..    ....|.|||+.++     .++.. +.....     -.+|+.+..+...++++
T Consensus       389 v~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s  468 (507)
T 3oai_A          389 VYTDREVHGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGS  468 (507)
T ss_dssp             EECCSEEEEETTCCEEECCEECCSSCCCSSCEEEEEEEETTCSCCEEEEEEETTEEEECTTCTTTTTEEECCBGGGTBCC
T ss_pred             EecCceEEEecCCcEEEeeEecCCCCCCCceEEEEEEcCCCCCceEEEEEecCCcccCCCCccccceEEEecCCCCCcee
Confidence            344567899999999999999532    2357999998632     12222 222221     14688877554567889


Q ss_pred             EEEccCCCCCCEEEEEeecCCCC-ee--EEEEecee
Q psy14080         75 LQIKFLQKRDNGTYECQAQPYTT-TS--HSQNAPGL  107 (113)
Q Consensus        75 L~I~~v~~~D~G~Y~C~~~~~~~-~s--~~~~L~V~  107 (113)
                      |+|++++.+|+|+|+|.+...+. ..  ..+.|.|.
T Consensus       469 L~I~~v~~~D~g~Y~C~v~~~~~~~~~~~~l~l~V~  504 (507)
T 3oai_A          469 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  504 (507)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEECCCCcccCeEEEEEEEcCCCcCCceeEEEEEEe
Confidence            99999999999999999976543 23  33455544

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.51  E-value=1.2e-13  Score=99.00  Aligned_cols=99  Identities=13%  Similarity=0.068  Sum_probs=68.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCC------EEEEEecCC---CeEEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKV------RVSWVRRRD---WHILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~------~V~W~k~~~---~~~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .+....+++.+|++++|.|.+.+.+.+      .|.|||+..   ...+.. ..... ..++||.+..  +...++|+|.
T Consensus       163 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~  240 (291)
T 2gki_A          163 SQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG--SGTDFTLTIS  240 (291)
T ss_dssp             ECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             EcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe--cCCEEEEEEC
Confidence            344557889999999999999877654      899999853   223322 11111 1267998753  3467899999


Q ss_pred             cCCCCCCEEEEEeecCCC--CeeEEEEeceeccc
Q psy14080         79 FLQKRDNGTYECQAQPYT--TTSHSQNAPGLGDL  110 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~--~~s~~~~L~V~g~~  110 (113)
                      +++.+|+|.|+|.+....  .......|.|++..
T Consensus       241 ~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          241 SVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHH  274 (291)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-
T ss_pred             CCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeE
Confidence            999999999999996432  22345567777653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.51  E-value=1.4e-13  Score=93.44  Aligned_cols=95  Identities=12%  Similarity=0.011  Sum_probs=66.7

Q ss_pred             ceEEEecCCcEEEEEEEccCC-----CCEEEEEecCCCeEEEe-cceEE------cCCCCEEEEEe-CCCCcEEEEEccC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV-----KVRVSWVRRRDWHILTS-GVLTY------TNDARFQVIHT-DGSDDWNLQIKFL   80 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~-----~~~V~W~k~~~~~~l~~-~~~~~------~~~~R~~~~~~-~~~~~~~L~I~~v   80 (113)
                      ..+.+.+|++++|+|.+.+.+     ...|.|+|.. ..+... +....      ...+|+.+..+ ...++++|.|.++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECC-cEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            457889999999999987554     3489999965 222221 11111      11367776422 1345789999999


Q ss_pred             CCCCCEEEEEeecCCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+...+..+..+.|.|...
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~  116 (222)
T 3sbw_C           88 KLQDAGVYRCMISYGGADYKRITVKVNAP  116 (222)
T ss_dssp             CGGGCEEEEEEEESSSEEEEEEEEEEEBC
T ss_pred             ccccCeEEEEEEEeCCCceeEEEEEEECC
Confidence            99999999999976666677888888753

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.51  E-value=3.5e-13  Score=91.56  Aligned_cols=95  Identities=22%  Similarity=0.267  Sum_probs=69.8

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-C
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-K   82 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~   82 (113)
                      .|+.+. ....++++.+|+++.|.|.+.+.+.+.|.|+|..  ..+        .+.|+......+....+|.|.+++ .
T Consensus         5 ~~P~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~--~~~--------~~~~~~~~~~~~~~~~~L~i~~v~~~   73 (212)
T 2yd6_A            5 TPPRFT-RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKG--KKV--------SNQRFEVIEFDDGSGSVLRIQPLRTP   73 (212)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT--EEC--------CCTTEEEEEEGGGTEEEEEECSCCTT
T ss_pred             CCCeEE-eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECC--cCC--------CCCceeEEEEcCCCceEEEEeccCCC
Confidence            345554 3456689999999999999998888899999843  222        234555433233456789999995 9


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|+|.|+|.+. ..+..+..+.|.|...
T Consensus        74 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           74 RDEAIYECVASNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEEEEECG
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEEEecc
Confidence            99999999995 4456677888888764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.51  E-value=1.1e-13  Score=103.95  Aligned_cols=83  Identities=10%  Similarity=0.101  Sum_probs=61.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Ee---cc-eEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TS---GV-LTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~---~~-~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ..   +. ...  ..++||.+..+...+.++|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            4457899999999999998765  678999998632   222 22   11 111  125799987655567899999999


Q ss_pred             CCCCCEEEEEeecCC
Q psy14080         81 QKRDNGTYECQAQPY   95 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~   95 (113)
                      +.+|+|.|+|.+...
T Consensus        87 ~~~D~G~Y~C~~~~~  101 (457)
T 1hzh_H           87 RSADTAVYYCARVGP  101 (457)
T ss_dssp             CGGGCEEEEEEECCC
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999643

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.51  E-value=1e-13  Score=87.69  Aligned_cols=89  Identities=11%  Similarity=-0.002  Sum_probs=62.1

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCC----CeEEEe--cce-EEc---CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRD----WHILTS--GVL-TYT---NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~----~~~l~~--~~~-~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ..+.+|++|.|.|.........+.|||...    ..+...  +.. ...   -.+|..+.     .+.+|.|+||+.+|+
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~-----~ngSL~I~nvt~~D~   84 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY-----PNASLLIQNIIQNDA   84 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEEC-----TTSCEEECSCCGGGC
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEe-----cCCcEEEccCcccCC
Confidence            478999999999985333345799999652    123222  111 111   24688876     366999999999999


Q ss_pred             EEEEEeecC-CC-CeeEEEEeceecc
Q psy14080         86 GTYECQAQP-YT-TTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~~-~~-~~s~~~~L~V~g~  109 (113)
                      |.|+|++.. .. ..+..+.|.|...
T Consensus        85 G~Ytc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           85 GFYTLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             EEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred             eEEEEEEEeCCCcEEEEEEEEEEecC
Confidence            999999954 33 4677889988753

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.51  E-value=2e-13  Score=94.04  Aligned_cols=86  Identities=14%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEE-Eec---ce-EE--cCCCCEEEEEeCCCCcEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHIL-TSG---VL-TY--TNDARFQVIHTDGSDDWNL   75 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l-~~~---~~-~~--~~~~R~~~~~~~~~~~~~L   75 (113)
                      +........++.+|++++|.|.+.+.+  .+.|.|||+..   ...+ ...   .. ..  ...+||.+..+.....++|
T Consensus       121 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  200 (240)
T 1moe_A          121 VQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYL  200 (240)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEE
Confidence            333445567899999999999999775  46899999742   2222 111   11 11  1357999876555677999


Q ss_pred             EEccCCCCCCEEEEEeec
Q psy14080         76 QIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~   93 (113)
                      .|.+++.+|+|.|+|.+.
T Consensus       201 ~I~~v~~~D~G~Y~C~a~  218 (240)
T 1moe_A          201 QLTSLTSEDTAVYYCAPF  218 (240)
T ss_dssp             EECSCCGGGCEEEEEEEC
T ss_pred             EECcCCHHHCEEEEEEEE
Confidence            999999999999999997

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.50  E-value=1.3e-13  Score=92.68  Aligned_cols=87  Identities=15%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCC---EEEEEecCCCeEEEec--ceE-----EcCCCCEEEEE-----eCCCCc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKV---RVSWVRRRDWHILTSG--VLT-----YTNDARFQVIH-----TDGSDD   72 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~---~V~W~k~~~~~~l~~~--~~~-----~~~~~R~~~~~-----~~~~~~   72 (113)
                      +.......+++.+|++|+|+|.+.+.+.+   .|.|+|.++..+....  ...     .....|+....     ....++
T Consensus         3 v~V~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T 4fmk_A            3 VRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRD   82 (225)
T ss_dssp             CSEECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCB
T ss_pred             EEEEeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCc
Confidence            33455667889999999999999887655   4899997644332211  000     01234544321     123457


Q ss_pred             EEEEEccCCCCCCEEEEEeecC
Q psy14080         73 WNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ++|+|.+++.+|+|.|+|.+..
T Consensus        83 ~sL~I~~v~~~D~G~Y~C~~~~  104 (225)
T 4fmk_A           83 ATLAFRGLRVEDEGNYTCEFAT  104 (225)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEccCCHHHCcceEEEEEe
Confidence            8999999999999999999954

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.50  E-value=3.3e-13  Score=89.65  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             eecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ..+.++.+.+|+++.|.|.+.+.+ .+.+.|+|.++..+.       ..+.|+.+... +....+|.|.+++.+|+|.|.
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~   78 (191)
T 1epf_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYK   78 (191)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEE-ETTEEEEEECSCCGGGCEEEE
T ss_pred             ecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc-------CCCCeEEEEEC-CCCceEEEEccCCcccCEEEE
Confidence            345667899999999999999876 789999984433222       13568877542 346789999999999999999


Q ss_pred             EeecCC--CCeeEEEEeceec
Q psy14080         90 CQAQPY--TTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~--~~~s~~~~L~V~g  108 (113)
                      |.+...  ...+..+.|.|..
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~   99 (191)
T 1epf_A           79 CVVTAEDGTQSEATVNVKIFQ   99 (191)
T ss_dssp             EEEEETTTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCcceEEEEEEEeec
Confidence            999543  3556777777754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.50  E-value=1.1e-13  Score=94.22  Aligned_cols=93  Identities=14%  Similarity=0.018  Sum_probs=64.0

Q ss_pred             cceEEEecCCcEEEEEEE-ccCC-CCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTV-RDIV-KVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v-~~~~-~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +..+++.+|++|+|+|.+ .+.+ .+.|.|||+..   ...+.......  ...+||.+..  ..+.++|+|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccC
Confidence            567889999999999995 4432 57899999763   22232211111  1256998764  45688999999999999


Q ss_pred             EEEEEeecCCCC---eeEEEEecee
Q psy14080         86 GTYECQAQPYTT---TSHSQNAPGL  107 (113)
Q Consensus        86 G~Y~C~~~~~~~---~s~~~~L~V~  107 (113)
                      |.|+|.+.....   ......|.|.
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~l~V~  109 (216)
T 2xzc_L           85 ADYYCGTWDSSLNPVFGGGTKLEIK  109 (216)
T ss_dssp             EEEEEEEECTTSCEEEBCCEEEEEC
T ss_pred             EEEEEEEEeCCCcceECCCEEEEEc
Confidence            999999965432   2334456664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.50  E-value=3e-13  Score=92.67  Aligned_cols=93  Identities=11%  Similarity=0.047  Sum_probs=60.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCC---CEEEEEecCCCeE-E-EecceEEc------CCCCEEEEEe-CCCCcEEEEEccCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDWHI-L-TSGVLTYT------NDARFQVIHT-DGSDDWNLQIKFLQ   81 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~~~-l-~~~~~~~~------~~~R~~~~~~-~~~~~~~L~I~~v~   81 (113)
                      ..+++.+|++|+|+|.+.+.+.   ..|.|+|.+.... . +.+.....      -..|+..... ...++++|+|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            3478999999999999976543   3799999764332 2 22211111      1246665421 13467899999999


Q ss_pred             CCCCEEEEEeecC-CCCeeEEEEece
Q psy14080         82 KRDNGTYECQAQP-YTTTSHSQNAPG  106 (113)
Q Consensus        82 ~~D~G~Y~C~~~~-~~~~s~~~~L~V  106 (113)
                      .+|+|.|+|.+.. .+..+..+.+.+
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~  117 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKV  117 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEee
Confidence            9999999999954 334444444443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.49  E-value=1.6e-13  Score=92.39  Aligned_cols=89  Identities=12%  Similarity=0.008  Sum_probs=64.3

Q ss_pred             cceEEEecCCcEEEEEEEccCCC-----CEEEEEecCCCeEEEecceEEcCCCCEEEEEe-CCCCcEEEEEccCCCCCCE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK-----VRVSWVRRRDWHILTSGVLTYTNDARFQVIHT-DGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~-----~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G   86 (113)
                      ...+++.+|+++.|+|.+.+.+.     +.|.|+|.+.. ..       ...+|+.+..+ ...++++|.|.+++.+|+|
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~-~~-------~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G   80 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVEND-TS-------LQSERATLLEEQLPLGKALFHIPSVQVRDSG   80 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC---CC-------CBCSSCEECGGGGGGTEEEEEECSCCGGGCE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCc-cc-------ccCCceEEeeccccCCeeEEEECCCCHHHCc
Confidence            34678999999999999988765     78999993321 11       12457766421 1125689999999999999


Q ss_pred             EEEEeecC-CCCeeEEEEeceecc
Q psy14080         87 TYECQAQP-YTTTSHSQNAPGLGD  109 (113)
Q Consensus        87 ~Y~C~~~~-~~~~s~~~~L~V~g~  109 (113)
                      .|.|.+.. ....+..+.|.|.+.
T Consensus        81 ~Y~C~~~~~~~~~~~~~~l~V~~~  104 (202)
T 3bp6_B           81 QYRCLVICGAAWDYKYLTVKVKAS  104 (202)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             EEEEEEEeCCCcceEEEEEEecCC
Confidence            99999954 344577888888764

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.49  E-value=6.1e-14  Score=87.30  Aligned_cols=93  Identities=14%  Similarity=0.036  Sum_probs=61.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..+...+.. .+.+|++|+|.|.....+ ..+.|||..  ..+..        .|+.    ......+|.|.+++.+|
T Consensus         4 ~kP~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~~~w~k~g--~~~~~--------~~~~----~~~~~~~l~I~~v~~~d   67 (105)
T 2vsd_A            4 PQPSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AWVQLWLNG--TLRFD--------KEKD----KEQDAAEFSFAVTNLED   67 (105)
T ss_dssp             CCCEEEEESCS-SCCTTCEEEEEEECCSSC-EEEEEEETT--EEEEE--------EEEC----TTCSEEEEEEECCSGGG
T ss_pred             CCCEEEeCCCC-CcCcCCCEEEEEEcCCCC-cEEEEEECC--cccee--------eecc----CCCCEEEEEECCCCHHH
Confidence            55555555544 789999999999998653 567899843  22211        1211    23356799999999999


Q ss_pred             CEEEEEeecC-C----CCeeEEEEeceecccccC
Q psy14080         85 NGTYECQAQP-Y----TTTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        85 ~G~Y~C~~~~-~----~~~s~~~~L~V~g~~~~~  113 (113)
                      +|.|+|.+.. .    ...|..+.|.|.|..+.|
T Consensus        68 sG~Y~C~~~n~~~~~~s~~Sdpl~L~V~~~~~~~  101 (105)
T 2vsd_A           68 AGTYQCRYQVSEPLWTSNQSDPVELVLTIEGRHH  101 (105)
T ss_dssp             CEEEEEEEEEETTEEECCCCCCEEECCC------
T ss_pred             CeEEEEEEEcCCCCcccCCCCCEEEEEEEecccc
Confidence            9999999953 2    345788999999988765

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.49  E-value=2.1e-14  Score=96.06  Aligned_cols=90  Identities=16%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEc----CCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYT----NDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~----~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      .+.+.+.+|++|+|+|.+.. +.+.|.|+|... .+.........    -.+|+.+.    ..+.+|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~-~i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~DsG~Y   75 (171)
T 1ccz_A            2 SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDEDEY   75 (171)
T ss_dssp             EEEEEEETTCCEEECCCCSS-CCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGCEEE
T ss_pred             ccEEEEEcCCCEEEcCCCCC-CcceEEEEeCCc-EEEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhCceE
Confidence            35678999999999999864 778999998643 33322111111    13466653    2456999999999999999


Q ss_pred             EEeecCCCCeeEEEEeceecc
Q psy14080         89 ECQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        89 ~C~~~~~~~~s~~~~L~V~g~  109 (113)
                      .|.+..... +..++|.|.+.
T Consensus        76 ~C~~~n~~~-~~~~~L~V~~~   95 (171)
T 1ccz_A           76 EMESPNITD-TMKFFLYVLEM   95 (171)
T ss_dssp             EEECTTCCS-CEEEEEEEECC
T ss_pred             EEEEeCCCC-cEEEEEEEECc
Confidence            999964333 77788988764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.49  E-value=4.1e-13  Score=95.21  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+.......+++.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ..+.|+.+.. .+.+..+|.|.+++.+|+
T Consensus       222 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~-------~~~~~~~~~~-~~~~~~~L~i~~v~~~d~  291 (317)
T 2y25_A          222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE--KAL-------ASDDHCNLKF-EAGRTAYFTINGVSTADS  291 (317)
T ss_dssp             CEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESS--SEE-------CCCSSEEECC-BTTTEEEEEEBSCCSTTC
T ss_pred             CcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECC--EeC-------CCCCcEEEEE-cCCCEEEEEECCCCHHHC
Confidence            444555566789999999999999999898999999843  222       2456777653 224557999999999999


Q ss_pred             EEEEEee-cCCCCeeEEEEeceec
Q psy14080         86 GTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.|.|.+ +..+..+..+.|.|..
T Consensus       292 G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          292 GKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEEc
Confidence            9999999 5667788889998874

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.49  E-value=5e-13  Score=85.91  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEE--cCCCCEEEEE-eCCCCcEEEEEccC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTY--TNDARFQVIH-TDGSDDWNLQIKFL   80 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~--~~~~R~~~~~-~~~~~~~~L~I~~v   80 (113)
                      .|+.++. ...++++.+|++++|.|.+.+.+.+.|.|+|.......... ...  ....|+.+.. .......+|.|.++
T Consensus        20 ~pP~~~~-~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           20 HMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS-QLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             -CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCE-ECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCeEEc-CCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccce-eecccCcccceEEecccccccceEEEECCC
Confidence            4555544 45778999999999999999999999999995421100000 000  0123555432 12234679999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +.+|+|.|+|.+..
T Consensus        98 ~~~D~G~Y~C~a~N  111 (137)
T 3qr2_A           98 VEEDTGTYECRASN  111 (137)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccCEEEEEEEEe
Confidence            99999999999953

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.49  E-value=1.9e-13  Score=90.86  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=69.4

Q ss_pred             ccCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          2 VAAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         2 ~~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .+.|+.+.. ....+.+.+|++++|.|.+.+.+.+.+.|+|.. . .+..     ....|+.+..  ..+..+|.|.+++
T Consensus         2 ~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~-~~~~-----~~~~~~~~~~--~~~~~~L~i~~~~   71 (194)
T 2a38_A            2 TTQAPTFTQ-PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDG-Q-VIST-----STLPGVQISF--SDGRAKLTIPAVT   71 (194)
T ss_dssp             CCEEEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEESS-S-BCCT-----TTSTTCEEEE--ETTEEEEEESSCC
T ss_pred             CCCCCeEEc-cCCceEEECCCEEEEEEEEEecCCCEEEEEECC-E-Eccc-----ccCCceEEEe--CCCEEEEEECCCC
Confidence            344555554 446689999999999999998888899999843 2 2211     1124666543  2457899999999


Q ss_pred             CCCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      .+|+|.|.|.+. ..+..+..+.|.|.+
T Consensus        72 ~~d~G~Y~C~~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           72 KANSGRYSLKATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cccCEEEEEEEEcCCceEeEEEEEEEcc
Confidence            999999999995 445556667777763

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=2.2e-13  Score=81.85  Aligned_cols=79  Identities=10%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ...+...++.+|+++.|.|.+.+.+.+.+.|||..  ..+.                  .....+|.|.+++.+|+|.|+
T Consensus         7 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~------------------~~~~~~L~i~~v~~~d~G~Y~   66 (91)
T 3bfo_A            7 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE--LPLT------------------HETKKLYMVPYVDLEHQGTYW   66 (91)
T ss_dssp             EECCCCEEECTTSCEEEECEEECSSCCEEEEEETT--EECT------------------TCCSSEEEESSCCGGGCEEEE
T ss_pred             EECCCccEecCCCcEEEEEEeccCCCCEEEEEcCC--eeCC------------------cCCCCeEEECCCCHHhCEEEE
Confidence            33455678999999999999999888999999842  2211                  112348999999999999999


Q ss_pred             EeecC-CCC-eeEEEEeceec
Q psy14080         90 CQAQP-YTT-TSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~-~~~-~s~~~~L~V~g  108 (113)
                      |.+.. .+. .+..+.|.|.+
T Consensus        67 C~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           67 CHVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             EEEECSSCEEECCCEEEEEC-
T ss_pred             EEEEcCCCCEEeeeEEEEEeh
Confidence            99954 343 34567777764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.48  E-value=2.2e-13  Score=101.75  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEec---ce-EE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTSG---VL-TY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~~---~~-~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   . ++...   .. ..  ...+||.+..+...+.++|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            4557899999999999998753  578999998632   1 22211   00 01  124799987655567899999999


Q ss_pred             CCCCCEEEEEeecCCC-C---eeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYT-T---TSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~-~---~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+.... .   ....+.|.|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            9999999999996542 2   23345676663

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.48  E-value=3.5e-13  Score=87.35  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC-----CCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-----GSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      .+..+.|.|.+.+.+.+.|.|+|.  +..|.       .++|+.+....     ....++|+|.+++.+|+|.|+|.+ +
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~kn--G~~l~-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N   84 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFN--GSVLN-------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEET--TEECC-------CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEEC--CEECC-------CCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEE
Confidence            578999999999999999999983  44432       34555443211     113579999999999999999999 6


Q ss_pred             CCCCeeEEEEeceecc
Q psy14080         94 PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g~  109 (113)
                      ..+..+..+.|.|+..
T Consensus        85 ~~G~~~~t~~l~v~~~  100 (126)
T 1he7_A           85 PFGQASASIMAAFMDN  100 (126)
T ss_dssp             TTEEEEEEEEECCCSC
T ss_pred             CCCeEEEEEEEEEEcC
Confidence            7788888999988753

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.48  E-value=5.2e-13  Score=94.91  Aligned_cols=94  Identities=24%  Similarity=0.297  Sum_probs=68.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC-C
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK-R   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~-~   83 (113)
                      |+.+. ....++++.+|++++|.|.+.+.+.+.|.|+|..  ..+        ...|+......+....+|.|.+++. +
T Consensus         6 ~P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g--~~i--------~~~~~~~~~~~~~~~~~L~i~~~~~~~   74 (304)
T 2yd9_A            6 PPRFI-KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKG--KKV--------NSQRFETIEFDESAGAVLRIQPLRTPR   74 (304)
T ss_dssp             CCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEC-----------------CTTEEEEEETTTTEEEEEECSCCTTT
T ss_pred             CCeee-ecCCceEecCCCeEEEEEEEEEeCCCeEEEEECC--EEC--------CCCceEEEEecCCCceEEEEecccccC
Confidence            44444 4456789999999999999998888899999843  222        2457776543444458999999998 9


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|+|.+. ..+..+..+.|.|...
T Consensus        75 D~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           75 DENVYECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             TCSEEEEEEECSSCEECCEEEEEEECG
T ss_pred             CCeEEEEEEECCCCeEEEEEEEEEecc
Confidence            9999999995 4455667788888654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=5.3e-14  Score=106.39  Aligned_cols=92  Identities=18%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+.+.....+++.+|++|+|.|.+.+.|.+.|.|+|.... +...     ....|+.+.     .+.+|.|.+++.+|+
T Consensus       385 P~i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~-~~~~-----~~~~~~~~~-----~~~~L~i~~v~~~d~  453 (477)
T 2id5_A          385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKH-LVSA-----KSNGRLTVF-----PDGTLEVRYAQVQDN  453 (477)
T ss_dssp             EEESCCSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSC-BC------------CEEC-----TTSCEEESSCCSTTC
T ss_pred             ccccccccccEEEeCCCeEEEEEeccccCCCEEEEEECCcc-cccc-----CCCceEEeC-----CCCEEEEeeCChHHC
Confidence            34444455778999999999999999999999999985432 2110     134577654     234799999999999


Q ss_pred             EEEEEee-cCCCCeeEEEEeceec
Q psy14080         86 GTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        86 G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.|+|.+ +..+..+..+.|.|.|
T Consensus       454 G~Y~C~a~N~~g~~~~~~~l~V~~  477 (477)
T 2id5_A          454 GTYLCIAANAGGNDSMPAHLHVRS  477 (477)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEeC
Confidence            9999999 5667788889999875

>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28 homodimer, immune system-signaling protein comple; HET: NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1

Probab=99.48  E-value=2.7e-13  Score=89.38  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCC---EEEEEecCCC--eEE-Eecc--e--EEcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKV---RVSWVRRRDW--HIL-TSGV--L--TYTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~---~V~W~k~~~~--~~l-~~~~--~--~~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++ ...+.+.+|+ |+|.|.+......   .++||||.++  .++ ..++  .  ......++.......++.++|+|.+
T Consensus         8 tQ-p~~l~~~~G~-VtL~C~y~~~~~~~e~~~~WYrq~pg~~~~l~~~~~~~~~~~~~~~~~~~~~~s~s~~s~sLtIs~   85 (140)
T 1yjd_C            8 KQ-SPMLVAYDNA-VNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQN   85 (140)
T ss_dssp             EC-CSEEECBTTB-EEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEES
T ss_pred             EC-CCeEEEeCCE-EEEEEECCCCCccceeEEEEEecCCCCceEEEEecCccccccccCCCCceEEeeccCCEEEEEECC
Confidence            44 5667889999 9999999654443   5999999743  222 2111  1  1122224444433567899999999


Q ss_pred             CCCCCCEEEEEeecC-C-C-C----eeEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQP-Y-T-T----TSHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~-~-~-~----~s~~~~L~V~g~  109 (113)
                      ++.+|+|+|+|++.. . | .    ......|.|++.
T Consensus        86 l~~~Dta~YfCa~~~~~ppp~~~~~~g~GT~l~V~e~  122 (140)
T 1yjd_C           86 LYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVKGK  122 (140)
T ss_dssp             CCGGGCEEEEEEEEEEESSSCEEBCCCCCEEEECC--
T ss_pred             CChhhCEEEEEEEEecCCCceeeeecCCCEEEEEEec
Confidence            999999999999953 1 2 1    224556666654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.47  E-value=3.1e-13  Score=93.78  Aligned_cols=80  Identities=16%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             eEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---e-EEEecc----eEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---H-ILTSGV----LTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~-~l~~~~----~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ...+.+|++|+|.|.+.+.+  .+.|.|||+..+   . ++....    ..+  ..++||.+..+...+.++|.|.+++.
T Consensus       136 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  215 (247)
T 1svz_A          136 PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN  215 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence            34699999999999998764  568999998632   1 221110    011  12579988754455678999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|.|+|.+..
T Consensus       216 ~DsG~Y~C~a~n  227 (247)
T 1svz_A          216 EDTATYFCVRDR  227 (247)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hHCEEEEEEEec
Confidence            999999999964

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.47  E-value=6.3e-13  Score=89.12  Aligned_cols=94  Identities=14%  Similarity=0.018  Sum_probs=68.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeE--EEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHI--LTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~--l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      ......+++.+|+++.|.|.+.+.+.+.|.|+|......  ...+.. ......|+.+.      ..+|.|.+++.+|+|
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~------~~~L~i~~v~~~D~G   78 (212)
T 1f97_A            5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS------SSGITFSSVTRKDNG   78 (212)
T ss_dssp             ECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE------TTEEEESCCCGGGCE
T ss_pred             EecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee------ceeEEEcccCcccCe
Confidence            345567899999999999999988888999999764421  111111 11235788775      379999999999999


Q ss_pred             EEEEeecC-CC--CeeEEEEeceecc
Q psy14080         87 TYECQAQP-YT--TTSHSQNAPGLGD  109 (113)
Q Consensus        87 ~Y~C~~~~-~~--~~s~~~~L~V~g~  109 (113)
                      .|.|.+.. .+  ..+..+.|.|...
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~l~V~~~  104 (212)
T 1f97_A           79 EYTCMVSEEGGQNYGEVSIHLTVLVP  104 (212)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEEEBC
T ss_pred             EEEEEEEccCCCcccEEEEEEEEEcC
Confidence            99999954 22  4567788888654

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.47  E-value=4.4e-14  Score=100.70  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             EEEecCCcEEEEEEEcc-CC-CCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         16 STGFLAVFSYSDKTVRD-IV-KVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~-~~-~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +++.+|++|+|.|.+.+ .. .+.+.|||+.++   ..+......  ....+||.+..  +...++|+|.+++.+|+|+|
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y  226 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR--SGNTASLTITGLQPEDEADY  226 (280)
T ss_dssp             EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE--ETTEEEEEECSCCGGGCSEE
T ss_pred             EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCCHHHCEEE
Confidence            88999999999999987 33 478999998642   222211111  12357998864  35678999999999999999


Q ss_pred             EEeecCCC----CeeEEEEeceec
Q psy14080         89 ECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      +|.+....    .....+.|.|.+
T Consensus       227 ~C~~~~~~~~~~~~g~~t~l~V~~  250 (280)
T 3fku_X          227 YCSTWDSSLSAVVFGGGTKLTVLG  250 (280)
T ss_dssp             EEEEEETTTTEEEEBCCCEEEEC-
T ss_pred             EEEEecCCCCceEECCCEEEEECC
Confidence            99995432    233445666654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.47  E-value=5.2e-14  Score=97.60  Aligned_cols=101  Identities=12%  Similarity=0.054  Sum_probs=65.9

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCC-----EEEEEecCCC---eEEEe---cceE--EcCCCCEEEEEeCCCCcE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKV-----RVSWVRRRDW---HILTS---GVLT--YTNDARFQVIHTDGSDDW   73 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-----~V~W~k~~~~---~~l~~---~~~~--~~~~~R~~~~~~~~~~~~   73 (113)
                      .+.......+++.+|++|+|+|.+.+.+.+     .|.|+|....   .++.+   +...  +....|+... ....+++
T Consensus         4 ~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   82 (248)
T 3pv7_A            4 KVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPW-RLKSGDA   82 (248)
T ss_dssp             EEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHH-HHTTTBC
T ss_pred             EEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEec-cCCCCcE
Confidence            344455667889999999999999876544     4999997532   12111   1110  1111222111 1234677


Q ss_pred             EEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080         74 NLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLG  108 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g  108 (113)
                      +|.|.+++.+|+|.|+|.+... ...+..+.|.|.+
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  118 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA  118 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEec
Confidence            8999999999999999999543 4556778888875

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.47  E-value=3.4e-13  Score=89.61  Aligned_cols=85  Identities=19%  Similarity=0.098  Sum_probs=66.6

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ......+.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ..+.|+.+..  +...++|.|.+++.+|+|.|+|.
T Consensus       109 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~  177 (194)
T 2a38_A          109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDG--AEI-------QSSLDFQISQ--EGDLYSLLIAEAYPEDSGTYSVN  177 (194)
T ss_dssp             CCCCEEECTTEEEEEEEEEEEESCCEEEEEETT--EEC-------CCSSSEEEEE--ETTEEEEEEEEECGGGCEEEEEE
T ss_pred             CCccEEEcCCCEEEEEEEEEEecCCeEEEEECC--EEC-------CCCCcEEEEE--cCCEEEEEECCCChhcCeEEEEE
Confidence            344678899999999999998888899999843  222       2356777653  23567999999999999999999


Q ss_pred             e-cCCCCeeEEEEecee
Q psy14080         92 A-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~  107 (113)
                      + +..+..+..+.|.|+
T Consensus       178 a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          178 ATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEeCCCceEEEEEEEEC
Confidence            9 456777788888774

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.47  E-value=4.3e-13  Score=91.30  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=70.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.  ...++.+.+|++++|.|.+.+.+.+.|.|+|.  +..+..     ....|+.+..  .....+|.|.+++.+|
T Consensus        19 ~P~~~--~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~--g~~l~~-----~~~~~~~~~~--~~~~~~L~i~~~~~~d   87 (215)
T 3mtr_A           19 APKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRD--GQLLPS-----SNYSNIKIYN--TPSASYLEVTPDSEND   87 (215)
T ss_dssp             EEEEE--CCSEEEECTTCCEEEEEEEEEESCCEEEEEET--TEESSC-----SSSCSEEEEE--ETTEEEEEECCCSGGG
T ss_pred             CCccc--CCceEEEECCCCEEEEEEEeecCCCEEEEEEC--CeECCC-----CCCccEEEec--CCCeeEEEEecCChhh
Confidence            44553  44568899999999999999999899999984  333321     1236777763  2357799999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceec
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      +|.|.|.+. ..+..+..+.|.|.+
T Consensus        88 ~G~Y~C~a~n~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           88 FGNYNCTAVNRIGQESLEFILVQAD  112 (215)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CeEEEEEEEECCCceEEEEEEEECC
Confidence            999999994 556777778888764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.47  E-value=7.6e-13  Score=93.61  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=63.3

Q ss_pred             EEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         16 STGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ..+.+|+++.|.|.+.+.+.+ .+.|+|.  +..+.       .++|+.+.    .+..+|.|.+++.+|+|.|.|.+ +
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~--g~~~~-------~~~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~N  297 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKD--EREIS-------VDEKHDFK----DGICTLLITEFSKKDAGIYEVILKD  297 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEET--TEEEE-------EECCC--------CEEEEEECSCSGGGCEEEEEEEES
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeC--CEECC-------CCCcEEEE----CCEEEEEECcCCHHHCEEEEEEEEc
Confidence            688999999999999998877 9999983  33332       24566654    24679999999999999999999 5


Q ss_pred             CCCCeeEEEEeceec
Q psy14080         94 PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g  108 (113)
                      ..+..+..+.|.|+|
T Consensus       298 ~~G~~~~~~~l~i~~  312 (312)
T 2y23_A          298 DRGKDKSRLKLVDEA  312 (312)
T ss_dssp             TTCCEEEEEEECSCC
T ss_pred             CCCceeeeeEEEecC
Confidence            668888899998875

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.46  E-value=7.4e-13  Score=90.95  Aligned_cols=82  Identities=11%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             cceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.++.+.+|+++.|.|.+.. .+.+.|.|||.  +..+.       .++|+.+..+...+..+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kn--g~~l~-------~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~   79 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN--EKEIF-------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ   79 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCCEEEEEET--TEEEC-------SSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCCEEEEEEC--CEECc-------cCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence            34688999999999999974 58899999983  44432       4567777654445677999999999999999999


Q ss_pred             ecCCCCeeEEEEe
Q psy14080         92 AQPYTTTSHSQNA  104 (113)
Q Consensus        92 ~~~~~~~s~~~~L  104 (113)
                      +.. +..+....+
T Consensus        80 a~N-g~a~~~~~~   91 (207)
T 3rbs_A           80 LQD-GKATNHSTV   91 (207)
T ss_dssp             EEE-TTEEEEEEE
T ss_pred             EEC-CCeEEEEEE
Confidence            865 444433443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=93.78  Aligned_cols=92  Identities=14%  Similarity=0.137  Sum_probs=63.0

Q ss_pred             ecceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEE--ecce----EEcCC----CCEEEEEeCCCCcEEEEEccC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILT--SGVL----TYTND----ARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~--~~~~----~~~~~----~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ....+++.+|++|+|+|.+.. .+.+.|.|+|.. ..+..  .+..    ....+    +|+.+.     .+++|+|+++
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v   77 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNE-TSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLSNL   77 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETT-EEEEEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEECSC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECC-EEEEEEecccCCCCceeecCccccccEEEC-----CCeEEEECCC
Confidence            345678889999999999975 345689999863 22211  1110    00112    477664     3689999999


Q ss_pred             CCCCCEEEEEeecCC-CCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|.|.+... ......+.|.|.+.
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~  107 (193)
T 2if7_A           78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQ  107 (193)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             CcccCceEEEEEEecCCCeEEEEEEEEEcc
Confidence            999999999999654 34456788888653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=99.19  Aligned_cols=99  Identities=12%  Similarity=0.116  Sum_probs=67.7

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeC---CCCcEEEEEccCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTD---GSDDWNLQIKFLQ   81 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~   81 (113)
                      .++....++++.+|++++|.|.+.+. +.+.|.|||....  ..+....  ....+|+....+.   ....++|.|.+++
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~--~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQK--EGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETT--SSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcC--CCCcceeeeecccccccCceeEEEEccCc
Confidence            34556778999999999999999987 7789999996532  2222111  0124577764221   2467799999999


Q ss_pred             CCCCEEEEEeecCC-CC-----eeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY-TT-----TSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~-~~-----~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+... +.     .+..+.|.|..
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  115 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRA  115 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEB
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEe
Confidence            99999999999543 22     12345677754

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.46  E-value=7.2e-13  Score=93.76  Aligned_cols=95  Identities=12%  Similarity=0.022  Sum_probs=71.1

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.++.. ..++++.+|++++|.|.+.+.+.+.|.|+|..  ..+.      ..+.|+.+... .++..+|.|.+++.+
T Consensus         3 ~~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~--~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~   72 (305)
T 2nzi_A            3 MAPHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQG--KEII------ADGLKYRIQEF-KGGYHQLIIASVTDD   72 (305)
T ss_dssp             CCCEEEEC-CCCEEECTTCCEEEEEEEECSSCCEEEEEETT--EECC------CCSSSEEEEEE-TTTEEEEEESSCCGG
T ss_pred             CCCeeeec-ccceEEeCCCcEEEEEEEeCCCCCeEEEEECC--EEcc------cCCCeEEEEEC-CCCEEEEEEccCChh
Confidence            35555443 45789999999999999998888999999843  2221      13457776532 345679999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      |+|.|.|.+. ..+..+..+.|.|..
T Consensus        73 d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (305)
T 2nzi_A           73 DATVYQVRATNQGGSVSGTASLEVEV   98 (305)
T ss_dssp             GCSEEEEEEEETTEEEEEEEEEEECE
T ss_pred             hCeEEEEEEEcCCCCccceEEEEEec
Confidence            9999999994 455667778888764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.46  E-value=4.6e-13  Score=89.33  Aligned_cols=84  Identities=12%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEcc-CCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF-LQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~~   92 (113)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ..+.|+.+..  .....+|.|.+ ++.+|+|.|+|.+
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a  180 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQ--DLI-------DNNGHYQVIV--TRSFTSLVFPNGVERKDAGFYVVCA  180 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEESS--CEE-------CSSSSCEEEE--CSSEEEEECTTCCCGGGCEEEEEEE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEECC--EEe-------ecCCCEEEEE--cCCceEEEEeCCCCcccCEeEEEEE
Confidence            4567889999999999999888999999843  222       2466887753  34577999999 9999999999999


Q ss_pred             -cCCCCeeEEEEeceec
Q psy14080         93 -QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g  108 (113)
                       +..+..+..+.|.|+.
T Consensus       181 ~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          181 KNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEeEEEEEEEeC
Confidence             4567778889998863

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.46  E-value=1.6e-14  Score=99.23  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=48.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+.+.+.+.|.|||+..   ...+.......  ...+||.+..  .+++++|+|.+++.+|
T Consensus        27 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D  104 (233)
T 3bqu_C           27 TQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENMLSED  104 (233)
T ss_dssp             EEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC-----CCC
T ss_pred             EEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCCCHHH
Confidence            444667889999999999999887667899999763   22332211111  1246776542  2356799999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|.|+|.+..
T Consensus       105 ~G~Y~C~~~~  114 (233)
T 3bqu_C          105 VADYYCLQSD  114 (233)
T ss_dssp             CSEEEEEECS
T ss_pred             CEEEEEEEec
Confidence            9999999954

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=85.74  Aligned_cols=80  Identities=15%  Similarity=0.073  Sum_probs=59.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++......++.+|++++|.|.+.+.+.+.+.|||.. . .+.                  ...+.+|.|.+++.+|+|.|
T Consensus        13 i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~-~-~~~------------------~~~~~~L~i~~v~~~d~G~Y   72 (96)
T 2ens_A           13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG-V-PLP------------------LPPSPVLILPEIGPQDQGTY   72 (96)
T ss_dssp             CEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESS-S-BCS------------------SCCCSEEEEESCCTTTCEEE
T ss_pred             EEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECC-E-ECc------------------CCCCCEEEECCCCcccCEEE
Confidence            344555678999999999999998888899999832 1 110                  01245899999999999999


Q ss_pred             EEeecC-CC--CeeEEEEeceec
Q psy14080         89 ECQAQP-YT--TTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~~~-~~--~~s~~~~L~V~g  108 (113)
                      +|.+.. ..  ..+..+.|.|.+
T Consensus        73 ~C~a~n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           73 SCVATHSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             ECEECCSSCCCEECCCEEEEECC
T ss_pred             EEEEEeCCCCcEEEEEEEEEEeC
Confidence            999965 33  356677887765

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=1.1e-13  Score=93.87  Aligned_cols=79  Identities=14%  Similarity=0.060  Sum_probs=59.7

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ...+++.+|++|+|.|.+.+.+.+.|.|||+..+   ..+.......  ..++||.+..  ..+.++|+|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEE
Confidence            6778999999999999998776678999997632   2222211111  1257998864  3567899999999999999


Q ss_pred             EEEeec
Q psy14080         88 YECQAQ   93 (113)
Q Consensus        88 Y~C~~~   93 (113)
                      |+|.+.
T Consensus        84 Y~C~~~   89 (212)
T 1nfd_E           84 YYCLSS   89 (212)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.45  E-value=2.9e-13  Score=96.71  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCC-----EEEEEecCCC-e--EEEec-ceEEcCCCCEEEEEe---CCCCcEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKV-----RVSWVRRRDW-H--ILTSG-VLTYTNDARFQVIHT---DGSDDWNL   75 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-----~V~W~k~~~~-~--~l~~~-~~~~~~~~R~~~~~~---~~~~~~~L   75 (113)
                      |..+.+.++++.+|++|+|+|.+.+.+.+     .|.|+|.... .  ++... ...+....|+.....   ...++++|
T Consensus         2 Vvv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL   81 (313)
T 4fqp_A            2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL   81 (313)
T ss_dssp             CEEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCE
T ss_pred             eEEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEE
Confidence            45566778889999999999999876543     4999997532 1  22111 123445677776421   12356799


Q ss_pred             EEccCCCCCCEEEEEeecCC--CCeeEEEEeceec
Q psy14080         76 QIKFLQKRDNGTYECQAQPY--TTTSHSQNAPGLG  108 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V~g  108 (113)
                      +|.+++.+|+|.|+|.+...  ...+..+.|.|..
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~  116 (313)
T 4fqp_A           82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA  116 (313)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB
T ss_pred             EECcCChhhCEEEEEEEeeccCcceeeeeeeeecc
Confidence            99999999999999998543  4556677777654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.45  E-value=2e-13  Score=91.37  Aligned_cols=97  Identities=11%  Similarity=-0.006  Sum_probs=69.1

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEE-ecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILT-SGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~-~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+......+++.+|+++.|.|.+.+.+.+.|.|+|........ ......  ....|+.+.      ..+|.|.+++.+
T Consensus         5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~------~~~L~i~~~~~~   78 (209)
T 1nbq_A            5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL------PTGITFKSVTRE   78 (209)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE------TTEEECSCCCTT
T ss_pred             EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee------ccEEEEeeCCHH
Confidence            34455667789999999999999998888899999976442111 111111  234677765      379999999999


Q ss_pred             CCEEEEEeecCC---CCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQPY---TTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~~~---~~~s~~~~L~V~g~  109 (113)
                      |+|.|.|.+...   ...+..+.|.|...
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~  107 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVP  107 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCEEBC
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEEecC
Confidence            999999999542   23456777877653

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=1e-13  Score=95.07  Aligned_cols=93  Identities=14%  Similarity=0.046  Sum_probs=64.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC-CC-EEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV-KV-RVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~-~~-~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +..+++.+|++|+|+|.+.+.+ .+ .|.|||+..   ...+.......  ...+||.+..  ..+.++|+|.+++.+|+
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~  103 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISGLRSEDE  103 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEESCCSTTC
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECCCCHHHC
Confidence            5677899999999999998753 33 699999753   22333221111  1247998764  34678999999999999


Q ss_pred             EEEEEeecCCCC----eeEEEEecee
Q psy14080         86 GTYECQAQPYTT----TSHSQNAPGL  107 (113)
Q Consensus        86 G~Y~C~~~~~~~----~s~~~~L~V~  107 (113)
                      |.|+|.+.....    ....+.|.|.
T Consensus       104 G~Y~C~~~~~~~~~~~~~~~~~l~V~  129 (234)
T 2j6e_L          104 ADYYCATWDDSLSAVIFGGGTKLTVL  129 (234)
T ss_dssp             SEEEEEEEETTTTEEEECCCBCCCBC
T ss_pred             EEEEEEEEcCCcceeEecCCEEEEEe
Confidence            999999964332    2234566664

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.44  E-value=4.1e-13  Score=92.45  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             ecceEEEecCCcEEEEEEEcc---CCCCEEEEEecCCC--e-EEEecce-----------------E-EcCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRD---IVKVRVSWVRRRDW--H-ILTSGVL-----------------T-YTNDARFQVIHT   67 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~---~~~~~V~W~k~~~~--~-~l~~~~~-----------------~-~~~~~R~~~~~~   67 (113)
                      ....+++.+|++|+|+|.+.+   .+.+.|.|+|....  . ++..+..                 . ....+|+.+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            345789999999999999987   67789999997632  1 2222110                 0 11246776542 


Q ss_pred             CCCCcEEEEEccCCCCCCEEEEEeecCCCC------eeEEEEeceecc
Q psy14080         68 DGSDDWNLQIKFLQKRDNGTYECQAQPYTT------TSHSQNAPGLGD  109 (113)
Q Consensus        68 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~------~s~~~~L~V~g~  109 (113)
                        .++++|.|.+++.+|+|.|.|.+.....      .+..+.|.|.+.
T Consensus        87 --~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           87 --LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             --TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             --CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence              3567999999999999999999964322      255788888764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.44  E-value=2.1e-13  Score=91.30  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             eEEEecCCcEEEEEE-Ecc-CCCCEEEEEecCCCeEEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         15 ISTGFLAVFSYSDKT-VRD-IVKVRVSWVRRRDWHILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~-v~~-~~~~~V~W~k~~~~~~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      .+.+.+|++++|+|. +.. .+.+.|.|+|.. ..+...  +...+..++|+.+.     .+.+|.|.+++.+|+|.|.|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~-~~i~~~~~~~~~~~~~~r~~~~-----~~gsL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEEC-----TTSCEEESSCCGGGCEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCC-ceeEEEcCCCeecCCCCeEEEC-----CCCcEEEcccccccCEEEEE
Confidence            477899999999994 331 345689999853 333221  11223346898874     23469999999999999999


Q ss_pred             eec-CCCCe--eEEEEeceecc
Q psy14080         91 QAQ-PYTTT--SHSQNAPGLGD  109 (113)
Q Consensus        91 ~~~-~~~~~--s~~~~L~V~g~  109 (113)
                      .+. ..+..  +..+.|.|...
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILEM  100 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEECC
T ss_pred             EEEeCCCCEEEEEEEEEEEeCC
Confidence            995 44554  67788888653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.44  E-value=7.3e-13  Score=87.45  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....++++.+|++++|.|.+.+.+.+.+.|+|.  +..+.       ...|+.+.........+|.|.+++.+|+|.|.
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~--~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            6 MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQ-------NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             -CCCEEEEEETTCCEEEEEEEESCSSCCEEEEET--TEECC-------SSEEEEEEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred             EeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEEC--CeecC-------CCCceEEEecCCCceEEEEEeecCcccCeEEE
Confidence            3445668899999999999999888889999984  32221       22344443322223579999999999999999


Q ss_pred             EeecCC-C-CeeEEEEeceec
Q psy14080         90 CQAQPY-T-TTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~-~-~~s~~~~L~V~g  108 (113)
                      |.+... + ..+..+.|.|.+
T Consensus        77 C~~~~~~~~~~~~~~~l~V~~   97 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTVEG   97 (182)
T ss_dssp             EEESSCTTCEECCCEEEEEEC
T ss_pred             EEEEcCCCcEEEEEEEEEEec
Confidence            999653 3 345667777764

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=1.2e-12  Score=82.08  Aligned_cols=94  Identities=17%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC--CCCcEEEEEccC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD--GSDDWNLQIKFL   80 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v   80 (113)
                      ..|+.+.......    ..+.+.|.|.+.+.+.+.+.|+|.  +..+.       .+.|+.+....  .....+|.|.++
T Consensus         6 ~~pP~i~~~~~~~----~~~~~~l~C~~~g~P~p~i~W~k~--g~~l~-------~~~~~~~~~~~~~~~~~~~L~i~~~   72 (118)
T 1wwc_A            6 YYPPRVVSLEEPE----LRLEHCIEFVVRGNPPPTLHWLHN--GQPLR-------ESKIIHVEYYQEGEISEGCLLFNKP   72 (118)
T ss_dssp             CCCCCCCCCCCCC----CCCEEEEEEEEECSSCCEEEEEET--TEECC-------CSSSEEEEEEECSSEEEEEEEEESC
T ss_pred             ecCCceeccCCCe----eccceEEEEEeeeeCCCeEEEEEC--CEECC-------CCCceeEEEeccCccccEEEEECCC
Confidence            3466555442221    236788999999999999999984  33322       23344433211  113568999999


Q ss_pred             CCCCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|.|.+ +..+..+..+.|.|.+.
T Consensus        73 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  102 (118)
T 1wwc_A           73 THYNNGNYTLIAKNPLGTANQTINGHFLKE  102 (118)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred             ChhcCEEEEEEEECCCCeEeeEEEEEEccC
Confidence            999999999999 55677888889877654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.43  E-value=2e-12  Score=88.24  Aligned_cols=98  Identities=14%  Similarity=0.070  Sum_probs=62.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe-EEEecceEEcCCC--CEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH-ILTSGVLTYTNDA--RFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~-~l~~~~~~~~~~~--R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +.......+++.+|++++|.|.+.+.+  ...+.|+|..... .............  ....      ...+|.|.+++.
T Consensus       107 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~  180 (213)
T 2x1w_L          107 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK------FLSTLTIDGVTR  180 (213)
T ss_dssp             EEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE------EEEEEEESSCCG
T ss_pred             eEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcccee------eeEEEEECCCCc
Confidence            333444456899999999999999754  3479998854321 1100000000000  0011      245899999999


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceecccc
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g~~~  111 (113)
                      +|+|.|+|.+. ..+..+..+.|.|.+.-.
T Consensus       181 ~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          181 SDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             ccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            99999999994 557778999999987643

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.43  E-value=9.2e-13  Score=92.86  Aligned_cols=82  Identities=17%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc------eEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV------LTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~------~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ....++.+|++++|.|.+.+.+  .+.|.|||+..+   ..+ ....      ...  ..++||.+..+...+.++|.|.
T Consensus       158 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  237 (268)
T 1x9q_A          158 TGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMN  237 (268)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEEC
Confidence            3457899999999999998764  378999998532   222 1110      001  1357999875433456899999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++.+|+|+|+|.+..
T Consensus       238 ~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          238 NLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             CCCHHHCEEEEEEEcc
Confidence            9999999999999964

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.42  E-value=3.4e-12  Score=89.47  Aligned_cols=95  Identities=14%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+.........+.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ....++....  .....+|.|.+++.+
T Consensus        97 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~--~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~  165 (284)
T 2rik_A           97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE--TEI-------QESSKFRMSF--VESVAVLEMYNLSVE  165 (284)
T ss_dssp             CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETT--EEC-------CCSSSEEEEE--ETTEEEEEECSCCGG
T ss_pred             CCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECC--EEC-------cCCCcEEEEE--cCCEEEEEECCCCcc
Confidence            35555555556677899999999999998888999999843  222       2345665543  235679999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|.|.+. ..+..+..+.|.|...
T Consensus       166 d~G~Y~C~a~n~~g~~~~~~~l~V~~~  192 (284)
T 2rik_A          166 DSGDYTCEAHNAAGSASSSTSLKVKEP  192 (284)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             cCEEEEEEEEcCCCceeEEEEEEEecC
Confidence            9999999994 4566777888888753

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.42  E-value=1.8e-12  Score=85.95  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-CCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-KRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~   91 (113)
                      .....+.+|+++.|.|.+.+.+.+.+.|+|.  +..+       ..+.|+.+..  .....+|.|.+++ .+|+|.|+|.
T Consensus       110 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~--~~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~  178 (197)
T 3lcy_A          110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG--QKLL-------QNSENITIEN--TEHYTHLVMKNVQRKTHAGKYKVQ  178 (197)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEET--TEEC-------CCCSSEEEEE--CSSEEEEEESSCCHHHHCEEEEEE
T ss_pred             CcceeecCCCeEEEEEEEeeeeCCeeEEeEC--CEEC-------CCCCceEEEE--cCCEEEEEEccccchhhCceEEEE
Confidence            3556788999999999999988899999984  3332       2456777653  3345799999999 5999999999


Q ss_pred             ec-CCCCeeEEEEeceecc
Q psy14080         92 AQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V~g~  109 (113)
                      +. ..+..+..+.|.|.++
T Consensus       179 a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          179 LSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             EECSSCEEEEEEEEEEECC
T ss_pred             EEcCcCceEEEEEEEEecC
Confidence            94 5677888999999864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.42  E-value=3.7e-13  Score=92.56  Aligned_cols=87  Identities=10%  Similarity=-0.096  Sum_probs=57.9

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+......+.++.+|++++|.|.+.+.|.+.|.|+|.++.....     ...+.|+.+.  .++.-..|.|.+++.+|+
T Consensus       106 p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~-----~~~~~r~~~~--~~g~l~il~i~~v~~~D~  178 (203)
T 4fa8_A          106 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP-----TAANGGVMKE--KDGSLSVAVDLSLPKPWH  178 (203)
T ss_dssp             EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-----------------CCEEC--TTSCEEEEEEEEECSSCC
T ss_pred             CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCc-----ccccceEEEe--CCCCEEEEEECCCCHHHC
Confidence            344455566678889999999999999999999998854322211     1235677765  233334567789999999


Q ss_pred             EEEEEeec-CCCCee
Q psy14080         86 GTYECQAQ-PYTTTS   99 (113)
Q Consensus        86 G~Y~C~~~-~~~~~s   99 (113)
                      |.|+|.+. ..+...
T Consensus       179 G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          179 LPVTCVGKNDKEEAH  193 (203)
T ss_dssp             CCEEEEEESSSCEEE
T ss_pred             EEEEEEEEcCCCEEE
Confidence            99999995 445544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=87.19  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCC---EEEEEecCCC---e-EEEe-cc--eEE--cCCCCEEEEEe-CCCCcEEEEEc
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKV---RVSWVRRRDW---H-ILTS-GV--LTY--TNDARFQVIHT-DGSDDWNLQIK   78 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~---~V~W~k~~~~---~-~l~~-~~--~~~--~~~~R~~~~~~-~~~~~~~L~I~   78 (113)
                      .+..+++.+|++|+|+|.+.+.+.+   .|.|+|.+..   . +... ..  ...  ....|+..... ....+++|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4567899999999999999987654   4899997632   1 1111 11  111  12456665421 23457899999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++.+|+|.|+|.+..
T Consensus        85 ~v~~~D~G~Y~C~~~~  100 (218)
T 4frw_A           85 NAVQADEGEYECRVST  100 (218)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eccHHHCCceeEEEEe
Confidence            9999999999999854

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.42  E-value=4.3e-13  Score=93.48  Aligned_cols=96  Identities=18%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             ecceEEEecCCcEEEEEEEc---cCCCCEEEEEecCCC----e-EEEec-ceEE---cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         12 FGQISTGFLAVFSYSDKTVR---DIVKVRVSWVRRRDW----H-ILTSG-VLTY---TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~---~~~~~~V~W~k~~~~----~-~l~~~-~~~~---~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ....+++.+|++++|+|.+.   +.+.+.|.|+|....    . ++... ....   .-.+|+.+..+...++++|.|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            34568899999999999998   555678999997531    1 22211 1111   01367776544455678999999


Q ss_pred             CCCCCCEEEEEeecCC-C--CeeEEEEecee
Q psy14080         80 LQKRDNGTYECQAQPY-T--TTSHSQNAPGL  107 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-~--~~s~~~~L~V~  107 (113)
                      ++.+|+|.|+|.+... .  ..+..+.|.|.
T Consensus        91 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           91 VQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             CCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             CCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            9999999999999532 2  34566777664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.42  E-value=1.5e-12  Score=86.31  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+ +.....+++.+|++++|.|.+.+.+.+.+.|+|..  ..+.      ..+.|+.+..    +..+|.|.+++.+|
T Consensus         7 ~P~i-~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~--~~~~------~~~~~~~~~~----~~~~L~i~~~~~~d   73 (192)
T 2iep_A            7 APVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNK--ILIK------LFDTRYSIRE----NGQLLTILSVEDSD   73 (192)
T ss_dssp             EEEE-SSCCCEEEEETTSCEEEECCEEEESCCEEEEEETT--EECC------TTCTTEEEEG----GGTEEEESSCCGGG
T ss_pred             Ccee-ecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECC--EEcc------ccCccEEEcC----CccEEEEcCCCccc
Confidence            4443 34456788999999999999998888899999842  2221      2367888763    34489999999999


Q ss_pred             CEEEEEeecCC-CC-eeEEEEeceec
Q psy14080         85 NGTYECQAQPY-TT-TSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~-~~-~s~~~~L~V~g  108 (113)
                      +|.|.|.+... +. .+..+.|.|..
T Consensus        74 ~G~Y~C~~~~~~~~~~~~~~~l~v~~   99 (192)
T 2iep_A           74 DGIYCCTANNGVGGAVESCGALQVKM   99 (192)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEEEE
T ss_pred             CeEEEEEEEcCCCceeEeEEEEEEEe
Confidence            99999999543 33 45566776654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.41  E-value=2.5e-12  Score=90.23  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             eecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ..+++..+.+|++++|.|.+.+.+ .+.|.|+|.++..+.       ....|+.+... +....+|.|.+++.+|+|.|+
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~   78 (291)
T 1qz1_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYK   78 (291)
T ss_dssp             EESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCC-------SSCSSEEEEEE-ETTEEEEEECSCCGGGCEEEE
T ss_pred             ecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECc-------cCCceEEEEEc-CCCeEEEEEecCCCCCCEEEE
Confidence            345567899999999999999876 689999985432221       13567776532 345789999999999999999


Q ss_pred             EeecCC--CCeeEEEEeceec
Q psy14080         90 CQAQPY--TTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~--~~~s~~~~L~V~g  108 (113)
                      |.+...  ...+..+.|.|..
T Consensus        79 C~~~n~~g~~~~~~~~l~v~~   99 (291)
T 1qz1_A           79 CVVTAEDGTQSEATVNVKIFQ   99 (291)
T ss_dssp             EEEECTTSCEEEEEEEEEEEC
T ss_pred             EEEEcCCCCeeEEEEEEEeec
Confidence            999643  2446777777764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.41  E-value=1.3e-12  Score=96.17  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.++.+|+++.|.|.+.+.+.+.|.|+|.  +..+       ..++|+.+.      +.+|.|.+++.+|+|.|+|.+
T Consensus       302 ~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~--g~~l-------~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~A  366 (384)
T 3kld_A          302 INDIHVAMEESVFWECKANGRPKPTYRWLKN--GDPL-------LTRDRIQIE------QGTLNITIVNLSDAGMYQCVA  366 (384)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCEEEEEET--TEEC-------CCBTTEEEE------TTEEEESSCCGGGCEEEEEEE
T ss_pred             CCceEecCCCCEEEEeECCccCCCeEEEEEC--CEEC-------CCCccEEEe------CCEEEEeecChhhCEEEEEEE
Confidence            4567889999999999999999999999984  3333       235677764      338999999999999999999


Q ss_pred             -cCCCCeeEEEEeceec
Q psy14080         93 -QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g  108 (113)
                       +..+..+..+.|.|++
T Consensus       367 ~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          367 ENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EETTEEEEEEEEEEEC-
T ss_pred             EeCCceEEeceEEEEec
Confidence             5668888889999975

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.41  E-value=2.5e-12  Score=87.74  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-C
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-P   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-~   94 (113)
                      +.+.+|++++|.|.+.+.+.+.|.|+|..+. .+         ..+....    ...++|.|.+++.+|+|.|+|.+. .
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~-~~---------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~   76 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PL---------NGKVTNE----GTTSTLTMNPVSFGNEHSYLCTATCE   76 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCC-CC---------SSEEEEE----TTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCC-Cc---------cceEEEc----CCccEEEECcCCHHHCEEEEEEEEEC
Confidence            4455999999999999888889999884321 11         1222211    246789999999999999999995 4


Q ss_pred             CCCeeEEEEeceecc
Q psy14080         95 YTTTSHSQNAPGLGD  109 (113)
Q Consensus        95 ~~~~s~~~~L~V~g~  109 (113)
                      .+..+..+.|.|...
T Consensus        77 ~~~~~~~~~l~V~~~   91 (202)
T 1vca_A           77 SRKLEKGIQVEIYSF   91 (202)
T ss_dssp             TEEEEEEEEEEEEBC
T ss_pred             CceEeeEEEEEEEeC
Confidence            455677888888753

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.40  E-value=2.2e-12  Score=87.52  Aligned_cols=93  Identities=18%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ......+.+|+++.|.|.+.+.+.+.+.|+|..  ..+...    ....|+....  +....+|.|.+++.+|+|.|+|.
T Consensus       114 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g--~~l~~~----~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~  185 (212)
T 2yd6_A          114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDTS----NNNGRIKQLR--SESIGALQIEQSEESDQGKYECV  185 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEETT--EEC----------CCEEEEE--ETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcceeEecCCCEEEEEEecCCCCCeEEEEECC--ccccCc----CCCceEEEEe--cCCeEEEEEcCCCcccCEEEEEE
Confidence            345567889999999999999888999999843  222211    1246777653  23468999999999999999999


Q ss_pred             ec-CCCC-eeEEEEeceeccccc
Q psy14080         92 AQ-PYTT-TSHSQNAPGLGDLLM  112 (113)
Q Consensus        92 ~~-~~~~-~s~~~~L~V~g~~~~  112 (113)
                      +. ..+. .+..++|.|......
T Consensus       186 a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          186 ATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             EEETTEEEECCCEEEEEEC----
T ss_pred             EECCCCccccccccEEEEecccc
Confidence            94 4444 356788888766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=1.5e-12  Score=97.96  Aligned_cols=90  Identities=18%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      .....+++.+|++++|.|.+. .+.+.|.|++.+ +.++..+    ..+.|+.+.     .+.+|+|.+++.+|+|.|+|
T Consensus       346 ~~~~~~~v~~G~~v~L~C~~~-~p~p~i~W~~~~-~~~~~~~----~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C  414 (440)
T 3zyj_A          346 EPPADLNVTEGMAAELKCRAS-TSLTSVSWITPN-GTVMTHG----AYKVRIAVL-----SDGTLNFTNVTVQDTGMYTC  414 (440)
T ss_dssp             ECCCCEEECTTSCCEECCEES-STTSEEEEECTT-SCEEESS----SCCSSEEEC-----TTCCEEESSCCSTTCEEEEE
T ss_pred             ccccceeeccCceEEEEeecC-CCCCceEEEeCC-Cceeecc----CCCceEEEc-----cCCeEEEccCChhhCEEEEE
Confidence            446678999999999999995 577899999854 3333221    124577765     24579999999999999999


Q ss_pred             ee-cCCCCeeEEEEeceecccc
Q psy14080         91 QA-QPYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        91 ~~-~~~~~~s~~~~L~V~g~~~  111 (113)
                      .+ +..+..+..+.+.|.+...
T Consensus       415 ~a~N~~G~~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          415 MVSNSVGNTTASATLNVTGTHH  436 (440)
T ss_dssp             EEECSSCEEEEEEEEEEC----
T ss_pred             EEEcCCCcEEEEEEEEEecccc
Confidence            99 4568888899999987643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.40  E-value=7.9e-13  Score=87.35  Aligned_cols=80  Identities=13%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ...+.+|+++.|.|.+.+.+.+.+.|+|.  +..+       ..+.++.+..    ...+|.|.+++.+|+|.|+|.+ +
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~--g~~~-------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n  173 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRN--GKLI-------EENEKYILKG----SNTELTVRNIINSDGGPYVCRATN  173 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEET--TEEC-------CCSSSEEEET----TTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEEC--CEEC-------cCCCcEEEec----CCCEEEEcCCChhhCeeEEEEEEe
Confidence            45667899999999999888889999984  3332       2355666542    3558999999999999999999 4


Q ss_pred             CCCCeeEEEEecee
Q psy14080         94 PYTTTSHSQNAPGL  107 (113)
Q Consensus        94 ~~~~~s~~~~L~V~  107 (113)
                      ..+..+..+.|.|.
T Consensus       174 ~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          174 KAGEDEKQAFLQVF  187 (189)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            55677777888775

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.40  E-value=9.2e-13  Score=89.36  Aligned_cols=92  Identities=13%  Similarity=0.093  Sum_probs=63.7

Q ss_pred             cceEEEecCCcEEEEEEEcc--CCCCEEEEEecCCCeEE-Ee--cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRD--IVKVRVSWVRRRDWHIL-TS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~--~~~~~V~W~k~~~~~~l-~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +..+.+.+|++|+|+|....  .+.+.|.|+|..+...+ ..  +...+..++|+.+.     .+++|.|++++.+|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~-----~ngsL~I~~v~~~DsG~   80 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF-----KNGTLKIKHLKTDDQDI   80 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC-----TTSCEEECSCCGGGCEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC-----CCCCEEECCCChhhCEE
Confidence            46688999999999995432  34568999984323222 21  11122357898876     24599999999999999


Q ss_pred             EEEeec-CCCCe--eEEEEeceecc
Q psy14080         88 YECQAQ-PYTTT--SHSQNAPGLGD  109 (113)
Q Consensus        88 Y~C~~~-~~~~~--s~~~~L~V~g~  109 (113)
                      |.|.+. ..+..  +..+.|.|...
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEECC
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcCc
Confidence            999995 44433  46778888753

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=98.69  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +..+++.+|++++|+|.+.+.+.+.|.|||...+   ..+.. ... ....++||...  .+.+.++|+|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS--KSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe--cCCCEEEEEECCCChhhCEE
Confidence            5567899999999999999888889999997522   22221 110 01124788854  44567899999999999999


Q ss_pred             EEEeecCCC----CeeEEEEeceec
Q psy14080         88 YECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      |+|.+....    ..+..+.|.|.+
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~  109 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLG  109 (523)
T ss_pred             EEEEEccCCCccccccCceEEEecc
Confidence            999996432    233456777743

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.40  E-value=1e-12  Score=87.46  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ...+.+|+++.|.|.+.+.+.+.|.|+|...  .+         ..+.....    ...+|.|.+++.+|+|.|+|.+ +
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~--~~---------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n  186 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKVLE--PM---------PSTAEIST----SGAVLKIFNIQLEDEGIYECEAEN  186 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTB--CC---------CTTCEEET----TTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeCCC--cC---------CCceeecC----CCCEEEEccCChhhCEEEEEEEEe
Confidence            7789999999999999988889999998542  11         11222221    2459999999999999999999 4


Q ss_pred             CCCCeeEEEEeceec
Q psy14080         94 PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g  108 (113)
                      ..+..+..+.|.|++
T Consensus       187 ~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          187 IRGKDKHQARIYVQA  201 (201)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             cCCceeeeEEEEEeC
Confidence            567778888888863

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.40  E-value=2.6e-12  Score=90.36  Aligned_cols=89  Identities=12%  Similarity=-0.037  Sum_probs=63.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCC--CeEEEecceEEcCCCCEEEEEe--CCCCcEEEEEccCCCCCCEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD--WHILTSGVLTYTNDARFQVIHT--DGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~--~~~l~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ....+.+|+++.|.|.+.+.+.+.|.|+|...  ...+          .+......  ......+|.|.+++.+|+|.|.
T Consensus       189 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  258 (289)
T 3mjg_X          189 VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV----------EPVTDFLLDMPYHIRSILHIPSAELEDSGTYT  258 (289)
T ss_dssp             SCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC----------CCEEEESCTTTTEEEEEEEESSCCSSCCEEEE
T ss_pred             CcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc----------cccccccCCcceEEEEEEEEcccChhhCcEEE
Confidence            33678999999999999998889999996431  1100          00000000  0123579999999999999999


Q ss_pred             Eee-cCCCCeeEEEEeceeccccc
Q psy14080         90 CQA-QPYTTTSHSQNAPGLGDLLM  112 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~g~~~~  112 (113)
                      |.+ +..+..+..+.|.|.+.-.|
T Consensus       259 C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          259 CNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEC--
T ss_pred             EEeecCCCCceeEEEEEEEEEecC
Confidence            999 56788888999999887655

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.40  E-value=6.6e-13  Score=88.22  Aligned_cols=91  Identities=15%  Similarity=0.135  Sum_probs=61.8

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceE-Ec----CCCCEEEEEe-CCCCcEEEEEccCCCCCCEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLT-YT----NDARFQVIHT-DGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~-~~----~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ..+++.+|++++|+|.+.+.+.+.|.|+|.+...++...... ..    ...|+..... ..++.++|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            457899999999999999888889999997543333221111 11    1346655311 02346789999999999999


Q ss_pred             EEEeecCCCCeeEEEEecee
Q psy14080         88 YECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        88 Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      |.|.+...   ...+.|.|.
T Consensus        83 Y~C~~~~~---~~~~~l~V~   99 (184)
T 2ny1_B           83 YICEVEDQ---KEEVQLLVF   99 (184)
T ss_dssp             EEEEETTE---EEEEEEEEE
T ss_pred             EEEEEEcC---CCcEEEEEE
Confidence            99999653   224556654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.39  E-value=4.6e-13  Score=91.87  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEE----eCCCCcEEEEEccC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIH----TDGSDDWNLQIKFL   80 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~----~~~~~~~~L~I~~v   80 (113)
                      .+.........+.+|+++.|.|.+.+.+.+.+.|+|..  ++..+..+     ...++....    .......+|.|.++
T Consensus       115 ~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~  189 (241)
T 3grw_A          115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD-----GTPYVTVLKSWISESVEADVRLRLANV  189 (241)
T ss_dssp             EEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTT-----TCCCEEEEEEEECSBSEEEEEEEECSC
T ss_pred             eeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCC-----CceeeeeeeEeeeeecCCceEEEECcC
Confidence            33444456677889999999999999888899999942  11111100     011111110    01224678999999


Q ss_pred             CCCCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|+|.+. ..+..+..+.|.|.+.
T Consensus       190 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          190 SERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             CcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence            9999999999994 5677788899998764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.38  E-value=1.3e-13  Score=102.84  Aligned_cols=96  Identities=8%  Similarity=0.083  Sum_probs=65.7

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Eecc---e-E--EcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TSGV---L-T--YTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~~~---~-~--~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+|++|+|+|.+.+.+  .+.|.|||+..+   ..+ ....   . .  ...++||.+..+..++.++|+|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            4557899999999999998753  578999998632   122 2110   0 0  0125799876433345789999999


Q ss_pred             CCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPY-TTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g  108 (113)
                      +.+|+|.|+|.+... ......+.|.|.+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~  114 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSS  114 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECC
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEcc
Confidence            999999999999543 2334456777753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.38  E-value=3.8e-12  Score=94.26  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe---EEE-e----cceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH---ILT-S----GVLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~---~l~-~----~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .....+.+|++++|.|.+.+.+  .+.|.|||...+.   .+. .    +....  ...+||.+..+...+.++|.|.++
T Consensus       225 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  304 (438)
T 1qgc_4          225 SGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSL  304 (438)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCC
Confidence            4567899999999999999877  5789999975222   111 1    00111  135799987655567889999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +.+|+|.|+|.+..
T Consensus       305 ~~~D~G~Y~C~a~n  318 (438)
T 1qgc_4          305 RSADTAMYYCVRRE  318 (438)
T ss_dssp             CGGGCCEEEEEECC
T ss_pred             ChhhCEEEEEEEEc
Confidence            99999999999964

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.38  E-value=2.7e-12  Score=86.95  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ......+.+|+++.|.|.+.+.+.+.|.|+|..  ..+.      ..+.|+.+.      +.+|.|.+++.+|+|.|+|.
T Consensus       116 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~~~~------~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~  181 (212)
T 2yd1_A          116 GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ--TKVD------MSNPRYSLK------DGFLQIENSREEDQGKYECV  181 (212)
T ss_dssp             CCCCEEEETTCCEEECCEEECSSCCEEEEEETT--EECC------TTSTTEEEE------TTEEEECSCCGGGCEEEEEE
T ss_pred             CCCceEeecCCeEEEEEEeccCCCCeEEEEECC--eEcc------cCCCeEEcc------CCeEEEccCChhhCEEEEEE
Confidence            345577889999999999999888899999843  2221      135677554      23999999999999999999


Q ss_pred             ec-CCCCee-EEEEeceeccc
Q psy14080         92 AQ-PYTTTS-HSQNAPGLGDL  110 (113)
Q Consensus        92 ~~-~~~~~s-~~~~L~V~g~~  110 (113)
                      +. ..+..+ ..+.|.|.+..
T Consensus       182 a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          182 AENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EEETTEEEECCCEEEEEEC--
T ss_pred             eecCCCceeEEEEEEEEEecc
Confidence            95 445543 34788888754

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.38  E-value=1.2e-12  Score=91.99  Aligned_cols=86  Identities=16%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ..++.+|+++.|.|.+.+.+.+.+.|+|.  +..+..+.   ....|+...    ....+|.|.+++.+|+|.|+|.+ +
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~--g~~~~~~~---~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N  275 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKD--GEPIENEE---EDDEKHIFS----DDSSELTIRNVDKNDEAEYVCIAEN  275 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEET--TEECCCC-----CCSSEEEC----TTSCEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEEC--CEECcCCC---CCCcceEEc----CCCcEEEEEecChhcCEEEEEEEEe
Confidence            45678899999999999988899999984  33322110   012466553    23568999999999999999999 5


Q ss_pred             CCCCeeEEEEeceecc
Q psy14080         94 PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g~  109 (113)
                      ..+..+..+.|.|.++
T Consensus       276 ~~G~~~~~~~l~V~~k  291 (291)
T 1qz1_A          276 KAGEQDASIHLKVFAK  291 (291)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCceEEEEEEEEEcC
Confidence            6677888999998753

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.37  E-value=2.4e-12  Score=85.73  Aligned_cols=86  Identities=12%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             CceeeEeecceEEEec-CCcEEEEEEEccCCC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFL-AVFSYSDKTVRDIVK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~-G~~a~L~C~v~~~~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      |+.|..  ...+++.+ |+++.|.|.+.+.+.  +.+.|+|..  ..+        ...++..      .+.+|.|.+++
T Consensus         3 ~P~i~~--~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~--~~~--------~~~~~~~------~~~~L~i~~~~   64 (190)
T 2wv3_A            3 EPRIVT--SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG--VEL--------TATRKNA------SNMEYRINKPR   64 (190)
T ss_dssp             CCEEEE--CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETT--EEC--------TTCCBCC------SEEEEEESSCC
T ss_pred             CCcccc--cceEEEccCCceEEEEEEeccCCCCceEEEEEECC--EEC--------cccceEe------ccEEEEEecCC
Confidence            555655  34456667 999999999998776  789999842  222        1222211      46799999999


Q ss_pred             CCCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      .+|+|.|.|.+......+..+.|.|..
T Consensus        65 ~~d~G~Y~C~~~n~~~~~~~~~l~V~~   91 (190)
T 2wv3_A           65 AEDSGEYHCVYHFVSAPKANATIEVKA   91 (190)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cccCEEEEEEEEeCCcccccEEEEEec
Confidence            999999999995446667788888865

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.37  E-value=4.1e-12  Score=92.57  Aligned_cols=81  Identities=19%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|+++.|.|.+.+.+.+.|.|+|.  +..+       ..+.|+.+.      +.+|.|.+++.+|+|.|+|.+
T Consensus       301 ~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~--g~~~-------~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a  365 (382)
T 1cs6_A          301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRD--GQPL-------ASQNRIEVS------GGELRFSKLVLEDSGMYQCVA  365 (382)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEET--TEEC-------CCCSSEEEE------TTEEEESSCCGGGCEEEEEEE
T ss_pred             CCccEEcCCCeEEEEEEeeeecCCEEEEEEC--CEEC-------CCCceEEEE------CCEEEECcCCcccCEEEEEEE
Confidence            3456789999999999999988899999984  3332       235677764      338999999999999999999


Q ss_pred             -cCCCCeeEEEEeceec
Q psy14080         93 -QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g  108 (113)
                       +..+..+..+.|.|++
T Consensus       366 ~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          366 ENKHGTVYASAELTVQA  382 (382)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEeC
Confidence             5667888889999874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.37  E-value=5.4e-12  Score=96.80  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC---CEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++++++.+|++++|.|.+.+.+.   ..|.|||....   ..+......  ....+|+.+.....++.++|+|.+++.+
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            345688999999999999987653   37999997532   122211111  1124688876433566789999999999


Q ss_pred             CCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|.|.+. .....+..+.|.|...
T Consensus        86 D~G~Y~C~~~n~~~~~~~~~~l~V~~~  112 (585)
T 2ocw_A           86 DSGRYKCGLGINSRGLSFDVSLEVSQG  112 (585)
T ss_pred             cCEEEEEEcccCCCCceEEEEEEEecC
Confidence            9999999994 4456677788888654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.37  E-value=1.2e-12  Score=93.56  Aligned_cols=105  Identities=12%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC----CCCEEEEEecCCC---eEEEecc---eEE--cCCCCEEEEEeCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDW---HILTSGV---LTY--TNDARFQVIHTDGSD   71 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~---~~l~~~~---~~~--~~~~R~~~~~~~~~~   71 (113)
                      .|+........++++.+|++++|+|.+.+.    +...|.|+|....   .+.....   ...  ...+|+.+. ....+
T Consensus        12 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~   90 (331)
T 3u83_A           12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFT   90 (331)
T ss_dssp             ---------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSS
T ss_pred             CCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCC
Confidence            355556677778999999999999999876    4457999995432   1222110   011  135788775 23456


Q ss_pred             cEEEEEccCCCCCCEEEEEeec--CCCCeeEEEEeceecc
Q psy14080         72 DWNLQIKFLQKRDNGTYECQAQ--PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        72 ~~~L~I~~v~~~D~G~Y~C~~~--~~~~~s~~~~L~V~g~  109 (113)
                      +.+|.|.+++.+|+|.|.|.+.  ..+..+..+.|.|...
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  130 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK  130 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecC
Confidence            7799999999999999999863  2355677788888763

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.36  E-value=5.8e-12  Score=97.29  Aligned_cols=94  Identities=14%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ..|+.++. ..+++.+.+|++++|.|.+.+.+.+.|.|||.. . .+       ...+|+.+..  .++..+|.|.+++.
T Consensus         3 ~~pP~f~~-~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g-~-~l-------~~~~~~~~~~--~~~~~~L~I~~v~~   70 (570)
T 3b43_A            3 MEPPYFIE-PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEH-T-KL-------RSAPAYKMQF--KNNVASLVINKVDH   70 (570)
T ss_dssp             CCCCEEEE-CCCCEEECTTSCEEEEEEEESSSSCEEEEECSS-S-BC-------CCCSSEEEEC--CTTEEEEEESSCCG
T ss_pred             CCCCcceE-ECCceEEcCCCEEEEEEEEccCCCCEEEEEECC-E-Ec-------cCCCCEEEEE--ECCEEEEEEccCCh
Confidence            34666554 455788999999999999999999999999843 2 12       2356777652  34568999999999


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+. ..+.....+.|.|..
T Consensus        71 ~D~G~Y~C~a~N~~g~~~~~~~l~v~~   97 (570)
T 3b43_A           71 SDVGEYTCKAENSVGAVASSAVLVIKE   97 (570)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             hhCEEEEEEEEeCCceEEEEEEEEECC
Confidence            99999999995 445555556666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.36  E-value=6.5e-13  Score=100.26  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      .....+++.+|++++|.|.+.  +.+.|.|+|.+ +.++...    ..+.|+.+.     .+.+|.|.+++.+|+|.|+|
T Consensus       357 ~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~-~~~~~~~----~~~~~~~~~-----~~g~L~i~~v~~~D~G~Y~C  424 (452)
T 3zyi_A          357 DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPN-GTVLSHA----SRHPRISVL-----NDGTLNFSHVLLSDTGVYTC  424 (452)
T ss_dssp             BCCCCEECCTTSCCEECCBCC--TTSEEEEECTT-SCEECSS----CCCSSCEEC-----TTSCEECSSCCTTCCEEEEE
T ss_pred             cccccccccCCCEEEEEEeCC--CCCcEEEEeCC-CcEeccC----CCCCCEEEC-----CCCeEEEeecCHHHCEEEEE
Confidence            345668899999999999998  88899999854 3333211    124577764     34579999999999999999


Q ss_pred             ee-cCCCCeeEEEEeceecccc
Q psy14080         91 QA-QPYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        91 ~~-~~~~~~s~~~~L~V~g~~~  111 (113)
                      .+ +..+..+..+.|.|.+...
T Consensus       425 ~a~N~~G~~~~~~~l~v~~~~~  446 (452)
T 3zyi_A          425 MVTNVAGNSNASAYLNVSTAGT  446 (452)
T ss_dssp             EEECSSCEEEEEEEEEC-----
T ss_pred             EEEcCCCcEEEEEEEEEEcccc
Confidence            99 4668889999999987643

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.36  E-value=4.9e-12  Score=90.42  Aligned_cols=76  Identities=13%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             EEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EE-ec-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LT-SG-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~-~~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|.+++..  ++.++|+||.+++    +  +. .+ ...+.  -..||.+..+..++...|++.+++.||
T Consensus       142 lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eD  221 (259)
T 4f9l_D          142 LVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSED  221 (259)
T ss_dssp             EEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCcEEEEEeeeCCCcccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHH
Confidence            478999999999999764  5789999998642    2  11 11 22222  257999998888999999999999999


Q ss_pred             CEEEEEee
Q psy14080         85 NGTYECQA   92 (113)
Q Consensus        85 ~G~Y~C~~   92 (113)
                      +|+|+|+-
T Consensus       222 TAvYYCAr  229 (259)
T 4f9l_D          222 SAVYYCSR  229 (259)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99999986

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.36  E-value=8.7e-13  Score=89.80  Aligned_cols=94  Identities=14%  Similarity=0.096  Sum_probs=64.1

Q ss_pred             eecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCC-e--EEEecce-------EEc----CCCCEEEEEeCCCCcEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDW-H--ILTSGVL-------TYT----NDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~-~--~l~~~~~-------~~~----~~~R~~~~~~~~~~~~~L   75 (113)
                      ..+.++++.+|+++.|+|.+.+.+. +.|.|+|.+.. .  .+..+..       +..    ..++|.+.     .+..|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-----~~~~L   79 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-----SQGRL   79 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-----TTCCE
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-----CCceE
Confidence            4456788999999999999998874 89999987532 1  2221100       000    11222243     23349


Q ss_pred             EEccCCCCCCEEEEEeecCC--CCeeEEEEeceecc
Q psy14080         76 QIKFLQKRDNGTYECQAQPY--TTTSHSQNAPGLGD  109 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~--~~~s~~~~L~V~g~  109 (113)
                      .|.+++.+|+|.|.|.+...  +..+..+.|.|...
T Consensus        80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  115 (231)
T 2pet_A           80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK  115 (231)
T ss_dssp             EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred             EEcccCcccCceEEEEEEecCCCceEEEEEEEEEec
Confidence            99999999999999999543  56677888888754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.36  E-value=5.7e-12  Score=89.25  Aligned_cols=81  Identities=14%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             eEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         15 ISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+++.+|++++|.|.+.+. +.+.|.|+|.  +..+       ..+.|+.+.    .+..+|.|.+++.+|+|.|.|.+.
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~--~~~~-------~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A           15 SWEVTGECNVLLKCKVANIKKETHIVWYKD--EREI-------SVDEKHDFK----DGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             EEEEETTTEEEEEEEEESCCTTCEEEEEET--TEEE-------CCSCC---------CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             eEEECCCCeEEEEEEEcCCCCCCEEEEEEC--CeEc-------CCCCcEEEE----CCeEEEEEccCCcccCeEEEEEEE
Confidence            5899999999999999887 6789999984  3333       235566554    256899999999999999999995


Q ss_pred             -CCCCeeEEEEeceec
Q psy14080         94 -PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 -~~~~~s~~~~L~V~g  108 (113)
                       ..+..+..+.|.|..
T Consensus        82 n~~g~~~~~~~l~v~~   97 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEA   97 (317)
T ss_dssp             SSSCEEEEEECCSTHH
T ss_pred             CCCCcEEEEEEEEEec
Confidence             445556666776653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.36  E-value=5.9e-12  Score=88.36  Aligned_cols=88  Identities=16%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ....++.+.+|++++|.|.+.+.+. .+.|+|.++..+        ..+.|+.+..  +....+|.|.+++.+|+|.|+|
T Consensus         9 ~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~--------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C   77 (291)
T 2wim_A            9 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKI--------ISTQRVVVQK--EGVRSRLTIYNANIEDAGIYRC   77 (291)
T ss_dssp             ESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBC--------CCBTTEEEEE--ETTEEEEEECSCCGGGCEEEEE
T ss_pred             EeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCc--------cCCCcEEEec--CCCEEEEEEccCCcccCEEEEE
Confidence            3445689999999999999998764 899998543222        2356887763  2346799999999999999999


Q ss_pred             eecC-CCCe-eEEEEeceecc
Q psy14080         91 QAQP-YTTT-SHSQNAPGLGD  109 (113)
Q Consensus        91 ~~~~-~~~~-s~~~~L~V~g~  109 (113)
                      .+.. .+.. +..+.|.|...
T Consensus        78 ~~~n~~g~~~~~~~~l~v~~~   98 (291)
T 2wim_A           78 QATDAKGQTQEATVVLEIYQK   98 (291)
T ss_dssp             EEECSSSCEEEEEEEEEEECC
T ss_pred             EEecccCceEEEEEEEEecCC
Confidence            9954 3333 56677777543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.36  E-value=4.1e-12  Score=84.36  Aligned_cols=77  Identities=12%  Similarity=-0.003  Sum_probs=61.4

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|++++|.|.+.+.+.+.+.|+|...               +...      ...+|.|.+++.+|+|.|+|.+
T Consensus       104 ~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~---------------~~~~------~~~~L~i~~v~~~d~G~Y~C~a  162 (184)
T 2ny1_B          104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRG---------------KNIQ------GGKTLSVSQLELQDSGTWTCTV  162 (184)
T ss_dssp             SSCSEEETTCCEEEEEECCTTCCCEEEEECTTS---------------CEEE------ESSEEEESSCCGGGCEEEEEEE
T ss_pred             CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCC---------------cccc------CceEEEEecCCcCCCeEEEEEE
Confidence            344578999999999999888889999997431               1111      2569999999999999999999


Q ss_pred             c-CCCCeeEEEEeceeccc
Q psy14080         93 Q-PYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~g~~  110 (113)
                      . .....+..+.|.|.|..
T Consensus       163 ~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          163 LQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             EETTEEEEEEEEEEEECCC
T ss_pred             EECCceEEEEEEEEEEecC
Confidence            5 45677888999998864

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.36  E-value=5.5e-12  Score=84.18  Aligned_cols=91  Identities=22%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             eecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCC-C----cEEEEEccCCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGS-D----DWNLQIKFLQKRD   84 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~-~----~~~L~I~~v~~~D   84 (113)
                      ...+++++.+|++++|.|.+. +.+.+.|.|+|.  +..+..+.     ..|+.+....+. .    ..+|.|.+++.+|
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~--g~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD--GQILELAD-----STQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             ECCCCEEECTTCCEEEEEEEEEESSCCCCEEEET--TEECCSCE-----EEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             cChhheEEecCCcEEEecccccCCCCcEEEEEEC--CEEcccCC-----CCceEEEEccccccceeeccEEEEEeccccC
Confidence            345678999999999999999 888889999983  33332110     124444321111 1    4699999999999


Q ss_pred             CEEEEEeecCC-C-CeeEEEEeceec
Q psy14080         85 NGTYECQAQPY-T-TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~-~-~~s~~~~L~V~g  108 (113)
                      +|.|.|.+... + ..+..+.|.|..
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  105 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGLEG  105 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             CcEEEEEEEeCCCceecccEEEEEec
Confidence            99999999543 2 223446676654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.36  E-value=1.9e-12  Score=95.46  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...+++.+|++++|.|.+.+ +.+.|.|+|.++. ++...    ..+.|+.+ .     +.+|.|.+++.+|+|.|+|.+
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~-~~~~~----~~~~r~~~-~-----~~~L~I~~v~~~D~G~Y~C~a  320 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNE-QVLSQ----GSNGSVSV-R-----NGDLFFKKVQVEDGGVYTCYA  320 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSC-BCCSC----CSSSSEEE-E-----TTEEEESSCCTTSCEEEEEEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCe-eEeec----ccCCceEe-e-----cCeEEEeecCcccCEEEEEEE
Confidence            35678999999999999998 8889999985432 22111    13458877 2     447999999999999999999


Q ss_pred             c-CCCCeeEEEEeceec
Q psy14080         93 Q-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~g  108 (113)
                      . ..+..+..+.|.|.+
T Consensus       321 ~N~~g~~~~~~~l~V~~  337 (361)
T 2xot_A          321 MGETFNETLSVELKVYN  337 (361)
T ss_dssp             ECSSCEEEEEEEEEEES
T ss_pred             ecCCCccEEEEEEEEEe
Confidence            5 556778888998865

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=91.41  Aligned_cols=83  Identities=12%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ...+.+|+++.|.|.+.+.+.+.+.|+|.  +..+       ..+.|+.+.    ....+|.|.+++.+|+|.|.|.+ +
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~--g~~~-------~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N  269 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPEPAISWFRN--GKLI-------EENEKYILK----GSNTELTVRNIINSDGGPYVCRATN  269 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSCCEEEEEET--TEEC-------CCTTTEEEC----STTCEEEEESCCSTTCEEEEEEEEE
T ss_pred             cceecCCCeEEEEEEeecCCCCeEEEEEC--CEEC-------cCCccEEEc----CCccEEEEeeCCcccCEEEEEEEEE
Confidence            45677899999999999888899999984  3332       235677653    23568999999999999999999 5


Q ss_pred             CCCCeeEEEEeceeccc
Q psy14080         94 PYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g~~  110 (113)
                      ..+..+..+.|.|.+-.
T Consensus       270 ~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          270 KAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             TTEEEEEEEEEEC----
T ss_pred             CCCceeeeEEEEEEEec
Confidence            66888888999887643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.36  E-value=3.6e-12  Score=92.91  Aligned_cols=86  Identities=17%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.......+.+.+|+++.|.|.+.+.+.+.|.|+|.  +..+        .++|+.+.     +. +|.|.+++.+|
T Consensus       308 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~--g~~~--------~~~~~~~~-----~~-~L~i~~~~~~d  371 (395)
T 1bih_A          308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN--AKPL--------SGGRATVT-----DS-GLVIKGVKNGD  371 (395)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEET--TEEC--------CSSSEEEE-----TT-EEEESSCCSTT
T ss_pred             CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEEC--CEEC--------CCCceEEE-----CC-EEEEeeCCccc
Confidence            333333333337889999999999999988889999984  3332        24488765     12 99999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEece
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      +|.|+|.+ +..+..+..+.|.|
T Consensus       372 ~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          372 KGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEccCCCceEEEEEEE
Confidence            99999999 56677788888877

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.35  E-value=9.6e-12  Score=87.63  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=61.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeE--EEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHI--LTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~--l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ....+.+|+++.|.|.+.+.+.+. +.|+|......  +... ...+.  .++...     ...+|.|.+++.+|+|.|.
T Consensus       196 ~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~L~I~~v~~~d~G~Y~  268 (290)
T 2o26_X          196 TSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR--GDFNYE-----RQETLTISSARVDDSGVFM  268 (290)
T ss_dssp             SBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE--ETTEEE-----EEEEEEESSCCSSSCEEEE
T ss_pred             CcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc--CceeeE-----EEEEEEEcCCCcccCeEEE
Confidence            345789999999999999888876 99999653310  1110 00011  111111     3569999999999999999


Q ss_pred             Eee-cCCCCeeEEEEeceecc
Q psy14080         90 CQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |.+ +..+..+..+.|.|.+.
T Consensus       269 C~a~N~~g~~~~~~~l~V~~~  289 (290)
T 2o26_X          269 CYANNTFGSANVTTTLKVVEK  289 (290)
T ss_dssp             EEEECSSCEEEEEEEECC---
T ss_pred             EEEeCCCCcEEEEEEEEEEeC
Confidence            999 45677888999999763

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.35  E-value=5.2e-12  Score=93.52  Aligned_cols=98  Identities=17%  Similarity=0.119  Sum_probs=68.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCC----CEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVK----VRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~----~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      +++.+..+++.+|++++|+|.+.+.+.    +.|.|||...   ...+.......  ...+||.+..  +.+.++|+|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~   81 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTIDP   81 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEESS
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeCC
Confidence            455677889999999999999987765    4899999752   22222211111  1257998764  34678999999


Q ss_pred             CCCCCCEEEEEeecCC-C-CeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPY-T-TTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-~-~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|+|.+... + ..+..+.|.|.+
T Consensus        82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  112 (438)
T 1qgc_4           82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKR  112 (438)
T ss_dssp             CCGGGCEEEEEEECSSTTCCBCCCEEEEECC
T ss_pred             CcCcCCeeEEEEEecCCCccccCceeEEecC
Confidence            9999999999999543 2 223445666643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.34  E-value=1.9e-12  Score=86.76  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             EEEecCCcEEEEEE-EccCCCCEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         16 STGFLAVFSYSDKT-VRDIVKVRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        16 ~tv~~G~~a~L~C~-v~~~~~~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.+|+++.|.|. +.+.+.+.+.|+|... ..+..+..  ....+.++...    ....+|.|.+++.+|+|.|+|.+
T Consensus       114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~-~~l~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a  188 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGI-SMLTADAKKTRAFMNSSFTID----PKSGDLIFDPVTAFDSGEYYCQA  188 (212)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTE-ESBC-----CBSCSSSCEEEC----TTTCCEEESSCCGGGCEEEEEEE
T ss_pred             cccCCCCeEEEEEEcccCcCCCEEEEEeCCc-ccccccccccccccCceeEec----CCCceEEEEecChhhCcEEEEEE
Confidence            56889999999999 6788888999998542 02221111  01123455543    24568999999999999999999


Q ss_pred             c-CCCCe--eEEEEeceeccc
Q psy14080         93 Q-PYTTT--SHSQNAPGLGDL  110 (113)
Q Consensus        93 ~-~~~~~--s~~~~L~V~g~~  110 (113)
                      . ..+..  +..+.|.|.+..
T Consensus       189 ~n~~g~~~~s~~~~l~V~~~~  209 (212)
T 1f97_A          189 QNGYGTAMRSEAAHMDAVELN  209 (212)
T ss_dssp             ECSSSCCEECCCEEEEEESSC
T ss_pred             ccccCCccccceEEEEEEEee
Confidence            5 44544  678888887643

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.34  E-value=3.9e-12  Score=86.26  Aligned_cols=85  Identities=13%  Similarity=0.225  Sum_probs=62.6

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+++.+|++++|.|.+.+.+.+.|.|+|.  +..+..+.    ...++...    .+.++|.|.+++.+|+|.|+|.+.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~--~~~~~~~~----~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~   96 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKN--GKEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVE   96 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEET--TEECCGGG----STTCCEEE----GGGTEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEEC--Cccccccc----cccceeee----cCcceEEEecCCcccCEEEEEEEe
Confidence            567899999999999999888889999984  33322110    11222332    246799999999999999999995


Q ss_pred             -CCCCeeEEEEeceec
Q psy14080         94 -PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 -~~~~~s~~~~L~V~g  108 (113)
                       ..+..+..+.|.|..
T Consensus        97 n~~~~~~~~~~l~V~~  112 (231)
T 3ojm_B           97 NEYGSINHTYHLDVVE  112 (231)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             cccCcccccEEEEEEc
Confidence             445667778888765

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.34  E-value=6.6e-12  Score=82.83  Aligned_cols=85  Identities=20%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ....+.++.+|+++.|.|.+.+.+.+.+.|+|... .+..      ..+.|+...     .+.+|.|.+++.+|+|.|.|
T Consensus         7 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~-~~~~------~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C   74 (189)
T 2v5t_A            7 EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE-EVTT------ISDNRFAML-----ANNNLQILNINKSDEGIYRC   74 (189)
T ss_dssp             ECCSSEEEETTSCEEECCEEECSSCCEEEEEC------CB------CCCTTEEEC-----TTSCEEETTCCGGGCEEEEE
T ss_pred             ccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCc-ccee------ccCCeEEEe-----cCCCEEEeeCCHhHCcEEEE
Confidence            34456789999999999999988888999998532 2211      136788765     24579999999999999999


Q ss_pred             eecCC-CC--eeEEEEecee
Q psy14080         91 QAQPY-TT--TSHSQNAPGL  107 (113)
Q Consensus        91 ~~~~~-~~--~s~~~~L~V~  107 (113)
                      .+... ..  .+..+.|.|.
T Consensus        75 ~~~~~~~~~~~~~~~~l~v~   94 (189)
T 2v5t_A           75 EGRVEARGEIDFRDIIVIVN   94 (189)
T ss_dssp             EEEETTTTEEEEEEEEEEEE
T ss_pred             EEEEcCCCceEEEEEEEEec
Confidence            99533 22  2344555544

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.34  E-value=2.7e-11  Score=85.53  Aligned_cols=81  Identities=11%  Similarity=-0.002  Sum_probs=62.1

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ++.+.........+.+|+++.|.|.+. +.+.+.+.|+|.  +..+       ....||.+..+...+..+|.|.+++.+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~--~~~i-------~~~~~~~~~~~~~~~~~~L~i~~~~~~  176 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN--EKEI-------FEGPKYKMHIDRNTGIIEMFMEKLQDE  176 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEET--TEEE-------CSSSSCEEEEETTTTEEEEEESCCCGG
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEEC--CEEC-------eeCCcEEEEEccCCCEEEEEEccCCcc
Confidence            333333333478899999999999999 778899999984  3333       245788777555567788999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|.|.|.+..
T Consensus       177 d~G~Y~C~~~~  187 (312)
T 2y23_A          177 DEGTYTFQLQD  187 (312)
T ss_dssp             GCEEEEEEEES
T ss_pred             cCEeEEEEEEe
Confidence            99999999964

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.34  E-value=9.1e-12  Score=83.65  Aligned_cols=90  Identities=12%  Similarity=-0.055  Sum_probs=61.5

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..++..... .+.+|++++|.|.+.+ +.+.+.|+|.......         + +..  ........+|.|.+++.+|
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~---------~-~~~--~~~~~~~~~L~i~~v~~~D   69 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPW---------D-RQN--PLEPKNKARFSIPSMTEDY   69 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCS---------E-EEC--CCSSSSEEEEEESSCCGGG
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcc---------c-ccc--cccCCceEEEEeccCCccc
Confidence            45555555555 8899999999999988 5679999985421100         0 000  0012346799999999999


Q ss_pred             CEEEEEeecC-CC--CeeEEEEeceec
Q psy14080         85 NGTYECQAQP-YT--TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~-~~--~~s~~~~L~V~g  108 (113)
                      +|.|.|.+.. .+  ..+..+.|.|.+
T Consensus        70 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           70 AGRYRCYYRSPVGWSQPSDPLELVMTG   96 (196)
T ss_dssp             CEEEEEEEEETTEEBCCCCCEEEEEEC
T ss_pred             CceEEEEEeCCCcccCCCccEEEEecC
Confidence            9999999953 32  345667777765

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.33  E-value=3.5e-12  Score=87.74  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCe---------EEEe----cceEEcC--CCCEEEEEeCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWH---------ILTS----GVLTYTN--DARFQVIHTDGS   70 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~---------~l~~----~~~~~~~--~~R~~~~~~~~~   70 (113)
                      +.+.......+.+.+|+++.|.|.+.+.+.+.|.|||.....         .+..    +......  ..|....     
T Consensus       136 ~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  210 (250)
T 2fbo_J          136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-----  210 (250)
T ss_dssp             SCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-----
T ss_pred             CeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-----
Confidence            344444555677888999999999999888899999964210         0000    0000000  1122211     


Q ss_pred             CcEEEEEccCCCCCCEEEEEeecC-C---CCeeEEEEece
Q psy14080         71 DDWNLQIKFLQKRDNGTYECQAQP-Y---TTTSHSQNAPG  106 (113)
Q Consensus        71 ~~~~L~I~~v~~~D~G~Y~C~~~~-~---~~~s~~~~L~V  106 (113)
                      +..+|.|.+++.+|+|.|+|.+.. .   +..+..+.|.|
T Consensus       211 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V  250 (250)
T 2fbo_J          211 GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV  250 (250)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred             CccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence            346999999999999999999954 2   34455666554

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.33  E-value=3.6e-12  Score=90.51  Aligned_cols=93  Identities=13%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             ceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC--eEE-Eec-c--eEE--cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW--HIL-TSG-V--LTY--TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~--~~l-~~~-~--~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .++++.+|++|+|.|.+.... .+.|.|+|.++.  ..+ ... .  ...  ....|+.+. +...++++|+|.+++.+|
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFK-NYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEES-CCSSSBCCEEECSCCGGG
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEee-ccCCCceEEEEccCCHHH
Confidence            457899999999999997543 356999997642  111 111 0  111  124576653 234467899999999999


Q ss_pred             CEEEEEeecCC--CCeeEEEEecee
Q psy14080         85 NGTYECQAQPY--TTTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~~~~--~~~s~~~~L~V~  107 (113)
                      +|.|+|.+...  +..+..+.+.+.
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~  110 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVL  110 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEee
Confidence            99999999543  344455555544

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.33  E-value=1.9e-12  Score=87.59  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             ceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         14 QISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ....+.+|+++.|.|.+ .+.+.+.+.|+|.  +..+... ...+..+.|+...     .+.+|.|.+++.+|+|.|+|.
T Consensus       116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~  188 (217)
T 2vr9_A          116 KDTRVAKGETALLECGPPKGIPEPTLIWIKD--GVPLDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCI  188 (217)
T ss_dssp             CCEEECTTSCEEECCBCCCEESCCEEEEEET--TEEECCCCCC---CCCSEEEE-----TTTEEEESSCCSTTCEEEEEE
T ss_pred             CccEEcCCCeEEEEEECCCCCCCCeEEEEEC--CcCCCcccccccccCCcEEec-----CCCcEEEeeCCHHHCeEEEEE
Confidence            45678999999999999 7888889999984  3333211 1112245677665     244899999999999999999


Q ss_pred             ec-CCCCeeEE-EEecee
Q psy14080         92 AQ-PYTTTSHS-QNAPGL  107 (113)
Q Consensus        92 ~~-~~~~~s~~-~~L~V~  107 (113)
                      +. ..+..+.. +.|.+.
T Consensus       189 a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          189 AQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EEcccceeccccEEEEEE
Confidence            94 44544333 344443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.33  E-value=1.3e-11  Score=95.26  Aligned_cols=94  Identities=14%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+.+.........+.+|+++.|.|.+.+.+.+.|.|+|..  ..+       ....|+.+...  .....|.|.+++.+
T Consensus       289 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~--~~l-------~~~~~~~~~~~--~~~~~L~i~~v~~~  357 (570)
T 3b43_A          289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE--TEI-------QESSKFRMSFV--ESVAVLEMYNLSVE  357 (570)
T ss_dssp             CCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETT--EEC-------CCSSSEEEEEE--TTEEEEEEESCCGG
T ss_pred             cCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECC--EEC-------CCCCcEEEEEE--CCEEEEEECCCCcc
Confidence            45555555555556889999999999999999999999843  222       23456665432  34678999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |+|.|.|.+ +..+..+..+.|.|..
T Consensus       358 D~G~Y~C~a~N~~g~~~~~~~l~V~~  383 (570)
T 3b43_A          358 DSGDYTCEAHNAAGSASSSTSLKVKE  383 (570)
T ss_dssp             GCEEEEEEEEBTTBCCEEEEEECEEC
T ss_pred             cCEEEEEEEEeCCCEEEEEEEEEecC
Confidence            999999999 5567777888898875

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.33  E-value=4.2e-13  Score=91.17  Aligned_cols=95  Identities=8%  Similarity=0.043  Sum_probs=64.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCC-----CEEEEEecCCCe-EEEec-ceE--EcCCCCEEEEEe-CCCCcEEEEEccCCCC
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVK-----VRVSWVRRRDWH-ILTSG-VLT--YTNDARFQVIHT-DGSDDWNLQIKFLQKR   83 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~-----~~V~W~k~~~~~-~l~~~-~~~--~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   83 (113)
                      +.+++.+|++++|+|.+.+.+.     +.|.|+|.+... ++... ...  ....+|+.+..+ ...++++|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3467889999999999987643     689999976433 32221 111  122467765421 1224789999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEeceec
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      |+|.|+|.+......+..+.|.|.+
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~l~V~~  107 (222)
T 4i0k_A           83 DEGSYTCFVSIQDFDSAAVSLQVAA  107 (222)
T ss_dssp             GCSCEEEEEEECCCCCCCCCCCCCB
T ss_pred             cCEEEEEEEEeCCCceEEEEEEEEc
Confidence            9999999996544445556666654

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.33  E-value=4.9e-12  Score=90.11  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCeE------EE-ecceE-Ec--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHI------LT-SGVLT-YT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~------l~-~~~~~-~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|.. .+.+|+++.|.|++++..  ++.++|+||.+++-      +. .+..+ +.  -.+||.+..+..++...|++.
T Consensus         6 eSG~~-lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~   84 (254)
T 4f9p_D            6 QSGAE-VVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLS   84 (254)
T ss_dssp             ECCCE-EECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCc-eECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEc
Confidence            34433 478999999999999764  56899999986431      11 12222 22  247999998888999999999


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      +++.||+|+|+|+-.
T Consensus        85 sL~~eDTAvYYCAr~   99 (254)
T 4f9p_D           85 SLTSDDSAVYFCARS   99 (254)
T ss_dssp             SCCGGGCEEEECEES
T ss_pred             cCCCCCCEEEEEEec
Confidence            999999999999863

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.33  E-value=2e-11  Score=85.12  Aligned_cols=80  Identities=13%  Similarity=-0.004  Sum_probs=60.6

Q ss_pred             cceEEEecCCcEEEEEEEccCCCC--EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKV--RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~--~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ..++++..|++++|.|.+ +.+.+  .|.|+|.+...            +|....    .....|.|.+++.+|+|.|.|
T Consensus        14 ~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l------------~~~~~~----~~~~~L~I~~v~~~d~G~Y~C   76 (210)
T 1gsm_A           14 EPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL------------GAVQSD----TGRSVLTVRNASLSAAGTRVC   76 (210)
T ss_dssp             CSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT------------CCEEEE----SSEEEEEECSCCGGGCEEEEE
T ss_pred             CCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc------------CcEEec----CCccEEEECccCcccCceEEE
Confidence            345799999999999999 77777  99999854210            222222    246789999999999999999


Q ss_pred             eecCC-CCeeEEEEeceecc
Q psy14080         91 QAQPY-TTTSHSQNAPGLGD  109 (113)
Q Consensus        91 ~~~~~-~~~s~~~~L~V~g~  109 (113)
                      .+... ...+..++|.|.+.
T Consensus        77 ~a~n~~~~~~~~~~ltV~~~   96 (210)
T 1gsm_A           77 VGSCGGRTFQHTVQLLVYAF   96 (210)
T ss_dssp             EEEETTEEEEEEEEEEEEBC
T ss_pred             EEEeCCCceEEEEEEEEEec
Confidence            99644 45567889988763

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=93.29  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=62.4

Q ss_pred             ceEEEecCCcEEEEEEEccCC--------------CCEEEEEecCCC---eEEEe-cceE--E-c-CCCCEEEE-EeC--
Q psy14080         14 QISTGFLAVFSYSDKTVRDIV--------------KVRVSWVRRRDW---HILTS-GVLT--Y-T-NDARFQVI-HTD--   68 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~--------------~~~V~W~k~~~~---~~l~~-~~~~--~-~-~~~R~~~~-~~~--   68 (113)
                      ..+.+.+|++|+|+|.++..+              ...|.|||+..+   .++.+ +...  . . ...|.... .++  
T Consensus       166 ~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~  245 (401)
T 3f8u_B          166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE  245 (401)
T ss_dssp             SSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCC
T ss_pred             CcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccc
Confidence            347899999999999997432              468999999743   33333 2111  0 0 11222111 111  


Q ss_pred             ----CCCcEEEEEccCCCCCCEEEEEeecCC-CCeeEEEEeceec
Q psy14080         69 ----GSDDWNLQIKFLQKRDNGTYECQAQPY-TTTSHSQNAPGLG  108 (113)
Q Consensus        69 ----~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~g  108 (113)
                          ..++.+|+|.+++.+|+|.|+|.+... ...+..+.|.|.+
T Consensus       246 ~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  290 (401)
T 3f8u_B          246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK  290 (401)
T ss_dssp             SSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             cccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc
Confidence                136789999999999999999999643 3455667787765

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.32  E-value=8.6e-12  Score=83.71  Aligned_cols=90  Identities=9%  Similarity=-0.059  Sum_probs=63.5

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCC----CeEEEec--ceE--Ec--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD----WHILTSG--VLT--YT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~----~~~l~~~--~~~--~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+.+|++++|+|...+.+...|.|||...    ..++...  ...  ..  ...|+.+.     .+.+|.|.+++.+|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~~v~~~D   82 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQMITMKD   82 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TTSCEEECSCCGGG
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cCCeEEEccccccC
Confidence            3578999999999997777778999998642    2232221  111  11  24577664     34589999999999


Q ss_pred             CEEEEEeecCC--CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQPY--TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~~--~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+...  ...+..+.|.|...
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~  109 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATVRFHVHQP  109 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEECC
T ss_pred             CeEEEEEEEcccCceeEEEEEEEeccC
Confidence            99999999654  35567778888653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.32  E-value=6.3e-12  Score=85.82  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=61.7

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .|..++...+.+.++.+|++++|.|.+.+.+.+. +.|||.  +..+.        .           ...+|.|.+++.
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~--g~~l~--------~-----------~~~~L~i~~v~~   63 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHN--ESLIS--------S-----------QASSYFIDAATV   63 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEET--TEEES--------C-----------CSSEEEESSCCG
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEEC--CEEcc--------c-----------CccEEEEecccc
Confidence            3666677777778999999999999999876654 999984  22221        0           126999999999


Q ss_pred             CCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+.. ...+..+.|.|..
T Consensus        64 ~D~G~Y~C~a~n-~~~s~~~~l~V~~   88 (204)
T 3sgj_C           64 DDSGEYRCQTQL-STLSDPVQLEVHI   88 (204)
T ss_dssp             GGCEEEEEEETT-SBCCCCEEEEEEC
T ss_pred             cCCEEEEEEeCC-CcccccEEEEEec
Confidence            999999999964 3445556776654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.31  E-value=2.2e-12  Score=87.46  Aligned_cols=94  Identities=12%  Similarity=0.107  Sum_probs=65.5

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe---CCCCcEEEEEccCCCCCC
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT---DGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~D~   85 (113)
                      .......+.+|+++.|.|.+.+.+.+.+.|+|..  ++..+..+     ...+......   ......+|.|.+++.+|+
T Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  197 (231)
T 3ojm_B          123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD-----GLPYLKVLKHSGINSSNAEVLALFNVTEADA  197 (231)
T ss_dssp             TCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTT-----SCBCEEEEEECSTTCSCTTEEEECSCCGGGC
T ss_pred             ccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCC-----CcceEeEecccccccCCccEEEEecCCHHHC
Confidence            3456678999999999999999888899999942  12211110     0111111111   123446899999999999


Q ss_pred             EEEEEeec-CCCCeeEEEEeceecc
Q psy14080         86 GTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        86 G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |.|+|.+. ..+..+..+.|.|.+.
T Consensus       198 G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          198 GEYICKVSNYIGQANQSAWLTVLPK  222 (231)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEEEEEEEeccceEeeEEEEEEecC
Confidence            99999994 5567788899998764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.31  E-value=5.3e-12  Score=88.50  Aligned_cols=87  Identities=14%  Similarity=0.074  Sum_probs=61.8

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      |.|+.+++..+..+++.+|++++|.|.+.+    .|.|++...              .++...  ......+|.|.+++.
T Consensus         1 a~p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~--------------~~~~~~--~~~~~~~L~i~~~~~   60 (289)
T 3ejj_X            1 ADPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPIS--------------PYWTLD--PESPGSTLTTRNATF   60 (289)
T ss_dssp             ---CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCS--------------SSSEEC--CCSSCCEEEESSCCG
T ss_pred             CCCCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCC--------------ceEEEe--ccCCccEEEEeeecc
Confidence            468888888889999999999999999987    399996431              111111  223567999999999


Q ss_pred             CCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         83 RDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +|+|.|.|.+. .....+..+.|.|...
T Consensus        61 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~~   88 (289)
T 3ejj_X           61 KNTGTYRCTELEDPMAGSTTIHLYVKDP   88 (289)
T ss_dssp             GGCEEEEEECCC-----CEEEEEEECCS
T ss_pred             ccCEEEEEEEeccCCcceeEEEEEEeCC
Confidence            99999999984 4455677788887653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.31  E-value=6.9e-12  Score=83.09  Aligned_cols=82  Identities=23%  Similarity=0.246  Sum_probs=61.4

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|+++.|.|.+.+.+.+.+.|+|..  ..+       ..+.|+...     .+.+|.|.+++.+|+|.|+|.+
T Consensus       107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~--~~~-------~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a  172 (192)
T 2iep_A          107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD--SAL-------RENSRIAVL-----ESGSLRIHNVQKEDAGQYRCVA  172 (192)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETT--EEC-------CCCSSEEEC-----TTSCEEESSCCGGGCEEEEEEE
T ss_pred             CcceEEeCCCcEEEEEEEeccCCceEEEEeCC--EEc-------cCCCcEEEe-----cCCcEEEecCChhhCEEEEEEE
Confidence            34578899999999999998888899999843  222       235566654     2347999999999999999999


Q ss_pred             c-CCCCe-eEEEEeceec
Q psy14080         93 Q-PYTTT-SHSQNAPGLG  108 (113)
Q Consensus        93 ~-~~~~~-s~~~~L~V~g  108 (113)
                      . ..+.. +..+.|.|..
T Consensus       173 ~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          173 KNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCcEEEEEEEEEEEe
Confidence            5 44433 4567777753

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.31  E-value=1e-11  Score=85.11  Aligned_cols=86  Identities=12%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...+++.+|+++.|.|.+.+.+.+.|.|+|..  ..+....    ...+....    ....+|.|.+++.+|+|.|+|.+
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~--~~~~~~~----~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~   91 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNG--REFRGEH----RIGGIKLR----HQQWSLVMESVVPSDRGNYTCVV   91 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETT--EECCGGG----STTCCEEE----GGGTEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECC--cccCCCC----cccceeee----ccceEEEEEeCCcccCEEEEEEE
Confidence            35688999999999999998888899999843  2222110    11122332    24669999999999999999999


Q ss_pred             c-CCCCeeEEEEeceec
Q psy14080         93 Q-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~g  108 (113)
                      . ..+..+..+.|.|..
T Consensus        92 ~~~~~~~~~~~~l~V~~  108 (241)
T 3grw_A           92 ENKFGSIRQTYTLDVLE  108 (241)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             eecCCceEEEEEEEEec
Confidence            5 445667778888765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.31  E-value=9e-12  Score=83.81  Aligned_cols=83  Identities=11%  Similarity=-0.107  Sum_probs=55.6

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ..+.+|++++|.|.+.+. .+.+.|+|... .+...       ..++.... ......+|.|.+++.+|+|.|+|.+...
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~-~~~~~-------~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  179 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGE-DEHPQ-------CLNSQPHA-RGSSRAIFSVGPVSPSRRWWYRCYAYDS  179 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC-------C-------EEEC-------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCC-ccCCc-------cccccccC-CCcceeEEEecccCcccCeEEEEEEEeC
Confidence            578899999999999887 67999998532 22110       11111111 1223579999999999999999999532


Q ss_pred             --CC----eeEEEEeceec
Q psy14080         96 --TT----TSHSQNAPGLG  108 (113)
Q Consensus        96 --~~----~s~~~~L~V~g  108 (113)
                        +.    .|..+.|.|.|
T Consensus       180 ~~~~~~s~~S~~~~l~V~g  198 (198)
T 1ugn_A          180 NSPYEWSLPSDLLELLVLG  198 (198)
T ss_dssp             TSTTEECCCCCCEEEEEEC
T ss_pred             CCCccccCcCceEEEEecC
Confidence              22    27788888876

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.31  E-value=1.8e-11  Score=82.25  Aligned_cols=89  Identities=15%  Similarity=0.047  Sum_probs=61.0

Q ss_pred             eeEeecceEEE-ecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          8 ILTAFGQISTG-FLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         8 i~~~~~~~~tv-~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      |....|..+++ -.|+.+.|.|.+.+. +.+.|.|||..  ..+       ..++|+.+..  .++..+|.|.+++.+|+
T Consensus         3 v~~~~g~~v~l~c~~~~~~l~C~~~~~~p~~~i~W~~~g--~~i-------~~~~~~~~~~--~~~~~~L~i~~v~~~D~   71 (212)
T 2r15_A            3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG--SAI-------RYSDRVKTGV--TGEQIWLQINEPTPNDK   71 (212)
T ss_dssp             ---CCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEETT--EEC-------CCCSSEEEEE--ETTEEEEEEESCCGGGC
T ss_pred             ccceecCcEEEEEcCceEEEEEEEeccCCCceEEEEECC--EEc-------cCCCeEEEEE--eCCEEEEEECCCCcccC
Confidence            34445555443 357888999998875 47899999843  222       2357887653  23567899999999999


Q ss_pred             EEEEEeecC-CCCeeEEEEecee
Q psy14080         86 GTYECQAQP-YTTTSHSQNAPGL  107 (113)
Q Consensus        86 G~Y~C~~~~-~~~~s~~~~L~V~  107 (113)
                      |.|+|.+.. .+..+..+.|.|.
T Consensus        72 G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           72 GKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             EEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEEEEEEecCCcceEEEEEEEEe
Confidence            999999954 4455666676654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.31  E-value=1.1e-11  Score=91.22  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+.......+.+.+|+++.|.|.+.+.+.+.+.|+|.++. .+.         .+....    ..+.+|.|.+++.+|+|
T Consensus       206 ~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~-~~~---------~~~~~~----~~~~~L~I~~v~~~D~G  271 (384)
T 3kld_A          206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK-PIA---------RKARRH----KSNGILEIPNFQQEDAG  271 (384)
T ss_dssp             EEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCC-CCC---------TTCEEC----TTSCEEEECSCCGGGCE
T ss_pred             ceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCc-ccc---------ccceec----CCCcEEEECCCChhhCE
Confidence            3444456677899999999999999999999999985432 111         111111    13558999999999999


Q ss_pred             EEEEee-cCCCCeeEEEEeceec
Q psy14080         87 TYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        87 ~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      .|+|.+ +..+.....+.|.|..
T Consensus       272 ~Y~C~a~N~~G~~~~~~~l~v~~  294 (384)
T 3kld_A          272 SYECVAENSRGKNVAKGQLTFYA  294 (384)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEEEEec
Confidence            999999 4556666677777754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.30  E-value=1.4e-11  Score=87.98  Aligned_cols=88  Identities=11%  Similarity=-0.052  Sum_probs=63.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+.+.........+.+|++++|.|.+.+.|.+ .|.|+|.+..  +         .......      +.+|.|.+++.+
T Consensus       216 ~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~--l---------~~~~~~~------~~~L~i~~v~~~  278 (313)
T 4fqp_A          216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP--L---------PPFAVAQ------GAQLLIRPVDKP  278 (313)
T ss_dssp             EEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBS--C---------CTTEEEE------TTEEEECCCSSC
T ss_pred             CCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEE--C---------CCceEEe------CCEEEECcCChh
Confidence            44444444444566779999999999988877 6999985421  1         1111111      338999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |+|.|.|.+ +..+..+..+.|.|...
T Consensus       279 d~G~Y~C~a~N~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          279 INTTLICNVTNALGARQAELTVQVKEG  305 (313)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             hCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence            999999999 56688888899998753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.30  E-value=5.1e-12  Score=88.00  Aligned_cols=97  Identities=9%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             ecceEEEecCCcEEEEEEE---ccCCCCEEEEEecCC-----CeEEEecce----EEcCC----CCEEEEEeCCCCcEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTV---RDIVKVRVSWVRRRD-----WHILTSGVL----TYTND----ARFQVIHTDGSDDWNL   75 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v---~~~~~~~V~W~k~~~-----~~~l~~~~~----~~~~~----~R~~~~~~~~~~~~~L   75 (113)
                      ....+.+.+|++++|.|.+   .+.+.+.|.|+|.++     ..++.....    ....+    .|+.+..+......+|
T Consensus       124 ~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  203 (268)
T 3mj6_A          124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI  203 (268)
T ss_dssp             CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCE
T ss_pred             CCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEE
Confidence            3456789999999999999   555778999999643     122221100    01112    2444432222356799


Q ss_pred             EEccCCCCCCEEEEEeec-CCCCeeEEEEeceec
Q psy14080         76 QIKFLQKRDNGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      .|.+++.+|+|.|+|.+. ..+..+..+.|.|..
T Consensus       204 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence            999999999999999994 445667888888843

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.30  E-value=5e-12  Score=84.86  Aligned_cols=91  Identities=16%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             eEEEecCCcEEEEEEEccC----CCCEEEEEecCCCeEE-EecceEEc---CCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         15 ISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDWHIL-TSGVLTYT---NDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~~~l-~~~~~~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+++.+|++|+|+|.+...    +.+.+.|+|.. ..+. ........   -..|..+.   ..++++|.|.+++.+|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~-~~i~~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~D~G   78 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEK-KMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEG   78 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETT-EEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCC-cEEEEEeCCceeecCcccceeEEc---cCCCcEEEEecccchhCe
Confidence            4688999999999999642    44688998843 2222 11111100   12455542   124679999999999999


Q ss_pred             EEEEeecCC-CCe-----eEEEEeceecc
Q psy14080         87 TYECQAQPY-TTT-----SHSQNAPGLGD  109 (113)
Q Consensus        87 ~Y~C~~~~~-~~~-----s~~~~L~V~g~  109 (113)
                      .|.|.+... +..     +..+.|.|.+.
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           79 TYECVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEEEEcCCCCccccccccEEEEEEcCC
Confidence            999999542 222     45778888764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.30  E-value=6.1e-12  Score=84.40  Aligned_cols=83  Identities=18%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             cceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .....+.+|+++.|.|.+ .+.+.+.+.|+|.  +..+.      ..+.|+...      +.+|.|.+++.+|+|.|+|.
T Consensus       118 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~--~~~l~------~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~  183 (212)
T 2v9r_A          118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKD--GSPLD------DKDERITIR------GGKLMITYTRKSDAGKYVCV  183 (212)
T ss_dssp             CCCEEEETTSCEEEECBCCCEESCCEEEEEET--TEEEC------TTSTTEEEE------TTEEEESSCCGGGCEEEEEE
T ss_pred             CCceEecCCCcEEEEEecCCCCCCCEEEEEEC--CccCC------CCcceEEcc------CCeEEEeeCCHhhCeeEEEE
Confidence            345688999999999998 7888889999984  33332      124566543      34899999999999999999


Q ss_pred             ec-CCCCe-eEEEEeceecc
Q psy14080         92 AQ-PYTTT-SHSQNAPGLGD  109 (113)
Q Consensus        92 ~~-~~~~~-s~~~~L~V~g~  109 (113)
                      +. ..+.. +..+.|.|.+.
T Consensus       184 a~N~~g~~~s~~~~l~V~~~  203 (212)
T 2v9r_A          184 GTNMVGERESEVAELTVLER  203 (212)
T ss_dssp             EEETTEEEECCCEEEEEEC-
T ss_pred             EecccCceecceEEEEEEeC
Confidence            95 44443 33478888754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.30  E-value=8.7e-12  Score=83.34  Aligned_cols=81  Identities=16%  Similarity=-0.000  Sum_probs=58.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..++..... .+.+|++++|.|.+.+ +.+.+.|||....                ...     ...+|.|.+++.+|
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~----------------~~~-----~~~~L~i~~v~~~D   63 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS----------------RYQ-----DQAVLFIPAMKRSL   63 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC----------------CEE-----SSSEEEESSCCGGG
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc----------------ccC-----cccEEEECcCChhh
Confidence            44444444443 8999999999999987 6679999985421                111     35689999999999


Q ss_pred             CEEEEEeecCCC---CeeEEEEeceec
Q psy14080         85 NGTYECQAQPYT---TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~---~~s~~~~L~V~g  108 (113)
                      +|.|.|.+....   ..+..+.|.|.+
T Consensus        64 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           64 AGRYRCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             CEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred             CceEEEEEEcCCCccCCCCCEEEEecC
Confidence            999999995432   334556777754

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.30  E-value=6.3e-11  Score=82.99  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             ceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ....+.+|+++.|.|.+.+ .+.+.+.|+|..  ..+............+.       ...+|.|.+++.+|+|.|.|.+
T Consensus       194 ~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a  264 (289)
T 3ejj_X          194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGD--TKLEIPLNSDFQDNYYK-------KVRALSLNAVDFQDAGIYSCVA  264 (289)
T ss_dssp             SSEECCSSSCEEEEEEEEESSSCCEEEEEETT--EECCCCEEEEECSSSEE-------EEEEEEESSCCSSSCEEEEEEE
T ss_pred             CceEEEeCCcEEEEEEeCCCCCceEEEEEECC--EEeeccCCcccccceEE-------eeEEEEEEeecccCCEEEEEEE
Confidence            3456678999999999998 678899999853  22211110000111211       2569999999999999999999


Q ss_pred             -cCCCCeeEEEEeceeccc
Q psy14080         93 -QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g~~  110 (113)
                       +..+..+..+.|.+...-
T Consensus       265 ~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          265 SNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             ECSSCEEEEEEEEECC---
T ss_pred             EcCCCCccccEEEEEEecc
Confidence             556888889999887643

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.29  E-value=1.3e-11  Score=87.84  Aligned_cols=101  Identities=10%  Similarity=-0.042  Sum_probs=67.1

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCC----CCcEEEEEccC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDG----SDDWNLQIKFL   80 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~----~~~~~L~I~~v   80 (113)
                      |+.+.......+.+.+|+++.|.|.+.+.+.+.+.|+|.  +..+..+... ....++.+....+    ....+|.|.++
T Consensus       208 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~--g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v  284 (315)
T 1itb_B          208 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWN--GSVIDEDDPV-LGEDYYSVENPANKRRSTLITVLNISEI  284 (315)
T ss_dssp             CCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEET--TEECCTTCSS-EEEEEEEECCSSCGGGEEEEEEEEESSC
T ss_pred             CCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEEC--CEECCccccc-ccccceeeeccCCCceeEEEEEEEEeec
Confidence            444544444446789999999999999998899999983  3332211100 0011122110000    12459999999


Q ss_pred             CCCC-CEEEEEee-cCCCCeeEEEEeceec
Q psy14080         81 QKRD-NGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D-~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      +.+| +|.|+|.+ +..+..+..+.|.|+.
T Consensus       285 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          285 ESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             CGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            9999 99999999 5668888899998864

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.29  E-value=7.7e-12  Score=82.76  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .|+..++.....+++.+|++++|.|.+.+.+.+. +.|+|..  ..+.                   ....+|.|.+++.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~--~~~~-------------------~~~~~L~i~~~~~   63 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE--SLIS-------------------SQASSYFIDAATV   63 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETT--EEEE-------------------SSCSEEEESSCCG
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECC--EEcc-------------------CCceEEEEeCCCc
Confidence            4666667777778999999999999998876555 7899842  2221                   1355999999999


Q ss_pred             CCCEEEEEeecCCCCeeEEEEecee
Q psy14080         83 RDNGTYECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      +|+|.|.|.+.. ...+..++|.|.
T Consensus        64 ~d~G~Y~C~~~n-~~~s~~~~l~V~   87 (175)
T 1fnl_A           64 NDSGEYRCQTNL-STLSDPVQLEVH   87 (175)
T ss_dssp             GGCEEEEEECSS-SCCCCCEEEEEE
T ss_pred             ccCEEEEEEeeC-CcccccEEEEEe
Confidence            999999999964 223445666665

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.29  E-value=5.5e-12  Score=83.65  Aligned_cols=70  Identities=21%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|+++.|.|.+.+.+.+.+.|+|..  ..+..     ..+.|+...     .+.+|.|.+++.+|+|.|+|.+
T Consensus       107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~--~~~~~-----~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a  174 (191)
T 1epf_A          107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG--RDVIL-----KKDVRFIVL-----SNNYLQIRGIKKTDEGTYRCEG  174 (191)
T ss_dssp             CSSEECCTTSCEEECCEEECSSCCEEEEEETT--EEGGG-----GCCTTEEEC-----TTSCEEETTCCGGGCEEEEEEE
T ss_pred             CCcEeecCCCeEEEEEEECCCCCCEEEEEECC--EEeec-----cCCceEEEe-----cCCeEEECCCChhhCEEEEEEE
Confidence            34567889999999999998888999999843  22211     235677764     2347999999999999999999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus       175 ~n  176 (191)
T 1epf_A          175 RI  176 (191)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.29  E-value=1.3e-11  Score=90.12  Aligned_cols=84  Identities=18%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+..+.+|++++|.|.+.+.+.+.+.|+|..  ..+       ....++.+.     ...+|.|.+++.+|+|.|.|.
T Consensus       318 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g--~~~-------~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~  383 (403)
T 3laf_A          318 HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG--DVV-------IPSDYFQIV-----GGSNLRILGVVKSDEGFYQCV  383 (403)
T ss_dssp             CCCCEECCTTCCEEECCEEEEESCCEEEEEETT--EEC-------CCSSSEEEE-----TTTEEEESSCCGGGCEEEEEE
T ss_pred             cCcceEEecCCeEEEEEEEeeccCCEEEEEECC--EEC-------CCCCcEEEe-----cCccEEEeccccccCEEEEEE
Confidence            345567889999999999999888999999843  222       235566654     245899999999999999999


Q ss_pred             e-cCCCCeeEEEEeceecc
Q psy14080         92 A-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g~  109 (113)
                      + +..+..+..+.|.|.+.
T Consensus       384 a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          384 AENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEETTEEEEEEEEEECCCC
T ss_pred             EEcCCceEEEEEEEEEeCC
Confidence            9 56678888899998763

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.29  E-value=7.4e-12  Score=83.79  Aligned_cols=79  Identities=9%  Similarity=0.078  Sum_probs=59.4

Q ss_pred             EEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cC
Q psy14080         17 TGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QP   94 (113)
Q Consensus        17 tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~   94 (113)
                      .+.+|+++.|.|.+ .+.+.+.+.|+|..+...+.        ..+..     ...+.+|.|.+++.+|+|.|+|.+ +.
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~--------~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~  198 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP--------TPWLA-----EMTSPVISVKNASSEYSGTYSCTVQNR  198 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC--------GGGGG-----GTTSSEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC--------cccee-----ccCCCEEEEecCCHHHCEEEEEEEEcC
Confidence            46789999999999 78888899999964332221        11110     112349999999999999999999 45


Q ss_pred             CCCeeEEEEeceec
Q psy14080         95 YTTTSHSQNAPGLG  108 (113)
Q Consensus        95 ~~~~s~~~~L~V~g  108 (113)
                      .+..+..+.|.|..
T Consensus       199 ~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          199 VGSDQCMLRLDVVP  212 (214)
T ss_dssp             SCEEEEEEEECCBC
T ss_pred             CCcEEEEEEEEEeC
Confidence            67788899999874

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.29  E-value=2.7e-11  Score=81.43  Aligned_cols=90  Identities=11%  Similarity=-0.037  Sum_probs=59.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..++.... ..+.+|++++|.|.+.+.+. .+.|||......  .+.    ...      .......+|.|.+++.+|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~--~~~----~~~------~~~~~~~~L~i~~v~~~D   69 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEP--WDT----QNP------LEPKNKARFSIPSMTEHH   69 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSC--SEE----ECC------CSSTTEEEEEESSCCGGG
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCC--ccc----ccc------cCCccccEEEeccCChhH
Confidence            3334444444 37899999999999987665 899998542110  000    000      012356799999999999


Q ss_pred             CEEEEEeecCC-C--CeeEEEEeceec
Q psy14080         85 NGTYECQAQPY-T--TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~-~--~~s~~~~L~V~g  108 (113)
                      +|.|+|.+... +  ..+..+.|.|.+
T Consensus        70 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           70 AGRYRCYYYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             CEEEEEEEEETTEECBCCCCEEEEEEC
T ss_pred             CeEEEEEEeCCCCcCCcCccEEEEecC
Confidence            99999999532 2  234567777765

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.28  E-value=2.1e-11  Score=77.20  Aligned_cols=93  Identities=15%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             ceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...++..|+++.|.|.+.+- +.|.|.|.|............   ...|-......+-..+.|+|.+|.++|+|.|.|.+
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~---~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsA   98 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVG---PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCST   98 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCB---TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEE
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccc---eeeecceeccCCceeEEEEEeeEEEcCCccEEEEe
Confidence            34789999999999999764 688999999864333221100   00011111112335789999999999999999999


Q ss_pred             cCC-C-CeeEEEEeceecc
Q psy14080         93 QPY-T-TTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~-~-~~s~~~~L~V~g~  109 (113)
                      +.. + ..+..+.|.|.|.
T Consensus        99 n~~~g~ieSHs~ti~V~~~  117 (122)
T 1xau_A           99 NFNSQVINSHSVTIHVRER  117 (122)
T ss_dssp             EETTEEEECCCEEEEEC--
T ss_pred             eCCCCceeeeEEEEEEEee
Confidence            653 2 4466677888764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.28  E-value=3.7e-11  Score=92.11  Aligned_cols=96  Identities=13%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEE----EEEec-CCC--eEEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRV----SWVRR-RDW--HILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V----~W~k~-~~~--~~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ...+.+.+|+++.|.|.+.+.+.+.+    .|+|. ++.  .+...+ ......++|+.+..+..++.++|.|.+++.+|
T Consensus       338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D  417 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD  417 (585)
T ss_pred             CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence            45678899999999999998887776    79873 222  232211 11123467888864334566789999999999


Q ss_pred             CEEEEEeecCCCCeeEEEEeceec
Q psy14080         85 NGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|.|.|.++..+..+..+.|.|..
T Consensus       418 ~G~Y~C~an~~g~~~~~~~l~V~~  441 (585)
T 2ocw_A          418 AGFYWCLTNGDTLWRTTVEIKIIE  441 (585)
T ss_pred             CEEEEEcccCCCccceeEEEEEec
Confidence            999999996667777788888864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=2.1e-11  Score=88.85  Aligned_cols=83  Identities=16%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC-----CCCcEEEEEccCCCCCCEEEEEe
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-----GSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .+.+|++++|.|.+.+.+.+.|.|+|.  +..+.       ...+.......     .....+|.|.+++.+|+|.|+|.
T Consensus       257 ~~~~g~~v~l~C~~~g~P~p~i~W~~~--g~~l~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~  327 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPAPSLRWLFN--GSVLN-------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL  327 (347)
T ss_dssp             CCEESSSEEEEEEEEEESCCEEEEEET--TEECC-------CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCccCceEEEEEEeeecCCCcEEEEeC--CEECC-------CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEE
Confidence            356799999999999999999999974  33332       12222221101     12366899999999999999999


Q ss_pred             e-cCCCCeeEEEEeceec
Q psy14080         92 A-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g  108 (113)
                      + +..+..+..+.|.|.+
T Consensus       328 a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          328 AANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEETTEEEEEEEEECSCC
T ss_pred             EecCCCceeeEEEEEecC
Confidence            9 5667888999999875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.27  E-value=9.3e-12  Score=84.19  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+. .....+++.+|+++.|.|.+.+.+.+.|.|+|.  +..+....   ....|+..  ..+...+.|.|.+++.+|
T Consensus         9 ~P~i~-~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~--g~~~~~~~---~~~~~~~~--~~~~~~~~l~i~~v~~~d   80 (217)
T 2vr9_A            9 SPRII-EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD--GEPVSTNE---KKSHRVQF--KDGALFFYRTMQGKKEQD   80 (217)
T ss_dssp             CCEEE-ECCCCEEECTTSCEEECCEEECSSCCEEEEEET--TEECCCSS---SSSSEEEC--TTSCEEESSCCBSSSCBC
T ss_pred             CCEEe-cCCCceEEeCCCcEEEEEEcCCCCCCeEEEEEC--CcCccCCC---ccceeEEe--cCCceEEEEEeccCCccc
Confidence            44444 445678999999999999999888889999984  22222110   01122221  112222345899999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|.|+|.+..
T Consensus        81 ~G~Y~C~~~n   90 (217)
T 2vr9_A           81 GGEYWCVAKN   90 (217)
T ss_dssp             CEEEEEEEEE
T ss_pred             CceEEEEEec
Confidence            9999999954

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.27  E-value=5.4e-13  Score=80.50  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccC-CCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFL-QKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~   91 (113)
                      ++...+..|++|+|.|.+.+.|  .|.|+|.  +..|.        ..          .+.+|.|.++ +.+|+|.|.|.
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P--~i~W~kd--g~~l~--------~~----------~~~~L~I~~v~~~~DsG~Y~C~   63 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDE--NLKWEKN--GQELP--------QK----------HDKHLVLQDFSEVEDSGYYVCY   63 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCS--SCEEEET--TEECT--------TC----------CSSCCBCCSCCTTTTCSCEEEE
T ss_pred             CceeEEEcCCeEEEEEECCCCC--cEEEEEC--CEECc--------CC----------CCCEEEECccCccCcCEEEEEE
Confidence            3445677899999999999876  3999983  33221        11          2348999996 88999999999


Q ss_pred             ecCCCCeeEEEEeceec
Q psy14080         92 AQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        92 ~~~~~~~s~~~~L~V~g  108 (113)
                      +.+ ...+  ++|-|++
T Consensus        64 A~t-~~~~--~~lylka   77 (82)
T 3r08_E           64 TPA-SNKN--TYLYLKA   77 (82)
T ss_dssp             CSS-CTTC--CCCCCTT
T ss_pred             Ecc-CCcc--EEEEEEE
Confidence            976 2223  3454544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.27  E-value=4.2e-12  Score=90.97  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecC--CCeEEEecceEEcCCCCEEEEEe-----CCCCcEEEEEccCCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRR--DWHILTSGVLTYTNDARFQVIHT-----DGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~--~~~~l~~~~~~~~~~~R~~~~~~-----~~~~~~~L~I~~v~~~D   84 (113)
                      ...+.++.+|+++.|.|.+.+.+.+.+.|+|..  ++..+..+     ...++.+...     .+....+|.|.+++.+|
T Consensus       228 ~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  302 (334)
T 1ry7_B          228 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD-----GTPYVTVLKTAGANTTDKELEVLSLHNVTFED  302 (334)
T ss_dssp             CSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTT-----SSBCCCCCCCSSCSCSCTTCCCEEECSCCTTS
T ss_pred             CCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCC-----CCeeEEEeecCccccccccccEEEEccCCHHH
Confidence            346678999999999999998888899999952  11111111     0111222110     01223489999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|.|+|.+ +..+..+..+.|.|...
T Consensus       303 ~G~Y~C~a~N~~G~~~~~~~l~V~~~  328 (334)
T 1ry7_B          303 AGEYTCLAGNSIGFSHHSAWLVVLPA  328 (334)
T ss_dssp             CSEEEEEEEESSCCEEEEEEEEEECS
T ss_pred             CEEEEEEEeCCCCeEEEEEEEEEEEC
Confidence            99999999 56688888999999764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.26  E-value=4.4e-11  Score=81.09  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=57.3

Q ss_pred             eEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         15 ISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      ...+.+|++++|.|.+ .+.+.+.|.|+|.++ ..+.       .+.+.......+.....|.|.+++.+|+|.|+|.+ 
T Consensus       119 ~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~-~~~~-------~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  190 (222)
T 4i0k_A          119 NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQG-VPLT-------GNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVR  190 (222)
T ss_dssp             -----CCSEEEEEEEEEEEBSCCEEEEECTTS-CBCC-------SEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEE
T ss_pred             CceecCCceEEEEEecccccCCCeEEEEcCCC-ccCC-------CCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEE
Confidence            3467889999999999 777888999987432 2211       01111111112222235899999999999999999 


Q ss_pred             cCCCCeeEEEEeceecccc
Q psy14080         93 QPYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g~~~  111 (113)
                      +..+..+..+.|.|.+.-.
T Consensus       191 n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          191 NPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             ETTTTEEEEEEEECCC---
T ss_pred             CCCCCCceEEEEEEeCCcc
Confidence            4667888889999987643

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.26  E-value=4.3e-11  Score=93.77  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+..+.+|+++.|.|.+.+.+.+.|.|||..  ..|       ....||.+..  +++..+|.|.++..+|+|.|+|.+
T Consensus       489 ~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~--~el-------~~s~~~~i~~--~~~~~~L~I~~~~~~D~G~Yt~~A  557 (573)
T 3uto_A          489 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDD--REL-------KQSVKYMKRY--NGNDYGLTINRVKGDDKGEYTVRA  557 (573)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSCCEEEEEETT--EEC-------CSSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCcEEeCCCcEEEEEEEEccCCCeEEEEECC--EEc-------ccCCcEEEEE--cCCEEEEEEcCCCcccCcEEEEEE
Confidence            35578899999999999999999999999842  222       3467888864  356789999999999999999999


Q ss_pred             -cCCCCeeEEEEecee
Q psy14080         93 -QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~  107 (113)
                       |..+..+..+.|+|.
T Consensus       558 ~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          558 KNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEEEEC
Confidence             677899999999883

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.26  E-value=9.5e-12  Score=84.80  Aligned_cols=84  Identities=12%  Similarity=-0.066  Sum_probs=58.0

Q ss_pred             ecceEEEecC--CcEEEEEEEccCCCCEEEEEecC-CCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         12 FGQISTGFLA--VFSYSDKTVRDIVKVRVSWVRRR-DWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        12 ~~~~~tv~~G--~~a~L~C~v~~~~~~~V~W~k~~-~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ....+++.+|  ++|+|+|.+.+ +.+.|.|+|.. ++.++.       .+.++...     ....|.|.+++.+|+|.|
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~-------~~~~~~~~-----~~~~l~I~~v~~~D~G~Y   79 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVP-------DGNRISWD-----SKKGFTIPSYMISYAGMV   79 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECC-------CSSSCEEE-----TTTEEEEEGGGTTTCSEE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCcccc-------CCCccccc-----CCccEEEccCChhcCceE
Confidence            3467899999  99999999986 56899999862 233332       23345443     234799999999999999


Q ss_pred             EEeecCCC--CeeEEEEeceec
Q psy14080         89 ECQAQPYT--TTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~~~~~--~~s~~~~L~V~g  108 (113)
                      +|.+....  ..+..+.|.|.+
T Consensus        80 ~C~a~n~~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           80 FCEAKINDESYQSIMYIVVVVG  101 (213)
T ss_dssp             EEEEC----CEECCCEEEEECB
T ss_pred             EEEEEECCeeEEEEEEEEEEeC
Confidence            99995432  233346676654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.26  E-value=3e-11  Score=88.16  Aligned_cols=85  Identities=12%  Similarity=-0.027  Sum_probs=63.7

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+..+.+|+++.|.|.+.+.+.+.+.|+|.  +..+..+    ....++...      +.+|.|.+++.+|+|.|+|.
T Consensus       318 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~--g~~~~~~----~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~  385 (404)
T 3p3y_A          318 EPKNLILAPGEDGRLVCRANGNPKPTVQWMVN--GEPLQSA----PPNPNREVA------GDTIIFRDTQISSRAVYQCN  385 (404)
T ss_dssp             CCCCEEECTTCCEEEECEEEEESCCEEEEEET--TEEGGGS----CCCTTEEEE------TTEEEESSCCSSCCCEEEEE
T ss_pred             cCCcceeecCCcEEEEEEccccCCCceEEEEC--CEecCCC----CCCceEEec------CCEEEEeecCHHHCEEEEEE
Confidence            44567889999999999999988899999984  3332211    012344332      33899999999999999999


Q ss_pred             e-cCCCCeeEEEEeceec
Q psy14080         92 A-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g  108 (113)
                      + +..+..+..+.|.|++
T Consensus       386 a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          386 TSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEETTEEEEEEEEEEEC-
T ss_pred             EEeCCCcEEEEEEEEEEe
Confidence            9 5667888889998875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.26  E-value=8.8e-12  Score=90.76  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceE-----EcCCCCEEEEEeC-CCCcEEEEEccCCCCCCEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLT-----YTNDARFQVIHTD-GSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~-----~~~~~R~~~~~~~-~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      .+++.+|++++|+|.+.+.+.+.|.|||.+...++......     ....+|+.+..+. ..+.++|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            47889999999999999888889999996532222111000     0124577654100 23567899999999999999


Q ss_pred             EEeecCCCCeeEEEEeceec
Q psy14080         89 ECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|.+...   +..+.|.|.+
T Consensus        83 ~C~~~n~---~~~~~l~V~~   99 (363)
T 1wio_A           83 ICEVEDQ---KEEVQLLVFG   99 (363)
T ss_dssp             EEEETTE---EEEEEEEEEE
T ss_pred             EEEEEEC---CCcEEEEEEe
Confidence            9999653   2356777764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.26  E-value=4.2e-11  Score=81.69  Aligned_cols=80  Identities=14%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++..+.++++.+|+++.|.|.+.+.+.+.+.|||.+  ..+                  ...+..+|.|.+++.+|+|.|
T Consensus        21 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~--~~~------------------~~~~~~~L~i~~v~~~d~G~Y   80 (218)
T 3k0w_A           21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN--KEI------------------PNGNTSELIFNAVHVKDAGFY   80 (218)
T ss_dssp             EEECCCCEEEETTSBEEEECEETTTTSSEEEEEETT--EEC------------------TTCCSSEEEETTCCGGGCEEE
T ss_pred             EEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECC--EEC------------------CCCCCCEEEEccCChhhCeEe
Confidence            344566789999999999999998888899999843  111                  112356899999999999999


Q ss_pred             EEeecCC-C-CeeEEEEeceec
Q psy14080         89 ECQAQPY-T-TTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~~~~-~-~~s~~~~L~V~g  108 (113)
                      +|.+... + ..+..+.|.|..
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~  102 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCD  102 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEEC
T ss_pred             EEEEEcCCCCceeeEEEEEEEc
Confidence            9999643 3 225556776654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.26  E-value=3.7e-11  Score=81.98  Aligned_cols=80  Identities=10%  Similarity=-0.009  Sum_probs=60.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ........+.+|+++.|.|.+.+.+.+.+.|+|..  ..+.                  .....+|.|.+++.+|+|.|+
T Consensus       122 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~--~~~~------------------~~~~~~L~i~~v~~~d~G~Y~  181 (218)
T 3k0w_A          122 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE--LPLT------------------HETKKLYMVPYVDLEHQGTYW  181 (218)
T ss_dssp             EECCCCEEECTTCCEEEECEEEBSSCCEEEEEETT--EECT------------------TCCSSEEEESSCCGGGCEEEE
T ss_pred             EECCCceeecCCCcEEEEEEecccCCCeEEEEECC--EECC------------------CCCCCEEEEeecChhcCEEEE
Confidence            34455678999999999999998888999999842  2211                  112458999999999999999


Q ss_pred             EeecC-CCC-eeEEEEeceecc
Q psy14080         90 CQAQP-YTT-TSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~~~-~~~-~s~~~~L~V~g~  109 (113)
                      |.+.. .+. .+..+.|.|.+.
T Consensus       182 C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          182 CHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             EEEECSSCEEECCCEEEEECC-
T ss_pred             EEEEcCCCCceeeeEEEEEeCC
Confidence            99954 443 567788888763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.25  E-value=5.6e-11  Score=79.60  Aligned_cols=91  Identities=10%  Similarity=-0.053  Sum_probs=61.2

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+..++..+.. .+.+|++++|.|.+.+. ...+.|||..  ..+...      ..+..    ....+.+|.|.+++.+
T Consensus         2 l~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g--~~~~~~------~~~~~----~~~~~~~L~I~~v~~~   67 (188)
T 1oll_A            2 LPKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEG--SLFAVD------RPKPP----ERINKVKFYIPDMNSR   67 (188)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETT--EEEEEE------CCSSC----TTCCEEEEEESSCCGG
T ss_pred             CCCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECC--Cccccc------ccccC----CCcceeEEEeCcCCcc
Confidence            455566655555 89999999999998753 4688999843  222110      11110    1235679999999999


Q ss_pred             CCEEEEEeecCC---CCeeEEEEeceec
Q psy14080         84 DNGTYECQAQPY---TTTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~---~~~s~~~~L~V~g  108 (113)
                      |+|.|.|.+...   ...+..+.|.|.+
T Consensus        68 D~G~Y~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           68 MAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             GCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             cCeEEEEEecCCCCCCCCCCceEEEecc
Confidence            999999999542   1335567777765

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.25  E-value=1.2e-11  Score=89.25  Aligned_cols=88  Identities=10%  Similarity=-0.014  Sum_probs=61.9

Q ss_pred             cceEEEecCCcEEEEEEEccCC-----------CCEEEEEecCCCe--EEEecceEEcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV-----------KVRVSWVRRRDWH--ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~-----------~~~V~W~k~~~~~--~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .+++++.+|++++|.|.+.+.+           .+.|.|||.....  .....  ....+.|+...      ..+|.|.+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~--~~~~~~~~~~~------~~~L~i~~   85 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN--FRLPENRISKE------KDVLWFRP   85 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECC--CCCGGGCEEEE------TTEEEESS
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccc--ccccCceEeec------CCEEEEcc
Confidence            4568899999999999998654           4899999965211  11100  00123455443      34899999


Q ss_pred             CCCCCCEEEEEeecC-CCCeeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQP-YTTTSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~-~~~~s~~~~L~V~g  108 (113)
                      ++.+|+|.|.|.+.. ....+..+.|.|..
T Consensus        86 ~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~  115 (349)
T 4dep_C           86 TLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ  115 (349)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CChhhCEEEEEEEecCCceEEEEEEEEEec
Confidence            999999999999954 45566678888875

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.25  E-value=6.2e-12  Score=90.41  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEc-------cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVR-------DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~-------~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ....+...+++.+.+|+++.|.|.+.       +.+.+.|.|+|......+..     ..+.|+...      +.+|.|.
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~-----~~~~~~~~~------~~~L~i~   86 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG-----EEETRMWAQ------DGALWLL   86 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSC-----CSSSCEEEE------TTEEEES
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCc-----cccccEEee------CCeEEEC
Confidence            33445566788999999999999998       77788999998542211210     114466543      4489999


Q ss_pred             cCCCCCCEEEEEeec-CCCCeeEEEEeceecc
Q psy14080         79 FLQKRDNGTYECQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      +++.+|+|.|.|.+. ..+..+..+.|.|...
T Consensus        87 ~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           87 PALQEDSGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             SBCTTCCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             CCCcccCEEEEEEEECCcceEEEEEEEEEEcC
Confidence            999999999999995 4456677788888754

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.25  E-value=7.2e-11  Score=83.39  Aligned_cols=85  Identities=12%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEcc-CCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF-LQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~~   92 (113)
                      ..+.+.+|+++.|.|.+.+.+.+.|.|+|..  ..+       ..+.|+.+..  .....+|.|.+ ++.+|+|.|.|.+
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------~~~~~~~~~~--~~~~~~l~i~~~~~~~d~G~Y~C~a  180 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQ--DLI-------DNNGHYQVIV--TRSFTSLVFPNGVERKDAGFYVVCA  180 (305)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEESS--SBC-------CSSSSCEEEE--CSSEEEEEETTCCCSTTCEEEEEEE
T ss_pred             ccEEecCCCEEEEEEEECCCCCCEEEEEECC--EEC-------CCCCcEEEEE--cCCceEEEEecCCccCccEEEEEEE
Confidence            3567889999999999999988999999843  222       2456777653  33567999999 9999999999999


Q ss_pred             -cCCCCeeEEEEeceecc
Q psy14080         93 -QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g~  109 (113)
                       +..+..+..+.|.|.+.
T Consensus       181 ~N~~G~~~~~~~l~v~~~  198 (305)
T 2nzi_A          181 KNRFGIDQKTVELDVADV  198 (305)
T ss_dssp             EETTEEEEEEEEEEEEBC
T ss_pred             EeCCCceeeEEEEEEecC
Confidence             45567777888888753

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.24  E-value=2e-11  Score=87.23  Aligned_cols=89  Identities=12%  Similarity=-0.001  Sum_probs=64.5

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEc-cCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK-FLQK   82 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~-~v~~   82 (113)
                      |+.+.........+.+|+++.|.|.+.+.+.+. +.|+|.+.. +          .......      +.+|.|. +++.
T Consensus       231 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~-~----------~~~~~~~------~~~L~i~~~v~~  293 (331)
T 3u83_A          231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS-L----------PKGVEAQ------NRTLFFKGPINY  293 (331)
T ss_dssp             EEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBS-C----------CTTEEEE------TTEEEECSCCCG
T ss_pred             CCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCc-c----------cccceec------CcEEEEeCCCcc
Confidence            344443334445678899999999999888887 999985421 1          1122222      3489999 9999


Q ss_pred             CCCEEEEEee-cCCCCeeEEEEeceeccc
Q psy14080         83 RDNGTYECQA-QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        83 ~D~G~Y~C~~-~~~~~~s~~~~L~V~g~~  110 (113)
                      +|+|.|.|.+ +..+..+..+.|.|++..
T Consensus       294 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          294 SLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             ccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            9999999999 566778899999998753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.24  E-value=3.6e-11  Score=80.61  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             EecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-CC
Q psy14080         18 GFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-YT   96 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~   96 (113)
                      +.+|+++.|.|.+.+.+ +.+.|+|.  +..+       ..+.|+.+..    .+.+|.|.+++.+|+|.|+|.+.. .+
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~--g~~l-------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g  187 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFN--SQSL-------QLTERMTLSQ----NNSILRIDPIKREDAGEYQCEISNPVS  187 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEET--TEEC-------CCCSSEEEET----TTTEEEESSCCGGGCEEEEEEEECTTC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEEC--CEeC-------CCCCCeEEcC----CCCEEEEeccCHHhCeEEEEEEecCCC
Confidence            78899999999999865 79999983  3332       2456777652    346899999999999999999953 34


Q ss_pred             -CeeEEEEeceeccc
Q psy14080         97 -TTSHSQNAPGLGDL  110 (113)
Q Consensus        97 -~~s~~~~L~V~g~~  110 (113)
                       ..+..++|.|...-
T Consensus       188 ~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          188 VRRSNSIKLDIIFDP  202 (208)
T ss_dssp             CEECCCEEECCC---
T ss_pred             cccCCceeeeEEeCC
Confidence             45788888887643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.24  E-value=3.5e-11  Score=80.60  Aligned_cols=78  Identities=9%  Similarity=-0.035  Sum_probs=56.3

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ...+.+|++++|.|...+. .+.+.|+|.......           +..    ......+|.|.+++.+|+|.|+|.+..
T Consensus       107 ~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~-----------~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~n  170 (188)
T 1oll_A          107 GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-----------QRG----YGKVQAEFPLGPVTTAHRGTYRCFGSY  170 (188)
T ss_dssp             CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE-----------EEE----ECSSEEEEEEEECCGGGCEEEEEECEE
T ss_pred             CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc-----------ccc----CCCceeEEEECCCCcCCCcEEEEEEEc
Confidence            3468899999999998754 468999985422111           001    112467999999999999999999953


Q ss_pred             C----CCeeEEEEeceec
Q psy14080         95 Y----TTTSHSQNAPGLG  108 (113)
Q Consensus        95 ~----~~~s~~~~L~V~g  108 (113)
                      .    ...|..+.|.|.|
T Consensus       171 ~~~~~s~~S~~~~l~V~g  188 (188)
T 1oll_A          171 NNHAWSFPSEPVKLLVTG  188 (188)
T ss_dssp             ETTEECCCCCCEEEEEEC
T ss_pred             CCCcCCCCCCcEEEEecC
Confidence            2    3457788888876

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.23  E-value=1.1e-10  Score=78.73  Aligned_cols=92  Identities=15%  Similarity=0.007  Sum_probs=59.9

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..+...+. ..+.+|++++|.|.+.. +.+.+.|||.... +....     ...++.    .......|.|.+++.+|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~-~~~~~-----~~~~~~----~~~~~~~l~I~~v~~~D   74 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMF-NDTLR-----LIGEHH----DGVSKANFSISRMTQDL   74 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSS-CEEEE-----EECEEE----TTEEEEEEEESSCCGGG
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCc-CCcce-----eeeecC----CCCceEEEEeccCCccc
Confidence            3444444443 67899999999999974 5678999996432 11100     011111    12246799999999999


Q ss_pred             CEEEEEeecCC------CCeeEEEEeceec
Q psy14080         85 NGTYECQAQPY------TTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~------~~~s~~~~L~V~g  108 (113)
                      +|.|+|.+...      ...+..+.|.|.+
T Consensus        75 ~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~  104 (201)
T 1nkr_A           75 AGTYRCYGSVTHSPYQVSAPSDPLDIVIIG  104 (201)
T ss_dssp             CEEEEEEEEBTTBTTCCCCCCCCEEEEEEC
T ss_pred             CeEEEEeEecCCCCccccCCCCCEEEEeec
Confidence            99999999421      1335566777765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.22  E-value=7e-11  Score=88.93  Aligned_cols=82  Identities=12%  Similarity=0.030  Sum_probs=58.7

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+.|.+|+++.|.|.+.+.+.+.+.|++.+ .. +.       ...++..   ......+|.|.+++.+|+|.|+|.+.
T Consensus        56 ~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~-~~-l~-------~~~~~~~---~~~~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           56 AAVEVDVSASITLQVLVDAPGNISCLWVFKH-SS-LN-------CQPHFDL---QNRGVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             CEEEECSSCCEEEEEECSCCSSCEEEEEETT-EE-EC-------CCCBC--------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             ccEEEecCCcEEEEEEEEcCCCCeEEEEECC-Cc-cC-------ccceecc---ccceEEEEEEeecCcccCEEEEEEEE
Confidence            3788999999999999999888999999853 11 11       1112211   11234589999999999999999995


Q ss_pred             -CCCCeeEEEEecee
Q psy14080         94 -PYTTTSHSQNAPGL  107 (113)
Q Consensus        94 -~~~~~s~~~~L~V~  107 (113)
                       ..+..+..+.|.|.
T Consensus       124 N~~g~~~~~~~l~V~  138 (423)
T 3qs7_E          124 SEATNYTILFTVSIR  138 (423)
T ss_dssp             C--CEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEEEEe
Confidence             44666777888776

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.21  E-value=1.6e-11  Score=81.12  Aligned_cols=81  Identities=15%  Similarity=0.143  Sum_probs=56.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+..++.....+.+.+|++++|.|.+.+.+.+ .+.|||..  ..+                   ..+..+|.|.+++.+
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~--~~~-------------------~~~~~~L~i~~v~~~   61 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG--SLS-------------------EETNSSLNIVNAKFE   61 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETT--EEC-------------------SCCSSEEEECSCCGG
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECC--eEC-------------------CCCceEEEEecccee
Confidence            44555566666889999999999999887654 68999843  111                   013569999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEecee
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      |+|.|.|.+.. ...+..+.|.|.
T Consensus        62 d~G~Y~C~~~~-~~~s~~~~l~V~   84 (176)
T 1f2q_A           62 DSGEYKCQHQQ-VNESEPVYLEVF   84 (176)
T ss_dssp             GCEEEEEECTT-SSCCCCEEEEEE
T ss_pred             cCEEEEEEcCC-ccccccEEEEEe
Confidence            99999999954 223444566664

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.21  E-value=1.3e-10  Score=84.58  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ....++.+|+++.|.|.+.+.+.+.|.|+|.  +..+.                   ..+.+|.|.+++.+|+|.|+|.+
T Consensus       314 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~i~-------------------~~~~~L~i~~v~~~d~G~Y~C~a  372 (388)
T 2v5m_A          314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD--GKAIG-------------------HSESVLRIESVKKEDKGMYQCFV  372 (388)
T ss_dssp             SSEEEECTTSCEEEEEEEEEECCCEEEEEET--TEECS-------------------CCSSEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEecCCCCEEEEEEeccccCCeEEEEEC--CEECc-------------------cCCCEEEEecCChhhCEEEEEEE
Confidence            4567889999999999999988899999983  22221                   12348999999999999999999


Q ss_pred             -cCCCCeeEEEEece
Q psy14080         93 -QPYTTTSHSQNAPG  106 (113)
Q Consensus        93 -~~~~~~s~~~~L~V  106 (113)
                       +..+..+..+.|.|
T Consensus       373 ~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          373 RNDRESAEASAELKL  387 (388)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEEe
Confidence             45677888888876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.20  E-value=2.5e-11  Score=83.78  Aligned_cols=90  Identities=12%  Similarity=-0.000  Sum_probs=58.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcE--EEEEccCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW--NLQIKFLQK   82 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~--~L~I~~v~~   82 (113)
                      |+..+...+. ..+.+|++++|.|.+.+ +.+.+.|||........        ..++.    ...+..  +|.|.+++.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~--------~~~~~----~~~~~~~~~L~I~~v~~   73 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE--------IGRRL----KFWNETDPEFVIDHMDA   73 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEE--------CSEEC----C----CCCEEEECSCCG
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccc--------ccccC----CCCcceeeEEEEccccc
Confidence            4444444444 47899999999999986 56789999964322110        11111    111244  899999999


Q ss_pred             CCCEEEEEeecCCC---CeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYT---TTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~---~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+....   ..+..+.|.|.+
T Consensus        74 ~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           74 NKAGRYQCQYRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             GGCEEEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             ccCEEEEEEEEcCCCceeecCCEEEEEcC
Confidence            99999999996432   234557777765

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.20  E-value=6.2e-11  Score=86.22  Aligned_cols=92  Identities=9%  Similarity=-0.050  Sum_probs=63.9

Q ss_pred             ceEEEecCCcEEEEEEEcc-----CCCCEEEEEecCCCeEEEecceEE-cCCCCEEEEEe--------CCCCcEEEEEcc
Q psy14080         14 QISTGFLAVFSYSDKTVRD-----IVKVRVSWVRRRDWHILTSGVLTY-TNDARFQVIHT--------DGSDDWNLQIKF   79 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-----~~~~~V~W~k~~~~~~l~~~~~~~-~~~~R~~~~~~--------~~~~~~~L~I~~   79 (113)
                      ..+.+.+|+++.|.|.+.+     .+.+.|.|+|....  +......+ ..+.++.+...        ...+..+|.|.+
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  261 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS--SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ  261 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC--CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESS
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC--ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEcc
Confidence            5567889999999999877     55678999985421  10000001 12456655321        123466999999


Q ss_pred             CCCCCCEEEEEeec-C--CCCeeEEEEecee
Q psy14080         80 LQKRDNGTYECQAQ-P--YTTTSHSQNAPGL  107 (113)
Q Consensus        80 v~~~D~G~Y~C~~~-~--~~~~s~~~~L~V~  107 (113)
                      ++.+|+|.|.|.+. .  .+..+..+.|.|.
T Consensus       262 v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          262 ALPQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             BCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             CCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            99999999999994 5  5778888888886

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.20  E-value=3.7e-10  Score=75.18  Aligned_cols=93  Identities=6%  Similarity=-0.062  Sum_probs=61.4

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ..........+..|+++.|.|.+.+.+.+.|.|+|.... +.. .. ....+..+..       ..+|.|.+++.+|+|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~-~~~-~~-~~~~~~~~~~-------~s~L~i~~~~~~d~g~  189 (218)
T 4frw_A          120 PSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG-TTS-SR-SFKHSRSAAV-------TSEFHLVPSRSMNGQP  189 (218)
T ss_dssp             CEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC-EEE-EE-EEECSSSEEE-------EEEEEECCCGGGTTCE
T ss_pred             ceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc-ccc-Cc-eEecCCcEEE-------EEEEEEeeCCHHhCeE
Confidence            333444556677899999999999999999999986432 211 11 1111222221       3489999999999999


Q ss_pred             EEEeecC-CCC--eeEEEEeceeccc
Q psy14080         88 YECQAQP-YTT--TSHSQNAPGLGDL  110 (113)
Q Consensus        88 Y~C~~~~-~~~--~s~~~~L~V~g~~  110 (113)
                      |+|.+.. .+.  .+.++.|.|-...
T Consensus       190 YtC~a~N~~g~~~~~~t~~v~V~~~~  215 (218)
T 4frw_A          190 LTCVVSHPGLLQDQRITHILHVSHHH  215 (218)
T ss_dssp             EEEEEECTTCSSCEEEEEECCEECCC
T ss_pred             EEEEEEeCCCCeEEEEEEEEEECcCc
Confidence            9999953 343  3455566665443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.20  E-value=3.8e-11  Score=87.44  Aligned_cols=87  Identities=13%  Similarity=0.024  Sum_probs=63.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ....+.+|+++.|.|.+.+.+.+.|.|+|........   .....+.|+...      ..+|.|.+++.+|+|.|.|.+.
T Consensus       220 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~  290 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRK---QAVVLNDRVKQV------SGTLIIKDAVVEDSGKYLCVVN  290 (388)
T ss_dssp             CCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCE---EECCCSSSEEEE------TTEEEESSCCGGGCEEEEEEEE
T ss_pred             CceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccc---ccccccCceecc------cCEEEECcCCHHHCeEEEEEEe
Confidence            4457889999999999998888899999964221100   011234566543      3489999999999999999994


Q ss_pred             -CCCCeeEEEEeceecc
Q psy14080         94 -PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        94 -~~~~~s~~~~L~V~g~  109 (113)
                       ..+..+..+.|.|...
T Consensus       291 n~~g~~~~~~~l~V~~~  307 (388)
T 2v5m_A          291 NSVGGESVETVLTVTAP  307 (388)
T ss_dssp             CSSCEEEEEEEEEEEEE
T ss_pred             cCCCceeEEEEEEEeCC
Confidence             5566777888888653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.20  E-value=5.7e-11  Score=77.57  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .|..++...+..+.+.+|+++.|.|.+.+.+ ...+.|||..  ..+.       .            +...|.|.+++.
T Consensus         2 ~p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g--~~~~-------~------------~~~~~~~~~~~~   60 (170)
T 3ry4_A            2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNG--NLIP-------T------------HTQPSYRFKANN   60 (170)
T ss_dssp             CCBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETT--EECT-------T------------CCSSEEEEECCG
T ss_pred             CCCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECC--eEcc-------c------------CccceEEEeccc
Confidence            5777777777778899999999999998875 5689999832  2211       0            122466789999


Q ss_pred             CCCEEEEEeecCCCCeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      +|+|.|.|.+.. ...+..+.|.|..
T Consensus        61 ~d~G~Y~C~~~~-~~~s~~~~l~v~~   85 (170)
T 3ry4_A           61 NDSGEYTCQTGQ-TSLSDPVHLTVLF   85 (170)
T ss_dssp             GGCEEEEEEETT-SBCCCCEEEEEEC
T ss_pred             ccCeEEEEEEeC-CCceEeEEEEEEC
Confidence            999999999964 3334456666654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.19  E-value=2e-11  Score=89.08  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=67.3

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEc----c
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIK----F   79 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~----~   79 (113)
                      .|+.+.......+.+.+|++++|.|.+.+.+.+.|.|+|.  +..+..     ..+.|+....    .+.+|.|.    +
T Consensus        15 ~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l~~-----~~~~~~~~~~----~~~~l~i~~~~~~   83 (404)
T 3p3y_A           15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRN--SRFFNI-----AKDPRVSMRR----RSGTLVIDFRSGG   83 (404)
T ss_dssp             CCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEET--TEECCG-----GGCSSCBCCS----SSCCCBCCCTTTC
T ss_pred             CCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEEC--CEEeee-----ecCCcceEec----CCceEEEEeccCC
Confidence            4666666667778999999999999999888899999984  333221     1245555432    23455554    8


Q ss_pred             CCCCCCEEEEEeecC-CCCe-eEEEEeceecc
Q psy14080         80 LQKRDNGTYECQAQP-YTTT-SHSQNAPGLGD  109 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~-~~~~-s~~~~L~V~g~  109 (113)
                      ++.+|+|.|.|.+.. .+.. +..+.|.|...
T Consensus        84 ~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~  115 (404)
T 3p3y_A           84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKS  115 (404)
T ss_dssp             CTTSSCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             CCccCCEEEEEEEEcCCCeEeeeeEEEEEecc
Confidence            999999999999954 3433 56778887653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.19  E-value=3.8e-11  Score=80.60  Aligned_cols=81  Identities=11%  Similarity=-0.041  Sum_probs=54.4

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-C
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-Y   95 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~   95 (113)
                      .+.+|++++|.|.+.+. ...+.|+|....  +...      ..+....  ......+|.|.+++.+|+|.|+|.+.. .
T Consensus       110 ~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~--~~~~------~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  178 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSP-MDTFLLCKERAA--HPLL------CLRSEHG--AQQHQAEFPMSPVTSVHGGTYRCFSSHGF  178 (196)
T ss_dssp             EECTTCCEEEEEEEEEE-EEEEEEEETTCC--CGGG------SEEEEEE--EEEEEEEEEECSCCGGGCEEEEEEEECGG
T ss_pred             eecCCCeEEEEEecCCC-CCEEEEEeCCCc--ccce------eeccccc--ccCcceEEEeCCCcccCCCeEEEEEEcCC
Confidence            67899999999999874 458999985421  1100      0011111  011356899999999999999999953 2


Q ss_pred             -----CCeeEEEEeceec
Q psy14080         96 -----TTTSHSQNAPGLG  108 (113)
Q Consensus        96 -----~~~s~~~~L~V~g  108 (113)
                           ...+..+.|.|.|
T Consensus       179 ~~~~~s~~S~~~~l~V~G  196 (196)
T 3p2t_A          179 SHYLLSHPSDPLELIVSG  196 (196)
T ss_dssp             GTTEECCCCCCEEEEEC-
T ss_pred             CCcccCCCCCCEEEEeCC
Confidence                 2456778888876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.19  E-value=3.5e-11  Score=83.05  Aligned_cols=81  Identities=12%  Similarity=0.009  Sum_probs=57.0

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ...+.+|++++|.|...+.+.+.+.|+|.... + .        ..+ . .   .....+|.|.+++.+|+|.|+|.+..
T Consensus       114 ~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~-~-~--------~~~-~-~---~~~~~~L~I~~v~~~D~G~Y~C~a~n  178 (218)
T 1uct_A          114 GLVLMPGENISLTCSSAHIPFDRFSLAKEGEL-S-L--------PQH-Q-S---GEHPANFSLGPVDLNVSGIYRCYGWY  178 (218)
T ss_dssp             CSEECTTCCCEEEEECSSSCCSEEEEEETTCS-S-C--------CSE-E-E---CSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCccCCCCCEEEEEeCCCCCCCEEEEEECCCc-c-c--------ccc-c-C---CCccCEEEEccCCcccCEEEEEEEEc
Confidence            34788999999999777667788999985321 1 0        111 1 1   12467999999999999999999953


Q ss_pred             C------CCeeEEEEeceeccc
Q psy14080         95 Y------TTTSHSQNAPGLGDL  110 (113)
Q Consensus        95 ~------~~~s~~~~L~V~g~~  110 (113)
                      .      ...|..+.|.|.|..
T Consensus       179 ~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          179 NRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             TTSTTEECCCCCCEEEEEC---
T ss_pred             CCCCCcCCCCCCcEEEEEecCC
Confidence            2      245678899998854

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.18  E-value=1.4e-10  Score=84.73  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ....+.+.+|+++.|.|.+.+.+.+.+.|+|..  ..+.      ....++...     ++.+|.|.+++.+|+|.|+|.
T Consensus       227 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~~------~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~  293 (403)
T 3laf_A          227 RPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE--EVIQ------LRSKKYSLL-----GGSNLLISNVTDDDSGTYTCV  293 (403)
T ss_dssp             CCCCEEEETTSCEEECCEEEEESCCEEEEEETT--EECC------CSSSSEEEE-----TTTEEEECSCCGGGCEEEEEE
T ss_pred             CCCceEecCCCcEEEEEEcCCCCCCeEEEEECC--eecc------CCCceEEEC-----CccEEEEeCCCHHHCEEEEEE
Confidence            445678889999999999999888899999843  2221      124566554     345899999999999999999


Q ss_pred             ec-CCCCeeEEEEeceec
Q psy14080         92 AQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V~g  108 (113)
                      +. ..+..+..+.|.|..
T Consensus       294 a~n~~g~~~~~~~l~V~~  311 (403)
T 3laf_A          294 VTYKNENISASAELTVLV  311 (403)
T ss_dssp             EEETTEEEEEEEEEEEEE
T ss_pred             EEcCCCceEEEEEEEEEC
Confidence            94 556677778888764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.18  E-value=1.2e-10  Score=88.51  Aligned_cols=88  Identities=10%  Similarity=-0.031  Sum_probs=64.3

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCeEEEecceEEcCCCCEEEEEeC--CCCcEEEEEccCCCCCCEEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWHILTSGVLTYTNDARFQVIHTD--GSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ..+.+.+|+++.|.|.+.+.+.+. |.|+|...  .+..      ...||....+.  .....+|.|.+++.+|+|.|+|
T Consensus       321 ~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~--~~~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  392 (524)
T 2ec8_A          321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNR--TFTD------KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF  392 (524)
T ss_dssp             SEEEECTTCCEEEEEEEEEESCCCEEEEESSSC--BCSS------SBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEE
T ss_pred             ceEEEcCCCcEEEEEEEeecCCCcEEEEEECCe--eccC------CccceeEEccCCCceeEEEEEEeecCcccCeEEEE
Confidence            468899999999999999988888 99998532  2211      12244432110  0135699999999999999999


Q ss_pred             eec-CCCCeeEEEEeceecc
Q psy14080         91 QAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        91 ~~~-~~~~~s~~~~L~V~g~  109 (113)
                      .+. ..+..+..+.|.|...
T Consensus       393 ~a~N~~g~~~~~~~l~V~~~  412 (524)
T 2ec8_A          393 LVSNSDVNAAIAFNVYVNTK  412 (524)
T ss_dssp             EEECSSCEEEEEEEEEECEE
T ss_pred             EEEecCceEEEEEEEEEecC
Confidence            994 5577788888888653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.18  E-value=2e-10  Score=76.49  Aligned_cols=77  Identities=12%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ......+.+|+++.|.|.+.+.+.+ .|.|+|...  .+.       ...+.       ....+|.|.+++  |+|.|.|
T Consensus       112 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~--~~~-------~~~~~-------~~~~~L~i~~~~--d~G~Y~C  173 (195)
T 2c5d_C          112 EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAV--PLA-------TAPGH-------GPQRSLHVPGLN--KTSSFSC  173 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSC--BSS-------SSTTS-------SCCEEEEECCCS--SCEEEEE
T ss_pred             CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCE--ecc-------CCCCc-------CCCCeEEEcccc--cCceEEE
Confidence            4445788999999999999998888 999998542  111       11121       246799999998  8999999


Q ss_pred             eec-CCCCe-eEEEEece
Q psy14080         91 QAQ-PYTTT-SHSQNAPG  106 (113)
Q Consensus        91 ~~~-~~~~~-s~~~~L~V  106 (113)
                      .+. ..+.. +..+.|.|
T Consensus       174 ~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          174 EAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEEcCCCceEEEEEEEEE
Confidence            994 44555 36788887

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.18  E-value=2.9e-12  Score=85.65  Aligned_cols=87  Identities=14%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             eEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         15 ISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...+.+|+++.|.|.+ .+.+.+.+.|+|...  .+..+..  ....+.+|.+.    ....+|.|.+++.+|+|.|+|.
T Consensus       116 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~  189 (209)
T 1nbq_A          116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI--VMPTNPKSTRAFSNSSYVLN----PTTGELVFDPLSASDTGEYSCE  189 (209)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTC--CCCSCSSSSSSCTTCCCCCC----TTTCCEEESSCCGGGCCCEEEE
T ss_pred             ccceecCCEEEEEEeCCCCCCCceeEEEECCe--eCCCccccceeeeccceEEc----CCcceEEEEeccccCCeEEEEE
Confidence            3468899999999997 778888999998542  2211110  00112344432    2456999999999999999999


Q ss_pred             ec-CCCCe--eEEEEecee
Q psy14080         92 AQ-PYTTT--SHSQNAPGL  107 (113)
Q Consensus        92 ~~-~~~~~--s~~~~L~V~  107 (113)
                      +. ..+..  +..+.|.|.
T Consensus       190 a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          190 ARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             EECSSSCCEECCCBCCEEE
T ss_pred             EeCCcCcccccccEEEEEe
Confidence            95 44544  555666654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.18  E-value=2.6e-11  Score=93.27  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=64.2

Q ss_pred             ecceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceE---EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         12 FGQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLT---YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~---~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ...++++.+|++++|+|.+ .+.+.+.|.|||......+......   ..-..|+.+.     .+.+|.|.+++.+|+|.
T Consensus       372 l~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~~v~~~D~G~  446 (581)
T 3o3u_N          372 SAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL-----PNGSLFLPAVGIQDEGI  446 (581)
T ss_dssp             CCEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC-----TTSCEEESSCCGGGCEE
T ss_pred             HhcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc-----CCceEEEeccccccCeE
Confidence            4566889999999999999 6677789999997532111100000   0013466654     24489999999999999


Q ss_pred             EEEeecC-CCCe-eEEEEeceec
Q psy14080         88 YECQAQP-YTTT-SHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~-~~~~-s~~~~L~V~g  108 (113)
                      |+|.+.. .... +..++|.|..
T Consensus       447 Y~C~~~n~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          447 FRCQAMNRNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEB
T ss_pred             EEEEEEcCCCceeEEEEEEEEEc
Confidence            9999954 3444 6778888865

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.18  E-value=7.9e-11  Score=83.53  Aligned_cols=83  Identities=11%  Similarity=0.003  Sum_probs=57.6

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|+++.|.|.+.+.+.+.|.|+|.  +..+.       .+.++.      .+...|.|.++  +|+|.|+|.+
T Consensus       212 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~--~~~l~-------~~~~~~------~~~~~L~i~~~--~d~G~Y~C~a  274 (304)
T 2yd9_A          212 PMSHEIMPGGNVNITCVAVGSPMPYVKWMQG--AEDLT-------PEDDMP------VGRNVLELTDV--KDSANYTCVA  274 (304)
T ss_dssp             CCCBCCCTTCCEEEEEEEEEESCCEEEEEET--TEECS-------CSSSCC------BSEEEEEECSC--CSCEEEEEEE
T ss_pred             CCceEEcCCCeEEEEEEEeeeCCCEEEEEEC--CEECC-------Cccccc------CCcEEEEEccc--ccCEEEEEEE
Confidence            3446788999999999999988899999984  33321       122221      24567888877  6999999999


Q ss_pred             -cCCCCeeEEEEeceeccccc
Q psy14080         93 -QPYTTTSHSQNAPGLGDLLM  112 (113)
Q Consensus        93 -~~~~~~s~~~~L~V~g~~~~  112 (113)
                       +..+..+..+.|.|.+...+
T Consensus       275 ~N~~G~~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          275 MSSLGVIEAVAQITVKSLPKA  295 (304)
T ss_dssp             EETTEEEEEEEEEC-------
T ss_pred             EeCCCcEEEEEEEEEecCccc
Confidence             56678888999999887653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.18  E-value=5.2e-11  Score=78.70  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=56.5

Q ss_pred             EEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|+++.|.|.+.+.+. +.+.|+|.  +..+.             ...    ....|.|.+++.+|+|.|.|.+..
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~--g~~~~-------------~~~----~~~~L~i~~v~~~d~G~Y~C~a~n  158 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQN--GKDRK-------------YFH----HNSDFHIPKATLKDSGSYFCRGLV  158 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEET--TEEEE-------------EEE----ECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEEC--CeEcc-------------CCC----CCCEEEEcccChhhCeEEEEEEEc
Confidence            56889999999999987654 49999984  22221             011    245899999999999999999954


Q ss_pred             -C-CCeeEEEEeceecc
Q psy14080         95 -Y-TTTSHSQNAPGLGD  109 (113)
Q Consensus        95 -~-~~~s~~~~L~V~g~  109 (113)
                       . ...+..+.|.|.|.
T Consensus       159 ~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          159 GSKNVSSETVNITITQA  175 (175)
T ss_dssp             TTEEEECCCEEEEEECC
T ss_pred             CCCCccCccEEEEEeCC
Confidence             3 35677888988874

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.18  E-value=1.6e-10  Score=84.23  Aligned_cols=87  Identities=10%  Similarity=0.066  Sum_probs=62.4

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .....+.+|+++.|.|.+.+.+.+.+.|+|..  ..+..     ....|+...  ......+|.|.+++.+|+|.|.|.+
T Consensus       219 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g--~~~~~-----~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a  289 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNG--KDVNG-----NPEDRITRH--NRTSGKRLLFKTTLPEDEGVYTCEV  289 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETT--EECCC-----CTTSSEESC--SSSTTSEEEESSCCGGGCEEEEEEE
T ss_pred             CCceEEECCCcEEEEEEeccCCCCeEEEEECC--EEcCC-----CCceeEEEE--ecCCCceEEEccCChhhCEEEEEEE
Confidence            45678999999999999998888899999843  22211     123454432  1223458999999999999999999


Q ss_pred             cC-CCC-eeEEEEeceec
Q psy14080         93 QP-YTT-TSHSQNAPGLG  108 (113)
Q Consensus        93 ~~-~~~-~s~~~~L~V~g  108 (113)
                      .. .+. .+..+.|.|..
T Consensus       290 ~n~~g~~~~~~~~l~V~~  307 (395)
T 1bih_A          290 DNGVGKPQKHSLKLTVVS  307 (395)
T ss_dssp             CCSSSSCEEEEEEEEEEE
T ss_pred             EeCCCCceEEEEEEEEEc
Confidence            54 344 34478888864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=81.57  Aligned_cols=75  Identities=16%  Similarity=0.040  Sum_probs=54.9

Q ss_pred             eEeecceEEEecCCcEEEEEE-EccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKT-VRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~-v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .......+++.+|+++.|.|. +.+.+. +.+.|+|.+.....       ..+.|....    ..+.+|.|.+++.+|+|
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~-------~~~~~~~~~----~~~~~L~i~~v~~~d~G   79 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI-------TMDKRRFVS----QTNGNLYIANVEASDKG   79 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC-------CCSSSEEEC----TTTCCEEESSCCGGGCE
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee-------eeCCCeEEE----cCCCeEEECcCCcccCe
Confidence            344456789999999999999 777777 89999985432211       123344332    13568999999999999


Q ss_pred             EEEEeecC
Q psy14080         87 TYECQAQP   94 (113)
Q Consensus        87 ~Y~C~~~~   94 (113)
                      .|.|.+..
T Consensus        80 ~Y~C~~~~   87 (201)
T 3s97_C           80 NYSCFVSS   87 (201)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999954

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=87.71  Aligned_cols=90  Identities=11%  Similarity=-0.065  Sum_probs=64.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+.+.........+.+|++++|.|.+.+.+.+ .+.|+|.+.. + .        +. ..     ..++..|.|.+++.+
T Consensus       211 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~-~-~--------~~-~~-----~~~~~~l~i~~v~~~  274 (308)
T 4fom_A          211 APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQ-W-P--------DG-LL-----ASDNTLHFVHPLTFN  274 (308)
T ss_dssp             EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSC-C-C--------SS-CB-----CSTTEEECCSCCCSC
T ss_pred             CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeE-C-C--------Cc-EE-----EcCCeEEEECCCChh
Confidence            34444333444567789999999999988877 6999985421 1 0        11 11     124567889999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEeceeccc
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~g~~  110 (113)
                      |+|.|.|.+ +..+..+..+.|.|...=
T Consensus       275 d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          275 YSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             hCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            999999999 566888889999997643

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.17  E-value=2.6e-10  Score=85.79  Aligned_cols=86  Identities=12%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             ceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .+..+.+|+++.|.|.+.+ .+.+.|.|+|... . +..+..   ......|...      ...+|.|.+++.+|+|.|.
T Consensus       235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~-~-l~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~  306 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK-A-LEEGNYFEMSTYSTNRTMI------RILFAFVSSVARNDTGYYT  306 (423)
T ss_dssp             TEEEEETTSCEEEEEEEEESSSCCCEEEEESSS-B-CCGGGEEEEEEEETTTEEE------EEEEEEESSCCTTTCEEEE
T ss_pred             CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCE-E-ccccceeecccccCCceeE------EEEEEEEeecCHHHCEEEE
Confidence            3578899999999999998 5668999998542 1 111100   0001223222      2458999999999999999


Q ss_pred             EeecCCCCeeEEEEeceecc
Q psy14080         90 CQAQPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g~  109 (113)
                      |.+...  .+..+.|.|...
T Consensus       307 C~A~N~--~~~~~~L~V~~~  324 (423)
T 3qs7_E          307 CSSSKH--PSQSALVTIVEK  324 (423)
T ss_dssp             EEETTE--EEEEEEEEEESS
T ss_pred             EEEecC--CCceEEEEEEeC
Confidence            999665  777888888653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.17  E-value=2.5e-11  Score=81.40  Aligned_cols=96  Identities=14%  Similarity=0.137  Sum_probs=59.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCE-EEEEeCCCCc--EEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARF-QVIHTDGSDD--WNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~-~~~~~~~~~~--~~L~I~~v~   81 (113)
                      |+.+. .....+++.+|+++.|.|.+.+.+.+.+.|||..  ..+....    .+.+. ... ..++..  ..|.|.+++
T Consensus         9 pp~i~-~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~~~~~----~~~~~~~~~-~~~~~~~~~~l~i~~~~   80 (212)
T 2v9r_A            9 PPRIV-EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGG--ERVETDK----DDPRSHRML-LPSGSLFFLRIVHGRKS   80 (212)
T ss_dssp             EEEEE-ECCCCEEECTTCCEEECCEEEEESCCEEEEEETT--EECCCTT----TCTTCSEEE-CTTSCEEESSCCCCSSC
T ss_pred             Cccee-cCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECC--EEeeccc----cccccceEE-ecCCcEEEEEEEecCCC
Confidence            44444 4556789999999999999998888899999843  2222110    11111 111 111222  245667889


Q ss_pred             CCCCEEEEEeecCC-CCe-eEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY-TTT-SHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~-~~~-s~~~~L~V~g  108 (113)
                      .+|+|.|.|.+... +.. +..+.|.|..
T Consensus        81 ~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~  109 (212)
T 2v9r_A           81 RPDEGVYVCVARNYLGEAVSHDASLEVAI  109 (212)
T ss_dssp             CCSCEEEEEEEEETTEEEECCCEEEEECE
T ss_pred             cccCeEEEEEEECCCCceeecceEEEEEe
Confidence            99999999999543 322 3455665543

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.17  E-value=9.8e-11  Score=72.97  Aligned_cols=87  Identities=16%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-----EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-----RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-----~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      |+..+...+.. .+.+|++++|.|.....+..     .+.|||.  +..+.             ...    ....|.|.+
T Consensus         7 ~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~--g~~l~-------------~~~----~~~~l~i~~   66 (108)
T 4hwn_A            7 PAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKD--GRIVQ-------------SRG----LSSEFQIPT   66 (108)
T ss_dssp             CCCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEET--TEEEE-------------EEE----SCCEEEESS
T ss_pred             CCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEEC--CcCcc-------------CCC----cccEEEeCc
Confidence            45555554432 47889999999998754433     3899983  22221             011    245899999


Q ss_pred             CCCCCCEEEEEeecCC-C---CeeEEEEeceecccc
Q psy14080         80 LQKRDNGTYECQAQPY-T---TTSHSQNAPGLGDLL  111 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~-~---~~s~~~~L~V~g~~~  111 (113)
                      ++.+|+|.|.|.+... +   ..|..+.|.|.|..+
T Consensus        67 v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~g~~~  102 (108)
T 4hwn_A           67 ASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQGASA  102 (108)
T ss_dssp             CCGGGCEEEEEEEECTTSSSEEECCCEEECCBC---
T ss_pred             cCcccCeEEEEEEEeCCCceeccCCCEEEEEEecch
Confidence            9999999999999643 2   457789999998653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.16  E-value=5.2e-10  Score=84.90  Aligned_cols=91  Identities=12%  Similarity=0.097  Sum_probs=62.9

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCE-EEEEecCCCe-EEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVR-VSWVRRRDWH-ILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~-V~W~k~~~~~-~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ......+.+|++++|.|.+.+.+.+. +.|+|..... +.......+..+.++.       ...+|.|.+++.+|+|.|.
T Consensus       217 ~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~  289 (524)
T 2ec8_A          217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE-------RQATLTISSARVNDSGVFM  289 (524)
T ss_dssp             SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEE-------EEEEEEESSCCTTTCEEEE
T ss_pred             cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccc-------eEEEEEECCCCHHHCEEEE
Confidence            34456899999999999999887776 9999965331 1111111111111221       3579999999999999999


Q ss_pred             Eeec-CCCCeeEEEEeceecc
Q psy14080         90 CQAQ-PYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~~-~~~~~s~~~~L~V~g~  109 (113)
                      |.+. ..+..+..+.|.|...
T Consensus       290 C~a~n~~g~~~~~~~l~V~~~  310 (524)
T 2ec8_A          290 CYANNTFGSANVTTTLEVVDK  310 (524)
T ss_dssp             EEEECSSCEEEEEEEEEEESS
T ss_pred             EEEEecCCceEEEEEEEEecc
Confidence            9995 4566667888888653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=80.48  Aligned_cols=91  Identities=12%  Similarity=0.017  Sum_probs=58.6

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ......+.+|+++.|.|.+.+.+. ..+.|++...  .+...........++.       ...+|.|.+++.+|+|.|+|
T Consensus       192 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C  262 (292)
T 4dkd_C          192 VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT--KLAIPQQSDFHNNRYQ-------KVLTLNLDQVDFQHAGNYSC  262 (292)
T ss_dssp             ESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSC--CCCCCBEEEEETTEEE-------EEEEEEESSCCTTSCEEEEE
T ss_pred             cCCceeEecCCCEEEEEEecCCCCceEEEEeCCCc--ccccCccceeccceee-------eEEEEEECccChhcCeEEEE
Confidence            333455679999999999987653 4677766432  1111111111123332       24699999999999999999


Q ss_pred             ee-cCCCCeeEEEEeceecccc
Q psy14080         91 QA-QPYTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        91 ~~-~~~~~~s~~~~L~V~g~~~  111 (113)
                      .+ +..+..+..+.|.|++...
T Consensus       263 ~a~N~~g~~~~~~~l~V~~~~~  284 (292)
T 4dkd_C          263 VASNVQGKHSTSMFFRVVESAG  284 (292)
T ss_dssp             EEECSSCEEEEEEEECC-----
T ss_pred             EEecCCCCceeEEEEEEeeCCC
Confidence            99 4567888999999988653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.16  E-value=8.8e-11  Score=80.08  Aligned_cols=75  Identities=11%  Similarity=0.000  Sum_probs=55.1

Q ss_pred             EEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|++++|.|.+.+. +.+.+.|+|..  ..+.             ...    ...+|.|.+++.+|+|.|+|.+..
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g--~~~~-------------~~~----~~~~L~i~~v~~~D~G~Y~C~a~n  158 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNG--KGRK-------------YFH----HNSDFYIPKATLKDSGSYFCRGLV  158 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETT--EEEE-------------EEE----ECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECC--cEee-------------ccc----CCceEEECcCCcccCEEEEEEEEe
Confidence            578899999999999654 56789999842  2221             011    244899999999999999999954


Q ss_pred             -C-CCeeEEEEeceecc
Q psy14080         95 -Y-TTTSHSQNAPGLGD  109 (113)
Q Consensus        95 -~-~~~s~~~~L~V~g~  109 (113)
                       . ...+..+.|.|.+.
T Consensus       159 ~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          159 GSKNVSSETVQITITQG  175 (204)
T ss_dssp             TTEEEECCCEEEEEEC-
T ss_pred             CCCceecCcEEEEEeCc
Confidence             2 35567788888764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.16  E-value=1.7e-11  Score=82.38  Aligned_cols=90  Identities=13%  Similarity=-0.032  Sum_probs=59.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..++.... .++.+|++++|.|.+.+.+. .+.|+|...  .+...     ...+..     .....+|.|.+++.+|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~--~~~~~-----~~~~~~-----~~~~~~L~i~~v~~~D   69 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKK--TAPWI-----TRIPQE-----LVKKGQFPIPSITWEH   69 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSS--CCHHH-----HTSCHH-----HHTTTEEEESSCCGGG
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCc--ccccc-----cccccc-----CCcccEEEECCCCHHH
Confidence            3444444444 48999999999999987765 699998532  11100     011100     1135689999999999


Q ss_pred             CEEEEEeecCCC----CeeEEEEeceec
Q psy14080         85 NGTYECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      +|.|.|.+....    ..+..+.|.|.+
T Consensus        70 ~G~Y~C~a~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           70 TGRYRCYYGSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             CEEEEEEEEETTTEECCCCCCEEEEEEC
T ss_pred             CeEEEEEEECCCCCcccCCccEEEEEcc
Confidence            999999995432    335667787776

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.15  E-value=2.7e-11  Score=84.96  Aligned_cols=91  Identities=18%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .|+.........+.+.+|+++.|.|.+.+ +.  +.|.|+|.++. .+       ..+.|+...     .+..|.|.+++
T Consensus        87 ~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~-~~-------~~~~~~~~~-----~~~~L~i~~~~  152 (292)
T 4dkd_C           87 DPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGR-PL-------MRHTNYSFS-----PWHGFTIHRAK  152 (292)
T ss_dssp             CSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGC-CC-------CSSCCEECC-----SSSCCEETTCC
T ss_pred             CccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCC-cc-------ccCCccccc-----CCceEEECCCC
Confidence            34554455566788999999999999997 43  67999986422 21       234566543     23349999999


Q ss_pred             CCCCEEEEEeecCC-C-CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY-T-TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~-~-~~s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+... . ..+..+.|.|.+
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            99999999999643 3 334567888775

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.15  E-value=5.4e-11  Score=85.76  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             EEecCCcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC-
Q psy14080         17 TGFLAVFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP-   94 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-   94 (113)
                      .+.+|+++.|.|.+.+.+ .+.|.|||..  ..+.      ..+.||...      +.+|.|.+++.+|+|.|+|.+.. 
T Consensus       139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~--~~l~------~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKHYNNITWYKNN--QELI------IDGTKYSQS------GQNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCCCCEEEEEETT--EECC------CSSSSEEEE------TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEeCCCcEEEEeccCCCCCCceEEEEECC--ccCC------CCCceEecC------CCEEEEeecChhhCEEEEEEEEec
Confidence            457799999999999988 8999999843  2221      135677654      35899999999999999999953 


Q ss_pred             --CCC----eeEEEEeceecc
Q psy14080         95 --YTT----TSHSQNAPGLGD  109 (113)
Q Consensus        95 --~~~----~s~~~~L~V~g~  109 (113)
                        .+.    .+..+.|.|.+.
T Consensus       205 ~~~g~~~~~~s~~~~l~V~~~  225 (329)
T 3oq3_B          205 DVRIKNDIVVSRCKILTVIPS  225 (329)
T ss_dssp             CTTSSSCEEEEEEEEEEEECC
T ss_pred             ccCCCceeEEEeeEEEEEECC
Confidence              222    234477888654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.14  E-value=4e-10  Score=81.15  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             ecceEEEecCCcEEEEEEEccCC---CC-EEEEEecCCCeEEEecceEEcCCCCEEEE--EeCCCCcEEEEEccCCCCCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIV---KV-RVSWVRRRDWHILTSGVLTYTNDARFQVI--HTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~---~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~--~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+..+.+.+|++++|.|.+.+.+   .+ .|.|+|.. ..++.       .+.+....  .+......+|.|.+++.+|+
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g-~~i~~-------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  305 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS-GWIIG-------LDFGVYSILTSSGGITEATLYFENVTEEYI  305 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTT-SCBCC-------BCSSEEEEEEEETTEEEEEEEESSCCGGGT
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECC-eeeec-------cCCceeeeecccCceeEeEEEEEeccHHHC
Confidence            45568899999999999999887   66 88999853 22221       12222111  01111367999999999999


Q ss_pred             E-EEEEeec-CCCCeeEEEEecee
Q psy14080         86 G-TYECQAQ-PYTTTSHSQNAPGL  107 (113)
Q Consensus        86 G-~Y~C~~~-~~~~~s~~~~L~V~  107 (113)
                      | .|+|.+. ..+..+..+.|.|+
T Consensus       306 G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          306 GNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             TCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCcEEEEEEecCCceEEEEEEEeC
Confidence            9 9999994 56777788888774

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.14  E-value=6.5e-11  Score=79.56  Aligned_cols=81  Identities=14%  Similarity=0.025  Sum_probs=46.4

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ..+.+|++++|.|.+.+.+ +.+.|+|... .+.....     ..  ... .......+|.|.+++.+|+|.|.|.+...
T Consensus       109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~-~~~~~~~-----~~--~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  178 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF-DRFILTEEGD-HKLSWTL-----DS--QLT-PSGQFQALFPVGPVTPSHRWMLRCYGSRR  178 (196)
T ss_dssp             --------CEEEEEESSCC-SEEEEEEC----CCEEEE-----EC--EEC-TTSCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred             ccccCCCcEEEEEEcCCCC-CEEEEEccCC-ccccccc-----cc--ccc-cCCCceeEEEeeecCcccCeeEEEEEEcc
Confidence            4788999999999999887 8999998542 1110000     00  011 01123579999999999999999999532


Q ss_pred             ------CCeeEEEEece
Q psy14080         96 ------TTTSHSQNAPG  106 (113)
Q Consensus        96 ------~~~s~~~~L~V  106 (113)
                            ...|..+.|.|
T Consensus       179 ~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          179 HILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             TEEEEECCCCCCEEECC
T ss_pred             CCCCccCCCCccEEEEe
Confidence                  13455666665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.13  E-value=2.7e-11  Score=86.70  Aligned_cols=84  Identities=14%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      ...+.+|+++.|.|.+.+.+.+.|.|+|..  ..+.       .+.|+.... .....++|.|.+++.+|+|.|.|.+. 
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~--~~~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n  201 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNG--REFR-------GEHRIGGIK-LRHQQWSLVMESVVPSDRGNYTCVVEN  201 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTT--BCCC-------TTSSTTCCC-CCTTTTEEEECSCCGGGCCCEEEEEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECC--EECc-------cccccccee-cccceEEEEECCCCcccCEEEEEEEEe
Confidence            467889999999999998888899999843  2221       122221111 12356799999999999999999994 


Q ss_pred             CCCCeeEEEEeceec
Q psy14080         94 PYTTTSHSQNAPGLG  108 (113)
Q Consensus        94 ~~~~~s~~~~L~V~g  108 (113)
                      ..+..+..+.|.|..
T Consensus       202 ~~g~~~~~~~l~V~~  216 (334)
T 1ry7_B          202 KFGSIRQTYTLDVLE  216 (334)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEec
Confidence            446667778888875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.13  E-value=4.1e-10  Score=81.98  Aligned_cols=84  Identities=17%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      .+.+.+|+++.|.|.+.+.+.+.|.|+|.  +..+..     ....|+.+..  +....+|.|.+++.+|+|.|.|.+. 
T Consensus       109 ~~~~~~g~~~~l~C~~~g~p~~~i~W~~~--g~~l~~-----~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N  179 (389)
T 2jll_A          109 IYYSWEGNPINISCDVKSNPPASIHWRRD--KLVLPA-----KNTTNLKTYS--TGRKMILEIAPTSDNDFGRYNCTATN  179 (389)
T ss_dssp             EEEECTTCCEEEEECEEEESCCEEEEEET--TEESSC-----TTCTTEEEEE--CSSCEEEEECCCSTTSSEEEEEEEEE
T ss_pred             eEEeccCCEEEEEEEEEecCCCeEEEEEC--CccCCc-----ccCceEEEec--cCCEEEEEECCCChhhCEEEEEEEEc
Confidence            34678999999999999988899999984  333221     1234777653  3456799999999999999999994 


Q ss_pred             CCCCeeEEEEecee
Q psy14080         94 PYTTTSHSQNAPGL  107 (113)
Q Consensus        94 ~~~~~s~~~~L~V~  107 (113)
                      ..+..+..+.|.|.
T Consensus       180 ~~G~~~~~~~l~v~  193 (389)
T 2jll_A          180 HIGTRFQEYILALA  193 (389)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEec
Confidence            55566666666654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.13  E-value=3.7e-10  Score=74.29  Aligned_cols=75  Identities=8%  Similarity=-0.024  Sum_probs=55.3

Q ss_pred             cceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .....+.+|+++.|.|.+.+.+.+ .+.|+|..  ..+.        ...        ....+|.|.++  +|+|.|+|.
T Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~--~~~~--------~~~--------~~~~~L~i~~~--~d~G~Y~C~  164 (182)
T 1rhf_A          105 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGT--TKIG--------GPA--------PSPSVLNVTGV--TQSTMFSCE  164 (182)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEETT--EECS--------CSE--------ESSEEEEECCC--SSCEEEEEE
T ss_pred             CcceEecCCCEEEEEeEecCCCCCCEEEEEcCC--eECC--------CCC--------CCceEEEEecc--ccCeEEEEE
Confidence            445788999999999999998888 99999843  2221        110        04679999998  599999999


Q ss_pred             ec-CCCCe-eEEEEecee
Q psy14080         92 AQ-PYTTT-SHSQNAPGL  107 (113)
Q Consensus        92 ~~-~~~~~-s~~~~L~V~  107 (113)
                      +. ..+.. +..+.|.|+
T Consensus       165 a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          165 AHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EECCCCCcccceEEEEeC
Confidence            95 44444 357777764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.13  E-value=5.2e-12  Score=99.28  Aligned_cols=83  Identities=19%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      .+.++.+|++++|.|.+.+.+.+.|.|+|..  ..+.       .+.|+.+..    +..+|.|.+++.+|+|.|.|.+ 
T Consensus       674 ~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g--~~l~-------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~  740 (772)
T 3v2a_R          674 ENQTTSIGESIEVSCTASGNPPPQIMWFKDN--ETLV-------EDSGIVLKD----GNRNLTIRRVRKEDEGLYTCQAC  740 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEeCCCCEEEEEEeCccCCCeEEEEECC--eECc-------CCCCeEEcC----CCcEEEECcCCHHHCEEEEEEEE
Confidence            4577899999999999999888999999843  2221       234555432    3569999999999999999999 


Q ss_pred             cCCCCeeEEEEeceecc
Q psy14080         93 QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g~  109 (113)
                      +..+..+..+.|.|.|.
T Consensus       741 N~~G~~~~~~~l~V~~~  757 (772)
T 3v2a_R          741 SVLGCAKVEAFFIIEGA  757 (772)
T ss_dssp             -----------------
T ss_pred             eCCcceeEEEEEEEECC
Confidence            55678888899999874

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.12  E-value=1.6e-09  Score=68.02  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             ceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEE-EEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         14 QISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQV-IHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...++..|++..|.|.+.+. ..|.|.|-|.++..-+..       ..|.+. ....+-..|.|++.+|-++|+|.|.|.
T Consensus        19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L-------~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCs   91 (120)
T 2aw2_A           19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL-------EDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   91 (120)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEEC-------CSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEEC-------ccccccceecCCeeEEEEEEeeeeEcCCcceEEE
Confidence            34688999999999999984 789999998765333221       223331 111222368999999999999999999


Q ss_pred             ecCCC--CeeEEEEeceecccccC
Q psy14080         92 AQPYT--TTSHSQNAPGLGDLLMH  113 (113)
Q Consensus        92 ~~~~~--~~s~~~~L~V~g~~~~~  113 (113)
                      ++...  ..|..+.+.|.|..--|
T Consensus        92 An~~sg~ieSHsvtI~Vt~~~~~~  115 (120)
T 2aw2_A           92 ANFQSNLIESHSTTLYVTDVKHHH  115 (120)
T ss_dssp             EEETTEEEECCCEEEEEECGGGCC
T ss_pred             eeCCCCcEEeeEEEEEEEeccccc
Confidence            97543  44777888888876543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.11  E-value=5.3e-11  Score=92.03  Aligned_cols=80  Identities=8%  Similarity=-0.028  Sum_probs=60.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      ..+.+.+|+++.|.|.+.+.+.+.|.|+|.  +..+.       .+.|+.      .+.++|.|.+++.+|+|.|+|.+ 
T Consensus       334 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~--g~~l~-------~~~~~~------~~~~~L~I~~v~~~D~G~YtC~A~  398 (527)
T 3qs9_E          334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFS--RKSFP-------CEQKGL------DNGYSISKFCNHKHQPGEYIFHAE  398 (527)
T ss_dssp             CEECCCTTCCCCEEEEEEEESCCEEEEEET--TEEEE-------CBCCBC------SSSSEEEEECCCTTCCSCEEEEEE
T ss_pred             ccEEEcCCCeEEEEEEEEecCCCEEEEEEC--CEECc-------CCcccc------cCCcEEEEecCCcccCEEEEEEEE
Confidence            456788999999999999999999999983  44442       122321      14668999999999999999999 


Q ss_pred             cCCCCeeEEEEeceec
Q psy14080         93 QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g  108 (113)
                      +..+..+..+.|.|..
T Consensus       399 N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          399 NDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             ETTEEEEEEEEEC--C
T ss_pred             eCCCcEEEEEEEEEec
Confidence            4556777788998874

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.11  E-value=2.2e-10  Score=83.31  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+.........+.+|+++.|.|.+.+.+.+.+.|+|.+..  +         ..++      .....+|.|.+++.+|
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~--~---------~~~~------~~~~~~L~i~~~~~~d  268 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--Q---------TSKW------LSSEPLLHIQNVDFED  268 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSC--C---------SCCC------SBSSSEEEECSCCGGG
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcc--c---------ccEE------ecCCcEEEEccCChhh
Confidence            344444445678899999999999999888889999985422  1         0111      1235689999999999


Q ss_pred             CEEEEEeec-CCCCeeEEEEeceec
Q psy14080         85 NGTYECQAQ-PYTTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~s~~~~L~V~g  108 (113)
                      +|.|.|.+. ..+..+..+.|.|..
T Consensus       269 ~G~Y~C~a~n~~g~~~~~~~l~V~~  293 (382)
T 1cs6_A          269 EGTYECEAENIKGRDTYQGRIIIHA  293 (382)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCeEEEEEEEEEec
Confidence            999999994 556667778887764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.11  E-value=1.7e-10  Score=76.10  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=57.1

Q ss_pred             EEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|+++.|.|.+. +.+.+.+.|+|.  +..+.                 ......+|.|.+++.+|+|.|+|.+..
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~-----------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n  155 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKD--GEALK-----------------YWYENHNISITNATVEDSGTYYCTGKV  155 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEET--TEECC-----------------SCCCSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEEC--CEEEe-----------------eecCCCeEEECCCCcccCEEEEEEEEe
Confidence            4678999999999994 556679999983  22221                 011345999999999999999999954


Q ss_pred             --CCCeeEEEEeceecccc
Q psy14080         95 --YTTTSHSQNAPGLGDLL  111 (113)
Q Consensus        95 --~~~~s~~~~L~V~g~~~  111 (113)
                        ....+..+.|.|.+.-.
T Consensus       156 ~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          156 WQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             TTEEEECCCEEEEEECSCC
T ss_pred             CCcceEecCEEEEEecCCC
Confidence              23456678888887543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.10  E-value=3.9e-11  Score=81.59  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             EecCCcEEEEEEEccCC----CCEEEEEecCCCeEEEecc--eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         18 GFLAVFSYSDKTVRDIV----KVRVSWVRRRDWHILTSGV--LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~----~~~V~W~k~~~~~~l~~~~--~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      +.+|++++|.|.+.+.+    ...|.|||.+ ..+.....  .....+.+|..       ..+|.|.+++.+|+|.|+|.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~   86 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTKPREEQFNSTFRS-------VSELPIMHQDWLNGKEFKCR   86 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETT-EEECCCEEECCCEETTTEEEE-------EEEEECCHHHHHTTCCEEEE
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECC-ccccccccCCCcCcCCCcEEE-------EEEEEEehhHcCCCCEEEEE
Confidence            78999999999998773    3489999965 22211100  00112344432       34899999999999999999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus        87 a~~   89 (207)
T 2vol_A           87 VNS   89 (207)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            964

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=6.8e-10  Score=77.94  Aligned_cols=90  Identities=10%  Similarity=-0.045  Sum_probs=60.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..++..... .+.+|++|+|.|.... ....+.|||..  ..+...      ..+..    ......+|.|.+++.+|
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g--~~~~~~------~~~~~----~~~~~~~L~I~~v~~~D   71 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEG--SLFAVD------RPKPP----ERINKVKFYIPDMNSRM   71 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETT--EEEEEE------CCSSC----TTCCEEEEEECSCCGGG
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECC--Cccccc------ccccc----CCcceeEEEecCCCccc
Confidence            55555555555 8999999999999875 34678999843  222110      01110    12346799999999999


Q ss_pred             CEEEEEeecCC---CCeeEEEEeceec
Q psy14080         85 NGTYECQAQPY---TTTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~---~~~s~~~~L~V~g  108 (113)
                      +|.|.|.+...   ...+..+.|.|.|
T Consensus        72 sG~Y~C~~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           72 AGQYSCIYRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             CEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CeEEEEEEecCCccccCCcceEEEeec
Confidence            99999999532   1335667777775

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.10  E-value=4.9e-10  Score=86.96  Aligned_cols=73  Identities=16%  Similarity=0.008  Sum_probs=57.2

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+.++.+|++++|.|.+.+.+.+.|.|+|.  +..+.                    ...+|.|.+++.+|+|.|.|.+
T Consensus       566 ~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~--g~~i~--------------------~~~~L~i~~~~~~d~G~Y~C~a  623 (642)
T 1e07_A          566 PPDSSYLSGANLNLSCHSASNPSPQYSWRIN--GIPQQ--------------------HTQVLFIAKITPNNNGTYACFV  623 (642)
T ss_pred             CCceeEEcCCcEEEEEEeccCCCCeEEEEEC--CEECc--------------------cCceEEECcccccCCeEEEEEE
Confidence            4567899999999999999999899999983  22221                    1238999999999999999999


Q ss_pred             c-CCCCeeEEEEecee
Q psy14080         93 Q-PYTTTSHSQNAPGL  107 (113)
Q Consensus        93 ~-~~~~~s~~~~L~V~  107 (113)
                      . ..+..+..+.|.|.
T Consensus       624 ~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          624 SNLATGRNNSIVKSIT  639 (642)
T ss_pred             EecccCcceeEEEEEE
Confidence            4 55666666666664

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.09  E-value=4.2e-10  Score=77.55  Aligned_cols=78  Identities=14%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ++..+..+++.+|+++.|.|.+.+.+.+ .+.|+|.  +..+.                   ....+|.|.+++.+|+|.
T Consensus         4 i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~--g~~~~-------------------~~~~~l~i~~~~~~d~G~   62 (262)
T 3rjd_A            4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN--GTATQ-------------------TSTPSYRITSASVNDSGE   62 (262)
T ss_dssp             EEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEET--TEECS-------------------CCSSEEEESSCCGGGCEE
T ss_pred             EecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEEC--CEEee-------------------ccCCeEEEecCCcccCeE
Confidence            4445566789999999999999888766 8999983  22211                   124479999999999999


Q ss_pred             EEEeecCCCCeeEEEEeceec
Q psy14080         88 YECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      |.|.+... ..+..+.|.|..
T Consensus        63 Y~C~~~~~-~~s~~~~l~v~~   82 (262)
T 3rjd_A           63 YRCQRGLS-GRSDPIQLEIHR   82 (262)
T ss_dssp             EEEEESSS-CCCCCEEEEEEC
T ss_pred             EEEEEecC-CccccEEEEEec
Confidence            99999542 233345666653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.09  E-value=4.4e-10  Score=73.29  Aligned_cols=74  Identities=15%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             eEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         15 ISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ...+.+|+++.|.|.+. +.+.+.+.|+|.  +..+.             ..    .....|.|.+++.+|+|.|+|.+.
T Consensus        94 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~-------------~~----~~~~~L~i~~v~~~d~G~Y~C~a~  154 (170)
T 3ry4_A           94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQN--GKSQK-------------FS----HLDPTFSIPQANHSHSGDYHCTGN  154 (170)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCEEEEEEEET--TEEEE-------------EE----SSCCEEEESSCCGGGCEEEEEEEE
T ss_pred             CceeecCCeEEEEEECCCCCCCceEEEEEC--CeEcc-------------cc----CCCCeEEEEeccccCCEEEEEEEE
Confidence            45678999999999994 556688999983  22221             11    124479999999999999999995


Q ss_pred             -CCCC-eeEEEEecee
Q psy14080         94 -PYTT-TSHSQNAPGL  107 (113)
Q Consensus        94 -~~~~-~s~~~~L~V~  107 (113)
                       ..+. .+..+.|.|.
T Consensus       155 n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          155 IGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             ETTEEEECCCEEEEEC
T ss_pred             eCcCccccccEEEEEC
Confidence             3343 4666777663

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.08  E-value=3.3e-11  Score=82.70  Aligned_cols=82  Identities=13%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             CceeeEeecceEE-EecCCcEEEEEEEccCC----CCEEEEEecCCCeEEEec--ceEEcCCCCEEEEEeCCCCcEEEEE
Q psy14080          5 PGGILTAFGQIST-GFLAVFSYSDKTVRDIV----KVRVSWVRRRDWHILTSG--VLTYTNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         5 p~~i~~~~~~~~t-v~~G~~a~L~C~v~~~~----~~~V~W~k~~~~~~l~~~--~~~~~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      |+.|...-..... +.+|++|+|.|.+.+.+    .+.|.|||.+ ..+....  ......+.+|..       ..+|+|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~-------~~~L~I   80 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQTHREDYNSTIRV-------VSTLPI   80 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETT-EEECCCEEEEEEETTTTEEEE-------EEEEEC
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECC-ccccCcccccccccCCCeEEE-------EEEEEE
Confidence            4455544333222 78999999999998763    3789999965 2221100  001112445543       348999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++.+|+|.|+|.+..
T Consensus        81 ~~~~~~D~g~Y~C~~~~   97 (218)
T 2rgs_A           81 QHQDWMSGKEFKCKVNN   97 (218)
T ss_dssp             CHHHHHTTCCEEEEEEE
T ss_pred             cHHHcCCCCeEEEEEEC
Confidence            99999999999999954

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.07  E-value=4.8e-10  Score=76.57  Aligned_cols=86  Identities=8%  Similarity=0.078  Sum_probs=54.3

Q ss_pred             ceEEEecCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcE-EEEEccCCCCCCEEEEEe
Q psy14080         14 QISTGFLAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDW-NLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~   91 (113)
                      ....+.+|+.+.|.|.+.+ .+.+.|.|+|.+ +.++...      ..+  ... ...+.+ .+.|.+++.+|+|.|+|.
T Consensus       126 ~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~-~~~~~~~------~~~--~~~-~~~g~~~v~s~l~v~~~d~G~YtC~  195 (226)
T 4f80_A          126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK-GENIPTV------EAP--VVA-DGVGLYAVAASVIMRGSSGEGVSCT  195 (226)
T ss_dssp             EEEEEEETTEEEEEEEEEEEBSCCEEEEECTT-SCBCCCE------ECC--CEE-CTTSCEEEEEEEEECC----CEEEE
T ss_pred             ceeeeccCCceeeEEEeccCCCCCEEEEEECC-ceEcCCC------ceE--EEE-CCCCcEEEEEEEEechhcCcEEEEE
Confidence            3456788999999999987 488999999854 2222211      011  111 112222 344667889999999999


Q ss_pred             e-cCCCCeeEEEEeceecc
Q psy14080         92 A-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V~g~  109 (113)
                      + +..+..+..+.|.|.+.
T Consensus       196 a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          196 IRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EEETTTTEEEEEEECCCTT
T ss_pred             EEeCCCCeEEEEEEEECCC
Confidence            9 45677888889988754

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.06  E-value=1.5e-09  Score=77.01  Aligned_cols=93  Identities=14%  Similarity=-0.031  Sum_probs=60.5

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..+..... ..+.+|++++|.|.... +...+.|||........ .     ...++.    ....+.+|.|.+++.+|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~-~-----~~~~~~----~~~~~~~L~I~~v~~~D   73 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTL-H-----LIGEHH----DGVSKANFSIGPMMQDL   73 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEE-E-----EECBCC----TTCEEEEEEECSCCTTT
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcc-e-----eeeecc----CCCceEEEEeecCCccc
Confidence            4444444443 57899999999999974 45789999965321110 0     001110    12246799999999999


Q ss_pred             CEEEEEeecC-C-----CCeeEEEEeceecc
Q psy14080         85 NGTYECQAQP-Y-----TTTSHSQNAPGLGD  109 (113)
Q Consensus        85 ~G~Y~C~~~~-~-----~~~s~~~~L~V~g~  109 (113)
                      +|.|.|.+.. .     ...+..+.|.|.+.
T Consensus        74 sG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           74 AGTYRCYGSVTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             CEEEEEEEECSSCTTSCCCCCCCEEEEEECS
T ss_pred             CEEEEEeEeccCCCccccccCCCEEEecccC
Confidence            9999999842 1     13356678888763

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.06  E-value=2.4e-10  Score=80.38  Aligned_cols=88  Identities=17%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+.+. .....+.+.+|+++.|.|.+.+ +. +.|.|++.++. .+       ..+.|+...     ....|.|.+++.+
T Consensus        91 ~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~-~l-------~~~~~~~~~-----~~~~L~i~~v~~~  155 (290)
T 2o26_X           91 PAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGK-SL-------PTDLTFVPN-----PKAGITIKNVKRA  155 (290)
T ss_dssp             SSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSC-CC-------CTTCEEEEE-----TTTEEEEESCCGG
T ss_pred             CCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCc-CC-------CCCCceeeC-----CCCCEEEecccHH
Confidence            33333 3455678899999999999996 66 89999876532 22       234566654     2348999999999


Q ss_pred             CCE-EEEEeecCCCC--eeEEEEecee
Q psy14080         84 DNG-TYECQAQPYTT--TSHSQNAPGL  107 (113)
Q Consensus        84 D~G-~Y~C~~~~~~~--~s~~~~L~V~  107 (113)
                      |+| .|.|.+.....  .+..+.|.|.
T Consensus       156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          156 YHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             GTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             HCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            999 99999964332  2345677765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.06  E-value=5.4e-10  Score=78.44  Aligned_cols=83  Identities=16%  Similarity=0.038  Sum_probs=55.3

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++.....+++.+|++++|.|.+.+.    |.|+|.... +          +.|+.... .+....+|.|.+++.+|+|.|
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-~----------~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y   66 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQE-P----------PQEMAKAQ-DGTFSSVLTLTNLTGLDTGEY   66 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBC-C----------SEEEEECT-TSCEEEEEEECSCCGGGCEEE
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCC-c----------ccceeccC-CCceeEEEEEccCChhhCEEE
Confidence            3445567889999999999999864    999985421 1          12222211 111246999999999999999


Q ss_pred             EEeecC-CCC---eeEEEEecee
Q psy14080         89 ECQAQP-YTT---TSHSQNAPGL  107 (113)
Q Consensus        89 ~C~~~~-~~~---~s~~~~L~V~  107 (113)
                      .|.+.. .+.   .+..++|.|.
T Consensus        67 ~C~a~n~~g~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           67 FCTHNDSRGLETDERKRLYIFVP   89 (289)
T ss_dssp             EEECCC------CCCEEEEEECC
T ss_pred             EEEEcccCCCCcCcEEeEEEEEE
Confidence            999954 222   3455666655

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.06  E-value=4e-10  Score=75.60  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=48.2

Q ss_pred             EecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEcc-CCCCCCEEEEEeec-CC
Q psy14080         18 GFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKF-LQKRDNGTYECQAQ-PY   95 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~~~-~~   95 (113)
                      +.+|++++|.|.+.+ + +.|.|+|.  +..+..       +           .+.+|.|.+ ++.+|+|.|.|.+. ..
T Consensus        11 ~~~G~~v~L~C~~~~-~-~~i~W~k~--g~~l~~-------~-----------~~~~L~I~~~~~~~D~G~Y~C~a~n~~   68 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-D-ENLKWEKN--GQELPQ-------K-----------HDKHLVLQDFSEVEDSGYYVCYTPASN   68 (186)
T ss_dssp             EEETTEEEEECSSCC-C-TTCEEEET--TEEECS-------C-----------CCSEEEEESCCTTTSCEEEEEECSSCC
T ss_pred             EeCCcEEEEEEeCCC-C-CceEEEEC--CEECCC-------C-----------CCCEEEECCCCccccCEEEEEEEEeCC
Confidence            467999999999987 3 34999983  333211       1           233899999 99999999999995 44


Q ss_pred             CCeeEEEEecee
Q psy14080         96 TTTSHSQNAPGL  107 (113)
Q Consensus        96 ~~~s~~~~L~V~  107 (113)
                      +..+..+.+.|.
T Consensus        69 g~~~~~~~~~v~   80 (186)
T 1jbj_A           69 KNTYLYLKARVG   80 (186)
T ss_dssp             CCCCEEECCCCC
T ss_pred             CcEEEEEEEEEe
Confidence            555555555543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.05  E-value=4.7e-10  Score=87.10  Aligned_cols=92  Identities=12%  Similarity=-0.019  Sum_probs=61.7

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC----eEEEe--cceEEcC----CCCEEEEEeCCCCcEEEEEccCC
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW----HILTS--GVLTYTN----DARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~----~~l~~--~~~~~~~----~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .+..+.+.+|++|+|+|.....+...|.|||....    .+...  +......    .+|+.+.     .+.+|.|.+++
T Consensus         5 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~-----~~~sL~I~~v~   79 (642)
T 1e07_A            5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY-----PNASLLIQNII   79 (642)
T ss_pred             eccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeec-----cCCcEEECCCC
Confidence            35567889999999999977666678999995421    12211  1100011    2466554     35699999999


Q ss_pred             CCCCEEEEEeecCC--CCeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPY--TTTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~--~~~s~~~~L~V~g  108 (113)
                      .+|+|.|.|.+...  ...+..+.|.|..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (642)
T 1e07_A           80 QNDTGFYTLHVIKSDLVNEEATGQFRVYP  108 (642)
T ss_pred             cccCcEEEEEEEcCCCeEEEEEEEEEecc
Confidence            99999999999643  3335667777765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.05  E-value=5.7e-10  Score=86.26  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=59.4

Q ss_pred             cceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         13 GQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ..++.+.+|+++.|.|.+. +.+.+.|.|+|....  +..+.    ..+ ...|...      ...+|.|.+++.+|+|.
T Consensus       234 p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~--l~~~~~~~~~~~-~~~~~~~------~~~~L~I~~v~~~DsG~  304 (527)
T 3qs9_E          234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA--LEEGNYFEMSTY-STNRTMI------RILFAFVSSVARNDTGY  304 (527)
T ss_dssp             CCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC--CCGGGEEEEEEE-ETTTEEE------EEEEEEESSCCGGGCEE
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE--CCCCceeeeeee-ccCccee------eEEEEEEccCCcccCeE
Confidence            3467889999999999997 788889999985421  11110    000 1112211      24589999999999999


Q ss_pred             EEEeecCCCCeeEEEEeceec
Q psy14080         88 YECQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        88 Y~C~~~~~~~~s~~~~L~V~g  108 (113)
                      |.|.+...  .+..+.|.|..
T Consensus       305 Y~C~a~N~--~~~~~~L~V~~  323 (527)
T 3qs9_E          305 YTCSSSKH--PSQSALVTIVE  323 (527)
T ss_dssp             EEEEETTE--EEEEEEEEEC-
T ss_pred             EEEEEEeC--CCceEEEEEEc
Confidence            99999664  67778888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	1e-06
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	4e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.004

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 23/65 (35%)

Query: 36  VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY 95
            R+ W + +   +                   D +++ ++ I  L+  D GTYEC    Y
Sbjct: 28  TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY 87

Query: 96  TTTSH 100
              + 
Sbjct: 88  EKDAF 92

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-06
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 59  DARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTTSH 100
            +++    +  SD W L++  LQ +D G Y+C       T  
Sbjct: 55  HSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 96

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 24  SYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSD-DWNLQIKFLQK 82
           + +   V          V                   R +++     +    L+I+ ++ 
Sbjct: 31  NATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF 90

Query: 83  RDNGTYECQAQ 93
            D G Y C  +
Sbjct: 91  SDEGGYTCFFR 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.81
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.81
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.8
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	99.8
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.8
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.79
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	99.79
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.79
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.79
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	99.78
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.78
d2avga1	110	Cardiac myosin binding protein C, different domain	99.78
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	99.78
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	99.78
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.78
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	99.78
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	99.77
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	99.77
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	99.77
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.77
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.77
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	99.77
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	99.77
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	99.77
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.76
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	99.76
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	99.76
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	99.76
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	99.76
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.76
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	99.76
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.75
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.75
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	99.75
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	99.75
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	99.74
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	99.74
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	99.74
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	99.74
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	99.74
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	99.74
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	99.74
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.73
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.73
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.73
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.73
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	99.73
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.73
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.73
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	99.73
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.73
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	99.73
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	99.73
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	99.73
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	99.73
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	99.72
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	99.72
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	99.72
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.72
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	99.72
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	99.72
d8faba1	103	Immunoglobulin light chain lambda variable domain,	99.72
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.71
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	99.71
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.71
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.71
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.7
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.7
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	99.7
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.69
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	99.69
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	99.69
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.69
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	99.69
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	99.68
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	99.68
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	99.68
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	99.68
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	99.67
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	99.67
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	99.66
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	99.66
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.66
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	99.65
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.65
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.65
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	99.65
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	99.65
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.64
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	99.64
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	99.64
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	99.64
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	99.64
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	99.63
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	99.63
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.63
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.63
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	99.63
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	99.63
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.63
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	99.62
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	99.62
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	99.62
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.62
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	99.62
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	99.62
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	99.62
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	99.61
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	99.61
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	99.61
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	99.61
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	99.61
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	99.61
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	99.61
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	99.61
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	99.61
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	99.6
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	99.59
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	99.59
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	99.59
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	99.59
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	99.59
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	99.59
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	99.59
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	99.59
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	99.59
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	99.59
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	99.59
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	99.58
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	99.58
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	99.58
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.58
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	99.58
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.58
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	99.58
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.58
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	99.58
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	99.58
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	99.57
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.57
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	99.57
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	99.57
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	99.57
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	99.57
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	99.57
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	99.57
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	99.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	99.56
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.56
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.56
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	99.56
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	99.55
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	99.55
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	99.55
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	99.54
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	99.54
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	99.54
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	99.54
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	99.54
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	99.54
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	99.52
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	99.51
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.5
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.47
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.47
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.47
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.45
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.42
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.41
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.38
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.35
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.12
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.11
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.84
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.81
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.8
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.61
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.58
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.43
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.4
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.34
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.24
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.1
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.05
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.96
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.88
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.83
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.76
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.76
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.74
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.5
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.33
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.3
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.27
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.26
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.24
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.23
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.18
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.12
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.09
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.05
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.0
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.99
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.96
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.89
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.89
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.85
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.81
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.76
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.67
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.66
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.64
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.59
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.59
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.57
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.55
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.43
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.4
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.39
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.31
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.28
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.22
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.92
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.87
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.84
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.7
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.69
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.69
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.59
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.2
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.12
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	94.63
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.62
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	93.92
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	90.0
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	86.7
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	80.88

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.81  E-value=1.3e-19  Score=113.09  Aligned_cols=85  Identities=22%  Similarity=0.250  Sum_probs=66.7

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+..+++.+|++|+|+|..++.....++||||.+   +..+..+....  ...+||.+.  ++++.++|+|+++++
T Consensus         3 ~~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~--~~~~~~~L~I~~~~~   80 (107)
T d1ospl1           3 QMSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS--DSGKDYTLSITSLQT   80 (107)
T ss_dssp             CEECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSSEEEEESSCCG
T ss_pred             CEEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee--cCCCeEEeEEccccc
Confidence            45677888999999999999999877666899999984   33443332222  235799886  466789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1ospl1          81 EDVATYFCQQYW   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             ccCCcEEEeecc
Confidence            999999999853

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.6e-19  Score=112.66  Aligned_cols=100  Identities=20%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---e-EEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---H-ILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~-~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +|+.+..+++.+|++|+|+|.+++. ....|.||||.++   . ++..  +......++||.+..+.+++.++|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4778888999999999999999764 4568999999742   2 3332  222334578999987667778999999999


Q ss_pred             CCCCEEEEEeecCCC-----CeeEEEEeceec
Q psy14080         82 KRDNGTYECQAQPYT-----TTSHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~-----~~s~~~~L~V~g  108 (113)
                      ++|+|+|+|++...+     ..-....|.|+.
T Consensus        82 ~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V~~  113 (114)
T d3bp5a1          82 RNDSGIYLCGAISLHPKAKIEESPGAELVVTE  113 (114)
T ss_dssp             GGGCEEEEEEEECSSSSCCCEECCCEEEEEEC
T ss_pred             cCCCeEEEEEEEeCCCCcceEECcCeEEEEEE
Confidence            999999999986432     122344565553

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.80  E-value=3.3e-19  Score=111.08  Aligned_cols=85  Identities=16%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++|+|+|..+......++||||.+   +..+......  ....+||....  .++.++|+|+++++
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~   80 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLS   80 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CCCeeeecccCCcc
Confidence            46788888999999999999999877667899999974   2333332222  23467998763  45689999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (106)
T d1i8ka_          81 EDVGDYYCLQSF   92 (106)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCEEEeEecCc
Confidence            999999999854

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.80  E-value=3.6e-19  Score=110.85  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      |+|+.+..+++.+|++|+|+|..++.....+.||||.+   ++.+......  ....+||.+..  +++.+.|+|+++++
T Consensus         2 vltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~   79 (106)
T d1op3k1           2 VMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--SGTEFTLTISGLQF   79 (106)
T ss_dssp             CEEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCG
T ss_pred             eEeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--cCCEEEEEEccccc
Confidence            67888899999999999999999877777899999984   3444332222  12357998763  46789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        80 ~Dsa~YyCa~~~   91 (106)
T d1op3k1          80 DDFATYHCQHYA   91 (106)
T ss_dssp             GGCSEEEEEEEC
T ss_pred             cCCCcEeeeeCC
Confidence            999999999854

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.80  E-value=4.6e-19  Score=110.44  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++|+|+|..+......++||||.+   +.++.. .... ...+.||....  +.++++|+|.++++
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~   80 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCc
Confidence            46788888999999999999999877777899999984   233332 2111 12357998864  45789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1j1pl_          81 EDFGMYFCQQAN   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CCCEEEEEEcCC
Confidence            999999999853

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.79  E-value=7.8e-19  Score=109.26  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=66.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++++.+..+++.+|++|+|+|..+......+.||||.+   +..+.......  ...+||.+..  +.+.++|+|.++++
T Consensus         3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   80 (107)
T d1kcvl1           3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG--SATDFTLTISSVQA   80 (107)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec--cCCeeecEEHhhee
Confidence            45777888999999999999999877667899999974   33333322221  2467998764  45789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~DSa~YyCa~~~   92 (107)
T d1kcvl1          81 DDDADYYCGQSY   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEecC
Confidence            999999999854

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.79  E-value=3.6e-19  Score=111.03  Aligned_cols=85  Identities=19%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++|+|+|..+......++||||.+   +..|.......  ....||....  +++++.|+|+++++
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~   80 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SGTDFTLTINNVQS   80 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CCCeeeeeechhhe
Confidence            56788888999999999999998866666899999984   33333322222  2357998864  45789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~DsA~YyCa~~~   92 (107)
T d1mexl1          81 EDLAEYFCQQYN   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             ecceeEEEeECC
Confidence            999999999853

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.79  E-value=3.6e-19  Score=111.14  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+..+++.+|++|+|+|..+......+.||||.++   ..+......  ....+||....  ..++++|.|+++++
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   80 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SGSDYSLTISSLES   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cCCEEEEEEhhhcc
Confidence            456778889999999999999998777778999999843   223222211  23457888764  45689999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1c5cl1          81 EDFADYYCLQYA   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             cCCeEEEEecCc
Confidence            999999999854

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.79  E-value=3.1e-19  Score=110.03  Aligned_cols=102  Identities=14%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC--eEEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW--HILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~--~~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +|.+....++++++.+|++++|.|.+.+.+.+.|.|+|....  ..+..+.. ......+. .........+.|+|.+++
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA-GVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCE-EEEETTEEEEEEEECSCC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccc-eeEEecCCcEEEEECCCC
Confidence            345555567889999999999999999999999999996521  11111100 00111111 111233456799999999


Q ss_pred             CCCCEEEEEee-cCCCCeeEEEEecee
Q psy14080         82 KRDNGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        82 ~~D~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      .+|+|.|+|.+ +..+..+..++|.|+
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999 566888889999885

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.78  E-value=7.9e-19  Score=109.81  Aligned_cols=100  Identities=17%  Similarity=0.093  Sum_probs=71.7

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe---EEEe-cceEE-cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH---ILTS-GVLTY-TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~---~l~~-~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      |+++ +..+++.+|++|+|+|.+++..  ...++||||.++.   .+.. ..... ...+||....+..++.++|+|+++
T Consensus         3 vltQ-P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l   81 (111)
T d1cd0a_           3 MLNQ-PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGL   81 (111)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSC
T ss_pred             cEec-CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccC
Confidence            5666 5679999999999999997543  4579999998532   2222 11111 235799988777788999999999


Q ss_pred             CCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +++|+|+|+|+......  .=....|.|+|
T Consensus        82 ~~~Dsa~YyCA~~~~~~~~FG~GT~L~Vlg  111 (111)
T d1cd0a_          82 KTEDEADYYCQSYDARNVVFGGGTRLTVLG  111 (111)
T ss_dssp             CGGGCEEEEEEEEETTEEEEBCCEEEEECC
T ss_pred             CcccCcEEEEeeccCCCCEECCCeEEEECC
Confidence            99999999999853221  12345677765

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.78  E-value=3.8e-19  Score=111.70  Aligned_cols=85  Identities=11%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---C-eEEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---W-HILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~-~~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.++......|.|||+.+   . .++.. .......++||.+..+...+.++|+|++++++|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            455678899999999999999887778899999984   2 23332 111223467999876677889999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++..
T Consensus        84 sg~Y~Ca~~~   93 (114)
T d2cdea1          84 SASYICVVSD   93 (114)
T ss_dssp             CSEEEEEEEC
T ss_pred             Ccccceeeec
Confidence            9999999964

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=112.86  Aligned_cols=99  Identities=16%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCC---CCEEEEEecCCCeEEEecceEEcCCCCEEEEE----eCCCCcEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWHILTSGVLTYTNDARFQVIH----TDGSDDWNLQ   76 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~----~~~~~~~~L~   76 (113)
                      .|.+++...++++++.+|++|+|.|.+.+.+   .+.|.|||.+. ..+..     ....|+....    ......++|.
T Consensus         2 ~p~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~   75 (110)
T d2avga1           2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW-VDLSS-----KVGQHLQLHDSYDRASKVYLFELH   75 (110)
T ss_dssp             CTTCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTT-CCSTT-----TCSSSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCce-eeecc-----cCCceeEeeeeeEEecccCEEEEE
Confidence            4778888889999999999999999999877   57899998432 11111     1122333221    1122356899


Q ss_pred             EccCCCCCCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         77 IKFLQKRDNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.+++.+|+|.|.|.+ +..+..+..++|.|..
T Consensus        76 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          76 ITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EESCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             EeccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999 5678889999999975

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.5e-18  Score=107.90  Aligned_cols=85  Identities=20%  Similarity=0.176  Sum_probs=64.2

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      |+++- ..+++.+|++|+|+|..++.....++||||.+   +..|......  ....+||....  +++.++|+|+++++
T Consensus         3 vltQp-~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~   79 (106)
T d1lk3l1           3 VLTQP-PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEA   79 (106)
T ss_dssp             CEECC-SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             cEeeC-CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--CCCEEEeEECCcCh
Confidence            45554 46899999999999999877667899999974   3433332211  12467998874  45679999999999


Q ss_pred             CCCEEEEEeecCC
Q psy14080         83 RDNGTYECQAQPY   95 (113)
Q Consensus        83 ~D~G~Y~C~~~~~   95 (113)
                      +|+|+|+|+....
T Consensus        80 ~Dsa~YyCa~~~~   92 (106)
T d1lk3l1          80 DDTAIYFCQQSWN   92 (106)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             hhCCCcccccccC
Confidence            9999999988543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.78  E-value=1.2e-18  Score=109.36  Aligned_cols=86  Identities=14%  Similarity=0.111  Sum_probs=65.3

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccC-----CCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDI-----VKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      .++|+.+..+++.+|++|+|+|.+++.     ....|+||||.+   +..+......  .....||...  .+++.++|+
T Consensus         2 ivlTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~--~s~~~~~L~   79 (112)
T d1mjul1           2 IVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS--GSGTAFTLR   79 (112)
T ss_dssp             CCEECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--ECSSEEEEE
T ss_pred             CceEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee--cCCCEEEEE
Confidence            367888889999999999999998753     356899999984   3333332221  1235688876  456789999


Q ss_pred             EccCCCCCCEEEEEeecC
Q psy14080         77 IKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~   94 (113)
                      |++++++|+|+|+|+...
T Consensus        80 Is~~~~~DsAvYyCa~~~   97 (112)
T d1mjul1          80 ISRVEAEDVGVYYCLQHL   97 (112)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             ECCccccCCceEEEEeCC
Confidence            999999999999998754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.78  E-value=1.1e-18  Score=108.57  Aligned_cols=85  Identities=19%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +|+.+..+++.+|++|+|.|..+......+.||||.++   ..+......  ....+||.+..  +++.++|+|++++++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG--SGRDYSFSISNLEPE   80 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec--CCCEeeeEehhhccc
Confidence            46778889999999999999998776668999999842   233222221  12367998864  457899999999999


Q ss_pred             CCEEEEEeecCC
Q psy14080         84 DNGTYECQAQPY   95 (113)
Q Consensus        84 D~G~Y~C~~~~~   95 (113)
                      |+|+|+|+....
T Consensus        81 DsA~YyCa~~~~   92 (106)
T d1a0ql1          81 DIATYYCLQYYN   92 (106)
T ss_dssp             GCSEEEEEECSS
T ss_pred             CCEeEEEEEeCC
Confidence            999999998643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.78  E-value=2.5e-18  Score=107.29  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ...+++.+..+++.+|++|+|+|..++.....++||||.+   +..|......  ...+.||.+..  +++.++|+|+++
T Consensus         3 d~~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~l   80 (109)
T d1bwwa_           3 DIQMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG--SGTDYTFTISSL   80 (109)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             CEeEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC--CCCEeEEEEeec
Confidence            3456778888999999999999999877677899999984   3444332221  23468998864  456789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+...
T Consensus        81 ~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          81 QPEDIATYYCQQYQ   94 (109)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eeCcCceEEEeecC
Confidence            99999999999854

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.77  E-value=1.1e-18  Score=108.14  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++|+|+|..+. ....++||||.+   +..+.......  ....||....  +++.++|+|.++++
T Consensus         2 vvtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~   78 (104)
T d1yqvl1           2 VLTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMET   78 (104)
T ss_dssp             CEEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             EEeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCc
Confidence            5788899999999999999999764 345689999984   33343332222  2356887763  45789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        79 ~Dsa~YyCa~~~   90 (104)
T d1yqvl1          79 EDAATYYCQQWG   90 (104)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCCeEEEEecC
Confidence            999999999853

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=108.93  Aligned_cols=87  Identities=18%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEEEe-cce-E-E--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHILTS-GVL-T-Y--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l~~-~~~-~-~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .++....+++.+|++|+|+|.++.. ....++||||.+   +..|.. ... . .  ...+||.+..+..+..++|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3566777899999999999998754 456899999874   233322 111 1 1  23579998876677789999999


Q ss_pred             CCCCCCEEEEEeecCC
Q psy14080         80 LQKRDNGTYECQAQPY   95 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~   95 (113)
                      ++++|+|+|+|++...
T Consensus        83 ~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          83 VRTEDSATYYCAFTLP   98 (116)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             ccccccccceeeEecC
Confidence            9999999999998643

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.77  E-value=1.7e-18  Score=105.35  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             CCcEEEEEEEccCCCCEEEEEecCC---CeE-EEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIVKVRVSWVRRRD---WHI-LTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~~~~V~W~k~~~---~~~-l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      |++|+|+|.++......|+||||.+   ++. +.........++||....+.+.+.++|+|++++++|+|+|+|++..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            7999999999988888999999984   233 3333333345689998777777889999999999999999999864

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.77  E-value=2.2e-18  Score=108.02  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++...+.++||||..+   . ++.. ........+|+.......++.++|+|++++++|
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            5566778999999999999998877778999999842   2 2222 222223356887776677889999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|++.
T Consensus        84 sg~YyCa~~   92 (113)
T d2bnqd1          84 SATYLCAVR   92 (113)
T ss_dssp             CEEEEEEEE
T ss_pred             CcEEeEeEe
Confidence            999999995

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-18  Score=104.09  Aligned_cols=88  Identities=17%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .+.++++.+|+++.|.|.+.+.+.+.|.|+|.  +..+.       ...++.+........++|.|.+++.+|+|.|+|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~--g~~l~-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   72 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--GAVVQ-------NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ   72 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEET--TEECC-------SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEe--ecccc-------cceeeeeeecccCceeeEEECCCCcccCEEEEEE
Confidence            35678899999999999999999999999984  33332       2334444333344567899999999999999999


Q ss_pred             ec-CCCC-eeEEEEeceec
Q psy14080         92 AQ-PYTT-TSHSQNAPGLG  108 (113)
Q Consensus        92 ~~-~~~~-~s~~~~L~V~g  108 (113)
                      +. ..+. .|..++|.|+|
T Consensus        73 a~N~~G~~~S~~~~l~V~G   91 (91)
T d1rhfa1          73 VEDGGETEISQPVWLTVEG   91 (91)
T ss_dssp             ESSCTTCEECCCEEEEEEC
T ss_pred             EEECCCCEEEEEEEEEEEC
Confidence            95 4454 57889999987

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.77  E-value=2.8e-18  Score=107.26  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++|+.+..+++.+|++|+|+|..+......++||||.+   +..|.......  ....||....  +++.++|.|+++++
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~   80 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLP   80 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccc
Confidence            46788888999999999999999876667899999984   33333222222  2357998764  46789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~DSa~YyCA~~~   92 (109)
T d1mqkl_          81 EDFGSYYCQHHY   92 (109)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCeeEEEeeeC
Confidence            999999999853

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.77  E-value=3.6e-18  Score=106.41  Aligned_cols=85  Identities=18%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEec-ceE-EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSG-VLT-YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~-~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+|+.+..+++.+|++|+|+|..+......++||||.+   +..+... ... -...+||....  ++..++|+|.++++
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~   80 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SGQDYSLTISSLEY   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cCCEEEccccccCC
Confidence            45677788999999999999999877777899999984   2333322 211 12357998764  35678999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1d5il1          81 EDMGIYYCLQYD   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCEEEEeeecc
Confidence            999999999854

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=108.35  Aligned_cols=98  Identities=17%  Similarity=0.079  Sum_probs=68.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++++- ..+++.+|++|+|+|+++..  ....|+||||.+   +..|.....  .....+||....  +++.++|+|+++
T Consensus         3 vltQp-~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~   79 (111)
T d1rzfl1           3 ILTQP-PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGL   79 (111)
T ss_dssp             SBBCC-SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             ceeeC-cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeee
Confidence            44553 47899999999999998754  356799999974   334433221  122357898864  456899999999


Q ss_pred             CCCCCEEEEEeecCCCC--e--eEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYTT--T--SHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~--~--s~~~~L~V~g  108 (113)
                      +++|+|+|+|+......  .  =.-..|.|+|
T Consensus        80 ~~~Dsa~YyCA~~~~~~~~~~FG~GT~ltVlg  111 (111)
T d1rzfl1          80 QTGDEADYYCGTWDSSLSAVVFGGGSKVTVLG  111 (111)
T ss_dssp             CGGGCSEEEEEEEETTTTEEEEBCCEEEEETT
T ss_pred             ccccCcceEEeecCCCCCCCEECCCeEEEECC
Confidence            99999999999853221  1  1334677765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.7e-19  Score=107.70  Aligned_cols=89  Identities=16%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEE-----cCCCCEEEEEe-CCCCcEEEEEccCCCCCCEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTY-----TNDARFQVIHT-DGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~-----~~~~R~~~~~~-~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      .|++.+|++|+|+|.++......+.|||+.+..++.......     ...+|+....+ .+.++++|+|++++++|+|+|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            477889999999999988777899999987655544322211     11357665422 234678999999999999999


Q ss_pred             EEeecCCCCeeEEEEece
Q psy14080         89 ECQAQPYTTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~~~~~~s~~~~L~V  106 (113)
                      +|++..   .+..+.|.|
T Consensus        83 ~C~v~~---~~~~v~L~V   97 (97)
T d2nxyb1          83 ICEVED---QKEEVQLLV   97 (97)
T ss_dssp             EEEETT---EEEEEEEEE
T ss_pred             EEEEec---CCeEEEEEC
Confidence            999964   345677765

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.9e-18  Score=108.35  Aligned_cols=98  Identities=17%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCC---CCEEEEEecCCC---eEEEecceEE--cCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDW---HILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~---~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      ++++. ..+++.+|++|+|+|.++...   ...|+||||.++   ..|.......  ...+||....+  ++.++|+|++
T Consensus         3 ~~tQ~-~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~--~~~~~L~I~~   79 (110)
T d1oaql_           3 VVTQE-SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI--GNKAALTITG   79 (110)
T ss_dssp             CEEEC-SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE--TTEEEEEEES
T ss_pred             CEeeC-CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc--ccceeeecCC
Confidence            34553 368899999999999997432   345999999853   3333332222  23579998753  4689999999


Q ss_pred             CCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         80 LQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      ++++|+|+|+|+......  .-....|.|+|
T Consensus        80 ~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVlg  110 (110)
T d1oaql_          80 AQTEDEAIYFCALWYSNHLVFGGGTKLTVLG  110 (110)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             CCccccEeEEEEcccCCCCEECCCeEEEECC
Confidence            999999999999853221  22344667765

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=99.76  E-value=8.1e-19  Score=109.87  Aligned_cols=98  Identities=16%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      |+++- ..+++.+|++|+|+|..++.....++||||.+   +..|.......  ...+||....  ++..++|.|+++++
T Consensus         3 VltQp-~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   79 (109)
T d1w72l1           3 VLTQP-PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN--SGNMATLTISRVEA   79 (109)
T ss_dssp             CCBCC-SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             ceeeC-CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec--CCCccceEEeeecc
Confidence            45554 46899999999999998776667899999985   33343322211  2357887764  46789999999999


Q ss_pred             CCCEEEEEeecCCCC----eeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYTT----TSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~----~s~~~~L~V~g  108 (113)
                      +|+|+|+|+......    .=....|.|+|
T Consensus        80 ~DsavYyCA~~~~~~~~~~FG~GTkLtVlg  109 (109)
T d1w72l1          80 GDEADYYCQVWDSRTDHWVFGGGTDLTVLG  109 (109)
T ss_dssp             GGCEEEEEEEEETTTTEEEECCCEEEEECC
T ss_pred             CCCEEEEEEecCCCCCCcEECCCeEEEECC
Confidence            999999999853211    12345666665

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=107.99  Aligned_cols=86  Identities=19%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .++|+.+..+++.+|++|+|+|.++.. ....++||||.+   +..|..+...  ....+||....  +++.++|+|+++
T Consensus         2 ivltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~L~I~~~   79 (108)
T d2fx7l1           2 IVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--SGTDFTLTISRL   79 (108)
T ss_dssp             CCEECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSC
T ss_pred             cCEEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--CCCEEEEEehHh
Confidence            357788888999999999999998754 456799999984   3444432221  22357898764  456799999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+...
T Consensus        80 ~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          80 EPEDFAVYYCQQYG   93 (108)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             eecccEEEeeecCC
Confidence            99999999999853

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.76  E-value=2.5e-18  Score=107.08  Aligned_cols=84  Identities=19%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecce-E-EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVL-T-YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~-~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++.+..+++.+|++|+|+|..+......+.||||..   +..|..... . .....||....  +++.++|+|.+++++
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG--SGTEFTLTISTLRPE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec--cCCEEEEEeccceeC
Confidence            4677888999999999999999877677999999984   333433222 1 22457888763  467899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999999753

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.76  E-value=1.6e-18  Score=109.08  Aligned_cols=86  Identities=15%  Similarity=0.077  Sum_probs=66.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEec--ceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++....+++.+|++|+|.|.++......+.||||.+   +..+...  ........||.+..++.++.++|+|++++++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            3556677899999999999999887778899999974   3343321  1112235788887666677889999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|++..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1lp9e1          84 DSALYYCALFL   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCccceEEEEc
Confidence            99999999853

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.76  E-value=5.9e-18  Score=105.70  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-e-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-S-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|.|.+++.....+.||||.+   +..|. . .......++||....+..++.++|.|++++++|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            455667889999999999999887777899999984   23332 2 111122357998887788889999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|+...
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999999864

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-18  Score=107.25  Aligned_cols=100  Identities=14%  Similarity=0.071  Sum_probs=72.1

Q ss_pred             cceEEEecCCcEEEEEEEccCC---CCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+++.+|++|+|+|.+....   ...+.|||+...   ..+......  ....+|+.+..+..+++++|+|++++++|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            4568899999999999986432   356899998742   233222111  12357888877788889999999999999


Q ss_pred             CEEEEEeecCCC-CeeEEEEeceeccccc
Q psy14080         85 NGTYECQAQPYT-TTSHSQNAPGLGDLLM  112 (113)
Q Consensus        85 ~G~Y~C~~~~~~-~~s~~~~L~V~g~~~~  112 (113)
                      +|+|+|.+...+ .....++|.|.+...-
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~~~~~~  114 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEVLEHHHH  114 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEECCCCC
T ss_pred             CEEEEEEEEcCCCCceEeEEEEEECCCcc
Confidence            999999996433 3456789999987653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=108.31  Aligned_cols=86  Identities=12%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEE-ec--ceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILT-SG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~-~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .++.+..+++.+|++|+|+|.++......|+||||.+   +.+|. ..  .......+|+..........++|+|+++++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            4667788999999999999999887777899999984   33332 21  112233467777655566788999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        83 ~Dsa~YyCa~~~   94 (115)
T d1j8hd1          83 SDAAEYFCAVSE   94 (115)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cCCccceeeecC
Confidence            999999999964

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=1.4e-17  Score=102.00  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +....+++++.+|+++.|.|.+.+.+.+.|.|||.  +..+       ..++|+.+.. ...+.++|.|.+++.+|+|.|
T Consensus        11 f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~--~~~i-------~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y   80 (102)
T d1fhga_          11 FTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD--DNPV-------KESRHFQIDY-DEEGNCSLTISEVCGDDDAKY   80 (102)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET--TEEC-------CCSSSEEEEE-CTTCEEEEEESSCCGGGCEEE
T ss_pred             EEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEee--eccc-------cceeeEeEEE-ecCceeeeEecCCCHHhCEEE
Confidence            34556778999999999999999999999999984  3333       2467787754 345678999999999999999


Q ss_pred             EEee-cCCCCeeEEEEeceec
Q psy14080         89 ECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        89 ~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      .|.+ +..+..+..++|.|+.
T Consensus        81 ~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          81 TCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCcEEEEEEEEEEEE
Confidence            9999 5667888889998863

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.9e-18  Score=109.02  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC------e-EEEecc----eEEc----CCCCEEEEEeCCCCcE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW------H-ILTSGV----LTYT----NDARFQVIHTDGSDDW   73 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~------~-~l~~~~----~~~~----~~~R~~~~~~~~~~~~   73 (113)
                      +.+.++.+++.+|++|+|.|.+.+...+.|+||||.++      . ++....    ..+.    ...||.... .+++.+
T Consensus         4 ~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~   82 (122)
T d1nezg_           4 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR-DTNNKY   82 (122)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEE-ETTTEE
T ss_pred             eEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEEC-CCCCEe
Confidence            45667888999999999999998887788999998732      2 232211    1121    235887764 455679


Q ss_pred             EEEEccCCCCCCEEEEEeecCCCC--eeEEEEeceec
Q psy14080         74 NLQIKFLQKRDNGTYECQAQPYTT--TSHSQNAPGLG  108 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~~--~s~~~~L~V~g  108 (113)
                      +|+|++++++|+|+|+|++.....  ......|.++|
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~~~~~l~Fg~Gt~v~~~~  119 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKV  119 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             EEEEcccccCCCEEEEeeEeCCCCcEECCCeEEEEee
Confidence            999999999999999999964332  23334444444

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=1.2e-17  Score=101.63  Aligned_cols=89  Identities=12%  Similarity=-0.055  Sum_probs=70.3

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ...+++++.+|++++|.|.+.+.+.+.|.|||.  +..+       ..++|+..... ..+..+|+|.+++.+|+|.|.|
T Consensus         9 ~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~--~~~i-------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~c   78 (98)
T d1g1ca_           9 ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN--GVKI-------ERSDRIYWYWP-EDNVCELVIRDVTGEDSASIMV   78 (98)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEET--TEEC-------CCCSSEEEEEE-ETTEEEEEECSCCGGGCEEEEE
T ss_pred             cCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeC--ceEE-------eeeeeeEEEec-cceEEEEEeccCccccCEEEEE
Confidence            344678999999999999999999999999983  3333       23456554322 2456799999999999999999


Q ss_pred             ee-cCCCCeeEEEEeceecc
Q psy14080         91 QA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        91 ~~-~~~~~~s~~~~L~V~g~  109 (113)
                      .+ +..+..+..+.|.|.++
T Consensus        79 ~a~N~~G~~~~~~~L~V~~k   98 (98)
T d1g1ca_          79 KAINIAGETSSHAFLLVQAK   98 (98)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEEECCcEEEEEEEEEEEEC
Confidence            99 56678888899999864

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.75  E-value=1e-17  Score=104.60  Aligned_cols=84  Identities=18%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe-cceE-EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS-GVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~-~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|..++.....++||||.++   ..|.. .... .....+|...  .+++.++|+|.+++++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~l~~~   81 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS--GSGTDFTLTISSLEPE   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--ESSSEEEEEECSCCTT
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc--CCCCEEEeEeeeeEec
Confidence            46777889999999999999998776778999999842   23322 2211 1235677765  4567899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        82 Dsa~YyCA~~~   92 (108)
T d1jhll_          82 DFAMYICQQHN   92 (108)
T ss_dssp             CCSEEEEEECS
T ss_pred             cceEEEEeeCC
Confidence            99999999753

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.75  E-value=3.4e-18  Score=106.28  Aligned_cols=84  Identities=20%  Similarity=0.179  Sum_probs=63.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-c-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-G-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.++......++||||.+   +..+.. . ........|+....+..++.++|+|++++++|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            344567889999999999999877667899999974   233222 1 11122346777766666778999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        83 sa~YyCa~~   91 (110)
T d1u3ha1          83 SATYFCAAS   91 (110)
T ss_dssp             CSEEEECCE
T ss_pred             ceeEeeeec
Confidence            999999985

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=107.62  Aligned_cols=99  Identities=19%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEEEe-cce-EEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHILTS-GVL-TYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l~~-~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      |+++-+ .+++.+|++|+|+|.+++.  ....++||||.+   +.+|.. +.. .....+||....  +++.++|.|.++
T Consensus         3 vltQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v   79 (114)
T d2rhea_           3 VLTQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGL   79 (114)
T ss_dssp             SSBCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             ccccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEeccc
Confidence            455554 6899999999999998754  357899999984   334433 211 112357998864  457899999999


Q ss_pred             CCCCCEEEEEeecCCCC----eeEEEEeceecc
Q psy14080         81 QKRDNGTYECQAQPYTT----TSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~----~s~~~~L~V~g~  109 (113)
                      +++|+|+|+|+......    .=....|.|+|.
T Consensus        80 ~~~DsA~YyCA~~~~~~~~~~FG~GT~LtVlg~  112 (114)
T d2rhea_          80 ESEDEADYYCAAWNDSLDEPGFGGGTKLTVLGQ  112 (114)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEECCCEEEEECSC
T ss_pred             CcccCceEEEeecCCCCCCCEECCCeEEEECCC
Confidence            99999999999853211    124457788773

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.74  E-value=1.4e-18  Score=108.29  Aligned_cols=85  Identities=19%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+..+++.+|++|+|+|..+......++||||.++   ..|......  .....||....  +++.++|+|+++++
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~   80 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG--SGTDYSLTISNLEP   80 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE--ETTEEEEECSCCCS
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc--cCCEEEEEEeEeee
Confidence            456777888999999999999998777778999999842   333332221  22357888764  45689999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|+...
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d3cx5k1          81 EDIATYFCQHHI   92 (107)
T ss_dssp             CCCSEEEEEECS
T ss_pred             cCCCcEEeeeCC
Confidence            999999999853

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=99.74  E-value=1.1e-17  Score=104.74  Aligned_cols=85  Identities=16%  Similarity=0.097  Sum_probs=63.6

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC----CCCEEEEEecCC---CeE-EEecceE-EcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRD---WHI-LTSGVLT-YTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~---~~~-l~~~~~~-~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ++|+.+..+++.+|++|+|+|.++..    ....++||||.+   +.. +...... ...++||....  .++.++|+|+
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~~~~~~L~I~   80 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--SGTDFTLNIH   80 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--CCCchhcccc
Confidence            56788888999999999999998642    234699999984   233 3322221 12357998764  4578999999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++++|+|+|+|+...
T Consensus        81 ~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          81 PVEEEDAATYYCSHIR   96 (111)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             cccccCCceEEEEECC
Confidence            9999999999999853

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.74  E-value=1.1e-17  Score=105.09  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccC-----CCCEEEEEecCCC---eEEEec-ceE-EcCCCCEEEEEeCCCCcEEEE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDI-----VKVRVSWVRRRDW---HILTSG-VLT-YTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~~---~~l~~~-~~~-~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      .++|+.+..+++.+|++|+|+|+++..     ....++||||.++   ..|... ... ....+||....  .++++.|+
T Consensus         2 i~lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~--~~~~~~L~   79 (112)
T d1ncwl1           2 VVMTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG--SGTDFTLK   79 (112)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEE
T ss_pred             CcEeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC--CCCEEEEE
Confidence            357888888999999999999997643     2457999999853   333332 221 12357998763  45789999


Q ss_pred             EccCCCCCCEEEEEeec
Q psy14080         77 IKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~   93 (113)
                      |++++++|+|+|+|+..
T Consensus        80 I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          80 ISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ECccccCcCEeEEEEcC
Confidence            99999999999999874

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=105.71  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCC---CeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRD---WHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~---~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +++..+.+++.+|++++|+|.+++..  .+.++||||.+   +..|........  ..+||.+..+..++.++|+|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34566678999999999999998543  56899999973   344444333222  247999887666678999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|+...
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999999864

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=99.74  E-value=9.7e-18  Score=104.97  Aligned_cols=85  Identities=18%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC----CCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ++|+.+..+++.+|++|+|.|.++..    ....+.||||.+   +..|......  .....||...  .++..++|.|+
T Consensus         3 ~ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~--~~~~~~~L~I~   80 (111)
T d1j05a_           3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT--GSRTDFTLIID   80 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSEEEEEES
T ss_pred             CEEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe--cCCCEEEEEEc
Confidence            45777888999999999999998642    344699999974   3333332222  2235688775  56688999999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++++|+|+|+|+...
T Consensus        81 ~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          81 PVEADDVATYYCQQTN   96 (111)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccccCccEEEeecC
Confidence            9999999999999854

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-17  Score=103.22  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             cceEEEecCCcEEEEEEEccCC--CCEEEEEecCCC---eEE-Ee-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDW---HIL-TS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~---~~l-~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ++.+++.+|++|+|+|.++...  ...+.|||+.+.   ..+ .. +.......+|+.+..+.+++.++|+|++++++|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            4668899999999999987543  346899998642   222 22 2212234578888777788899999999999999


Q ss_pred             EEEEEeecC
Q psy14080         86 GTYECQAQP   94 (113)
Q Consensus        86 G~Y~C~~~~   94 (113)
                      |+|+|++..
T Consensus        83 G~Y~C~v~~   91 (108)
T d1hkfa_          83 GHYWCRIYR   91 (108)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999999954

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=99.74  E-value=6.4e-18  Score=105.80  Aligned_cols=97  Identities=21%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC---CCCEEEEEecCCC---eEEEec-c-eEEcCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRDW---HILTSG-V-LTYTNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~~---~~l~~~-~-~~~~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      +|+ +..+++.+|++|+|+|.+++.   ....++||||.++   ..+... . ......+||....  .++.++|+|+++
T Consensus         4 ltQ-P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l   80 (112)
T d1lgva1           4 LTQ-PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGL   80 (112)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSC
T ss_pred             ccC-CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcC
Confidence            344 567899999999999998754   3357999999852   333221 1 1123457888764  456899999999


Q ss_pred             CCCCCEEEEEeecCCCC--e--eEEEEeceec
Q psy14080         81 QKRDNGTYECQAQPYTT--T--SHSQNAPGLG  108 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~~~~--~--s~~~~L~V~g  108 (113)
                      +++|+|+|+|+......  .  =.-..|.|+|
T Consensus        81 ~~~Dsa~YyCa~~~~~~~~~~FG~GTkLtVlg  112 (112)
T d1lgva1          81 QAEDEADYYCSSYDGSSTSVVFGGGTKLTVLG  112 (112)
T ss_dssp             CGGGCEEEEEEEECSSSSSEEEBCCEEEEECC
T ss_pred             ccccCEEEEEeeecCCCCCCEeCcCEEEEECC
Confidence            99999999999853221  1  1334666765

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.74  E-value=8.5e-18  Score=104.93  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             cceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +..+++.+|++|+|+|.++.. ....++||||.+   +..|...........|+......+++.++|.|++++++|+|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            456899999999999998764 345799999974   2333322111112344444445677899999999999999999


Q ss_pred             EEeec
Q psy14080         89 ECQAQ   93 (113)
Q Consensus        89 ~C~~~   93 (113)
                      +|++.
T Consensus        85 yCa~~   89 (110)
T d2esvd1          85 YCIVV   89 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99984

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=4.6e-18  Score=102.60  Aligned_cols=92  Identities=11%  Similarity=-0.010  Sum_probs=73.0

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +||.|.+.. +++++.+|+++.|.|.+.+.|.+.|.|+|.+ ..+        ..+.|+.+..  ..+..+|.|++++.+
T Consensus         1 l~P~i~~~~-~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~-~~i--------~~~~~~~~~~--~~~~~~L~I~~~~~~   68 (93)
T d1wiua_           1 LKPKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTVGD-SGA--------ALAPELLVDA--KSSTTSIFFPSAKRA   68 (93)
T ss_dssp             CCCEECCCC-CEEEECSSBCCEEEEEEECCSSCEEEEECSS-SSC--------BCSTTSEEEE--ETTEEEEECTTBCGG
T ss_pred             CCCeEEeCC-CcEEEeCCCeEEEEEEEEEecCCeEEEEeee-eec--------eeeeeeeecc--cccceeecccccccc
Confidence            356666654 6789999999999999999999999999843 211        2356776653  245779999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEecee
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      |+|.|.|.+ +..+..+..+.|.|+
T Consensus        69 D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          69 DSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccEEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999 566788888998874

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.73  E-value=5.5e-18  Score=106.23  Aligned_cols=85  Identities=11%  Similarity=0.071  Sum_probs=63.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCC---e-EEEecc--eEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDW---H-ILTSGV--LTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~---~-~l~~~~--~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++....+++.+|++|+|+|.++.. ..+.++||||.++   . ++....  ......+||.+..++.++.++|+|+++++
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            456677899999999999998754 4567999999842   2 232211  11122468888766667789999999999


Q ss_pred             CCCEEEEEeecC
Q psy14080         83 RDNGTYECQAQP   94 (113)
Q Consensus        83 ~D~G~Y~C~~~~   94 (113)
                      +|+|+|+|++..
T Consensus        83 ~Dsa~YyCa~~~   94 (115)
T d1fo0a_          83 EDSAVYFCAMRG   94 (115)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cccccccceeec
Confidence            999999999853

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.73  E-value=1.7e-17  Score=100.98  Aligned_cols=91  Identities=10%  Similarity=0.043  Sum_probs=67.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +......++++.+|+++.|.|.+.+.|.+.|.|||.  +..+..+     ...++...  ......+|.|.+++.+|+|.
T Consensus         5 ~p~~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~--g~~i~~~-----~~~~~~~~--~~~~~~~L~I~~~~~~D~G~   75 (97)
T d1biha3           5 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN--GKDVNGN-----PEDRITRH--NRTSGKRLLFKTTLPEDEGV   75 (97)
T ss_dssp             EEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEET--TEECCCC-----TTSSEESC--SSSTTSEEEESSCCGGGCEE
T ss_pred             CCeeCCCCEEEecCCeEEEEEEEEEecCCEEEEEEe--eeecccc-----ceeeeeee--eecCCCEEEEEeccccccEE
Confidence            445567889999999999999999999899999984  3333211     12233322  23345699999999999999


Q ss_pred             EEEeec-CCCC-eeEEEEecee
Q psy14080         88 YECQAQ-PYTT-TSHSQNAPGL  107 (113)
Q Consensus        88 Y~C~~~-~~~~-~s~~~~L~V~  107 (113)
                      |.|.+. ..+. .+..++|.|+
T Consensus        76 Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          76 YTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEEEEECCCcEEEEEEEEEEC
Confidence            999995 4454 4678899885

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8e-19  Score=109.29  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=68.8

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCC---CCEEEEEecCCCeEEEecceEEcCCCCEEEEE--e--CCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWHILTSGVLTYTNDARFQVIH--T--DGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~--~--~~~~~~~L~I~~v~   81 (113)
                      +....+++++.+|++|+|.|.+.+.+   .+.|.|||.+.. .+..     ....|+.+..  .  .....++|.|.+++
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   76 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM-DLAS-----KAGKHLQLKETFERHSRVYTFEMQIIKAK   76 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC-CHHH-----HTTSSEEEEEEEETTTTEEEEEEEECSCC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecc-cccc-----ccceeeeeccceeeEeecCEEEEEEccCC
Confidence            44567789999999999999999876   579999985421 1110     1223343321  1  12235689999999


Q ss_pred             CCCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         82 KRDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      .+|+|.|+|.+ +..+..+..++|.|.+.
T Consensus        77 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          77 DNFAGNYRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             TTSCEEEEEEEECSSCEEEECCEEEEECC
T ss_pred             HHHCeEEEEEEEeCCCEEEEEEEEEEEcC
Confidence            99999999999 45688888999999765

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.73  E-value=1.7e-17  Score=104.11  Aligned_cols=101  Identities=11%  Similarity=0.052  Sum_probs=69.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .++....+++.+|++|+|+|.++......+.||||.++   . ++..  +........|+........+.++|+|+++++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            34556678999999999999998776778999999742   3 3322  1111222345555444667789999999999


Q ss_pred             CCCEEEEEeecCCCC---eeEEEEeceecc
Q psy14080         83 RDNGTYECQAQPYTT---TSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~~---~s~~~~L~V~g~  109 (113)
                      +|+|+|+|++.....   .-....|.|+-+
T Consensus        83 ~Dsg~YyCa~~~~~~~~~FG~GT~L~V~p~  112 (115)
T d1i9ea_          83 SDSAVYFCAVSGFASALTFGSGTKVIVLPY  112 (115)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEEECC
T ss_pred             cccceecccccCCCCCCEECCCEEEEEecC
Confidence            999999999853221   123456777654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.73  E-value=3.1e-17  Score=102.81  Aligned_cols=87  Identities=15%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEE-E---ec---ceEEc---CCCCEEEEEeCCCCcEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHIL-T---SG---VLTYT---NDARFQVIHTDGSDDWNL   75 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l-~---~~---~~~~~---~~~R~~~~~~~~~~~~~L   75 (113)
                      .+.+..+++.+|++|+|+|.+++. ....|+|||+.+   +..| .   ..   ...+.   ...||....+.+.+.++|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            355667889999999999999874 456899999963   3322 1   11   11111   246888776677788999


Q ss_pred             EEccCCCCCCEEEEEeecCCC
Q psy14080         76 QIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      +|.+++++|+|+|+|++...+
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~~~  102 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVGSP  102 (115)
T ss_dssp             EECSCCGGGCEEEEEEEECSS
T ss_pred             eecccCCCCCcEEEEeEcCCC
Confidence            999999999999999996433

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.2e-18  Score=104.52  Aligned_cols=97  Identities=15%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             CCceeeEee-cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          4 APGGILTAF-GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         4 ~p~~i~~~~-~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +|+.|.... ..++++.+|+++.|.|.+.+.|.+.|.|+|.  +..+....   ....+...    ..+..+|.|.+++.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~--g~~i~~~~---~~~~~~~~----~~~~~~L~I~~v~~   72 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD--GEPIENEE---EDDEKHIF----SDDSSELTIRNVDK   72 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEET--TEECCCC-----CCSSEEE----CTTSCEEEECSCCG
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeC--Cccccccc---ccceeEEe----ecCceEEEeCCCCc
Confidence            577777643 3457788999999999999999999999984  33332110   01122222    22456999999999


Q ss_pred             CCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         83 RDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +|+|.|.|.+ +..+..+..++|.|+.+
T Consensus        73 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~K  100 (100)
T d1qz1a3          73 NDEAEYVCIAENKAGEQDASIHLKVFAK  100 (100)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ccCEEEEEEEEECCCEEEEEEEEEEEEC
Confidence            9999999999 56678888999999864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.73  E-value=6.6e-18  Score=102.64  Aligned_cols=89  Identities=15%  Similarity=0.068  Sum_probs=71.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      +...+++++.+|+++.|.|.+.+.+.+.|.|+|.  +..|       ..+.||.+.  .+.+.++|.|.+++.+|+|.|.
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~--~~~l-------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~   73 (97)
T d1koaa1           5 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD--DREL-------KQSVKYMKR--YNGNDYGLTINRVKGDDKGEYT   73 (97)
T ss_dssp             EECCCCCEEETTSCEEEEEEEECSSCCEEEEEET--TEEC-------CSBTTBBCC--CSTTEEEEEESCCCSGGGSCEE
T ss_pred             EEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEe--eecc-------ceeeEEEEE--ecCCeeEEEeCCCceecCEEEE
Confidence            3446778999999999999999999999999984  3333       235677654  3456789999999999999999


Q ss_pred             Eee-cCCCCeeEEEEeceecc
Q psy14080         90 CQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |.+ +..+..+..++|.|.+.
T Consensus        74 C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          74 VRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEETTEEEEEEECCEEECS
T ss_pred             EEEEECCCEEEEEEEEEEeec
Confidence            999 56678888899999764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.73  E-value=2.8e-17  Score=103.24  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC-----CCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI-----VKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~-----~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++++.+..+++.+|++|+|+|.+++.     ....++||||.+   +..|......  ....+||....  +++.++|+|
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I   81 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI   81 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEE
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCcc
Confidence            46777888999999999999998743     236799999984   3344332221  12367998863  567899999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      ++++++|+|+|+|+...
T Consensus        82 ~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          82 SRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             SSCCGGGCEEEEEEECS
T ss_pred             CCCCcccCEEEEEEECC
Confidence            99999999999998753

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-17  Score=100.84  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=71.2

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      ...+++++.+|+++.|.|.+.+.+.+.|.|+|.+ . .+       ..++|+.+..  ..+..+|.|.+++.+|+|.|.|
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~-~-~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C   73 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFR-K-QI-------QESEHMKVEN--SENGSKLTILAARQEHCGCYTL   73 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESS-S-BC-------CCSSSEEEEE--CSSEEEEEETTCCTTTCEEEEE
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCc-e-ee-------ccCCcEEEEE--ecceeEEEEeeCCcccCEEEEE
Confidence            3456788999999999999999999999999843 2 22       2467887763  3456789999999999999999


Q ss_pred             ee-cCCCCeeEEEEeceecc
Q psy14080         91 QA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        91 ~~-~~~~~~s~~~~L~V~g~  109 (113)
                      .+ +..+..+..++|.|++.
T Consensus        74 ~a~N~~G~~~~~~~l~V~~~   93 (101)
T d2cqva1          74 LVENKLGSRQAQVNLTVVDK   93 (101)
T ss_dssp             EEECSSCEEECCEEEEEECS
T ss_pred             EEEECCCEEEEEEEEEEEec
Confidence            99 45678888899999863

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.7e-18  Score=106.79  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=75.9

Q ss_pred             CCceee----EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC-----e--EEEe-------------cceEEcCC
Q psy14080          4 APGGIL----TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW-----H--ILTS-------------GVLTYTND   59 (113)
Q Consensus         4 ~p~~i~----~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~-----~--~l~~-------------~~~~~~~~   59 (113)
                      +|+.|.    ......+++.+|++++|.|.+++.+.+.|.|+|....     .  ....             +.......
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            577763    3566789999999999999999999999999986421     0  0000             00001224


Q ss_pred             CCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-cCCCCeeEEEEeceec
Q psy14080         60 ARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        60 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g  108 (113)
                      .|+.+..  ..+..+|.|.+++.+|+|.|.|.+ +..+..+..+.|.|+.
T Consensus        83 ~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          83 GRVRVET--TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSCEEEE--ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ceEEEEE--CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            5777653  346789999999999999999999 5668888999999863

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.3e-18  Score=108.04  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=71.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+++.+..+++.+|++|+|+|..++.....++||||.+   +..|......  .....||....  +++.++|.|+++++
T Consensus         3 ~ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~   80 (119)
T d1f3rb2           3 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQP   80 (119)
T ss_dssp             CSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCG
T ss_pred             cEEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC--CCCEEEEEcccCcc
Confidence            45677778899999999999998876667899999984   3444332222  22357888763  45679999999999


Q ss_pred             CCCEEEEEeecCCC-CeeEEEEeceec
Q psy14080         83 RDNGTYECQAQPYT-TTSHSQNAPGLG  108 (113)
Q Consensus        83 ~D~G~Y~C~~~~~~-~~s~~~~L~V~g  108 (113)
                      +|+|+|+|+....+ ..-....|.|++
T Consensus        81 ~DsavYyCa~~~~~~~FG~GT~LtV~~  107 (119)
T d1f3rb2          81 EDVATYFCYQYNNGYTFGAGTKLELKA  107 (119)
T ss_dssp             GGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred             CCCeEEEeeccCCCCeECCCeEEEEeC
Confidence            99999999986432 122334566654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=99.73  E-value=1.4e-17  Score=104.43  Aligned_cols=79  Identities=23%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++.+..+++.+|++|+|+|.+++.  ....+.||||.++   ..+.      ..+.||....++.++.++|+|.+++++
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~------~~~~~~~~~~~~~~~~~~L~I~~l~~~   76 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSI------SIGGRYVETVNKGSKSFSLRISDLRVE   76 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeee------eecccccceeECCCCceeeeecccccC
Confidence            3566778999999999999999754  4467999999742   2221      246788887777788899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|++.
T Consensus        77 Dsa~YyCa~~   86 (113)
T d1vesa_          77 DSGTYKCQAF   86 (113)
T ss_dssp             GCEEEEEEEE
T ss_pred             CcceEeeeee
Confidence            9999999984

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.73  E-value=7.3e-17  Score=102.73  Aligned_cols=85  Identities=24%  Similarity=0.291  Sum_probs=64.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEe---cceEEc---CCCCEEEEEeCCCCcEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTS---GVLTYT---NDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~---~~~~~~---~~~R~~~~~~~~~~~~~L~   76 (113)
                      +++-...+++.+|++|+|.|.+++.  ..+.++||||.+   +. ++..   +.....   ..+||.+..+++++.++|+
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            4444556889999999999999864  467899999984   23 3332   222222   2469999877777789999


Q ss_pred             EccCCCCCCEEEEEeec
Q psy14080         77 IKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~   93 (113)
                      |++++++|+|+|+|+..
T Consensus        84 i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccccCcEEEEeee
Confidence            99999999999999984

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.73  E-value=1.2e-17  Score=104.30  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=66.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEec--ceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTSG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .++....+++.+|++|+|+|.++......+.||||.+   +.+|...  ......++||....+.+...++|.|++++++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            3566777899999999999999877667899999984   3333321  1112235789887666777899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        83 Dsa~YyCA~~~   93 (110)
T d1ac6a_          83 DSAVYYCALSG   93 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCcccceeecC
Confidence            99999999853

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.72  E-value=5.3e-18  Score=105.85  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=61.5

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEecceE--EcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSGVLT--YTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +++ +..+++.+|++|+|+|+.+......++||||.++   ..|......  -...+||.+..  ++..++|.|.+++++
T Consensus         3 ltQ-P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~~~~~~L~I~~l~~~   79 (108)
T d1nfde1           3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPE   79 (108)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGG
T ss_pred             eEC-CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--CCCEeeeeEcCcccc
Confidence            444 4568899999999999987666668999999843   333322111  12357998864  346789999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        80 Dsa~YyCA~~   89 (108)
T d1nfde1          80 DEAAYYCLSS   89 (108)
T ss_dssp             GCSEEEEEEE
T ss_pred             CCceEEEEee
Confidence            9999999985

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=2.1e-17  Score=99.18  Aligned_cols=84  Identities=18%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+.......+.+.+|+++.|.|.+.+.+.+.|.|+|.  +..+        .++|+.+.      +..|.|.+++.+|+|
T Consensus         4 ~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~--~~~i--------~~~~~~~~------~~~L~i~~v~~~d~G   67 (89)
T d1biha4           4 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN--AKPL--------SGGRATVT------DSGLVIKGVKNGDKG   67 (89)
T ss_dssp             EEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEET--TEEC--------CSSSEEEE------TTEEEESSCCSTTCE
T ss_pred             eEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeC--CccC--------ccccEEEe------eeeEEECCCChhhCE
Confidence            3444444567889999999999999999999999983  3333        35688765      226999999999999


Q ss_pred             EEEEee-cCCCCeeEEEEece
Q psy14080         87 TYECQA-QPYTTTSHSQNAPG  106 (113)
Q Consensus        87 ~Y~C~~-~~~~~~s~~~~L~V  106 (113)
                      .|.|.+ +..+..+..+.|.|
T Consensus        68 ~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          68 YYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999 56677788888876

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.72  E-value=3.6e-17  Score=102.34  Aligned_cols=86  Identities=13%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCC---CeEE-Eec--ceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRD---WHIL-TSG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~---~~~l-~~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      .++....+++.+|++|+|+|.+... ....++||||.+   +..+ ...  ........|+.+......+.++|+|++++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            3566777899999999999998754 356799999974   2333 221  11112345777766667789999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|++..
T Consensus        83 ~~Dsg~YyCa~~~   95 (114)
T d2ak4d1          83 VVDSAVYFCALSG   95 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccCCCceEeCCC
Confidence            9999999999853

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=3.9e-17  Score=98.06  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....+.++.+|+++.|.|.+.+.|.+.|.|+|.  +..+       ..+.|+.+.      +.+|.|.+++.+|+|.|.
T Consensus         5 ~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~--g~~i-------~~~~~~~~~------~~~L~i~~v~~~D~G~Y~   69 (89)
T d1cs6a4           5 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD--GQPL-------ASQNRIEVS------GGELRFSKLVLEDSGMYQ   69 (89)
T ss_dssp             EECCCCEEEETTCCEEEECEEEEESCCEEEEEET--TEEC-------CCCSSEEEE------TTEEEESSCCGGGCEEEE
T ss_pred             EEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEe--eccc-------cccceeeee------eeeEEEEeecccCCEEEE
Confidence            3445678899999999999999999999999983  3333       246688765      348999999999999999


Q ss_pred             Eee-cCCCCeeEEEEecee
Q psy14080         90 CQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~  107 (113)
                      |.+ +..+..+..+.|.|+
T Consensus        70 C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          70 CVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEEE
Confidence            999 566778888999886

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.72  E-value=6.1e-17  Score=102.16  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-Ee---cceEEc---CCCCEEEEEeCCCCcEEEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TS---GVLTYT---NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~---~~~~~~---~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++++.+..+++.+|++|+|.|..++...+.++||||.++   ..| ..   +.....   ...||.+.. .+++.++|+|
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i   81 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH-ASPTLSTLTV   81 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE-CSSSEEEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec-cccccccccc
Confidence            356667778999999999999998877789999999842   333 21   111222   256888864 4567789999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|+|+|+|+...
T Consensus        82 ~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          82 TSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cccccccCceEEEEEec
Confidence            99999999999999853

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.1e-17  Score=97.33  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=68.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      |+.+.....++.++.+|+++.|.|.+. +.+.+.|.|+|.+. .+         ...+....      +.+|+|.+++.+
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~-~~---------~~~~~~~~------~~~L~i~~v~~~   64 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN-GK---------LPSRAMDF------NGILTIRNVQPS   64 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGG-BC---------CCTTEEEE------TTEEEECSCCGG
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCc-ee---------eccccEee------ceEEEEecCCcc
Confidence            677777788889999999999999997 56778999998542 11         12343332      448999999999


Q ss_pred             CCEEEEEee-cCCCCeeEEEEecee
Q psy14080         84 DNGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      |+|.|.|.+ +..+..+..+.|.|+
T Consensus        65 d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          65 DAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cCEEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999 456778888998885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=1.2e-17  Score=100.58  Aligned_cols=86  Identities=15%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.+....+.++++.+|++++|.|.+.+.+.+.|.|+|.++..           ..++      ...+.+|.|.+++.+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~-----------~~~~------~~~~~~L~I~~v~~~D   66 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ-----------TSKW------LSSEPLLHIQNVDFED   66 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCC-----------SCCC------SBSSSEEEECSCCGGG
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEeccccc-----------ceEe------eeeeeEEEeCCCCccC
Confidence            5677777788999999999999999999999999999854211           1111      1134589999999999


Q ss_pred             CEEEEEee-cCCCCeeEEEEecee
Q psy14080         85 NGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        85 ~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      +|.|.|.+ +..+..+..++|.|.
T Consensus        67 ~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          67 EGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEE
Confidence            99999999 556778888888874

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=99.72  E-value=4.3e-17  Score=102.27  Aligned_cols=85  Identities=15%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccC------CCCEEEEEecCC---CeEEEecceE--EcCCCCEEEEEeCCCCcEEEE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDI------VKVRVSWVRRRD---WHILTSGVLT--YTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~------~~~~V~W~k~~~---~~~l~~~~~~--~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      ++++.+..+++.+|++|+|+|.+++.      ..+.|+||||.+   +.++......  ...++||...  .+++.++|+
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~s~~~~~L~   80 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGTDFTLT   80 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--CCCCeEeEE
Confidence            45777888999999999999998743      235699999974   3444433221  2346788875  356789999


Q ss_pred             EccCCCCCCEEEEEeecC
Q psy14080         77 IKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~   94 (113)
                      |++++++|+|+|+|+.+.
T Consensus        81 I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          81 ITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             ecccccCCCeEEEecccC
Confidence            999999999999999864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=99.72  E-value=3.7e-17  Score=102.59  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|+|.+++.  ....|+||||.++   ..+.      ..+.||....+...+.++|+|++++++|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~------~~~gr~~~~~~~~~~~~~L~I~~l~~~D   76 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI------SKGGRYVETVNSGSKSFSLRINDLTVED   76 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeee------ccCCcEeeEEecCCceeeeEecCCcCcc
Confidence            455667889999999999999754  3468999999842   2222      2467898877667778999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|++..
T Consensus        77 sa~YyCA~~~   86 (112)
T d1sq2n_          77 GGTYRCGLGV   86 (112)
T ss_dssp             CEEEEEEECB
T ss_pred             CEEEeEEEec
Confidence            9999999854

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=99.72  E-value=9.2e-18  Score=103.66  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEec-ce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTSG-VL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~~-~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ..+++.+|++|+|+|.++......++||||.++   ..+... .. ......||....  +.+.+.|.|.+++++|+|+|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST--SGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC--CCCccCceEcCcchhHCceE
Confidence            468899999999999998766678999999853   333321 11 112356887764  45679999999999999999


Q ss_pred             EEeecC
Q psy14080         89 ECQAQP   94 (113)
Q Consensus        89 ~C~~~~   94 (113)
                      +|+...
T Consensus        84 yCA~~~   89 (103)
T d8faba1          84 YCQAWD   89 (103)
T ss_dssp             EEEEEE
T ss_pred             EeeecC
Confidence            999853

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.71  E-value=3e-17  Score=103.27  Aligned_cols=101  Identities=16%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEec-ceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSG-VLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ++++.+..+++.+|++|+|.|..+. ....++||||.++   . ++... .......+|+.+..+..+..++|+|.++++
T Consensus         2 ~l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (115)
T d1ogad1           2 LLEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP   80 (115)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred             ceEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence            4677778899999999999999875 3457999999853   2 22221 111223467777766778899999999999


Q ss_pred             CCCEEEEEeecCC-CC--eeEEEEeceecc
Q psy14080         83 RDNGTYECQAQPY-TT--TSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~~~-~~--~s~~~~L~V~g~  109 (113)
                      +|+|+|+|+.... ..  .=....|.|+.+
T Consensus        81 ~Dsa~YyCa~~~~~~~~~FG~GT~LtV~~~  110 (115)
T d1ogad1          81 GDTGLYLCAGAGSQGNLIFGKGTKLSVKPN  110 (115)
T ss_dssp             GGCEEEEEEEECTTSSEEECCCEEEEEECC
T ss_pred             cceeeEcccccCCCCCcEECCCEEEEEecC
Confidence            9999999998532 21  123345666643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.6e-17  Score=102.22  Aligned_cols=91  Identities=12%  Similarity=-0.011  Sum_probs=64.5

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCC---CeEEEec-ceE-E---cCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WHILTSG-VLT-Y---TNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~~l~~~-~~~-~---~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.+.+|++++|+|.++..  ....++|||+.+   ..++... ... .   ...+||.+..+...+.++|+|.+++++|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            567899999999998642  456899999974   2333321 111 1   12369998877778889999999999999


Q ss_pred             EEEEEeecCCCCe----eEEEEece
Q psy14080         86 GTYECQAQPYTTT----SHSQNAPG  106 (113)
Q Consensus        86 G~Y~C~~~~~~~~----s~~~~L~V  106 (113)
                      |+|+|++...+..    ...+.|.|
T Consensus        89 g~Y~Cav~~~~~~~~~~~~~~~L~V  113 (113)
T d1smoa_          89 GLYQCVIYQPPKEPHMLFDRIRLVV  113 (113)
T ss_dssp             EEEEEEECCTTSCCEECSCEEEEEC
T ss_pred             ceEEEEEECCCCCCEEEECCEEEEC
Confidence            9999999654322    34455554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.1e-16  Score=97.64  Aligned_cols=91  Identities=13%  Similarity=0.023  Sum_probs=64.1

Q ss_pred             eecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEE--EecceE-EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHIL--TSGVLT-YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l--~~~~~~-~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      .....+.+.+|+++.|.|.+++.+.+.|.|+|.+.....  ..+... .....|+...      +.+|.|.+++.+|+|.
T Consensus         6 t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS------SSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE------TTEEEESCCCGGGCEE
T ss_pred             ccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec------CCEEEEeECCccCCEE
Confidence            344568899999999999999999999999997653322  122211 1224566553      4589999999999999


Q ss_pred             EEEeec-CCCCee--EEEEecee
Q psy14080         88 YECQAQ-PYTTTS--HSQNAPGL  107 (113)
Q Consensus        88 Y~C~~~-~~~~~s--~~~~L~V~  107 (113)
                      |+|.+. ..+...  ..++|.|+
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~Vl  102 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLTVL  102 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEEEC
Confidence            999994 455544  44555553

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.71  E-value=7.4e-18  Score=101.41  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             ecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .++++++.+|+++.|.|.+.+.|.+.|.|+|.+  ..+       ..+.|+.+..  .....+|.|.+++.+|+|.|.|.
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g--~~l-------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~   73 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKG--QVL-------STSARHQVTT--TKYKSTFEISSVQASDEGNYSVV   73 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSS--STT-------CSSSSCEEEE--CSSEEEEECSSCCSCCCEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEee--ccc-------ccccceeeee--ecceeEEeecCCCHHHCEEEEEE
Confidence            346778999999999999999999999999843  222       2356666653  34678999999999999999999


Q ss_pred             ec-CCCCeeEEEEecee
Q psy14080         92 AQ-PYTTTSHSQNAPGL  107 (113)
Q Consensus        92 ~~-~~~~~s~~~~L~V~  107 (113)
                      +. ..+..+..+.|.|.
T Consensus        74 a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          74 VENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CBCSSCBCCEEEEEECC
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            94 56777888999885

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-17  Score=103.86  Aligned_cols=84  Identities=17%  Similarity=0.060  Sum_probs=61.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCCC----eE--EEec-ce-EE---cCCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRDW----HI--LTSG-VL-TY---TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~----~~--l~~~-~~-~~---~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.+...++.+|++|+|+|.++... ...|+||||.++    .+  +... .. ..   ....||.+..  ..+.++|+|
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I   81 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LGDTFVLTL   81 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ETTEEEEEE
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CCCChhcEE
Confidence            4566778899999999999997654 457999999842    12  2222 11 11   1246888764  346799999


Q ss_pred             ccCCCCCCEEEEEeecCC
Q psy14080         78 KFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~   95 (113)
                      ++++++|+|+|+|++...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999999653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.4e-17  Score=98.76  Aligned_cols=96  Identities=15%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      +.....++.++.+|+++.|.|.+.+.+. |.|.|+|.+.......      ...+...........++|+|.+++.+|+|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   78 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL------EDRQTSWKEEKNISFFILHFEPVLPNDNG   78 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEEC------CSSCEEEEECSSCEEEEEEESSCCGGGCE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccccccc------ceeeeeEEecCCceEEEEEEccccHHHCC
Confidence            3345666789999999999999999884 7999999653322211      12222233223345678999999999999


Q ss_pred             EEEEeec-CCCC-eeEEEEeceecc
Q psy14080         87 TYECQAQ-PYTT-TSHSQNAPGLGD  109 (113)
Q Consensus        87 ~Y~C~~~-~~~~-~s~~~~L~V~g~  109 (113)
                      .|.|.+. ..+. .+..+.|.|.+.
T Consensus        79 ~Y~C~A~N~~G~~~s~~~~l~V~ev  103 (104)
T d2aw2a1          79 SYRCSANFQSNLIESHSTTLYVTDV  103 (104)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECG
T ss_pred             eEEEEEEcCCCeEEEEEEEEEEEEC
Confidence            9999995 4454 356788888753

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.7e-17  Score=98.35  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC-C
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ-K   82 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~   82 (113)
                      |+.|.. ..++..+.+|++|.|.|.+.+.+.+ .+.|||..........   .....||.+..  ..+..+|.|.+++ .
T Consensus         2 PP~i~~-~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~---~~~~~~~~~~~--~~~~~~L~I~~v~~~   75 (101)
T d3b5ha1           2 PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM---NGSESRFFVSS--SQGRSELHIENLNME   75 (101)
T ss_dssp             SCCCEE-SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC---TTGGGTEEEEE--ETTEEEEEECSCCTT
T ss_pred             CceEEE-cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecc---cCCCceEEEEe--CCCEEEEEEeccccc
Confidence            555554 5577889999999999999988766 7999986532111100   01346787764  2457799999998 5


Q ss_pred             CCCEEEEEee-cCCCCeeEEEEecee
Q psy14080         83 RDNGTYECQA-QPYTTTSHSQNAPGL  107 (113)
Q Consensus        83 ~D~G~Y~C~~-~~~~~~s~~~~L~V~  107 (113)
                      +|+|.|.|.+ +..+..+..+.|.|+
T Consensus        76 ~D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          76 ADPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCCEEEEEEEEECCCEEEEEEEEEEC
Confidence            7999999999 566788888999884

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.4e-16  Score=96.59  Aligned_cols=88  Identities=18%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             ecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYEC   90 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (113)
                      .+.++++.+|+++.|.|.+.+.+. +.|.|||.++..+.       ...+|+.+... .....+|.|.+++.+|+|.|.|
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEE-ETTEEEEEECSCCGGGCEEEEE
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeee-------eccccEEEEee-cCcceEEEcccCchhhceEEEE
Confidence            355678999999999999998874 69999986533322       23568877642 3456799999999999999999


Q ss_pred             eec-CCCCe-eEEEEecee
Q psy14080         91 QAQ-PYTTT-SHSQNAPGL  107 (113)
Q Consensus        91 ~~~-~~~~~-s~~~~L~V~  107 (113)
                      .+. ..+.. +..++|.|.
T Consensus        78 ~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEETTTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEE
Confidence            995 44543 567888774

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=99.94  Aligned_cols=83  Identities=13%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC-CCEEEEEecCC---CeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV-KVRVSWVRRRD---WHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~---~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ++.+..+++.+|++|+|+|.+++.. ...|+||||.+   +..|.....  ......|+.+.  .+.+.+.|+|++++++
T Consensus         2 t~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~   79 (112)
T d1kgcd1           2 TTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA--EDRKSSTLILHRATLR   79 (112)
T ss_dssp             EECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC--TTSSEEEEEESSCCGG
T ss_pred             eECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec--ccCCeeEEEEeecccc
Confidence            4456678999999999999997544 45699999974   333322211  11223355543  5677889999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|++..
T Consensus        80 Dsa~YyCa~~~   90 (112)
T d1kgcd1          80 DAAVYYCILPL   90 (112)
T ss_dssp             GCEEEEEECCC
T ss_pred             cceeEeeeEec
Confidence            99999999853

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=99.54  Aligned_cols=95  Identities=11%  Similarity=-0.010  Sum_probs=65.3

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEe-cceEE--cCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTS-GVLTY--TNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~-~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      ........+.+.+.+|+++.|+|.+.+.+.+.|.|+|.+....... .....  ....|+...      +.+|.|.+++.
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~   77 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL------PTGITFKSVTR   77 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE------TTEEECSCCCT
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec------CceEEEecccc
Confidence            3334455667899999999999999999999999999764322211 11111  123455543      34899999999


Q ss_pred             CCCEEEEEeec-CCCCeeE--EEEece
Q psy14080         83 RDNGTYECQAQ-PYTTTSH--SQNAPG  106 (113)
Q Consensus        83 ~D~G~Y~C~~~-~~~~~s~--~~~L~V  106 (113)
                      +|+|.|.|.+. ..+....  .++|.|
T Consensus        78 ~D~G~Y~C~a~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          78 EDTGTYTCMVSEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCE
T ss_pred             cceeeEEEEEEECCCCEEEEEEEEEEE
Confidence            99999999994 5555544  444444

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=99.69  E-value=1.5e-16  Score=100.84  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=63.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCC---Ce-EEEec---ceEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRD---WH-ILTSG---VLTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~---~~-~l~~~---~~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ++....+++.+|++|+|.|.+++.  ....|+||||.+   ++ ++...   ....  ...+||.+..++.++.++|+|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            344456888999999999998754  346799999984   23 33321   1111  2346998887677788999999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++++|+|+|+|+...
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999999853

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.69  E-value=2e-16  Score=98.50  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=59.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEec---ceEE-cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTSG---VLTY-TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~~---~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|+|..++ ....++||||.++   . ++...   .... ....||.... ...+.++|+|.+++
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR-PSQEQFSLILESAT   82 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE-EETTEEEEEESSCC
T ss_pred             EEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe-ccCCEEEEEECCCC
Confidence            45667788999999999999875 4568999999842   2 23221   1111 1234665543 34467999999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|+...
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.69  E-value=2.4e-16  Score=98.65  Aligned_cols=98  Identities=10%  Similarity=0.029  Sum_probs=66.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe--c-ce--EEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS--G-VL--TYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~--~-~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|+|..+ .....++||||.++   .++..  . ..  .....+||.... ..++.++|+|++++
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   80 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR-EKKESFPLTVTSAQ   80 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECC-SSTTBCCEEECSCC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEc-ccCCeEEEEECcCC
Confidence            4566778999999999999986 45678999999853   23322  1 11  112234665543 34567899999999


Q ss_pred             CCCCEEEEEeecCCCC----eeEEEEeceecc
Q psy14080         82 KRDNGTYECQAQPYTT----TSHSQNAPGLGD  109 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~----~s~~~~L~V~g~  109 (113)
                      ++|+|+|+|+......    .=....|.|+.+
T Consensus        81 ~~DSa~YyCa~~~~~~~~~~FG~GT~LtV~~~  112 (114)
T d1ogae1          81 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTED  112 (114)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESC
T ss_pred             cCCceeEEEeeccCCCCccEECCCEEEEECCC
Confidence            9999999999853221    123456666654

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.69  E-value=4.7e-16  Score=97.00  Aligned_cols=83  Identities=13%  Similarity=0.030  Sum_probs=60.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-Ee--cceEE---cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TS--GVLTY---TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~--~~~~~---~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++.+..+++.+|++|+|+|.... ....|+||||.+   +..+ ..  +....   ...+||.... ...+.++|+|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~   80 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQRT   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESSC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECCC
Confidence            45667788999999999998653 457899999984   2332 22  11111   1246887653 4556789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+.+.
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999999964

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.68  E-value=2.3e-16  Score=98.67  Aligned_cols=82  Identities=20%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEE-EecceEEcCCCCEE-EEEeCCCCcEEEEEccCCCCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HIL-TSGVLTYTNDARFQ-VIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l-~~~~~~~~~~~R~~-~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++.+..+++.+|++|+|.|.++. ....|.||||..+   ..| ........ ++++. ....+..+.++|+|++++++|
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKE-NGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEE-ETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeecc-ccccceEEeecCCceeEEEECCCCHhH
Confidence            56677889999999999999875 4568999999742   222 22221111 12222 222244567899999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|++.
T Consensus        83 sa~YyCa~~   91 (113)
T d1h5ba_          83 SGTYFCAAE   91 (113)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEec
Confidence            999999985

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.68  E-value=3.9e-16  Score=97.28  Aligned_cols=83  Identities=18%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEe-c-ceEEc---CCCCEEEEEeCCCCcEEEEEccC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTS-G-VLTYT---NDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~-~-~~~~~---~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      ++.+..+++.+|++|+|.|.... ....++||||.++   . ++.. . .....   .+.||.... .++..++|+|+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~~~   80 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER-TGGTYSTLKVQPA   80 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC-TTSSSEEEEESSC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc-CCCCEEEEEECCc
Confidence            46677788999999999998543 4568999999842   2 3322 1 11111   256887763 4556789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+...
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999999753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.4e-16  Score=98.23  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=68.1

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC----CCCEEEEEecCCC----e-EEEe-cc-eEEcC----CCCEEEEEeCCCCcE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI----VKVRVSWVRRRDW----H-ILTS-GV-LTYTN----DARFQVIHTDGSDDW   73 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~----~-~l~~-~~-~~~~~----~~R~~~~~~~~~~~~   73 (113)
                      .......+.+.+|++|+|+|.+...    ....|.|+|+..+    . ++.. +. .....    .+|+.+..+...+++
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            4556677889999999999998632    2347999987631    2 2222 11 11111    258877655566788


Q ss_pred             EEEEccCCCCCCEEEEEeecCCC---CeeEEEEecee
Q psy14080         74 NLQIKFLQKRDNGTYECQAQPYT---TTSHSQNAPGL  107 (113)
Q Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~---~~s~~~~L~V~  107 (113)
                      +|+|++++.+|+|.|+|.+...+   .....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999996533   34556788875

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.68  E-value=3.7e-16  Score=97.55  Aligned_cols=82  Identities=13%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEE-e--cceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILT-S--GVLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~-~--~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+.+.+|++|+|.|..+. ....|+||||.++   ..|. .  +....  ....||.... .+...++|+|++++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ-FSNSRSEMNVSTLE   80 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCC
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeecc-CcCCeeEEEECCCC
Confidence            45566789999999999999754 4568999999852   2222 1  11111  2356776653 55678999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      ++|+|+|+|+..
T Consensus        81 ~~Dsa~YyCA~~   92 (113)
T d2ntsp1          81 LGDSALYLCASS   92 (113)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceeeeeeee
Confidence            999999999985

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.67  E-value=2.5e-16  Score=99.80  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             EEecCCcEEEEEEEccCC----CCEEEEEecCCCe----EEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV----KVRVSWVRRRDWH----ILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~~----~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+.+|++++|.|++++..    .+.++||||.++.    ++..   +...+.  ..+||.+..++.++.+.|+|++++++
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            478899999999998642    3579999998532    3322   222222  25799998777778899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999864

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.67  E-value=6.1e-19  Score=108.05  Aligned_cols=79  Identities=11%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCC---e-EEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---H-ILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~-~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .++|.+|++|+|+|.+.. ....|.||||.++   . ++.. .......++||.+..++.++.++|+|.+++++|+|+|+
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            357889999999999875 4468999999742   2 2222 11112235788876555667789999999999999999


Q ss_pred             EeecC
Q psy14080         90 CQAQP   94 (113)
Q Consensus        90 C~~~~   94 (113)
                      |++..
T Consensus        81 CA~~~   85 (96)
T d1ymmd1          81 CATDT   85 (96)
T ss_dssp             EEEEE
T ss_pred             EeEec
Confidence            99853

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.66  E-value=3.9e-16  Score=98.14  Aligned_cols=83  Identities=12%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---c-ceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---G-VLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~-~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .+.|.. .+.+|++++|.|++++.  .++.++||||.++.    +..+   + ...+.  -.+||.+..++.++...|+|
T Consensus         5 ~esg~~-~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i   83 (115)
T d1f3dh1           5 QQSGPE-LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHL   83 (115)
T ss_dssp             EECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EeECCc-EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeee
Confidence            444443 58899999999999975  45789999998542    2121   1 22222  24699998887888899999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++.+|+|+|+|+-.
T Consensus        84 ~~l~~eDtAvYYCAr~   99 (115)
T d1f3dh1          84 NSLTFEDSAVYYCAND   99 (115)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             eecCcCCcEEEEEecc
Confidence            9999999999999874

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.7e-16  Score=99.27  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=61.7

Q ss_pred             eEEEecCCcEEEEEEEccC--CCCEEEEEecCCC---e-EEEecc--eEE--cCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW---H-ILTSGV--LTY--TNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~---~-~l~~~~--~~~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ...+.+|++++|.|.+++.  ....+.|+||.++   . ++..+.  ..+  ...+||.+..++..+.++|+|++++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3578999999999999853  5678999999742   2 222211  111  1246999987777888999999999999


Q ss_pred             CEEEEEeecCCC
Q psy14080         85 NGTYECQAQPYT   96 (113)
Q Consensus        85 ~G~Y~C~~~~~~   96 (113)
                      +|+|+|++...+
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999996544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.1e-16  Score=93.07  Aligned_cols=75  Identities=13%  Similarity=0.012  Sum_probs=61.8

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      .+..+.+|++++|.|.+.+.+.+.|.|+|.+. .+              . .     +..+|.|.+++.+|+|.|.|.+ 
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~-~~--------------~-~-----~~~~l~i~~v~~~DsG~Y~C~a~   65 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRG-KN--------------I-Q-----GGKTLSVSQLELQDSGTWTCTVL   65 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTC-CE--------------E-E-----ESSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecc-cc--------------e-e-----eeeeeeeeecccccccEEEEEEE
Confidence            34578999999999999999999999998432 11              1 1     2347999999999999999999 


Q ss_pred             cCCCCeeEEEEeceecc
Q psy14080         93 QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g~  109 (113)
                      +..+..+..+.|.|+|.
T Consensus        66 N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          66 QNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             ETTEEEEEEEEECEECC
T ss_pred             eCCCEEEEEEEEEEEec
Confidence            56678889999999985

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.8e-17  Score=97.85  Aligned_cols=88  Identities=15%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEE--cC--CCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTY--TN--DARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~--~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++.+.+.+|++|+|+|.+. .+.+.|.|+|.. ..+........  ..  ..|..+    +..+++|+|++++++|+|.|
T Consensus         2 s~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~----~~~~~sL~I~~l~~~DsG~Y   75 (93)
T d1ccza1           2 SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQK-DKVAELENSEFRAFSSFKNRVYL----DTVSGSLTIYNLTSSDEDEY   75 (93)
T ss_dssp             EEEEEEETTCCEEECCCCS-SCCSCEEEEETT-EEEEEEETTEEEECGGGTTSEEE----CTTTCCEEECSCCGGGCEEE
T ss_pred             CcEEEEEECCCEEEEecCC-CCCcEEEEEEec-cccceeeecceeeCCCccceEEE----cCCeeEEEEEecChhhCEEE
Confidence            4568899999999999875 467789999854 33322211111  11  234443    24578999999999999999


Q ss_pred             EEeecCCCCeeEEEEecee
Q psy14080         89 ECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        89 ~C~~~~~~~~s~~~~L~V~  107 (113)
                      .|.+... ..+..++|.|+
T Consensus        76 ~c~~~n~-~~t~~~~l~V~   93 (93)
T d1ccza1          76 EMESPNI-TDTMKFFLYVL   93 (93)
T ss_dssp             EEECTTC-CSCEEEEEEEE
T ss_pred             EEEEECC-CcEEEEEEEEC
Confidence            9999543 33445788774

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.3e-17  Score=101.15  Aligned_cols=95  Identities=12%  Similarity=0.045  Sum_probs=63.7

Q ss_pred             ecceEEEecCCcEEEEEEEccC-------CCCEEEEEecCCCe----EEEe-cceE-E--cCCCCEEEEEeCCCCcEEEE
Q psy14080         12 FGQISTGFLAVFSYSDKTVRDI-------VKVRVSWVRRRDWH----ILTS-GVLT-Y--TNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus        12 ~~~~~tv~~G~~a~L~C~v~~~-------~~~~V~W~k~~~~~----~l~~-~~~~-~--~~~~R~~~~~~~~~~~~~L~   76 (113)
                      ....++|.+|++|+|+|.++..       ....+.|||+....    ++.. .... .  .-.+|+.+..+...++++|+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            4567899999999999999622       22468999986321    1111 1111 1  12468888765566789999


Q ss_pred             EccCCCCCCEEEEEeecCCCCe----eEEEEece
Q psy14080         77 IKFLQKRDNGTYECQAQPYTTT----SHSQNAPG  106 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~~~~----s~~~~L~V  106 (113)
                      |++++++|+|.|+|.+...+..    ...+.|.|
T Consensus        87 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  120 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV  120 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred             ECCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence            9999999999999999654422    23455555

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=8.8e-16  Score=96.36  Aligned_cols=95  Identities=13%  Similarity=0.095  Sum_probs=65.0

Q ss_pred             eEEEecCCcEEEEEEEccC---CCCEEEEEecCCCe-E-EEecceEE------cCCCCEEEEEe-CCCCcEEEEEccCCC
Q psy14080         15 ISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRDWH-I-LTSGVLTY------TNDARFQVIHT-DGSDDWNLQIKFLQK   82 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~~~-~-l~~~~~~~------~~~~R~~~~~~-~~~~~~~L~I~~v~~   82 (113)
                      .+++.+|++|+|+|.++..   ....|.|+|..... + +.......      .-..|..+... ...++++|+|++++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            4889999999999998632   34579999976432 2 22211111      11246665432 234579999999999


Q ss_pred             CCCEEEEEeecC-CCCeeEEEEeceecc
Q psy14080         83 RDNGTYECQAQP-YTTTSHSQNAPGLGD  109 (113)
Q Consensus        83 ~D~G~Y~C~~~~-~~~~s~~~~L~V~g~  109 (113)
                      +|+|.|+|.+.. ....+..++|.|.+.
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            999999999964 345678889999864

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=94.22  Aligned_cols=86  Identities=14%  Similarity=0.065  Sum_probs=63.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      +..-+++++.+|+++.|.|.++ .+.+.|.|||.  +..+..     ....++.+..  +.+.++|+|.+++++|+|.|.
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~--~~~~~~-----~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~   73 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEVS-EDDANVKWFKN--GEEIIP-----GPKSRYRIRV--EGKKHILIIEGATKADAAEYS   73 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEECS-SSSCCCEEEET--TEECCC-----STTCSEEEEE--ETTEEEEEEEEECTTTCSEEE
T ss_pred             EcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEe--ecccCC-----CCCccEEEEE--eCCccEEEECccccccCEEEE
Confidence            4455788999999999999996 47788999984  333221     1234566653  346789999999999999999


Q ss_pred             EeecCCCCeeEEEEeceec
Q psy14080         90 CQAQPYTTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~~~~~~~s~~~~L~V~g  108 (113)
                      |.+..   .+..++|.|+.
T Consensus        74 C~a~n---~~~~a~l~V~~   89 (90)
T d1x44a1          74 VMTTG---GQSSAKLSVDL   89 (90)
T ss_dssp             EEETT---EEEEEEEEEEC
T ss_pred             EEEec---ceEEEEEEEEE
Confidence            99854   34567787764

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=99.65  E-value=7.6e-16  Score=97.42  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=58.7

Q ss_pred             EEecCCcEEEEEEEccC----CCCEEEEEecCCCe----E--EEe-cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI----VKVRVSWVRRRDWH----I--LTS-GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~----~~~~V~W~k~~~~~----~--l~~-~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+.+|+++.|.|++++.    .++.++||||.++.    +  +.. +...+.  ..+||.+..+..++.+.|+|.++++|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            57899999999999874    34679999998532    1  111 222222  14799999888888899999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+-
T Consensus        91 DtAvYYCAr   99 (120)
T d1ai1h1          91 DTAMYYCSR   99 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEEEEe
Confidence            999999986

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.65  E-value=1.3e-15  Score=96.34  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeE---E-Ee---c-ceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHI---L-TS---G-VLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~---l-~~---~-~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.|. ..+.+|++++|.|++++.  ..+.++||||.++.-   + .+   + ...+.  -.+||.+..+..++...|+|
T Consensus         5 ~qsg~-~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i   83 (120)
T d1pg7x1           5 QQSGP-ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIEL   83 (120)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eeECC-cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccc
Confidence            34444 357899999999999865  357899999986431   1 11   1 11222  24799998888888999999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++.+|+|+|+|+..
T Consensus        84 ~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          84 VRLTSNDSAVYYCARE   99 (120)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEeeec
Confidence            9999999999999973

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=2.6e-16  Score=95.59  Aligned_cols=83  Identities=13%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-c
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-Q   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   93 (113)
                      ..++.+|+++.|.|.+.+.+.+.|.|||.  +..+..+.    ...++...    .+.++|.|.+++.+|+|.|.|.+ +
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kn--g~~l~~~~----~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKN--GKEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVEN   83 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEET--TEECCGGG----STTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEEC--CEeccccC----ceeeEEEc----CCcEEEEECCCCcccCEEEEEEEEE
Confidence            46788999999999999999999999983  33332111    11222222    24679999999999999999999 5


Q ss_pred             CCCCeeEEEEecee
Q psy14080         94 PYTTTSHSQNAPGL  107 (113)
Q Consensus        94 ~~~~~s~~~~L~V~  107 (113)
                      ..+..+..+.|.|+
T Consensus        84 ~~G~~~~~~~l~Vl   97 (97)
T d3dara1          84 EYGSINHTYHLDVV   97 (97)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEC
Confidence            66788889999885

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.5e-16  Score=93.12  Aligned_cols=88  Identities=10%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      +.++-.....+.+.+|+++.|.|.+++ +.+.|.|||.+  ..+.      ..+.|+.+..  .++.++|.|.+++.+|+
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g--~~i~------~~~~~~~~~~--~~~~~~L~I~~~~~~D~   74 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG--QEIQ------MSGSKYIFES--IGAKRTLTISQCSLADD   74 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEESS--SEEC------CCSSSSEEEE--ETTEEEEEECSCSSSSC
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEEcC--ccce------eeeeeEeeec--cCCeEEeecCCCCceec
Confidence            334445555678999999999999965 77899999843  3332      1345677653  34678999999999999


Q ss_pred             EEEEEeecCCCCeeEEEEecee
Q psy14080         86 GTYECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        86 G~Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      |.|.|.+..   .+..+.|.|+
T Consensus        75 G~Y~c~a~n---~~~s~~l~V~   93 (94)
T d1pd6a_          75 AAYQCVVGG---EKCSTELFVK   93 (94)
T ss_dssp             EEEEEEETT---EEECCEEEEE
T ss_pred             EEEEEEEee---EEEEEEEEEE
Confidence            999999843   3455677775

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.64  E-value=8.1e-16  Score=96.81  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ec-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SG-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.+++    +  +. .+ ...+.  -.+||.+..+..++...|+|++++.|
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            468899999999999975  46789999998532    1  11 12 22222  25799998888888899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999863

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.64  E-value=1.6e-15  Score=95.37  Aligned_cols=84  Identities=13%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEE--cCCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTY--TNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~--~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.|. ..+.+|+++.|.|++++.  .++.++||||.++.    +  +.. + +..+  ...+||.+..+..++...|+|
T Consensus         5 ~esg~-~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i   83 (117)
T d1iqdb1           5 VQSGA-EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMEL   83 (117)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeECC-ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEee
Confidence            34443 467899999999999975  46789999998532    2  111 2 2222  236799999888888899999


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      ++++.||+|+|+|+...
T Consensus        84 ~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          84 SSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CSCCGGGCEEEEEEECS
T ss_pred             cccCcCcceEEEEeEcC
Confidence            99999999999999853

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=99.64  E-value=7.9e-16  Score=96.74  Aligned_cols=79  Identities=15%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEE--e-cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILT--S-GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~--~-~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.+++    +..  . +...+.  -.+||.+..+..++.+.|+|++++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            367889999999999975  46799999998532    211  1 332232  247999998888889999999999999


Q ss_pred             CEEEEEeecC
Q psy14080         85 NGTYECQAQP   94 (113)
Q Consensus        85 ~G~Y~C~~~~   94 (113)
                      +|+|+|+...
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999999743

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=99.64  E-value=7.8e-16  Score=97.29  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---cceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---GVLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|+++.|.|++++.  .++.++||||.+++    +..+   +...+..  .+||.+..+..++.+.|+|++++.+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            57889999999999975  45789999998532    2211   2222222  479999988788889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|+..
T Consensus        91 A~YYCAr~   98 (120)
T d1dn0b1          91 AVYYCARP   98 (120)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEee
Confidence            99999764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-16  Score=99.13  Aligned_cols=93  Identities=13%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             eEEEecCCcEEEEEEEccCCC---CEEEEEecC--CCeEEEe--cceEE-cCCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVK---VRVSWVRRR--DWHILTS--GVLTY-TNDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~--~~~~l~~--~~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+++.+|++|+|+|.++....   ..+.|+++.  ...++..  +.... ..++||........++++|+|+|++++|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            478899999999999974432   334554433  3334332  22222 124444421112246789999999999999


Q ss_pred             EEEEeecCCCC------eeEEEEecee
Q psy14080         87 TYECQAQPYTT------TSHSQNAPGL  107 (113)
Q Consensus        87 ~Y~C~~~~~~~------~s~~~~L~V~  107 (113)
                      +|+|++...+.      ....+.|.|+
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEEE
Confidence            99999964332      1345666665

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=99.63  E-value=1.1e-15  Score=96.56  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=60.1

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCC----eEEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW----HILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~----~~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|+++.|.|++++.  ..+.++||||.++    .+...   +...+.  -.+||.+..+..++.+.|+|++++++|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            67899999999999975  4678999999853    23222   122222  1479999987778889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|+..
T Consensus        90 A~YYCAr~   97 (119)
T d1kxvc_          90 AMYYCKPS   97 (119)
T ss_dssp             EEEEEEEE
T ss_pred             ceEeeeec
Confidence            99999874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-15  Score=90.48  Aligned_cols=80  Identities=10%  Similarity=0.020  Sum_probs=61.5

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      ..+.+.+|+++.|.|.+.+.+.+.+.|+|..+. ++         +.+...    .....+|.|.+++.+|+|.|.|.+ 
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~-~~---------~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~   74 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PL---------NGKVTN----EGTTSTLTMNPVSFGNEHSYLCTAT   74 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCC-CC---------SSEEEE----ETTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCcc-ce---------eeeeee----ecCCcEEEEecccccccceEEEEEE
Confidence            456678899999999999999999999986532 11         111111    124669999999999999999999 


Q ss_pred             cCCCCeeEEEEecee
Q psy14080         93 QPYTTTSHSQNAPGL  107 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~  107 (113)
                      +..+..+..++|.|.
T Consensus        75 N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          75 CESRKLEKGIQVEIY   89 (90)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            456788888888874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.4e-16  Score=94.90  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=62.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +...+++.++.+|+++.|.|.+.+.+.+.|.|+|.+  ..+..     ..+.++...     .+.+|.|.+++.+|+|.|
T Consensus         4 F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~--~~i~~-----~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y   71 (92)
T d1epfa2           4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG--RDVIL-----KKDVRFIVL-----SNNYLQIRGIKKTDEGTY   71 (92)
T ss_dssp             EEECCSSEECCTTSCEEECCEEECSSCCEEEEEETT--EEGGG-----GCCTTEEEC-----TTSCEEETTCCGGGCEEE
T ss_pred             EEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcC--ccccc-----ccceeeeee-----eeeeEEECCCCHHhCEEE
Confidence            455677889999999999999999999999999853  22211     123445443     234799999999999999


Q ss_pred             EEeecC-CCCeeEEEEece
Q psy14080         89 ECQAQP-YTTTSHSQNAPG  106 (113)
Q Consensus        89 ~C~~~~-~~~~s~~~~L~V  106 (113)
                      .|.+.. .........+.|
T Consensus        72 ~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          72 RCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             EEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEEECcCCEEEEEEEEE
Confidence            999954 344444455554

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=95.23  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEE-e-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILT-S-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~-~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+...++.+|++|+|+|..+. ....++||||.++   ..|. . + .....  ...|+.... .+.++++|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   80 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR-STTEDFPLRLLSAA   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC-SSSSBCCEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEec-CCCCEEEEEECCCC
Confidence            45566678999999999999864 5678999999853   2221 1 1 11111  235555543 45567899999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      ++|+|+|+|+..
T Consensus        81 ~~DsavYyCA~~   92 (112)
T d2bnub1          81 PSQTSVYFCASS   92 (112)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeec
Confidence            999999999985

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.63  E-value=7.6e-16  Score=97.39  Aligned_cols=83  Identities=13%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             eecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---cceE-Ec--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---GVLT-YT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~~~~-~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|.. .+.+|++++|.|++++.  ..+.++||||.++.    +...   +... +.  ..+||++..++.++...|+|+
T Consensus         6 esg~~-~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~   84 (119)
T d1qnzh_           6 QSGAE-LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFS   84 (119)
T ss_dssp             EECCC-EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEE
T ss_pred             eECCc-eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeec
Confidence            34433 67889999999999864  45689999997532    2221   1111 11  246999988788888999999


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                      +++++|+|+|+|+...
T Consensus        85 ~L~~eDsAvYYCA~~~  100 (119)
T d1qnzh_          85 RLTSDDSAVYYCAIHY  100 (119)
T ss_dssp             EECGGGCEEEEEEECS
T ss_pred             ccCccceeEEEEEEec
Confidence            9999999999998753

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-15  Score=90.93  Aligned_cols=84  Identities=12%  Similarity=-0.037  Sum_probs=62.0

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ..+......+.+.+|+++.|.|.+. +.+.+.|.|+|.+.+.           ..+. .    .....+|+|.+++.+|+
T Consensus         4 ~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~-----------~~~~-~----~~~~~~L~i~~v~~~D~   67 (90)
T d1gsma1           4 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-----------GAVQ-S----DTGRSVLTVRNASLSAA   67 (90)
T ss_dssp             EEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT-----------CCEE-E----ESSEEEEEECSCCGGGC
T ss_pred             cEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee-----------eeee-c----cCceeeEEcCccChhhC
Confidence            3444555568889999999999985 6778899998754221           1111 1    12467999999999999


Q ss_pred             EEEEEeec-CCCCeeEEEEece
Q psy14080         86 GTYECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        86 G~Y~C~~~-~~~~~s~~~~L~V  106 (113)
                      |.|.|.++ ..+..+..+.|.|
T Consensus        68 G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          68 GTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcEEEEEEEEE
Confidence            99999995 4456788888876

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.62  E-value=2.4e-15  Score=93.88  Aligned_cols=84  Identities=8%  Similarity=0.143  Sum_probs=60.2

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe--c-ceEE--cCCCCEEEEEeCCCCcEEEEEccC
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS--G-VLTY--TNDARFQVIHTDGSDDWNLQIKFL   80 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~--~-~~~~--~~~~R~~~~~~~~~~~~~L~I~~v   80 (113)
                      .++.+..+.+.+|++|+|+|... .....++||||.++   .+|..  + ....  ....|+.... .++..++|+|.++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EKKERFSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SSTTBCEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-ccCcEeeeEeccC
Confidence            35667778899999999999875 45578999999853   33322  1 1111  1235666553 4556789999999


Q ss_pred             CCCCCEEEEEeecC
Q psy14080         81 QKRDNGTYECQAQP   94 (113)
Q Consensus        81 ~~~D~G~Y~C~~~~   94 (113)
                      +++|+|+|+|+...
T Consensus        81 ~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          81 STNQTSMYLCASSS   94 (113)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccCCcccEEeeEcc
Confidence            99999999999864

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=8.3e-16  Score=96.48  Aligned_cols=81  Identities=17%  Similarity=0.055  Sum_probs=55.5

Q ss_pred             cceEEEecCCcEEEEEEEccCC---CCEEEEEecCCCe---EEEe--c-ceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWH---ILTS--G-VLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~---~l~~--~-~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +..+.+.+|++|+|+|.+....   ...|+||||..++   ++..  . .......+|+....+.+++.++|+|++++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            5667888999999999996543   2358999998532   2221  1 1111222333333334567899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|++.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999985

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=95.49  Aligned_cols=77  Identities=22%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|++++|.|++++.  .++.+.|+||.++.    +..+   +...+.  -..||.+..+..++.+.|+|++++++|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            57899999999999975  45789999998532    2222   222222  2479999988888889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|+..
T Consensus        91 AvYYCAr~   98 (117)
T d1c5db1          91 AIYFCTRE   98 (117)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEecc
Confidence            99999874

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-16  Score=94.32  Aligned_cols=86  Identities=13%  Similarity=-0.050  Sum_probs=60.0

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecC-CCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRR-DWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~-~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .+++++.+|+++.|.|.+.+.+.+.+.|++.. +...+.        +.+..... ......+|.|.+++.+|+|.|.|.
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP--------LKEIKVTS-SRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC--------EEEEEEEE-TTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec--------CCceeEEE-eecCceEEEECCCCHHHCeEEEEE
Confidence            56789999999999999999887766655443 222211        11111111 222356899999999999999999


Q ss_pred             ec-CCCC-eeEEEEecee
Q psy14080         92 AQ-PYTT-TSHSQNAPGL  107 (113)
Q Consensus        92 ~~-~~~~-~s~~~~L~V~  107 (113)
                      +. ..+. .+..+.|.|+
T Consensus        79 a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEEC
Confidence            94 5555 4666899884

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=99.62  E-value=8.3e-16  Score=96.59  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|+++.|.|++++.  .++.++|+||.++.    +...   +...+.  -.+||.+..+..++.+.|+|++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            57899999999999975  46789999998532    2221   222222  1469999987788889999999999999


Q ss_pred             EEEEEeecC
Q psy14080         86 GTYECQAQP   94 (113)
Q Consensus        86 G~Y~C~~~~   94 (113)
                      |+|+|+-..
T Consensus        91 AvYYCAr~~   99 (116)
T d1a2yb_          91 ARYYCARER   99 (116)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.62  E-value=2.4e-15  Score=95.12  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=63.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe--cceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS--GVLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~--~~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.|. ..+.+|+++.|.|++++.  ..+.++|+||.++.    +  +..  +...+.  -.+||.+..+...+.+.|+|
T Consensus         6 ~~sg~-~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~   84 (122)
T d1vgeh1           6 EQSGA-EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (122)
T ss_dssp             EECCC-EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCC-cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecc
Confidence            44443 468999999999999976  35789999998632    1  121  222332  25799999888888999999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++++|+|+|+|+..
T Consensus        85 ~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          85 SSLRPEDTAVYYCARD  100 (122)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeec
Confidence            9999999999999874

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=8.6e-16  Score=94.92  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             cCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe----cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080         20 LAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS----GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        20 ~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~----~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      +|+++.|.|++++.  .+..++|+||.+++    +..+    ++..+.  ..+||.+..+..++...|+|+++++||+|+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999975  46789999998532    2111    222222  247999987777888999999999999999


Q ss_pred             EEEeec
Q psy14080         88 YECQAQ   93 (113)
Q Consensus        88 Y~C~~~   93 (113)
                      |+|+..
T Consensus        81 YYCAr~   86 (103)
T d1oari_          81 YYCARM   86 (103)
T ss_dssp             EEEEEE
T ss_pred             EEeEEE
Confidence            999863

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8e-16  Score=94.83  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             eecceEEEecCCcEEEEEEEccC------CCCEEEEEecCC--CeEEEe-cce-EE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI------VKVRVSWVRRRD--WHILTS-GVL-TY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~------~~~~V~W~k~~~--~~~l~~-~~~-~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      ..++.+++.+|++|+|+|++...      ....+.|+|+..  ...+.. +.. ..  ...+|+.+..+...++++|+|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            34567889999999999999632      124678998763  222222 111 11  2357998876666788999999


Q ss_pred             cCCCCCCEEEEEeecCCC
Q psy14080         79 FLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~~~   96 (113)
                      +++.+|+|.|+|.+...+
T Consensus        85 ~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             SCCGGGCEEEEEEEECC-
T ss_pred             CCChhHCEEEEEEEEeCC
Confidence            999999999999996543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=99.61  E-value=2.7e-15  Score=93.92  Aligned_cols=78  Identities=19%  Similarity=0.276  Sum_probs=60.7

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cc-eEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GV-LTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~-~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  ..+.++||||.++.    +  +.. +. ..+.  ..+||.+..+..++.+.|+|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            367899999999999976  45789999998532    2  111 22 2222  24799999888888999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999874

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=99.61  E-value=1.9e-15  Score=96.42  Aligned_cols=76  Identities=17%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             EEecCCcEEEEEEEccCC----CCEEEEEecCCC----eEEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW----HILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~----~~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+.+|++++|.|++++..    .+.++||||.++    .+...   +...+.  -.+||.+..+..++.+.|+|++++++
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            678899999999998642    357899999742    22222   222222  24699998877788899999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+.
T Consensus        91 DtAvYyCAr   99 (126)
T d1etzb1          91 DTATYHCAR   99 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             ccceEEEEE
Confidence            999999986

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=99.61  E-value=2.1e-15  Score=95.14  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             EEEecCCcEEEEEEEccCC---CCEEEEEecCCCe----EEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWH----ILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~----~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++..   ++.++|+||.++.    +...   +...+.  -.+||.+..+..++.+.|+|++++.|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            3678999999999999753   3679999998642    2111   222222  24799999888889999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999863

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.61  E-value=1.8e-15  Score=94.56  Aligned_cols=82  Identities=15%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEE-Ee--cceEE--cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHIL-TS--GVLTY--TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l-~~--~~~~~--~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|.|.... ....|+||||.+   +..| ..  +....  ....||.+.. ..+..++|+|++++
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ-FDDYHSEMNMSALE   82 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE-CTTSCEEEECCSCC
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc-CCCCeEEEEecccC
Confidence            46677788999999999998653 456899999984   2333 22  11111  1246888764 45567899999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      ++|+|+|+|+..
T Consensus        83 ~~Dsa~YyCa~~   94 (113)
T d1nfdb1          83 LEDSAMYFCASS   94 (113)
T ss_dssp             GGGCEEECEEEE
T ss_pred             cCCceeEEEEee
Confidence            999999999985

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.61  E-value=3e-15  Score=96.16  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             EEecCCcEEEEEEEccCC----CCEEEEEecCCC----eEEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW----HILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~----~~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+.+|++++|.|++++..    ...++||||.++    .+...   +...+.  -.+||++..+..++.+.|+|++++++
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            578899999999998643    247999999852    23222   222221  25799998877788899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=99.61  E-value=5.5e-16  Score=96.20  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             EecCCcEEEEEEEccC--CCCEEEEEecCCC----eEEEe---cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         18 GFLAVFSYSDKTVRDI--VKVRVSWVRRRDW----HILTS---GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~--~~~~V~W~k~~~~----~~l~~---~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      +.+|+++.|.|++++.  .++.++|+||.++    .+...   +...+.  ...||.+..+..++.+.|+|++++.+|+|
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            5789999999999864  4678999999853    22222   222222  24799999877888899999999999999


Q ss_pred             EEEEeecC
Q psy14080         87 TYECQAQP   94 (113)
Q Consensus        87 ~Y~C~~~~   94 (113)
                      +|+|+...
T Consensus        85 vYyCA~~~   92 (107)
T d1sjva_          85 VYYCYTHY   92 (107)
T ss_dssp             EEEEEECC
T ss_pred             eeeEeccC
Confidence            99998743

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.61  E-value=3e-15  Score=94.06  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++..  .+.+.|+||.++.    +  +.. + +..+.  -..||.+..+..++...|+|++++++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4788999999999999764  6789999998532    2  111 2 22332  25799999887888999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+-.
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999864

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.61  E-value=3.2e-15  Score=94.65  Aligned_cols=78  Identities=17%  Similarity=0.161  Sum_probs=59.8

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|++++|.|++++.  ..+.++||||.++.    +...   + ...+.  -.+||.+..++.++...|+|++++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            358899999999999865  46789999998532    2221   1 12221  24699998777778899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999863

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=99.60  E-value=4.3e-15  Score=92.30  Aligned_cols=78  Identities=19%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----EEEe---c--ce-EEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----ILTS---G--VL-TYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~l~~---~--~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+.+|+++.|.|++++..  ...++|+||.++.    +-..   +  .. .+.  -..||++..+..++...|+|++++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            4688999999999999753  5689999998642    1111   1  11 122  246999998888888999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      ++|+|+|+|+-.
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999864

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=99.60  E-value=3.5e-15  Score=93.95  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++..  ++.++|+||.++.    +  +.. + ...+.  -..||.+..+..++...|+|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            4688999999999999864  5689999998642    2  111 1 22222  24799999877788899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DtAvYYCAr~   99 (118)
T d2fbjh1          90 DTALYYCARL   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeEe
Confidence            9999999974

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=99.60  E-value=1.6e-15  Score=96.26  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=57.7

Q ss_pred             EEecCCcEEEEEEEccCC----CCEEEEEecCCC---e-EEEe---cceEEcC--CCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW---H-ILTS---GVLTYTN--DARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~---~-~l~~---~~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .+.+|++++|.|++++..    .+.+.||||.++   . +...   +...+..  ..||.+..+..++.+.|+|++++++
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            578899999999998642    357899999753   2 2111   2222221  3699998777778899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999864

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.60  E-value=5.6e-15  Score=92.59  Aligned_cols=78  Identities=14%  Similarity=0.196  Sum_probs=60.9

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ecce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SGVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  ..+.++|+||.++.    +  +. .+.. .+.  -.+||.+..+...+...|+|++++.|
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            578899999999999975  45789999998642    1  12 1222 222  24699999888888999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+-.
T Consensus        90 DtAvYYCAr~   99 (116)
T d1mjuh1          90 DSAVYYCANK   99 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEccc
Confidence            9999999863

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.60  E-value=4.9e-15  Score=93.22  Aligned_cols=83  Identities=14%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe--cceEEcC--CCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS--GVLTYTN--DARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~--~~~~~~~--~~R~~~~~~~~~~~~~L~I   77 (113)
                      .+.|. ..+.+|+++.|.|++++..  ++.++|+||.++.    +  +..  +...+..  ..||.+..+..++...|+|
T Consensus         5 ~esg~-~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~   83 (118)
T d2jelh1           5 AQSGP-ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMEL   83 (118)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEE
T ss_pred             EeECC-ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecc
Confidence            34443 3578999999999999753  5789999998642    2  111  1222321  4799999877788899999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++.+|+|+|+|+-.
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          84 ARLTSEDSAIYYCARV   99 (118)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccccCcceeeeEEEe
Confidence            9999999999999763

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.60  E-value=5.3e-15  Score=92.93  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ecce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SGVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +. .+.. .+.  -.+||.+..+...+...|+|++++++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            356889999999999975  46789999998532    1  12 1222 222  24799999888888899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999874

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.59  E-value=5.5e-15  Score=92.93  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             eecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|. ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. + +..+.  -..||.+..+...+...|+|+
T Consensus         6 esg~-~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~   84 (118)
T d1nlbh1           6 QSGP-ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQIN   84 (118)
T ss_dssp             ECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEEC
T ss_pred             eECC-ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeee
Confidence            3443 357999999999999975  35789999998642    2  111 1 22222  257999998777888999999


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      +++.+|+|+|+|+-.
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1nlbh1          85 SLKNEDTATYFCARF   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ecccCcceEEEEeee
Confidence            999999999999864

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=99.59  E-value=7.5e-15  Score=92.61  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=59.7

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCeEE----Ee---cc--eE-Ec--CCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHIL----TS---GV--LT-YT--NDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l----~~---~~--~~-~~--~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+.+|+++.|.|++++.  ..+.++|+||.++.-|    .+   +.  .+ +.  -..||.+..+..++.+.|+|++++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            57899999999999965  4678999999864311    11   11  11 22  1369999988888889999999999


Q ss_pred             CCCEEEEEeec
Q psy14080         83 RDNGTYECQAQ   93 (113)
Q Consensus        83 ~D~G~Y~C~~~   93 (113)
                      +|+|+|+|+..
T Consensus        91 eDtAvYYCA~~  101 (120)
T d1dlfh_          91 EDTGIYYCTGI  101 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEeeEe
Confidence            99999999874

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.59  E-value=8.1e-15  Score=92.17  Aligned_cols=83  Identities=12%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe---cc-eEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS---GV-LTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~---~~-~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      ++.|. ..+.+|+++.|.|++++.  .++.++|+||.++.    +...   +. ..+.  -..||.+..+...+...|+|
T Consensus         5 ~qsg~-~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           5 QQSGT-VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeECC-ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            34443 467899999999999975  46789999998643    2111   11 2222  14599998887888899999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++.+|+|+|+|+-.
T Consensus        84 ~~L~~eDtAvYYCAr~   99 (117)
T d1mfah1          84 SSLTSEDSAVYYCTRG   99 (117)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            9999999999999864

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.59  E-value=4e-15  Score=94.13  Aligned_cols=77  Identities=16%  Similarity=0.252  Sum_probs=59.8

Q ss_pred             EEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEec--ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTSG--VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~~--~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++..  .+.++|+||.++.    +  +..+  ...+.  -.+||.+..+..++...|+|++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            578899999999999753  5789999998532    2  1111  22222  247999998878888999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999864

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.59  E-value=3.5e-15  Score=92.95  Aligned_cols=83  Identities=7%  Similarity=0.020  Sum_probs=58.4

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCC---CeEEEe-c---ceEE-cCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRD---WHILTS-G---VLTY-TNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~---~~~l~~-~---~~~~-~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ++.+..+++.+|++|+|.|.... ....|+||||.+   +.+|.. .   .... ....++.... .+...++|+|.+++
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR-IRTEHFPLTLESAR   79 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC-SSSSBCCEEBSSCC
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec-CCCCceEeeecccc
Confidence            45566788999999999999764 457899999984   333332 1   1111 1234555432 45567899999999


Q ss_pred             CCCCEEEEEeecC
Q psy14080         82 KRDNGTYECQAQP   94 (113)
Q Consensus        82 ~~D~G~Y~C~~~~   94 (113)
                      ++|+|+|+|+...
T Consensus        80 ~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          80 PSHTSQYLCASSE   92 (112)
T ss_dssp             TTTCSEEEEEEEC
T ss_pred             ccccccEEEEEec
Confidence            9999999999853

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.59  E-value=4.8e-15  Score=93.48  Aligned_cols=79  Identities=18%  Similarity=0.271  Sum_probs=61.2

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EE-ecceE-Ec--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LT-SGVLT-YT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~-~~~~~-~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++..  ++.++|+||.++.    +  +. .+... +.  -..||.+..+..++...|+|++++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            3578899999999999754  5789999998532    1  12 12222 22  24799999888889999999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1rz7h1          90 DTAVYYCAADP  100 (119)
T ss_dssp             GCEEEEEEECT
T ss_pred             cceEEEEeecC
Confidence            99999998743

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=99.59  E-value=4.3e-15  Score=93.84  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=60.3

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEec--ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTSG--VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~~--~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +..+  ...+.  -..||.+..+..++...|+|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            367899999999999975  46789999998532    2  1111  22222  24699999777788899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999974

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.5e-15  Score=94.45  Aligned_cols=80  Identities=21%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             cceEEEecCCcEEEEEEEccCCC---CEEEEEecCCC---eEEEe----cceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVK---VRVSWVRRRDW---HILTS----GVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~---~~V~W~k~~~~---~~l~~----~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +..+.+.+|++|+|+|.+.....   ..|+||||.++   +++..    +......+.++ ...+.+++.++|+|++++.
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI-CTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCS-CCCCBCSSEEEEEECSCCG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcE-EeEcCCCCEEEEEeecccc
Confidence            55677888999999999975432   36999999853   33321    11111112232 2233566789999999999


Q ss_pred             CCCEEEEEeec
Q psy14080         83 RDNGTYECQAQ   93 (113)
Q Consensus        83 ~D~G~Y~C~~~   93 (113)
                      +|+|+|+|++.
T Consensus        85 ~Dsa~YyCa~~   95 (118)
T d1i8lc_          85 MDTGLYICKVE   95 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeEe
Confidence            99999999985

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.59  E-value=7e-15  Score=93.34  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe-cc-eEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS-GV-LTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~-~~-~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      -.+.+|+++.|.|++++..  .+.++|+||.++.    +  +.. +. ..+.  -.+||.+..+..++...|+|++++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            3678999999999999753  5789999998532    1  111 21 2222  24799999888889999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999964

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=99.59  E-value=3.8e-15  Score=94.34  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=60.3

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .+..+.|+||.++.    +  +.. + +..+.  -.+||.+..+..++.+.|+|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            357899999999999975  45789999998532    2  111 2 22222  25799999877788899999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DTAvYYCAr~   99 (122)
T d1bz7b1          90 DTAIYYCTRG   99 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999999874

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.59  E-value=4.6e-15  Score=93.54  Aligned_cols=83  Identities=16%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEec--ceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTSG--VLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~~--~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .+.|. ..+.+|+++.|.|++++.  .++.+.|+||.++.    +  +..+  ...+.  -..||.+..+..++.+.|+|
T Consensus         5 ~esG~-~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~   83 (119)
T d1eapb1           5 QESGT-ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQL   83 (119)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EeECC-ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeee
Confidence            34443 357899999999999975  35789999998532    1  1211  22222  24799999877788899999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++++|+|+|+|+..
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          84 NSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             ecccCCcceEEEEEEe
Confidence            9999999999999864

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=99.58  E-value=8.5e-15  Score=93.77  Aligned_cols=79  Identities=15%  Similarity=0.255  Sum_probs=61.3

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.+.|+||.++.    +  +.. + +..+.  -.+||.+..+...+...|+|++++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            367899999999999975  46789999998532    2  121 1 22232  24799999877788899999999999


Q ss_pred             CCEEEEEeecC
Q psy14080         84 DNGTYECQAQP   94 (113)
Q Consensus        84 D~G~Y~C~~~~   94 (113)
                      |+|+|+|+...
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999999853

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.58  E-value=7.9e-15  Score=93.31  Aligned_cols=78  Identities=10%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ec-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SG-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.+++    +  +. .+ ...+.  -.+||.+..+...+...|+|++++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            467899999999999975  35789999998642    2  11 11 11221  24799998888888999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+..
T Consensus        90 DtAvYYCAR~   99 (125)
T d1rihh1          90 DSAVYYCARE   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999863

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=99.58  E-value=4.4e-15  Score=94.79  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=58.7

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEEe--------cc-eEEc--CCCCEEEEEeCCCCcEEEEEcc
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILTS--------GV-LTYT--NDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~~--------~~-~~~~--~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .+.+|+++.|.|++++.  .++.++||||.++.    +-.+        +. ..+.  -.+||.+..++.++...|+|++
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            56789999999999975  46789999998532    2111        11 1111  1369999887778899999999


Q ss_pred             CCCCCCEEEEEeec
Q psy14080         80 LQKRDNGTYECQAQ   93 (113)
Q Consensus        80 v~~~D~G~Y~C~~~   93 (113)
                      ++++|+|+|+|+..
T Consensus        91 l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          91 LKPEDTAVYYCAAK  104 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccceeEEEEEEE
Confidence            99999999999863

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.8e-15  Score=90.78  Aligned_cols=76  Identities=14%  Similarity=0.090  Sum_probs=55.2

Q ss_pred             eecceEEEecCCcEEEEEEEccCCC-CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIVK-VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~~-~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....+++.+|++++|.|.+.+.+. +.|.|+|.+.. +        ..+.|....     .+.+|.|.+++.+|+|.|+
T Consensus        11 ~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~-l--------~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1          11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA-A--------GSHPSRWAG-----MGRRLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSS-S--------SCCCEEEEE-----ESSEEEECSCCGGGCEEEE
T ss_pred             eCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccc-c--------cceeeEEec-----CCCEEEECCCChhcCEEEE
Confidence            3456789999999999999998764 58999995421 1        123344332     1348999999999999999


Q ss_pred             EeecCCCCeeE
Q psy14080         90 CQAQPYTTTSH  100 (113)
Q Consensus        90 C~~~~~~~~s~  100 (113)
                      |.+......+.
T Consensus        77 C~a~n~~~~t~   87 (93)
T d1n26a1          77 CYRAGRPAGTV   87 (93)
T ss_dssp             EESSSSCSCEE
T ss_pred             EEECCccccEE
Confidence            99965444443

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=99.58  E-value=7.9e-15  Score=92.30  Aligned_cols=83  Identities=13%  Similarity=0.186  Sum_probs=63.1

Q ss_pred             EeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEec--ceEEcC--CCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTSG--VLTYTN--DARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~~--~~~~~~--~~R~~~~~~~~~~~~~L~I   77 (113)
                      .+.|. ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +..+  ...+..  ..||++..+..++...|+|
T Consensus         5 ~esG~-~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i   83 (118)
T d1ct8b1           5 LESGA-VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQF   83 (118)
T ss_dssp             EECCC-EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEE
T ss_pred             EeECC-ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecc
Confidence            34443 478899999999999975  46799999998642    2  2221  222222  4699998877888899999


Q ss_pred             ccCCCCCCEEEEEeec
Q psy14080         78 KFLQKRDNGTYECQAQ   93 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~   93 (113)
                      ++++.||+|+|+|+-.
T Consensus        84 ~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          84 SSLTTEDSAIYYCARY   99 (118)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeee
Confidence            9999999999999874

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.9e-15  Score=91.39  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             ceEEEecCCcEEEEEEEc-cCC-CCEEEEEecCCCeEEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         14 QISTGFLAVFSYSDKTVR-DIV-KVRVSWVRRRDWHILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~-~~~-~~~V~W~k~~~~~~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ..+.+.+|++|+|+|... ... ...|.|+|.. ..+...  +......+.|+.+.     .+++|+|++++.+|+|.|.
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~-~~i~~~~~~~~~~~~~~~~~~~-----~ngSL~I~nl~~~DsG~Y~   76 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYN   76 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEEC-----TTSCEEESSCCGGGCEEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccc-cceeEEccCCccccCCCeEEEC-----CCccEEEeCCCHHHCEEEE
Confidence            346788899999999643 222 2579999853 222222  22233446677664     4678999999999999999


Q ss_pred             Eeec-CCCCe--eEEEEeceec
Q psy14080         90 CQAQ-PYTTT--SHSQNAPGLG  108 (113)
Q Consensus        90 C~~~-~~~~~--s~~~~L~V~g  108 (113)
                      |.+. ..+..  ++.++|.|.+
T Consensus        77 c~v~~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          77 VTVYSTNGTRILNKALDLRILE   98 (98)
T ss_dssp             EEEEETTCCEEEEEEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEEEEEEEEC
Confidence            9994 44543  7889998863

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=92.92  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             eEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ec-ceEEc--CCCCEEEEEeCCCCcEEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SG-VLTYT--NDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~-~~~~~--~~~R~~~~~~~~~~~~~L~   76 (113)
                      +++.|. ..+.+|+++.|.|++++.  .+..++|+||.++.    +  +. .+ +..+.  -..||.+..+...+...|+
T Consensus         3 L~esg~-~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~   81 (130)
T d1rhhb1           3 LEQSGA-EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYME   81 (130)
T ss_dssp             EEECCC-EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EeccCC-ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEE
Confidence            344444 357899999999999975  46789999998632    2  11 12 22222  2479999988888899999


Q ss_pred             EccCCCCCCEEEEEeec
Q psy14080         77 IKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~   93 (113)
                      |++++.||+|+|+|+-.
T Consensus        82 ~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          82 LTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eeccCCCCcEEEEEEee
Confidence            99999999999999864

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.9e-15  Score=91.78  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             eEEEecCCcEEEEEEEccCC----CCEEEEEecCCC-----e-EEE-ecceEEc-----CCCCEEEEEe-CCCCcEEEEE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIV----KVRVSWVRRRDW-----H-ILT-SGVLTYT-----NDARFQVIHT-DGSDDWNLQI   77 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~----~~~V~W~k~~~~-----~-~l~-~~~~~~~-----~~~R~~~~~~-~~~~~~~L~I   77 (113)
                      .+.+.+|++|+|+|.+...+    ...|.|+++...     . ++. .......     -.+|+.+..+ ...++++|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            47889999999999997432    246899987531     1 222 2222221     1257776432 2346789999


Q ss_pred             ccCCCCCCEEEEEeecCC-CCeeEEEEecee
Q psy14080         78 KFLQKRDNGTYECQAQPY-TTTSHSQNAPGL  107 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~-~~~s~~~~L~V~  107 (113)
                      ++++.+|+|.|+|.+... ...+..++|.|+
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999643 456778888875

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=99.58  E-value=6.4e-15  Score=92.69  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----EEE--ec-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----ILT--SG-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~l~--~~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|+++.|.|++++.  .++.++|+||.++.    +..  .+ ...+.  ...||.+..+..++...|+|++++.+|+
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            57899999999999975  46799999998532    111  12 22222  2469999988888889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|+-.
T Consensus        91 A~YyCAr~   98 (118)
T d1lo4h1          91 AIYYCARG   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeccc
Confidence            99999874

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=99.58  E-value=8.9e-15  Score=92.98  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  ..+.+.|+||.++.    +  +.. +.. .+.  -..||.+..+..++...|+|++++++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            368899999999999975  35789999998532    2  111 212 222  25799999888888999999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+-
T Consensus        90 DtavYYCAr   98 (126)
T d1dfbh1          90 DMALYYCVK   98 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEe
Confidence            999999985

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=99.57  E-value=3.7e-15  Score=94.41  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=59.6

Q ss_pred             EEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe-cce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS-GVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~-~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++..  ++.+.|+||.++.    +  +.. +.. .+.  -.+||.+..+...+...|+|++++.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            678999999999999753  5789999998642    2  111 222 222  247999998777788999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        91 tAvYYCAr~   99 (123)
T d1mqkh_          91 TAMYYCVRH   99 (123)
T ss_dssp             CEEEEEEEE
T ss_pred             ccceeEEec
Confidence            999999874

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.1e-15  Score=91.52  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      |+.+.... ...++.+|+++.|.|.+. +.+.+.|.|+|.. ..+.........  .+.++...    .....|.|.+++
T Consensus         2 PP~~p~~~-~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~I~~v~   75 (110)
T d1f97a2           2 PPSKPTIS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDG-ISMLTADAKKTRAFMNSSFTID----PKSGDLIFDPVT   75 (110)
T ss_dssp             CCCCCEEE-CCSEEETTSCEEEEEECSCCBSCCEEEEEETT-EESBC-----CBSCSSSCEEEC----TTTCCEEESSCC
T ss_pred             CCccceeC-CCCEEecCCeEEEEEEeecCCCCCEEEEEeCC-eEecCCCceeEEeecCceEEEe----ecccceEECCCC
Confidence            44444322 234688999999999985 6788899999843 211111111111  12233322    245689999999


Q ss_pred             CCCCEEEEEeec-CCCCe--eEEEEeceec
Q psy14080         82 KRDNGTYECQAQ-PYTTT--SHSQNAPGLG  108 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~~--s~~~~L~V~g  108 (113)
                      .+|+|.|+|.+. ..+..  +..++|.|..
T Consensus        76 ~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          76 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             GGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            999999999995 44533  4567777754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=92.14  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             eecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EE-ecceE-Ec--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LT-SGVLT-YT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~-~~~~~-~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|. ..+.+|+++.|.|++++..  .+.++|+||.++.    +  +. .+..+ +.  -.+||.+..+..++...|+|+
T Consensus         6 esG~-~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           6 ESGA-EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             ECCC-EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECC-ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            3443 3578999999999999764  5689999998532    2  12 22222 22  257999998888889999999


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      +++.+|+|+|+|+..
T Consensus        85 sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGV   99 (128)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccccCceEEEEeEE
Confidence            999999999999963

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=99.57  E-value=4.9e-15  Score=94.10  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cceE-Ec--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GVLT-YT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~~~-~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. +..+ +.  -..||.+..+..++...|+|++++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            57889999999999975  46789999998532    2  221 2222 22  257999998877889999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999873

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.57  E-value=1.1e-14  Score=92.57  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=60.8

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ecce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SGVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +. .+.. .+.  -.+||.+..+..++...|+|++++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            467899999999999975  46789999998642    1  12 2222 222  25899999888889999999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+-
T Consensus        89 DTAvYYCAr   97 (126)
T d1lmka1          89 DSAVYYCAR   97 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999985

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.57  E-value=1.1e-14  Score=91.86  Aligned_cols=77  Identities=12%  Similarity=0.192  Sum_probs=60.6

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++.  ..+.++|+||.++.    +  +.. + +..+.  -..||.+..+..++.+.|+|++++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            58899999999999975  35789999998642    1  221 1 22232  247999998888889999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+-.
T Consensus        91 TAvYYCAr~   99 (120)
T d1ad9b1          91 TAFYFCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEc
Confidence            999999863

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.57  E-value=2.1e-14  Score=91.05  Aligned_cols=82  Identities=13%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             EeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .+.|. ..+.+|+++.|.|++++..  .+.++|+||.++.    +  +.. + +..+.  -.+||.+..+...+...|+|
T Consensus         5 ~esg~-~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~   83 (124)
T d2b1hh1           5 EQSGA-EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQW   83 (124)
T ss_dssp             EECCC-EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEE
T ss_pred             eeECC-ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEee
Confidence            34444 4779999999999999754  5689999998532    2  121 1 22222  24799999888888899999


Q ss_pred             ccCCCCCCEEEEEee
Q psy14080         78 KFLQKRDNGTYECQA   92 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~   92 (113)
                      ++++++|+|+|+|+-
T Consensus        84 ~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          84 SSLKPSDTALYYCAR   98 (124)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             eccccccceEEEEee
Confidence            999999999999975

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=99.57  E-value=6.4e-15  Score=93.82  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=59.3

Q ss_pred             EEecCCcEEEEEEEccCC---CCEEEEEecCCCe----E--EEe-cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV---KVRVSWVRRRDWH----I--LTS-GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~---~~~V~W~k~~~~~----~--l~~-~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++..   .+.++|+||.++.    +  +.. +...+.  -.+||.+..+..++.+.|+|++++++|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            578899999999999753   3689999998542    2  111 232232  247999988888889999999999999


Q ss_pred             CEEEEEee
Q psy14080         85 NGTYECQA   92 (113)
Q Consensus        85 ~G~Y~C~~   92 (113)
                      +|+|+|+.
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999985

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=99.57  E-value=9.2e-15  Score=93.04  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=57.5

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. + +..+.  ..+||.+..+..++.+.|+|++++++|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            57889999999999974  46789999998532    2  121 1 22222  246999998777888999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        90 TAvYYCAr~   98 (126)
T d1rjca1          90 TAMYYCAAD   98 (126)
T ss_dssp             CEEEEEEEC
T ss_pred             CceeEEEee
Confidence            999999974

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.56  E-value=2.3e-14  Score=91.14  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ecce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SGVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +. .+.. .+.  -..||.+..+...+.+.|+|++++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            357889999999999975  46789999998642    2  12 1222 222  25799999888889999999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+-
T Consensus        90 DTavYYCAR   98 (127)
T d2fx7h1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999986

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.56  E-value=4.2e-16  Score=93.49  Aligned_cols=81  Identities=15%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      -+++++.+|++|.|.|.++ .+.+.|.|||..  ..+       ..++|+.+..  +++..+|.|.+++++|+|.|.|.+
T Consensus         8 l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g--~~i-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIELS-EPDVHGQWKLKG--QPL-------TASPDCEIIE--DGKKHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             CCCEEEETTSCCCEEEBCS-SSSCCCBCCSSS--CCC-------CSSSSCEEEE--CSSCEEEECCSCCSCCCSEECCBC
T ss_pred             CcCEEEeCCCcEEEEEEEC-CCCcEEEEEEee--eec-------ccceeEEEEe--eceeEEEEEcCCChhcCEEEEEEE
Confidence            4678999999999999986 577899999843  222       2467888864  456789999999999999999998


Q ss_pred             cCCCCeeEEEEeceec
Q psy14080         93 QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g  108 (113)
                      ...   ...+.|.|++
T Consensus        76 ~n~---~~sa~l~V~e   88 (89)
T d1tiua_          76 ANA---KSAANLKVKE   88 (89)
T ss_dssp             SSC---BCCEEEEEEC
T ss_pred             Cce---EEEEEEEEEE
Confidence            442   2346777764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.56  E-value=4.4e-15  Score=88.05  Aligned_cols=82  Identities=12%  Similarity=-0.010  Sum_probs=61.6

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +|+.+++..+...++.+|++++|.|.+.+.+.+.+.|++.+ +..+.               .    ...+|.|.+++.+
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~-~~~~~---------------~----~~~~l~i~~~~~~   62 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN-ESLIS---------------S----QASSYFIDAATVN   62 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEET-TEEEE---------------S----SCSEEEESSCCGG
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeee-ceeee---------------e----cceeeEecCCccc
Confidence            58888888888889999999999999998877655554333 22221               0    2337999999999


Q ss_pred             CCEEEEEeecCCCCeeEEEEece
Q psy14080         84 DNGTYECQAQPYTTTSHSQNAPG  106 (113)
Q Consensus        84 D~G~Y~C~~~~~~~~s~~~~L~V  106 (113)
                      |+|.|+|++.. ...|..++|.|
T Consensus        63 d~G~Y~C~a~~-s~~S~~v~L~V   84 (84)
T d1fnla1          63 DSGEYRCQTNL-STLSDPVQLEV   84 (84)
T ss_dssp             GCEEEEEECSS-SCCCCCEEEEE
T ss_pred             CCEEEEEEccC-CCccccEEEEC
Confidence            99999999853 34566778776

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=99.56  E-value=1.1e-14  Score=92.04  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=60.2

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCe----EEEe---c---ceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWH----ILTS---G---VLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~----~l~~---~---~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+.+|+++.|.|++++..  .+.++|+||.++.    +-.+   +   ...+.  -..||.+..+..++.+.|+|++++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            3688999999999999753  5689999998532    2111   1   11222  247999998888888999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      ++|+|+|+|+..
T Consensus        90 ~eDTAvYYCar~  101 (122)
T d1q9rb1          90 AEDSATYYCARD  101 (122)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEEec
Confidence            999999999974

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.55  E-value=1.4e-14  Score=92.12  Aligned_cols=77  Identities=10%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ec-ceEEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SG-VLTYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~-~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +. .+ +..+.  -..||.+..+..++...|+|++++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            478899999999999975  35789999998532    2  11 12 22222  24799999877788899999999999


Q ss_pred             CCEEEEEee
Q psy14080         84 DNGTYECQA   92 (113)
Q Consensus        84 D~G~Y~C~~   92 (113)
                      |+|+|+|+-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999984

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=92.67  Aligned_cols=82  Identities=11%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             eecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cce-EEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GVL-TYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~~-~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|. ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. +.. .+.  -..||.+..+..++...|+|+
T Consensus         6 esg~-~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           6 QSGA-EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             ECCC-EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eECC-ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            3443 357899999999999975  46789999998532    2  221 222 222  247999998888889999999


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      +++.||+|+|+|+-.
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999863

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=99.55  E-value=1.6e-14  Score=92.38  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             EEecCCcEEEEEEEccCC--CCEEEEEecCCCeE---E-Ee------cceEEc--CCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080         17 TGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHI---L-TS------GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~---l-~~------~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      .+.+|+++.|.|++++..  .+.++|+||.++.-   + .+      ++..+.  -..||.+..+..++...|+|+++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            678999999999999753  57899999985421   1 11      112222  2479999988788899999999999


Q ss_pred             CCCEEEEEeec
Q psy14080         83 RDNGTYECQAQ   93 (113)
Q Consensus        83 ~D~G~Y~C~~~   93 (113)
                      +|+|+|+|+-.
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999864

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=91.64  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=60.9

Q ss_pred             EEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EE-ecce-EEc--CCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LT-SGVL-TYT--NDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~-~~~~-~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +. .+.. .+.  -..||.+..+...+...|+|++++.|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            358899999999999975  46789999998642    2  11 2222 222  24799999888888999999999999


Q ss_pred             CCEEEEEeec
Q psy14080         84 DNGTYECQAQ   93 (113)
Q Consensus        84 D~G~Y~C~~~   93 (113)
                      |+|+|+|+-.
T Consensus        89 DtA~YYCAr~   98 (133)
T d1rzfh1          89 DTAVYYCASN   98 (133)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEeeec
Confidence            9999999874

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=99.54  E-value=2e-14  Score=90.99  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             eecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-c-ceEEc--CCCCEEEEEeCCCCcEEEEEc
Q psy14080         11 AFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-G-VLTYT--NDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus        11 ~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~-~~~~~--~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.|. ..+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. + +..+.  -.+||.+..+...+...|+|+
T Consensus         6 esG~-~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           6 QSGP-ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             ECCC-EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             eeCC-ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            4443 357899999999999976  45789999998532    2  221 2 22222  247999998888889999999


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      +++.+|+|+|+|+-.
T Consensus        85 sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          85 SLKSEDSAVYFCTRW   99 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCCCcceEEEeccc
Confidence            999999999999863

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.54  E-value=2.3e-14  Score=89.20  Aligned_cols=83  Identities=12%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             eeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCC---eEEEe----cceEE--cCCCCEEEEEeCCCCcEEEEEc
Q psy14080          8 ILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDW---HILTS----GVLTY--TNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         8 i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~---~~l~~----~~~~~--~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      +.++.+..+.+.+|++|+|+|.+++.....++||||.++   ..|..    +....  ....||.....   ++.+|.|.
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~l~l~   79 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTELRLQ   79 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETTEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc---cccEEEEe
Confidence            346667778899999999999998777778999999842   33322    11111  12468877642   34578899


Q ss_pred             cCCCCCCEEEEEeec
Q psy14080         79 FLQKRDNGTYECQAQ   93 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~   93 (113)
                      .++++|+|+|+|...
T Consensus        80 ~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          80 VANMSQGRTLYCTCS   94 (112)
T ss_dssp             EESCCSCEEEEEEEE
T ss_pred             cCCccCCccEEEEEe
Confidence            999999999999974

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=99.54  E-value=2.6e-14  Score=91.02  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=59.9

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cc-eEEc--CCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GV-LTYT--NDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~-~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++.  .+..++|+||.++.    +  +.. +. ..+.  -..||.+..+..++...|+|++++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            57889999999999975  45789999998532    2  111 21 2222  247999998888889999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+..
T Consensus        91 TA~YYCAr~   99 (127)
T d2fb4h1          91 TGVYFCARD   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             eeEEEEEEe
Confidence            999999863

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=6.6e-15  Score=92.93  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=60.4

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecCCCeE------EEe----cceEEc--CCCCEEEEEeCCCCcEEEEEccCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHI------LTS----GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~------l~~----~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      ..+.+|+++.|.|++++..  .+.++|+||.++.-      +..    +...+.  -..||.+..+...+...|+|++++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            4689999999999999764  56899999985421      111    112222  257999998888889999999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      .+|+|+|+|+-.
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999864

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.2e-15  Score=95.96  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCCe----E--EEe-cceEEc--CCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWH----I--LTS-GVLTYT--NDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~----~--l~~-~~~~~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      .+.+|+++.|.|++++.  .++.++|+||.++.    +  +.. +...+.  -.+||.+..+..++...|+|++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            46789999999999975  46789999998532    2  111 222222  1379999988778889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|+..
T Consensus        91 AvYyCAr~   98 (116)
T d1fn4b1          91 GTYYCTRD   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99999863

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=4.7e-15  Score=91.20  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             ceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         14 QISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+++.+|+++.|.|.+ .+.+.+.|.|+|......+       ..+.|+....    .+.+|.|.+++.+|+|.|+|.+
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~-------~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a   80 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI-------PADGRRFVSQ----TTGNLYIAKTEASDLGNYSCFA   80 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBC-------CCCSSEEECT----TTCCEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccc-------cccceeeeec----CCCEEeecccccccCcEEEEEE
Confidence            45789999999999997 5778889999985432221       1344544431    3558999999999999999999


Q ss_pred             c-CCCCeeEE
Q psy14080         93 Q-PYTTTSHS  101 (113)
Q Consensus        93 ~-~~~~~s~~  101 (113)
                      . ..+..+..
T Consensus        81 ~N~~g~~~~~   90 (105)
T d1cs6a2          81 TSHIDFITKS   90 (105)
T ss_dssp             EEEETTEEEE
T ss_pred             EECCCCEEEE
Confidence            4 44554443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=89.41  Aligned_cols=84  Identities=12%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             eEEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee-
Q psy14080         15 ISTGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA-   92 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-   92 (113)
                      .+.+.+|+++.|+|.+. +.+.+.|.|||.+....+..     ....|+...      ..+|.|.+++.+|+|.|+|.+ 
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~-----~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~   79 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-----EQASRIHQH------KEKLWFVPAKVEDSGHYYCVVR   79 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCC-----CTTSSEEEE------TTEEEETTCCGGGCEEEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCccccccc-----ccceEEecc------CCEEEeccceecCCEEEEEEEE
Confidence            35677899999999985 66889999998653222110     123344332      458999999999999999999 


Q ss_pred             cCCCCeeEEEEeceecc
Q psy14080         93 QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        93 ~~~~~~s~~~~L~V~g~  109 (113)
                      +..+.....++|.|+..
T Consensus        80 N~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          80 NSSYCLRIKISAKFVEN   96 (101)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             CCCCeEEEEEEEEEEeC
Confidence            56677788899999864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=6e-15  Score=88.56  Aligned_cols=85  Identities=15%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
                      ++....++++.+|++++|.|.+.+.+.+ .|.|+|..  ..+.      ..+.++...    ..+.+|.|.+++.+|+|.
T Consensus         5 i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g--~~l~------~~~~~~~~~----~~~~~L~i~~v~~~D~G~   72 (94)
T d1biha1           5 LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDG--KSYN------WQEHNAALR----KDEGSLVFLRPQASDEGH   72 (94)
T ss_dssp             ECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESS--SBCC------TTTTTEEEC----TTSCCEEESSCCGGGCEE
T ss_pred             EEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeee--eeee------eecceeeec----ccceEEEEeccChhcCeE
Confidence            4455678899999999999999988765 69999842  2221      122333332    235689999999999999


Q ss_pred             EEEeec-CCCC-eeEEEEec
Q psy14080         88 YECQAQ-PYTT-TSHSQNAP  105 (113)
Q Consensus        88 Y~C~~~-~~~~-~s~~~~L~  105 (113)
                      |+|.+. ..+. .++.+.|.
T Consensus        73 Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          73 YQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             EEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEeCCCEEEEEEEEEE
Confidence            999994 4443 34555543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.9e-14  Score=87.10  Aligned_cols=78  Identities=9%  Similarity=0.007  Sum_probs=53.4

Q ss_pred             EEEecCCcEEEEEEEccCC--CCEEEEEecC-CC---eEEEec--ceE--EcCCCCEEEEEeCCCCcEEEEEccCCCCCC
Q psy14080         16 STGFLAVFSYSDKTVRDIV--KVRVSWVRRR-DW---HILTSG--VLT--YTNDARFQVIHTDGSDDWNLQIKFLQKRDN   85 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~-~~---~~l~~~--~~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
                      ..+.+|++|+|+|.+++..  ...+.|++|. +.   .++...  ...  .....||.+..+..++.++|+|++++++|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            4577899999999997553  3344455444 32   222221  111  123468887766677889999999999999


Q ss_pred             EEEEEeec
Q psy14080         86 GTYECQAQ   93 (113)
Q Consensus        86 G~Y~C~~~   93 (113)
                      |+|+|++.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999984

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=99.52  E-value=6.5e-15  Score=92.48  Aligned_cols=77  Identities=17%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             EEecCCcEEEEEEEccC--CCCEEEEEecCCC----eEEEe---c-ceEEcC--CCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080         17 TGFLAVFSYSDKTVRDI--VKVRVSWVRRRDW----HILTS---G-VLTYTN--DARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~----~~l~~---~-~~~~~~--~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      .+.+|+++.|.|++++.  ..+.++|+||.++    .+-.+   + ...+..  ..||.+..+..++...|+|++++++|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence            57899999999999964  5689999999853    22111   1 112221  37999998777888999999999999


Q ss_pred             CEEEEEeec
Q psy14080         85 NGTYECQAQ   93 (113)
Q Consensus        85 ~G~Y~C~~~   93 (113)
                      +|+|+|+-.
T Consensus        91 TAvYYCAr~   99 (117)
T d1b2wh1          91 TAVYYCARG   99 (117)
T ss_dssp             CEEEECCEE
T ss_pred             ceEEEEccc
Confidence            999999863

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.5e-14  Score=85.72  Aligned_cols=76  Identities=20%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             eEEEecCCcEEEEEEEccCCC----CEEEEEecCCCeEEEe-cceE-Ec--CCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVK----VRVSWVRRRDWHILTS-GVLT-YT--NDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~----~~V~W~k~~~~~~l~~-~~~~-~~--~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+++.+|++|+|+|.+.....    ..+.|.|.+ ..++.. .... ..  -..|..+.   .+++++|+|++++++|+|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~-~~v~~~~~~~~~~~~~~~~r~~~~---~~g~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEK-KMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETT-EEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecc-eEEEEEEeccceeecceeeeeeec---cCCcEEEEECcCChHHCe
Confidence            478999999999999875432    457776533 333222 1111 11  13566654   246789999999999999


Q ss_pred             EEEEeecC
Q psy14080         87 TYECQAQP   94 (113)
Q Consensus        87 ~Y~C~~~~   94 (113)
                      .|+|++..
T Consensus        79 ~Y~C~V~~   86 (105)
T d1dr9a1          79 TYECVVLK   86 (105)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999953

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.6e-15  Score=88.54  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             eEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec-
Q psy14080         15 ISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ-   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~-   93 (113)
                      +.++.+|+++.|+|.+.+ +.+.+.|++.+ ..+.       ..++|+.+.     .+.+|.|.+++++|+|.|.|.+. 
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g-~~l~-------~~~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~A~n   71 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQN-GVLK-------AESPKYGLM-----GRKNLLIFNLSEGDSGVYQCLSEE   71 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESS-SBCC-------CCSSSBCCT-----TTTCEEECSCCGGGCEEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCc-ccce-------eeeeeeecc-----eeeEEEECCCCHHHCcEEEEEEEE
Confidence            468999999999999987 66899999843 2222       124566543     23479999999999999999994 


Q ss_pred             CCCCee
Q psy14080         94 PYTTTS   99 (113)
Q Consensus        94 ~~~~~s   99 (113)
                      ..+..+
T Consensus        72 ~~g~~~   77 (92)
T d1olza1          72 RVKNKT   77 (92)
T ss_dssp             ECSSSE
T ss_pred             cCCCEE
Confidence            344333

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=2.3e-14  Score=86.55  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             eeEeecceEEEecC---CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          8 ILTAFGQISTGFLA---VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         8 i~~~~~~~~tv~~G---~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      ++....+++++.+|   ++++|.|.+.+.+.+.+.|+|.  +..+..     ..+.++...     +...|.|.+++.+|
T Consensus         6 ~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~n--g~~i~~-----~~~~~~~~~-----~~~~l~i~~~~~~d   73 (97)
T d1cs6a1           6 VFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMN--GTELKM-----GPDSRYRLV-----AGDLVISNPVKAKD   73 (97)
T ss_dssp             EEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEET--TEECCC-----STTSSEEEE-----TTEEEEESCCHHHH
T ss_pred             EEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEe--eeeccC-----CCCceEEee-----eeeEEEEecccccC
Confidence            34455666777665   7999999999999999999983  333321     123444433     35689999999999


Q ss_pred             CEEEEEeec-CCCCe-eEEEEec
Q psy14080         85 NGTYECQAQ-PYTTT-SHSQNAP  105 (113)
Q Consensus        85 ~G~Y~C~~~-~~~~~-s~~~~L~  105 (113)
                      +|.|.|.+. ..+.. |+.+.|+
T Consensus        74 ~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          74 AGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEe
Confidence            999999994 55543 5667764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=86.45  Aligned_cols=81  Identities=10%  Similarity=-0.056  Sum_probs=61.3

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE-EEEEe
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG-TYECQ   91 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   91 (113)
                      ..+.++.+|+++.|.|.+.+.|.+.|.|+|.+.. +..       ...++     ......+|.|.+++.+|+| .|.|.
T Consensus         9 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~-~~~-------~~~~~-----~~~~~~~L~i~~~~~~d~G~~Y~C~   75 (92)
T d2ifga1           9 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE-QSA-------TVMKS-----GGLPSLGLTLANVTSDLNRKNVTCW   75 (92)
T ss_dssp             CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCC-SSE-------EECCC-----CCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCCEEEeCCCEEEEeeeccCCCCcEEEEEECCce-eee-------eeeee-----eeccceeEEEccccccccceEEEEE
Confidence            3457899999999999999999999999985421 110       01111     1235679999999999999 79999


Q ss_pred             e-cCCCCeeEEEEece
Q psy14080         92 A-QPYTTTSHSQNAPG  106 (113)
Q Consensus        92 ~-~~~~~~s~~~~L~V  106 (113)
                      + +..+..+..+.|.|
T Consensus        76 a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          76 AENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEETTEECCEEECCCC
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9 56677788888876

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.2e-14  Score=85.74  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             ceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         14 QISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+.++.+|++++|.|.+.+ +.+.+.|+|.  +..+       ....|+.+..    ...+|.|.+++.+|+|.|.|.+.
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~--~~~l-------~~~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~   76 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFN--SQSL-------QLTERMTLSQ----NNSILRIDPIKREDAGEYQCEIS   76 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEET--TEEC-------CCCTTEEEET----TTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEe--eeec-------ccccceeccC----CceEEEEeccchhhceEEEEEEE
Confidence            4568999999999999876 4578999984  3332       2456777652    34589999999999999999995


Q ss_pred             C-CCC-eeEEEEeceec
Q psy14080         94 P-YTT-TSHSQNAPGLG  108 (113)
Q Consensus        94 ~-~~~-~s~~~~L~V~g  108 (113)
                      . .+. .+..+.|.|..
T Consensus        77 N~~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          77 NPVSVRRSNSIKLDIIF   93 (96)
T ss_dssp             SSSCCEECCCCEEEECC
T ss_pred             eCCCCeEEEeEEEEEEc
Confidence            4 343 35678888853

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9e-15  Score=90.49  Aligned_cols=99  Identities=19%  Similarity=0.296  Sum_probs=70.8

Q ss_pred             ccCCceeeEeecceEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe--CCCCcEEEEEc
Q psy14080          2 VAAPGGILTAFGQISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT--DGSDDWNLQIK   78 (113)
Q Consensus         2 ~~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~   78 (113)
                      +-+|+.|..  .+.+.+.+|+++.|.|.+.+. +.+.+.|+|.+  ..+..+     ...||.+...  .+....+|.|.
T Consensus         4 V~~Pp~i~~--~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~--~~i~~~-----~~~~~~~~~~~~~~~~~s~L~I~   74 (115)
T d2crya1           4 VNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKE--NVLESG-----TSGRYTVETISTEEGVISTLTIS   74 (115)
T ss_dssp             CCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSS--CEECSE-----EETTEEEEEEEETTEEEEEEECT
T ss_pred             EecCCEEec--CCCEEEecCCEEEEEEEeecCCCeeEEEEeeee--eeEeee-----eeeeEeeeeeccccCcEEEEEEe
Confidence            345877653  345678899999999999885 45679998743  222211     2346655432  22223579999


Q ss_pred             cCCCCC-CEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         79 FLQKRD-NGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        79 ~v~~~D-~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +++.+| +|.|.|.+ +..+..+..+.|.|.|.
T Consensus        75 ~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          75 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             ccchhcCCeEEEEEEEECCCeEEEEEEEEEECC
Confidence            999999 79999999 56788999999999875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.3e-13  Score=82.46  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEE--EeCCCCcEEEEEccC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVI--HTDGSDDWNLQIKFL   80 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~--~~~~~~~~~L~I~~v   80 (113)
                      -.|+.|+.....    ..+....|.|.+.+.+.+.|.|+|.  +..+.       .+.|+...  .+.......|.|.++
T Consensus         3 ~~PP~i~~~~~~----~~~~~~~i~~~v~G~P~P~v~W~~n--~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~   69 (105)
T d1wwca_           3 YYPPRVVSLEEP----ELRLEHCIEFVVRGNPPPTLHWLHN--GQPLR-------ESKIIHVEYYQEGEISEGCLLFNKP   69 (105)
T ss_dssp             CCCCCCCCCCCC----CCCCEEEEEEEEECSSCCEEEEEET--TEECC-------CSSSEEEEEEECSSEEEEEEEEESC
T ss_pred             EcCCeeEEeCCC----EEEEEEEEEEEEEEeCCCeEEEEeC--ccccC-------CCcceeeeEEeecccceEEEEEeec
Confidence            456666542211    2344566888999999999999984  34332       23343322  222233467999999


Q ss_pred             CCCCCEEEEEee-cCCCCeeEEEEeceecc
Q psy14080         81 QKRDNGTYECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        81 ~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      +.+|+|.|.|.+ +..+..+..+.|.|++.
T Consensus        70 ~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~   99 (105)
T d1wwca_          70 THYNNGNYTLIAKNPLGTANQTINGHFLKE   99 (105)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred             ccccceEEEEEEEcCCCEEEEEEEEEEEeC
Confidence            999999999999 56678889999999864

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.6e-13  Score=81.85  Aligned_cols=95  Identities=17%  Similarity=0.037  Sum_probs=68.2

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe---CCCCcEEEEEcc
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT---DGSDDWNLQIKF   79 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~   79 (113)
                      -.|+.|+....    ...++...|.|.+.+.|.+.|.|+|  ++..|.       .+.++.+...   ......+|.|.+
T Consensus         2 ~~pP~it~~~~----~~~~~~~~i~~~v~G~P~P~i~W~~--~g~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~   68 (103)
T d1wwbx_           2 HFAPTITFLES----PTSDHHWCIPFTVKGNPKPALQWFY--NGAILN-------ESKYICTKIHVTNHTEYHGCLQLDN   68 (103)
T ss_dssp             CCCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEE--TTEEEC-------CCSSEEEEEEEECSSEEEEEEEEES
T ss_pred             ccCCeeEEcCC----CccceeEEEEEEEEEeCCCEEEEEE--CCEEee-------eeeeeeeeecccccccceEEEEECC
Confidence            35666653222    2467888999999999999999998  344443       2334433211   122345899999


Q ss_pred             CCCCCCEEEEEee-cCCCCeeEEEEeceeccc
Q psy14080         80 LQKRDNGTYECQA-QPYTTTSHSQNAPGLGDL  110 (113)
Q Consensus        80 v~~~D~G~Y~C~~-~~~~~~s~~~~L~V~g~~  110 (113)
                      ++.+|+|.|.|.+ +..+..+..++|.|.+.-
T Consensus        69 ~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          69 PTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred             CCHHhCceEEEEEeccCCEEEEEEEEEEEeCC
Confidence            9999999999999 567888999999998754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-15  Score=90.37  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      +|+.+... .....+.+|++++|.|.+ .+.+.+.+.|+|.. ..+...... ....+.++..    ......|.|.+++
T Consensus         1 VPP~~p~~-~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~-~~i~~~~~~~~~~~~~~~~~----~~~~~~l~I~~v~   74 (104)
T d1nbqa2           1 VPPSKPTV-NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDG-IVMPTNPKSTRAFSNSSYVL----NPTTGELVFDPLS   74 (104)
T ss_dssp             BCCCCCCC-CCBSEEETTSCEEECCCCCSCBSCCEEEEEETT-CCCCSCSSSSSSCTTCCCCC----CTTTCCEEESSCC
T ss_pred             CCCccccc-CCCCEEecCCcEEEEEEeecCCCCCEEEEEECC-EEccCCCceeEEeeCCcEEE----eecccceEECCCC
Confidence            35544432 234578899999999998 46788999999853 222111100 0111222211    2345689999999


Q ss_pred             CCCCEEEEEeec-CCCCeeEEEEece
Q psy14080         82 KRDNGTYECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~~s~~~~L~V  106 (113)
                      .+|+|.|.|.+. ..+.....+.+.|
T Consensus        75 ~~D~G~Y~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          75 ASDTGEYSCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             GGGCCCEEEEEECSSSCCEECCCBCC
T ss_pred             cccCcEEEEEEEECCCceEEEEEEEE
Confidence            999999999995 4555544444433

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=82.82  Aligned_cols=74  Identities=12%  Similarity=0.032  Sum_probs=54.4

Q ss_pred             EEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|++++|.|.+. +.+.+.+.|||.  +..+.             ...    ....|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kn--g~~~~-------------~~~----~~~~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQN--GKDRK-------------YFH----HNSDFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEET--TEEEE-------------EEE----ECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEc--ccccc-------------eec----cccccEECccceeccceEEEEEEe
Confidence            4588999999999986 456668999983  22221             111    134789999999999999999953


Q ss_pred             -CC-CeeEEEEeceec
Q psy14080         95 -YT-TTSHSQNAPGLG  108 (113)
Q Consensus        95 -~~-~~s~~~~L~V~g  108 (113)
                       .+ ..|..++|.|++
T Consensus        73 ~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          73 GSKNVSSETVNITITQ   88 (89)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCCeEEeeEEEEEEe
Confidence             33 456788998875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.4e-15  Score=87.68  Aligned_cols=75  Identities=11%  Similarity=-0.078  Sum_probs=58.9

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .....++++.+|+++.|.|.+.+.+.+.|.|+|.. ..++.                       .+.|.+++.+|+|.|.
T Consensus         8 ~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g-~~~~~-----------------------~~~~~~v~~~d~G~Y~   63 (84)
T d2oz4a3           8 RDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG-TFPLP-----------------------IGESVTVTRDLEGTYL   63 (84)
T ss_dssp             GGSCSEEEEETTCEECCCCCCEEESCCEEEEEETT-TEECC-----------------------TTSCEECCGGGCEEEE
T ss_pred             cCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEee-cccee-----------------------eeeeeccccCCCCEEE
Confidence            34567889999999999999999999999999832 22210                       1224567889999999


Q ss_pred             Eee-cCCCCeeEEEEeceec
Q psy14080         90 CQA-QPYTTTSHSQNAPGLG  108 (113)
Q Consensus        90 C~~-~~~~~~s~~~~L~V~g  108 (113)
                      |.+ +..+..+..+.|.|+.
T Consensus        64 C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          64 CRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCEEEEEEEEEEEC
Confidence            999 5667888889999875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=81.65  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      |-|+.+++..++..++.+|++++|.|.+.+.+.+ .+.|+|.  +..+.                   .+.-.|.|.+++
T Consensus         1 aPpkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~--g~~~~-------------------~~~~~l~i~~v~   59 (85)
T d2fcba1           1 APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHN--GNLIP-------------------THTQPSYRFKAN   59 (85)
T ss_dssp             CCCBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEET--TEECT-------------------TCCSSEEEEECC
T ss_pred             CCCCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecc--ccccc-------------------ccccceEEeecc
Confidence            3466677877778899999999999999877654 5677762  22221                   112368899999


Q ss_pred             CCCCEEEEEeecCCCCeeEEEEecee
Q psy14080         82 KRDNGTYECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        82 ~~D~G~Y~C~~~~~~~~s~~~~L~V~  107 (113)
                      .+|+|.|.|++.. ...|..+.|.|.
T Consensus        60 ~~dsG~Y~C~a~n-s~~S~~v~l~V~   84 (85)
T d2fcba1          60 NNDSGEYTCQTGQ-TSLSDPVHLTVL   84 (85)
T ss_dssp             GGGCEEEEEECTT-SBCCCCEEEEEE
T ss_pred             ccCCcEEEEECCC-CcccccEEEEEE
Confidence            9999999999854 345667788775

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=81.08  Aligned_cols=78  Identities=9%  Similarity=-0.043  Sum_probs=54.5

Q ss_pred             EeecceEEEecCCcEEEEEEEccCCCC-EEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         10 TAFGQISTGFLAVFSYSDKTVRDIVKV-RVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        10 ~~~~~~~tv~~G~~a~L~C~v~~~~~~-~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      +..+++.++.+|+++.|.|.+.+.+.+ .|.|||.  +..+..       ..         .+..+  |.....+|+|.|
T Consensus         5 ~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~--g~~i~~-------~~---------~~~~~--l~~~~~~d~G~Y   64 (85)
T d1rhfa2           5 TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG--TTKIGG-------PA---------PSPSV--LNVTGVTQSTMF   64 (85)
T ss_dssp             EECCCCEEECTTCCEEEEEEEECSSSCCEEEEEET--TEECSC-------SE---------ESSEE--EEECCCSSCEEE
T ss_pred             EEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEEC--CEECCC-------CC---------CcceE--EecCCccccEEE
Confidence            445677899999999999999999887 8999983  333210       10         12334  445556799999


Q ss_pred             EEee-cCCC-CeeEEEEecee
Q psy14080         89 ECQA-QPYT-TTSHSQNAPGL  107 (113)
Q Consensus        89 ~C~~-~~~~-~~s~~~~L~V~  107 (113)
                      .|.+ +..+ ..|+.+.|.|+
T Consensus        65 ~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          65 SCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEEEEEC
Confidence            9999 4555 34667887764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.42  E-value=3.9e-13  Score=80.08  Aligned_cols=75  Identities=16%  Similarity=0.083  Sum_probs=55.4

Q ss_pred             EEEecCCcEEEEEEEc-cCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         16 STGFLAVFSYSDKTVR-DIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~-~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      ..+.+|++++|.|.+. +.+...+.|||.  +..+.             ..    ..+..|.|.+++.+|+|.|.|.+..
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~--g~~~~-------------~~----~~~~~l~i~~v~~~dsG~Y~C~a~n   70 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQN--GKSKK-------------FS----RSDPNFSIPQANHSHSGDYHCTGNI   70 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEET--TEEEE-------------EE----SSCCEEEETTCCGGGCEEEEEEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEee--ccccc-------------cc----ccccccccCccCHHHCCeEEEEEEe
Confidence            4578999999999996 456678999983  22221             01    1234799999999999999999953


Q ss_pred             -CC-CeeEEEEeceecc
Q psy14080         95 -YT-TTSHSQNAPGLGD  109 (113)
Q Consensus        95 -~~-~~s~~~~L~V~g~  109 (113)
                       .+ ..|..++|.|.+.
T Consensus        71 ~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          71 GYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             TTEEEECCCEEEEECCC
T ss_pred             CCCCEEeeeEEEEEeCC
Confidence             34 3467889999874

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.7e-13  Score=84.72  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=57.0

Q ss_pred             EEecCCcEEEEEEEccCCCCEEEEEecCC----CeEEEe--c-ceEEc---CCCCEEEEEeCCCCcEEEEEccCCCCCCE
Q psy14080         17 TGFLAVFSYSDKTVRDIVKVRVSWVRRRD----WHILTS--G-VLTYT---NDARFQVIHTDGSDDWNLQIKFLQKRDNG   86 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~~~~~V~W~k~~~----~~~l~~--~-~~~~~---~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
                      .+.+|++|+|+|.........+.|+|...    ..+...  . +....   -.+|..+.     .+++|.|.+++.+|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-----~ngSL~I~~v~~~D~G   84 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQMITMKDMG   84 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-----TTSCEEECSCCGGGCE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-----ccccEEEcCCCchhCE
Confidence            36799999999974333456899999652    123222  1 11111   13588775     3679999999999999


Q ss_pred             EEEEeecCCC--CeeEEEEece
Q psy14080         87 TYECQAQPYT--TTSHSQNAPG  106 (113)
Q Consensus        87 ~Y~C~~~~~~--~~s~~~~L~V  106 (113)
                      .|+|++....  ..+..++|+|
T Consensus        85 ~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          85 VYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEECCCCEEEEEEEEEE
Confidence            9999995433  3455677776

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-12  Score=80.18  Aligned_cols=93  Identities=10%  Similarity=-0.056  Sum_probs=61.6

Q ss_pred             eeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEe---C----CCCcEEEEEcc
Q psy14080          7 GILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHT---D----GSDDWNLQIKF   79 (113)
Q Consensus         7 ~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~---~----~~~~~~L~I~~   79 (113)
                      .|+......+.+.+|+++.|.|.+.+.+.+.|.|+|..  ..+....    ...+......   .    .....+|+|.+
T Consensus         3 ~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g--~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   76 (107)
T d1iray3           3 VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG--SVIDEDD----PVLGEDYYSVENPANKRRSTLITVLNISE   76 (107)
T ss_dssp             EEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETT--EECCTTC----SSEEEEEEEECCSSCGGGEEEEEEEEESS
T ss_pred             CEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECC--ccccccc----ceeeeeeeeeccceeeecccceEEEEEee
Confidence            44555556677889999999999999999999998742  2211000    0000000000   0    00134899999


Q ss_pred             CCCCCCEE-EEEee-cCCCCeeEEEEec
Q psy14080         80 LQKRDNGT-YECQA-QPYTTTSHSQNAP  105 (113)
Q Consensus        80 v~~~D~G~-Y~C~~-~~~~~~s~~~~L~  105 (113)
                      ++.+|.|. |.|.+ +..+..+..+.|.
T Consensus        77 v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          77 IESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             CCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             cchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            99999995 99999 5667778777775

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5e-14  Score=83.02  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=52.7

Q ss_pred             eEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080          9 LTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus         9 ~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ++..++..++.+|++++|.|.+.+.+.+...|+.+++ ..+                   .....+|.|.+++.+|+|.|
T Consensus         4 It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~l~i~~v~~~d~G~Y   63 (82)
T d1f2qa1           4 VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG-SLS-------------------EETNSSLNIVNAKFEDSGEY   63 (82)
T ss_dssp             CEEESSCSEEETTCCEEEECCTTCC----CCEEEETT-EEC-------------------SCCSSEEEECSCCGGGCEEE
T ss_pred             EEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeee-eee-------------------ecccceeEECCCChhhCCcE
Confidence            3444556789999999999999887766544433332 111                   01234799999999999999


Q ss_pred             EEeecCCCCeeEEEEecee
Q psy14080         89 ECQAQPYTTTSHSQNAPGL  107 (113)
Q Consensus        89 ~C~~~~~~~~s~~~~L~V~  107 (113)
                      .|.+.. ...+..+.|.|.
T Consensus        64 ~C~a~~-s~~S~~v~l~V~   81 (82)
T d1f2qa1          64 KCQHQQ-VNESEPVYLEVF   81 (82)
T ss_dssp             EEECTT-SSCCCCEEEEEE
T ss_pred             EEEecC-CCCcccEEEEEE
Confidence            999854 345667888875

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=3.3e-14  Score=88.47  Aligned_cols=79  Identities=19%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             ceEEEecCCcEEEEEEE-ccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCE---EEE
Q psy14080         14 QISTGFLAVFSYSDKTV-RDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNG---TYE   89 (113)
Q Consensus        14 ~~~tv~~G~~a~L~C~v-~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G---~Y~   89 (113)
                      .+.++.+|+++.|.|.+ .+.|.+.|.|+|..... ... ........|+...     .+.+|.|.+++.+|+|   .|.
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~-~~~-~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~gd~g~Y~   82 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA-DPN-ADVTDFDRRITAG-----PDGNLYFTIVTKEDVSDIYKYV   82 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTS-CGG-GCCCCCCTTEEEC-----TTSCEEEEEECGGGCCSSEEEE
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccc-ccc-ccceeeeeeeccc-----cccccEEeeeEeeccCCceEEE
Confidence            34567899999999996 78999999999964321 111 0111123455543     3568999999999877   899


Q ss_pred             Eeec-CCCCee
Q psy14080         90 CQAQ-PYTTTS   99 (113)
Q Consensus        90 C~~~-~~~~~s   99 (113)
                      |.+. ..+..+
T Consensus        83 C~A~N~~g~~~   93 (111)
T d1biha2          83 CTAKNAAVDEE   93 (111)
T ss_dssp             EEEECTTCSSC
T ss_pred             EEEEeCCCCce
Confidence            9995 444444

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.5e-12  Score=80.03  Aligned_cols=85  Identities=16%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             EEEecCCcEE---EEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeC-----CCCcEEEEEccCCCCCCEE
Q psy14080         16 STGFLAVFSY---SDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTD-----GSDDWNLQIKFLQKRDNGT   87 (113)
Q Consensus        16 ~tv~~G~~a~---L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~   87 (113)
                      +.+..|..+.   |.|.+.+.|.+.|.|+|.  +..|.       .+.++......     ......|.|.+++.+|+|.
T Consensus         7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~n--g~~l~-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN--GSVLN-------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEECCSSCCEEEEEET--TEECC-------CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             eEECCCeEEEEEEEEEEEEEecCCeEEEEEe--eeEcc-------CccceeeeeeeeeeeeeccceEEEECcccHHHCcE
Confidence            3444445555   555899999999999984  33332       22333322111     1123579999999999999


Q ss_pred             EEEee-cCCCCeeEEEEeceecc
Q psy14080         88 YECQA-QPYTTTSHSQNAPGLGD  109 (113)
Q Consensus        88 Y~C~~-~~~~~~s~~~~L~V~g~  109 (113)
                      |.|.+ +..+..+..++|.|+..
T Consensus        78 Y~C~A~N~~G~~~~~i~v~v~~~  100 (107)
T d1he7a_          78 YTLLAANPFGQASASIMAAFMDN  100 (107)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcC
Confidence            99999 56678888999988764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.6e-13  Score=81.02  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             EEEecCCcEEEEE------EEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         16 STGFLAVFSYSDK------TVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        16 ~tv~~G~~a~L~C------~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      ..+..|+++.|.|      ...+.+.+.|.|+|  ++..|..      .+.|+...      +.+|.|.+++.+|+|.|+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~k--dg~~l~~------~~~~~~~~------~~~L~I~~v~~~D~G~Y~   74 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK--DCKPLLL------DNIHFSGV------KDRLIVMNVAEKHRGNYT   74 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEE--TTEECCC------CSSSEEEE------TTEEEESSCCGGGCEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEE--CCccccC------CCcEEEec------CCEEEEcccccccCcEEE
Confidence            4578999999999      45677778999998  3444421      23344443      347999999999999999


Q ss_pred             Eeec-CCC----CeeEEEEeceeccc
Q psy14080         90 CQAQ-PYT----TTSHSQNAPGLGDL  110 (113)
Q Consensus        90 C~~~-~~~----~~s~~~~L~V~g~~  110 (113)
                      |.+. ..+    ..+..+.|.|+...
T Consensus        75 C~a~n~~~g~~~~vt~~i~~~v~~~~  100 (103)
T d1iray2          75 CHASYTYLGKQYPITRVIEFITLEEN  100 (103)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECCC
T ss_pred             EEEEECcCCEEEEEEEEEEEEECCCC
Confidence            9994 333    33566667666543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=78.01  Aligned_cols=76  Identities=14%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             eEEEecCCcEEEEEEEccC-CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         15 ISTGFLAVFSYSDKTVRDI-VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        15 ~~tv~~G~~a~L~C~v~~~-~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ...+.+|++++|.|.+.+. +...+.|||.  +..+.        .         ......|.|.+++.+|+|.|.|.+.
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~--g~~~~--------~---------~~~~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD--GEALK--------Y---------WYENHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEET--TEECC--------S---------CCCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEEEe--eeccc--------c---------ccccceEEEeeeeeecCcEEEEEEE
Confidence            3467899999999999654 4568899984  22221        0         1123479999999999999999995


Q ss_pred             CC--CCeeEEEEeceecc
Q psy14080         94 PY--TTTSHSQNAPGLGD  109 (113)
Q Consensus        94 ~~--~~~s~~~~L~V~g~  109 (113)
                      ..  ...|..++|.|++.
T Consensus        70 n~~~~~~S~~v~i~V~~~   87 (89)
T d1f2qa2          70 VWQLDYESEPLNITVIKA   87 (89)
T ss_dssp             ETTEEEECCCEEEEEECS
T ss_pred             eCCCCeEeeeEEEEEEeC
Confidence            32  34578889999865

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.5e-11  Score=73.19  Aligned_cols=79  Identities=8%  Similarity=-0.055  Sum_probs=49.7

Q ss_pred             ceeeEeecceEEEecCCcEEEEEEEccC---CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14080          6 GGILTAFGQISTGFLAVFSYSDKTVRDI---VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK   82 (113)
Q Consensus         6 ~~i~~~~~~~~tv~~G~~a~L~C~v~~~---~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   82 (113)
                      +....-..+...+.+|++++|.|.+.+.   +...|.|||.  +..+..+.......       ........|.|.....
T Consensus         2 P~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~--~~~i~~~~~~~~~~-------~~~~~~s~l~~~~~~~   72 (106)
T d1zxqa1           2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG--NETLHYETFGKAAP-------APQEATATFNSTADRE   72 (106)
T ss_dssp             CCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEET--TEEEEEEECCSSTT-------CTTCEEEEEEEECCGG
T ss_pred             CcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcC--CEEeeecccceEee-------cccceeEEEEEeeehh
Confidence            3333333444578899999999999873   3457999983  44443211100000       0112345788888889


Q ss_pred             CCCEEEEEeec
Q psy14080         83 RDNGTYECQAQ   93 (113)
Q Consensus        83 ~D~G~Y~C~~~   93 (113)
                      +|.|.|+|++.
T Consensus        73 d~g~~ytC~A~   83 (106)
T d1zxqa1          73 DGHRNFSCLAV   83 (106)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEEE
Confidence            99999999995

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-10  Score=70.88  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=55.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccC-CC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDI-VK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   81 (113)
                      |+.|.-. .....+.+|++++|.|.+.+. +.  ..|.|+|.  ...+..+.            ........+|.|..++
T Consensus         4 P~~v~i~-p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~--~~~l~~~~------------~~~~~~~s~l~i~~~~   68 (103)
T d1iama1           4 PERVELA-PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG--EKELKREP------------AVGEPAEVTTTVLVRR   68 (103)
T ss_dssp             CSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET--TEEEEEEE------------CCTTTEEEEEEEECCS
T ss_pred             CCceEEe-CCCceEeCCCEEEEEEEecCCCCCCceEEEEccc--cccccccc------------cccccceEEEEEeeeh
Confidence            5555443 233468899999999999874 33  36889884  33332110            0012245689999999


Q ss_pred             CCCCEEEEEeec-CCCCeeEEEEece
Q psy14080         82 KRDNGTYECQAQ-PYTTTSHSQNAPG  106 (113)
Q Consensus        82 ~~D~G~Y~C~~~-~~~~~s~~~~L~V  106 (113)
                      .+|.|.|+|.+. ..+..+....+.|
T Consensus        69 ~dd~g~ytC~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          69 DHHGAQFSCRTELDLRPQGLELFENT   94 (103)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEEE
T ss_pred             hHCCCEEEEEEEeCCCCccCeEeeeE
Confidence            999999999994 3343333333333

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.8e-09  Score=62.12  Aligned_cols=91  Identities=12%  Similarity=-0.036  Sum_probs=58.4

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+..+++.+.. .|..|++|+|.|.... +.....|+|..........      ..+..    .+.....+.|.+|+.+
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~~~~----~~~~~a~F~l~~vt~~   72 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG------RRLKF----WNETDPEFVIDHMDAN   72 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS------EECC--------CCCEEEECSCCGG
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceecc------ccccC----CCCceEEEEecCCCHH
Confidence            477777776644 5889999999998763 4457889885433222110      00000    1123457899999999


Q ss_pred             CCEEEEEeecCCC---CeeEEEEece
Q psy14080         84 DNGTYECQAQPYT---TTSHSQNAPG  106 (113)
Q Consensus        84 D~G~Y~C~~~~~~---~~s~~~~L~V  106 (113)
                      |+|.|.|......   ..|..+.|.|
T Consensus        73 ~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          73 KAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             GCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             HCceEEEEEECCCcccCCCCCEEEEe
Confidence            9999999985422   2356666665

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.9e-08  Score=59.33  Aligned_cols=90  Identities=10%  Similarity=-0.048  Sum_probs=58.7

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      .|+..+++.... .|..|++|+|.|.... ......|+|......+..        .+    .....+...+.|.+|+.+
T Consensus         2 lPKPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~--------~~----~~~~~~~a~F~i~~v~~~   67 (95)
T d1olla1           2 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDR--------PK----PPERINKVKFYIPDMNSR   67 (95)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEEC--------CS----SCTTCCEEEEEESSCCGG
T ss_pred             CCCCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeE--------Ec----cCCCccEEEEEEeeeecC
Confidence            577778776654 4789999999998653 345667777432211110        00    001223458999999999


Q ss_pred             CCEEEEEeecCC---CCeeEEEEecee
Q psy14080         84 DNGTYECQAQPY---TTTSHSQNAPGL  107 (113)
Q Consensus        84 D~G~Y~C~~~~~---~~~s~~~~L~V~  107 (113)
                      |+|.|.|.....   ...|..+.|.|.
T Consensus        68 ~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          68 MAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             GCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             CCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            999999997432   234667777774

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.7e-08  Score=59.42  Aligned_cols=87  Identities=9%  Similarity=-0.040  Sum_probs=58.3

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.++.+.+.. .|..|++|+|.|.-.. ......|+|......+              ... ...+...+.|.+|..+|
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~--------------~~~-~~~~~a~F~i~~v~~~~   65 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--------------QRG-YGKVQAEFPLGPVTTAH   65 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--------------EEE-ECSSEEEEEEEECCGGG
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCCccce--------------eec-CCCceeEEEecccChhc
Confidence            55666665543 5888999999998653 4457788885422221              111 12345689999999999


Q ss_pred             CEEEEEeecCCC----CeeEEEEeceec
Q psy14080         85 NGTYECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        85 ~G~Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      +|.|.|.....+    ..|....|.|.|
T Consensus        66 ~G~Y~C~~~~~~~~wS~~SdpLeL~VtG   93 (93)
T d1olla2          66 RGTYRCFGSYNNHAWSFPSEPVKLLVTG   93 (93)
T ss_dssp             CEEEEEECEEETTEECCCCCCEEEEEEC
T ss_pred             CceEEEEeECCCCCcCCCCCCEEEEeeC
Confidence            999999753222    347778888876

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.1e-08  Score=57.86  Aligned_cols=86  Identities=14%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+.++...... .|..|++|+|.|...........|+|......           .+.. .   ......+.|.+++.+|
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~-----------~~~~-~---~~~~a~F~l~~v~~~~   67 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSL-----------PQHQ-S---GEHPANFSLGPVDLNV   67 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSC-----------CSEE-E---CSSSEEEECCSCCGGG
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccc-----------eEEc-C---CCcccEEEEecccccc
Confidence            66677665543 68999999999986544545678888542111           1111 1   1234688999999999


Q ss_pred             CEEEEEeecC--CC----CeeEEEEece
Q psy14080         85 NGTYECQAQP--YT----TTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~~~--~~----~~s~~~~L~V  106 (113)
                      +|.|.|....  .+    ..|..+.|.|
T Consensus        68 ~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          68 SGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             CEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             CcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            9999998742  22    2356666655

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.6e-08  Score=59.75  Aligned_cols=91  Identities=13%  Similarity=-0.043  Sum_probs=57.5

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCC
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKR   83 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   83 (113)
                      +|+.++.+.+.. .|..|++|+|.|.... .......||.+....+.      ....   .   ...+...+.|.+|+.+
T Consensus         2 LPkP~Lsa~Ps~-~V~~G~~VTL~C~~~~-~~~~f~L~keg~~~~~~------~~~~---~---~~~~~a~F~i~~v~~~   67 (96)
T d1ugna1           2 LPKPTLWAEPGS-VITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWI------TRIP---Q---ELVKKGQFPIPSITWE   67 (96)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCCEEEEESSSCCHHH------HTSC---H---HHHTTTEEEESSCCGG
T ss_pred             CCCCEEEeECCC-ccCCCCcEEEEEeCCC-CCCEEEEEECCCCcccE------EEcc---C---CCCCEEEEEEEecCHH
Confidence            577777766553 5789999999999653 33455566643211000      0000   0   0113458899999999


Q ss_pred             CCEEEEEeecCCC----CeeEEEEeceec
Q psy14080         84 DNGTYECQAQPYT----TTSHSQNAPGLG  108 (113)
Q Consensus        84 D~G~Y~C~~~~~~----~~s~~~~L~V~g  108 (113)
                      |+|.|.|.....+    ..|..+.|.|.|
T Consensus        68 ~~G~Y~C~y~~~~~~~S~~Sd~leL~VtG   96 (96)
T d1ugna1          68 HTGRYRCYYGSDTAGRSESSDPLELVVTG   96 (96)
T ss_dssp             GCEEEEEEEEETTTEECCCCCCEEEEEEC
T ss_pred             HCCeEEEEEeCCCCCccccCCCEEEEEeC
Confidence            9999999974332    346777888876

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.43  E-value=1e-06  Score=52.81  Aligned_cols=88  Identities=13%  Similarity=-0.002  Sum_probs=54.6

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCC
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRD   84 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
                      |+..+.+.... .|..|++|+|.|.... ......|+|........            ..........+.+.|..+..+|
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~------------~~~~~~~~~~~~f~~~~~~~~~   70 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR------------LPAGPKVNGTFQADFPLGPATH   70 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE------------EECEEEETTEEEEEEEEEECCS
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccE------------EEccccCCccEEEEEecccccc
Confidence            67777766543 6789999999998764 34567788754221110            0000112345677788888999


Q ss_pred             CEEEEEeec--CCC----CeeEEEEece
Q psy14080         85 NGTYECQAQ--PYT----TTSHSQNAPG  106 (113)
Q Consensus        85 ~G~Y~C~~~--~~~----~~s~~~~L~V  106 (113)
                      +|.|.|...  ..+    ..|..+.|.|
T Consensus        71 ~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          71 GGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             CEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             CEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            999999763  221    2255556555

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.8e-06  Score=51.64  Aligned_cols=79  Identities=11%  Similarity=-0.094  Sum_probs=47.7

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEE-EeCCCCcEEEEEccCC
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVI-HTDGSDDWNLQIKFLQ   81 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~-~~~~~~~~~L~I~~v~   81 (113)
                      |-|...+.+.... .|..|++|+|.|.... .......+|.......          .+.... .........+.|.+|+
T Consensus         1 a~pkPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~----------~~~~~~~~~~~~~~a~F~l~~v~   68 (98)
T d1ugna2           1 AYIKPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHP----------QCLNSQPHARGSSRAIFSVGPVS   68 (98)
T ss_dssp             SSCCCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC----------------CEEEC------CCEEEEEECCCC
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCc----------EeeeeEEcCCCceEEEEEeeecc
Confidence            4477777766644 5899999999999663 3345556664321110          000000 0011234579999999


Q ss_pred             CCCCEEEEEeec
Q psy14080         82 KRDNGTYECQAQ   93 (113)
Q Consensus        82 ~~D~G~Y~C~~~   93 (113)
                      .+|+|.|.|...
T Consensus        69 ~~~~G~Y~C~y~   80 (98)
T d1ugna2          69 PSRRWWYRCYAY   80 (98)
T ss_dssp             TTSCEEEEEEEE
T ss_pred             cCCCeEEEEeeE
Confidence            999999999874

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=3.5e-06  Score=49.43  Aligned_cols=87  Identities=17%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             EEEecCCcEEEEEEEccCC-CCEEEEEecCCCeEEEecceEEcCCCCEEEE-EeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         16 STGFLAVFSYSDKTVRDIV-KVRVSWVRRRDWHILTSGVLTYTNDARFQVI-HTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      -++..|++..|.|.+..-. .+.|.|-|.++..-.....    ...|++.= ..++-.-|.|+...+-++|.|.|.|.++
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~----~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEV----GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCC----BTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeec----CCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            4788899999999998653 4789999987532221110    12233321 1233456899999999999999999997


Q ss_pred             CCC--CeeEEEEece
Q psy14080         94 PYT--TTSHSQNAPG  106 (113)
Q Consensus        94 ~~~--~~s~~~~L~V  106 (113)
                      ..+  ..|+.+.+.|
T Consensus        89 f~s~vieSHSvti~V  103 (104)
T d1xaua_          89 FNSQVINSHSVTIHV  103 (104)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             CChhheecceEEEEe
Confidence            543  3355555554

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.24  E-value=6.2e-06  Score=49.05  Aligned_cols=67  Identities=15%  Similarity=0.034  Sum_probs=43.4

Q ss_pred             EEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         16 STGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        16 ~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      -.|..|++|+|.|.-.. ......+||.........          -........+...+.|.+|+.+|+|.|.|...
T Consensus        11 ~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~----------~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1          11 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR----------LIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE----------EECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCcee----------eeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            35788999999999764 345677887553221110          00001112234579999999999999999874

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.4e-06  Score=49.83  Aligned_cols=80  Identities=9%  Similarity=-0.107  Sum_probs=49.7

Q ss_pred             cceEEEecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         13 GQISTGFLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        13 ~~~~tv~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...+.+.+|+++.++|++.+..-....| +..+..++.       ....+.-.  .   ..=++|.+++.+|+|.|+|.+
T Consensus        12 p~~V~v~eg~~~vIPC~vT~P~~~VtL~-~~~~~~~~p-------~g~~v~~D--p---k~Gf~I~~~~~~~~g~y~C~a   78 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTSPNITVTLK-KFPLDTLIP-------DGKRIIWD--S---RKGFIISNATYKEIGLLTCEA   78 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSCTTSCCEEE-ETTTEEECC-------CSSSEEEE--T---TTEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEccCCCCCceeEEE-eccCCccCC-------CCCEEEEC--C---CCCEEEeCCCcccCeEEEEEE
Confidence            4457888999999999999643322345 433333321       11222221  1   224778999999999999999


Q ss_pred             cCCCCeeEEEEec
Q psy14080         93 QPYTTTSHSQNAP  105 (113)
Q Consensus        93 ~~~~~~s~~~~L~  105 (113)
                      ...+....+.+|.
T Consensus        79 ~~~g~~~~S~yl~   91 (95)
T d1fltx_          79 TVNGHLYKTNYLT   91 (95)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             EECCEEEEEEEEE
Confidence            7666543334443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.5e-05  Score=46.83  Aligned_cols=68  Identities=9%  Similarity=0.027  Sum_probs=41.6

Q ss_pred             EEecCCcEEEEEEEccC-CC--CEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         17 TGFLAVFSYSDKTVRDI-VK--VRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~-~~--~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      .+.+|+.++|.|.+.+. +.  ..|.||+.  ...+.....  ....++.+..       ...|++.-....|...|+|+
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g--~~~~~~~~~~~~~~~~~~~~~-------~s~l~~~~~~~D~g~~ltC~   82 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKG--DHLMKSQEFLEDADRKSLETK-------SLEVTFTPVIEDIGKVLVCR   82 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEET--TEEEEEEECCSCCSSCCCEEE-------EEEEEECCCGGGTTCEEEEE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEecc--CceeeccccccccccCCccee-------eEEEEccCChHHCCcEEEEE
Confidence            36799999999999864 42  36899973  444332111  1112334433       23677765555556689999


Q ss_pred             ec
Q psy14080         92 AQ   93 (113)
Q Consensus        92 ~~   93 (113)
                      +.
T Consensus        83 a~   84 (109)
T d1vcaa1          83 AK   84 (109)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6.1e-05  Score=43.06  Aligned_cols=68  Identities=12%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             ecCCcEEEEEEEccCCC--CEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080         19 FLAVFSYSDKTVRDIVK--VRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~~--~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      ..|..++|.|.+...+.  ..-.|.|  ++.+|.-        +|..      ...-.++|..  .+|+|.|.|.....|
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K--~gkvl~e--------d~~~------~~~tey~V~~--~D~SGeY~CVFl~~P   71 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLK--GGVVLKE--------DALP------GQKTEFKVDS--DDQWGEYSCVFLPEP   71 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEES--SSEEEEC--------TTCC------CSEEEEEECG--GGCCEEEEEEEESTT
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEee--CCEEccc--------cCCC------CCceEEEEec--CCCCceEEEEEcCCC
Confidence            45889999999987643  3458987  4566532        2211      1233556664  789999999998888


Q ss_pred             CeeEEEEe
Q psy14080         97 TTSHSQNA  104 (113)
Q Consensus        97 ~~s~~~~L  104 (113)
                      .....+++
T Consensus        72 ~~~a~IeV   79 (80)
T d3b5ha2          72 MGTANIQL   79 (80)
T ss_dssp             SCEEEEEE
T ss_pred             cceeEEEe
Confidence            87765554

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.3e-05  Score=47.91  Aligned_cols=81  Identities=11%  Similarity=0.229  Sum_probs=47.8

Q ss_pred             CccCCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEe---cceEEcCCCCEEEEEeCCCCcEEE
Q psy14080          1 MVAAPGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTS---GVLTYTNDARFQVIHTDGSDDWNL   75 (113)
Q Consensus         1 ~~~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~---~~~~~~~~~R~~~~~~~~~~~~~L   75 (113)
                      |+..|+.|......  .+..|++++|.|.+.+.  ..-.|.|.|.+  ..+..   .......|+-|...       ..|
T Consensus         1 ~v~~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng--~~v~~~~~~~~~~~~dgty~~~-------s~l   69 (100)
T d1k5nb_           1 MIQRTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNG--ERIEKVEHSDLSFSKDWSFYLL-------YYT   69 (100)
T ss_dssp             CCCBCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETT--EECTTCEECCCEECTTSCEEEE-------EEE
T ss_pred             CccCCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECC--EecCCccccceecCCCCcEEEE-------EEe
Confidence            45667777654222  24679999999999986  34588998742  22211   01112234444432       134


Q ss_pred             EEccCCCCCCEEEEEeecCC
Q psy14080         76 QIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        76 ~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      .|   ..+|.+.|.|.+...
T Consensus        70 ~v---~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          70 EF---TPTEKDEYACRVNHV   86 (100)
T ss_dssp             EE---CCCSSCCEEEEEECT
T ss_pred             EE---CCCCCCEEEEEEEeC
Confidence            44   456788999999643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.88  E-value=7.9e-05  Score=44.37  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .|+.|......  .+..|++++|.|.+.+.  ..-.|.|+|.+  ..+..+    ......|.-|...       ..|.+
T Consensus         2 ~pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng--~~v~~~~~~t~~~~~~dgtf~~~-------s~l~v   70 (100)
T d1muja1           2 EAPQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNS--KSVADGVYETSFFVNRDYSFHKL-------SYLTF   70 (100)
T ss_dssp             CCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESS--SBCCSSEEECCCEECTTSCEEEE-------EEEEE
T ss_pred             CCCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCC--eeccCCceeeeeEECCCCCEEEE-------EEeEE
Confidence            46666543222  35679999999999986  35689998743  112111    1112334456543       24554


Q ss_pred             ccCCCCCCEEEEEeecC
Q psy14080         78 KFLQKRDNGTYECQAQP   94 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~   94 (113)
                      .   ++|.+.|.|.+..
T Consensus        71 ~---~~~~~~ytC~V~H   84 (100)
T d1muja1          71 I---PSDDDIYDCKVEH   84 (100)
T ss_dssp             C---CCTTCCEEEEEEC
T ss_pred             c---CCCCCEEEEEEEE
Confidence            3   4677789999964

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6e-05  Score=44.72  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             EecCCcEEEEEEEccC--CCCEEEEEecCC-CeE--EEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         18 GFLAVFSYSDKTVRDI--VKVRVSWVRRRD-WHI--LTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~--~~~~V~W~k~~~-~~~--l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+|+...|.-.-...  ....|.|-|..+ ..+  +-.+...+...+.|.+.     .+++|+|+++..+|+|+|--.+
T Consensus         8 GaL~~di~ldIP~fq~~~~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~-----~nGtLkIK~L~~~d~GtYkv~v   82 (101)
T d1hnfa1           8 GALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF-----KNGTLKIKHLKTDDQDIYKVSI   82 (101)
T ss_dssp             EETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC-----TTSCEEECSCCGGGCEEEEEEE
T ss_pred             ecccCCccccCCCccccCCcceeEEEecCCCcceeeecccCCCCCCCceEEEc-----cCCcEEeeeeeecCCCcEEEEE
Confidence            3556665554332222  224799988532 332  22245566667788887     5789999999999999999999


Q ss_pred             c-CCCC--eeEEEEeceec
Q psy14080         93 Q-PYTT--TSHSQNAPGLG  108 (113)
Q Consensus        93 ~-~~~~--~s~~~~L~V~g  108 (113)
                      . +++.  .++++.|.|++
T Consensus        83 Yd~~Gk~vlektf~LkI~E  101 (101)
T d1hnfa1          83 YDTKGKNVLEKIFDLKIQE  101 (101)
T ss_dssp             EETTSCEEEEEEEEEEEEC
T ss_pred             EcCCCcEeeeeeEEEEeeC
Confidence            4 5554  47888888763

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.76  E-value=0.00024  Score=42.25  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEE
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      .+|+.|......  .+..|+.++|.|.+.+. | .-.|.|+|.  +..+..+..    ....|.-|.+.       ..|.
T Consensus         3 ~v~P~V~v~~~~--~~~~~~~~tL~C~v~gF~P~~i~v~W~~n--g~~~~~~~~~~~~~~~~dgty~~~-------S~L~   71 (101)
T d1fnga1           3 NVAPEVTVLSRS--PVNLGEPNILICFIDKFSPPVVNVTWLRN--GRPVTEGVSETVFLPRDDHLFRKF-------HYLT   71 (101)
T ss_dssp             CBCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEET--TEEECSSEEECCCEECSSSCEEEE-------EEEE
T ss_pred             CcCCeEEEeCCC--cccCCCCEEEEEEEEeEECCCCEEEEEEC--CeecCCCcEeCeEEECCCCcEEEE-------EEeE
Confidence            456666654222  24568899999999986 3 458999873  333332211    12335556543       2566


Q ss_pred             EccCCCCCCEEEEEeecCC
Q psy14080         77 IKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~   95 (113)
                      |..   ++...|.|.+...
T Consensus        72 v~~---~~~~~ytC~V~H~   87 (101)
T d1fnga1          72 FLP---STDDFYDCEVDHW   87 (101)
T ss_dssp             ECC---CTTCCEEEEEECT
T ss_pred             EcC---CCCCEEEEEEEEC
Confidence            543   4556899999643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.00016  Score=42.65  Aligned_cols=77  Identities=9%  Similarity=0.153  Sum_probs=44.1

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      .|+.|......  ....|++++|.|.+.+.  ..-.|.|.|.+  ..+...   ......|..|...       ..|.| 
T Consensus         3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g--~~~~~~~~~~~~~~~dgtf~~~-------s~l~v-   70 (99)
T d1lk2b_           3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNG--KKIPKVEMSDMSFSKDWSFYIL-------AHTEF-   70 (99)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETT--EECTTCEEEEEEECTTCCEEEE-------EEEEE-
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCC--eecCCcEECceeECCCCCEEEE-------EEeEe-
Confidence            35555443221  23468999999999986  34579998743  222111   1112334555442       24554 


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                        ..+|.+.|+|.+..
T Consensus        71 --~~~~~~~ytC~V~H   84 (99)
T d1lk2b_          71 --TPTETDTYACRVKH   84 (99)
T ss_dssp             --CCCSSCCEEEEEEC
T ss_pred             --cCcCCCEEEEEEEe
Confidence              35677789999964

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00041  Score=40.53  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEcc-CCCCEEEEEecCCCeEEEecceE-E--cCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRD-IVKVRVSWVRRRDWHILTSGVLT-Y--TNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~-~~~~~V~W~k~~~~~~l~~~~~~-~--~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .|+.++|.|.+.+ .|.+.|.|++.  +..+...... .  ..++.|.+.       ..|.|.   ..+...|.|.+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n--~~~~~~~~~~~~~~~~~g~y~v~-------S~L~v~---~~~~~~~tC~V~h   81 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLEN--GEELNAINTTVSQDPETELYAVS-------SKLDFN---MTTNHSFMCLIKY   81 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEES--SCEECCSEEEEEECTTTCCEEEE-------EEEEEE---TTSCEEEEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecC--CcEecccceeeEecCCCccEEEE-------EEEEcc---CCccceEEEEEEe
Confidence            4788999999997 47789999873  2233221111 1  234566654       256654   4567899999964

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00043  Score=40.53  Aligned_cols=75  Identities=11%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecce-----EEcCCCCEEEEEeCCCCcEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGVL-----TYTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~~-----~~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      +|+.|...     ....++.++|.|.+.+. | .-.|.|+|.  +..+..+..     ....+.-|...       ..|.
T Consensus         3 vpP~V~v~-----~~~~~~~~tL~C~~~gFyP~~i~v~W~~d--g~~~~~~~~~~~~~~~~~~~t~~~~-------s~l~   68 (94)
T d1de4a1           3 VPPLVKVT-----HHVTSSVTTLRCRALNYYPQNITMKWLKD--KQPMDAKEFEPKDVLPNGDGTYQGW-------ITLA   68 (94)
T ss_dssp             BCCEEEEE-----EEECSSCEEEEEEEEEEBSSCCEEEEEET--TEECCGGGSCCCEEEECTTSCEEEE-------EEEE
T ss_pred             CCCEEEEE-----EcCCCCCEEEEEEEeeEECCCCEEEEEEC--CEECccCcccccceEeCCCceEEEE-------EEEE
Confidence            56666531     12357889999999985 3 458999873  333221110     01122223322       1344


Q ss_pred             EccCCCCCCEEEEEeecCC
Q psy14080         77 IKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~   95 (113)
                         +.++|...|+|.+...
T Consensus        69 ---v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          69 ---VPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             ---ECTTCGGGEEEEEECT
T ss_pred             ---ECCCCCCEEEEEEEeC
Confidence               4456777899999643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00076  Score=39.18  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             ecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecc---eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         19 FLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGV---LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~---~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..|+.++|.|.+.+. | +-.|.|.|.+  ..+....   .....++.|...       ..|.|   ..+|...|.|.+.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng--~~~~~~~~~~~~~~~~~t~~~~-------s~l~~---~~~~~~~ytC~V~   80 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAG--EVQEPELRGDVLHNGNGTYQSW-------VVVAV---PPQDTAPYSCHVQ   80 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETT--EECCCSEEEEEEETTTTEEEEE-------EEEEE---CTTCCSCEEEEEE
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECC--EECCCcEEeeeecCCCCeEEEE-------EEeEe---CCCCCCEEEEEEE
Confidence            358899999999986 3 3478998743  2222111   111233444432       13444   4567778999995


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        81 H   81 (94)
T d1t7va1          81 H   81 (94)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.30  E-value=0.0014  Score=38.36  Aligned_cols=65  Identities=22%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             EecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         18 GFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...|++++|.|.+.+..  .-.|.|+|.+  ..+..+    ......|.-|.+.          ..-.+..+|.+.|+|.
T Consensus        15 ~~~~~~~tL~C~v~~F~P~~i~v~W~~~g--~~~~~~~~~~~~~~~~dgtf~~~----------s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1          15 QPLQHHNLLVCSVNGFYPGSIEVRWFRNG--QEEKTGVVSTGLIQNGDWTFQTL----------VMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEETT--EECCSSEEECCCEECSSSCEEEE----------EEEECCCCTTCEEEEE
T ss_pred             cccCCceEEEEEEeeeECCCcEEEEEECC--EEcCCCCEECeEEeCCCcEEEEE----------EEeeEcCCCCCEEEEE
Confidence            45578889999999853  3589998742  222111    1111223344332          2224567888999999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus        83 V~H   85 (98)
T d1d5mb1          83 VEH   85 (98)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            964

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.27  E-value=0.001  Score=39.17  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQI   77 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I   77 (113)
                      .|+.|......  .+..|++++|.|.+.+.  .+-.|.|+|.  +..+..+.    .....|.-|.+.       ..|.|
T Consensus         2 ~PP~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~n--g~~~~~~~~~~~~~~~~dgty~~~-------s~L~v   70 (98)
T d1hdmb1           2 RPPSVQVAKTT--PFNTREPVMLACYVWGFYPAEVTITWRKN--GKLVMHSSAHKTAQPNGDWTYQTL-------SHLAL   70 (98)
T ss_dssp             BCCEEEEEECC--CCSSSCSEEEEEEEEEEBSSCCEEEEEET--TEECCCCCSBCCCEECSSSCEEEE-------EEEEE
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCCEEEEEEC--CEeccCCeEeCceEECCCCCEEEE-------EEeEc
Confidence            35555543222  24567899999999986  3568999873  33332221    111234455443       14555


Q ss_pred             ccCCCCCCEEEEEeecCC
Q psy14080         78 KFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        78 ~~v~~~D~G~Y~C~~~~~   95 (113)
                         ..++...|.|.+...
T Consensus        71 ---~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          71 ---TPSYGDTYTCVVEHI   85 (98)
T ss_dssp             ---CCCTTCCEEEEEECT
T ss_pred             ---CCCCCCEEEEEEEeC
Confidence               355666899999643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.26  E-value=0.0023  Score=37.53  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=44.2

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccC--CCCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEc
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDI--VKVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIK   78 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~--~~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~   78 (113)
                      |+.|......  .+..|+.++|.|.+.+.  ..-.|.|.|.  +..+..+.    .....|+-|...       ..|.|.
T Consensus         5 ~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~n--g~~~~~~~~~~~~~~~~dgtf~~~-------s~l~v~   73 (99)
T d1uvqa1           5 VPEVTVFSKS--PVTLGQPNTLICLVDNIFPPVVNITWLSN--GQSVTEGVSETSFLSKSDHSFFKI-------SYLTFL   73 (99)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEET--TEEECTTEEECCCEECTTSCEEEE-------EEEEEC
T ss_pred             CCEEEEEcCC--cccCCCcEEEEEEEEEEECCCCEEEEEEC--CEeccCCcEecceEECCCCCEEEE-------EEEEEc
Confidence            5555443222  24578999999999986  3457999873  33333221    112234445432       245554


Q ss_pred             cCCCCCCEEEEEeecC
Q psy14080         79 FLQKRDNGTYECQAQP   94 (113)
Q Consensus        79 ~v~~~D~G~Y~C~~~~   94 (113)
                         .+|...|.|.+..
T Consensus        74 ---~~~~~~ytC~V~H   86 (99)
T d1uvqa1          74 ---PSADEIYDCKVEH   86 (99)
T ss_dssp             ---CCTTCCEEEEEEC
T ss_pred             ---CCCCCEEEEEEEe
Confidence               4556689999964

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00096  Score=38.65  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=43.5

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecce--EEcCCCCEEEEEeCCCCcEEEEEcc
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGVL--TYTNDARFQVIHTDGSDDWNLQIKF   79 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~~--~~~~~~R~~~~~~~~~~~~~L~I~~   79 (113)
                      .|+.|.-....    ..+..++|.|.+.+. | +-.|.|+|.+  ..+..+..  ....|+.|.+.       ..|.|. 
T Consensus         2 ~PP~V~v~~~~----~~~~~~~L~C~~~gF~P~~i~v~W~~ng--~~~~~~~~~~~~~~dgty~~~-------S~l~v~-   67 (91)
T d3frua1           2 EPPSMRLKARP----GNSGSSVLTCAAFSFYPPELKFRFLRNG--LASGSGNCSTGPNGDGSFHAW-------SLLEVK-   67 (91)
T ss_dssp             BCCEEEEEEEE----CSTTEEEEEEEEEEEBSSCCEEEEEETT--EECCCCEEEEEECSSSCEEEE-------EEEEEE-
T ss_pred             CCCEEEEEecC----CCCCCEEEEEEEEeEECCCCEEEEEECC--EeCCccCccceecCCCCEeEE-------EEEEEC-
Confidence            46666543221    235689999999986 3 4589998743  32222111  12335556543       145554 


Q ss_pred             CCCCCCEEEEEeecC
Q psy14080         80 LQKRDNGTYECQAQP   94 (113)
Q Consensus        80 v~~~D~G~Y~C~~~~   94 (113)
                        .+|...|.|.+..
T Consensus        68 --~~~~~~ytC~V~H   80 (91)
T d3frua1          68 --RGDEHHYQCQVEH   80 (91)
T ss_dssp             --TTCGGGEEEEEEC
T ss_pred             --CCCCCEEEEEEEe
Confidence              4566789999964

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0007  Score=40.17  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc-----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV-----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~-----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .+++++|.|.+.+..  +..|.|++.+  ..+..+.     .....++.|.+.       ..|.|..-+-.+...|.|.+
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g--~~~~~~~~~~~~~~~~~~gtys~~-------S~L~v~~~~W~~g~~ytC~V   88 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNE--VQLPDARHSTTQPRKTKGSGFFVF-------SRLEVTRAEWEQKDEFICRA   88 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETT--EECCGGGEEECCCEECSSSCEEEE-------EEEEECHHHHTTGGGEEEEE
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECC--EECCCceeEeeeeEecCCCCEEEE-------EEEEECHHHcCCCCEEEEEE
Confidence            467899999998752  4689998732  2222211     112345667654       27777766655667899999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        89 ~H   90 (105)
T d1fp5a2          89 VH   90 (105)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0008  Score=39.23  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             cCCceeeEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce----EEcCCCCEEEEEeCCCCcEEEE
Q psy14080          3 AAPGGILTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL----TYTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         3 ~~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~----~~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      |.|+.+......    ..++.++|.|.+.+..  +-.|.|.+.  +..+..+..    ....+..|...       ..|.
T Consensus         1 ~~PP~v~v~~~~----~~~~~~~L~C~~~gFyP~~i~vtW~~~--g~~~~~~~~~~~~~~~~~~~~~~~-------s~l~   67 (95)
T d1k5na1           1 ADPPKTHVTHHP----ISDHEATLRCWALGFYPAEITLTWQRD--GEDQTQDTELVETRPAGDRTFQKW-------AAVV   67 (95)
T ss_dssp             CBCCEEEEEEEE----EETTEEEEEEEEEEEBSSCCEEEEEET--TEECGGGCEECCCEECSSSCEEEE-------EEEE
T ss_pred             CcCCccEEEecc----CCCCCEEEEEEEEeEeCCCCEEEEEEC--CEEcCCCceeccEEcCCCCeEEEE-------EEEE
Confidence            567776653321    2356899999999863  457899874  333222111    11223334332       2444


Q ss_pred             EccCCCCCCEEEEEeecCC
Q psy14080         77 IKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~   95 (113)
                      |.   .++...|.|++...
T Consensus        68 v~---~~~~~~ytC~V~H~   83 (95)
T d1k5na1          68 VP---SGEEQRYTCHVQHE   83 (95)
T ss_dssp             EE---TTCGGGEEEEEECT
T ss_pred             EE---cCCCCEEEEEEEEC
Confidence            43   45556899999643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.0047  Score=36.14  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEEccC-CC-C-EEEEEecCCCeEEE-ecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-VK-V-RVSWVRRRDWHILT-SGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~~-~-~V~W~k~~~~~~l~-~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .++++.|.|.+.+. +. . .|.|.+ ++...-. ........++.|.+.       ..|.|..-+=.....|+|.+..
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~-~~~~~~~~~~~~~~~~~gtys~~-------S~L~v~~~~W~~~~~ytC~V~H   88 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDITTVNFPPALASGGRYTMS-------NQLTLPAVECPEGESVKCSVQH   88 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESC-CCSSCEEEECCCEECSSSCEEEE-------EEEEECGGGSCTTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEcc-CCCcCceeEeeeEecCCCCEEEE-------EEEEEeHHHccCCCEEEEEEEE
Confidence            46889999999985 43 2 456754 3221111 111123356677654       2677777765556789999954

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.09  E-value=0.0021  Score=37.51  Aligned_cols=65  Identities=25%  Similarity=0.433  Sum_probs=35.2

Q ss_pred             EecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         18 GFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ...|+.++|.|.+.+..  +-.|.|.|.+  ..+..+.    .....|+-|.+.       ..|.|   ..++...|.|.
T Consensus        13 ~~~~~~~tL~C~~~gF~P~~i~v~W~~ng--~~~~~~~~~~~~~~~~dgty~~~-------s~l~v---~~~~~~~ytC~   80 (97)
T d1uvqb1          13 EALNHHNLLVCSVTDFYPGQIKVRWFRND--QEETAGVVSTPLIRNGDWTFQIL-------VMLEM---TPQRGDVYTCH   80 (97)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEETT--EEECTTEEECCCEECSSSCEEEE-------EEEEC---CSCTTCCEEEE
T ss_pred             ccCCCCEEEEEEEeeeECCCeEEEEEECC--EEcCCCcEeceeecCCCceEEEE-------EEecc---CCCCCCEEEEE
Confidence            45578899999998763  4689998743  2222211    112234445443       13444   56677899999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus        81 V~H   83 (97)
T d1uvqb1          81 VEH   83 (97)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            964

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00029  Score=41.93  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             ecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc------eE--EcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEE
Q psy14080         19 FLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV------LT--YTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTY   88 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~------~~--~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
                      ..|++++|.|.+.+..  +-.|.|++.  +..+..+.      ..  ...++.|.+.       ..|.|..-+-.....|
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~--g~~~~~~~~~t~~~~~~~~~~~gtys~~-------S~L~v~~~~w~~g~~y   88 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQG--SQELPREKYLTWASRQEPSQGTTTFAVT-------SILRVAAEDWKKGDTF   88 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEET--TEECCGGGSEECCCEECSCSSSCCEEEE-------EEEEEEHHHHHHTCCE
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEEC--CeEcCCCceEcccceecccCCCCcEEEE-------EEEEEcHHHhCCCCEE
Confidence            4578999999998863  348999873  22222110      00  1235566653       2566665554446799


Q ss_pred             EEeecC
Q psy14080         89 ECQAQP   94 (113)
Q Consensus        89 ~C~~~~   94 (113)
                      .|.+..
T Consensus        89 tC~V~H   94 (108)
T d1ow0a2          89 SCMVGH   94 (108)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999953

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.003  Score=37.00  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +.+++|.|.+.+..  +-.|.|++.  +..+..+.    .....|+.|.+.       ..|.|..-+-.....|+|.+..
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~--g~~~~~~~~t~~~~~~~dgtys~~-------S~L~v~~~~w~~~~~ytC~V~H   90 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVD--GTPVTAGMETTQPSKQSNNKYMAS-------SYLTLTARAWERHSSYSCQVTH   90 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET--TEEECTTEEECCCEECTTSCEEEE-------EEEEEEHHHHTTCCEEEEEEEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEEC--CEECCCCeEecccEEcCCCCEEEE-------EEEEECHHHhCCCCEEEEEEEE
Confidence            56799999998763  358999873  33222211    112346677664       2677766665557899999964


Q ss_pred             C
Q psy14080         95 Y   95 (113)
Q Consensus        95 ~   95 (113)
                      .
T Consensus        91 ~   91 (102)
T d1q0xl2          91 E   91 (102)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.99  E-value=0.0019  Score=38.24  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=39.0

Q ss_pred             EecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         18 GFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        18 v~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      +.+|+.++|.|.+.+..  +-.|.|.|.+  ..+...   ......|.-|.+.       ..|.|.   ++|...|.|.+
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng--~~~~~~~~~~~~~~~dgty~~~-------S~L~v~---~~~~~~ytC~V   82 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHS--VPVEGFGPTFVSAVDGLSFQAF-------SYLNFT---PEPSDIFSCIV   82 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETT--EECSSCCCEEEEEETTTEEEEE-------EEEEEC---CCTTCCEEEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECC--eecCCcEeceEEeCCCCcEEEE-------EEEEEe---cCCCCEEEEEE
Confidence            45699999999999863  4578998743  222110   0111234445443       145543   45666799999


Q ss_pred             cCC
Q psy14080         93 QPY   95 (113)
Q Consensus        93 ~~~   95 (113)
                      ...
T Consensus        83 ~H~   85 (103)
T d1hdma1          83 THE   85 (103)
T ss_dssp             EET
T ss_pred             EeC
Confidence            654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.96  E-value=0.00053  Score=42.01  Aligned_cols=80  Identities=18%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             CceeeEeecceEEEecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce---------EEcCCCCEEEEEeCCCCcE
Q psy14080          5 PGGILTAFGQISTGFLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL---------TYTNDARFQVIHTDGSDDW   73 (113)
Q Consensus         5 p~~i~~~~~~~~tv~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~---------~~~~~~R~~~~~~~~~~~~   73 (113)
                      |+.|.-..+...-...+..++|.|.+.+..  .-.|.|++.  +..+..+..         ....|..|.+.       .
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~--g~~~~~~~~t~~~~~~~~~~~~d~tys~s-------S   74 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN--GKEVHSGVSTDPQPLKEQPALNDSRYSLS-------S   74 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET--TEEECSSEEECSSCEESCTTSTTCCEEEE-------E
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEEC--CEEccCcEEecceeeeecccCCCCeEEEE-------E
Confidence            555554332221123467899999998763  347999873  332221111         01235667654       2


Q ss_pred             EEEEccCCCCCC-EEEEEeec
Q psy14080         74 NLQIKFLQKRDN-GTYECQAQ   93 (113)
Q Consensus        74 ~L~I~~v~~~D~-G~Y~C~~~   93 (113)
                      .|.|..-+=+|. ..|.|.+.
T Consensus        75 ~L~v~~~~W~~~g~~ytC~V~   95 (127)
T d1ogae2          75 RLRVSATFWQNPRNHFRCQVQ   95 (127)
T ss_dssp             EEEEEHHHHTCTTCEEEEEEE
T ss_pred             EEEECHHHhCCCCCEEEEEEE
Confidence            677766554564 47999995

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00095  Score=39.26  Aligned_cols=64  Identities=11%  Similarity=0.170  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccC-CCCCCEEEEEeecCCCCe
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFL-QKRDNGTYECQAQPYTTT   98 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~   98 (113)
                      .|.+|+|.|.....  ..|.|-|.  ...+.      ..+++            .|...+. ..+|+|-|.|-... ...
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn--~~~i~------g~~~~------------~L~L~~FSE~e~SGyY~C~~~~-~~~   69 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKN--GQELP------QKHDK------------HLVLQDFSEVEDSGYYVCYTPA-SNK   69 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEET--TEEEC------SCCCS------------EEEEESCCTTTSCEEEEEECSS-CCC
T ss_pred             eCCEEEEECCCCCC--CceEEeec--cccCC------CCCCc------------EEEEccccccccCcceEEecCC-CCc
Confidence            49999999997754  35999542  22221      11121            4444554 56999999996433 222


Q ss_pred             eEEEEece
Q psy14080         99 SHSQNAPG  106 (113)
Q Consensus        99 s~~~~L~V  106 (113)
                      +...+|..
T Consensus        70 ~~~LYLKA   77 (100)
T d1jbja2          70 NTYLYLKA   77 (100)
T ss_dssp             CCCEEECC
T ss_pred             ceEEEEEE
Confidence            33455543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0072  Score=35.54  Aligned_cols=78  Identities=9%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEe-cceEEcCCCCEEEEEeCCCCcEEEEEccCCC--CCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTS-GVLTYTNDARFQVIHTDGSDDWNLQIKFLQK--RDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~-~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~--~D~G~Y~C~~~~   94 (113)
                      ..++++|-|.+.+..  +-.|.|.+.+....... .......++.|...       ..|.|..-+-  .-...|+|.+..
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~-------S~L~v~~~eW~~~~~~~ytC~V~H   92 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAAT-------SQVLLPSKDVMAGTDEHVVCKVQH   92 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEE-------EEEEECTTCC---CCCEEEEEEEC
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEE-------EEEEEcHHHhccCCCCEEEEEEEE
Confidence            357899999999853  45899987543211100 00111234445432       2566655442  123479999965


Q ss_pred             C-CCeeEEEEe
Q psy14080         95 Y-TTTSHSQNA  104 (113)
Q Consensus        95 ~-~~~s~~~~L  104 (113)
                      . ...+..+.+
T Consensus        93 ~~~~~~~~v~~  103 (105)
T d1dn0b2          93 PNGNKEKNVPL  103 (105)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCCEEeEEec
Confidence            3 344444433

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.0016  Score=38.53  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc-----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV-----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~-----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      .+..++|.|.+.+..  +-.|.|.+.  +..+..+.     .....|+.|.+.       ..|.|..-+-.....|+|.+
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~n--g~~~~~~~~~~~~~~~~~dgtys~~-------S~L~v~~~~W~~g~~ytC~V   89 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKID--GSERQNGVLNSWTDQDSKDSTYSMS-------STLTLTKDEYERHNSYTCEA   89 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET--TEEECTTEEEEECCCCTTTCCEEEE-------EEEEEEHHHHHTCCEEEEEE
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEEC--CEEccCCeEeccccEecCCCCEEEE-------EEEEECHHHhCCCCEEEEEE
Confidence            367899999998763  458999863  33222211     111235666654       26776655533466899999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        90 ~H   91 (107)
T d1mjul2          90 TH   91 (107)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.0015  Score=37.60  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=38.0

Q ss_pred             ecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         19 FLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..++.++|.|.+.+..  +-.|.|.|.+  ..+..+.    .....+.-|...       ..|.|.   .+|...|.|.+
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~~gt~~~~-------s~l~v~---~~~~~~ytC~V   80 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNG--EELIQDMELVETRPAGDGTFQKW-------ASVVVP---LGKEQYYTCHV   80 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETT--EEECTTCEECCCEECSSSCEEEE-------EEEEEE---SSTTTTCEEEE
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECC--EEeCCCEEECcEecCCCCcEEEE-------EEEEec---CcCCCEEEEEE
Confidence            4467899999999863  3478998743  3332221    122334455442       255554   33445799999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        81 ~H   82 (89)
T d2mhaa1          81 YH   82 (89)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.76  E-value=0.0016  Score=38.24  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=41.1

Q ss_pred             cCCcEEEEEEEccC-C-CCEEEEEecCCC--eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDW--HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~--~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|.|.+.+. | +-.|.|.+.+..  .... .......|+.|.+.       ..|.|..-+=.....|.|.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~-~~~~~~~dgtys~~-------S~L~v~~~~W~~~~~ytC~V~H   88 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKN-TEPVLDSDGSYFMY-------SKLRVEKKNWVERNSYSCSVVH   88 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE-CCCEECTTSCEEEE-------EEEEEEHHHHHTCCCEEEEEEC
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE-ccceeCCCCcEEEE-------EEEEECHHHcCCCCEEEEEEEe
Confidence            47889999999875 3 458999874311  1111 11122346677654       2677765543345679999964

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.67  E-value=0.0063  Score=35.04  Aligned_cols=77  Identities=9%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             CCceeeEeecceEEEecCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecceE-----EcCCCCEEEEEeCCCCcEEEE
Q psy14080          4 APGGILTAFGQISTGFLAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGVLT-----YTNDARFQVIHTDGSDDWNLQ   76 (113)
Q Consensus         4 ~p~~i~~~~~~~~tv~~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~~~-----~~~~~R~~~~~~~~~~~~~L~   76 (113)
                      +|+.|......    ..++.++|.|.+.+. + +-.|.|.|.+  ..+..+...     ...+.-|...       ..|.
T Consensus         2 vpP~V~v~~~~----~~~~~~~L~C~~~gFyP~~i~v~W~~~g--~~~~~~~~~~~~~~~~~~~ty~~~-------s~l~   68 (94)
T d1hyrc1           2 VPPMVNVTRSE----ASEGNITVTCRASGFYPWNITLSWRQDG--VSLSHDTQQWGDVLPDGNGTYQTW-------VATR   68 (94)
T ss_dssp             BCCEEEEEECC----CSSSEEEEEEEEEEEBSSCCEEEEEETT--EECCSTTSEECCCEECSSSCEEEE-------EEEE
T ss_pred             cCCEEEEEecC----CCCCCEEEEEEEEEEECCCcEEEEeECC--eEcCCCeEEcCceEECCCCcEEEE-------EEEE
Confidence            56666643322    235679999999986 2 4589998843  222221111     1123334332       1444


Q ss_pred             EccCCCCCCEEEEEeecCCC
Q psy14080         77 IKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        77 I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      |.   .+|...|.|.+...+
T Consensus        69 v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          69 IC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             EE---TTCGGGEEEEEEETT
T ss_pred             Ec---CCCCCEEEEEEEECC
Confidence            43   445557999996543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0015  Score=37.81  Aligned_cols=73  Identities=10%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCC-CCCEEEEEeecCC--C
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQK-RDNGTYECQAQPY--T   96 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~~~--~   96 (113)
                      .|.+|+|.|...  ....|.|-|.+  ..+.. .   ..+.-....      .-.|.+.+..+ +++|-|.|.+...  .
T Consensus         9 SGTtV~LTCP~~--~~~~i~W~~n~--~~~~~-~---~~~~~~~~~------~~~l~L~dfSe~e~sGyY~C~~~~~~~~   74 (91)
T d1xiwa_           9 SGTTVILTCPQY--PGSEILWQHND--KNIGG-D---EDDKNIGSD------EDHLSLKEFSELEQSGYYVCYPRGSKPE   74 (91)
T ss_dssp             ETTEEEEECSSC--TTSCEEEEETT--EEESS-S---CSCTTEEEE------TTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             eCCEEEEECCCC--CCCceeeeecc--ccccC-C---Ccccccccc------cceEEecccCccccCceEEEEcCCCCCC
Confidence            499999999743  33569997643  21110 0   011111111      22566688765 8999999998432  3


Q ss_pred             CeeEEEEece
Q psy14080         97 TTSHSQNAPG  106 (113)
Q Consensus        97 ~~s~~~~L~V  106 (113)
                      ..+...+|.+
T Consensus        75 ~~~~~LYLKA   84 (91)
T d1xiwa_          75 DANFYLYLRA   84 (91)
T ss_dssp             GCCEEEEEEE
T ss_pred             CcceEEEEEe
Confidence            3344455554

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.0018  Score=38.02  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEe---cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTS---GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~---~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      ...++|.|.+.+..  +-.|.|.+.+  ..+..   .......|+.|.+.       ..|.|..-+-.+...|.|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g--~~~~~~~~~~~~~~~dgt~s~~-------S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNG--QPQENYKNTPPTMDTDGSYFLY-------SKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETT--EECSSEEECCCEECTTSCEEEE-------EEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECC--eeccCcEEcccEeCCCCCEEEE-------EEEEECHHHhCCCCEEEEEEEeC
Confidence            56799999998763  4579998753  21110   11122345566553       25777766555667899999643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.59  E-value=0.002  Score=37.61  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=37.4

Q ss_pred             cCCcEEEEEEEccC-CC-CEEEEEecCCCeEEEe---cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-VK-VRVSWVRRRDWHILTS---GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~~-~~V~W~k~~~~~~l~~---~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .++.++|.|.+.+. |. -.|.|+|..  .....   .......|+.|.+.       ..|.|..   +|...|.|.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~--~~~~~~~~~~~~~~~dgty~~~-------S~L~v~~---~~~~~ytC~V~H   82 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGE--QEQQGTQLGDILPNANWTWYLR-------ATLDVAD---GEAAGLSCRVKH   82 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETT--EECTTCEECCCEECTTSCEEEE-------EEEEEEG---GGCTTEEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECc--ccCCCceeCccEeCCCCcEEEE-------EEEEEeC---ccCCEEEEEEEe
Confidence            45689999999876 33 379999843  21110   11112345556543       2566653   456689999953

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0051  Score=36.20  Aligned_cols=65  Identities=9%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             CCcEEEEEEEccC-C-CCEEEEEecCCCeEEEecce-----EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         21 AVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSGVL-----TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        21 G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~~~-----~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      +.+++|.|.+.+. + +-.|.|.+.+  ..+..+..     ....|+.|.+.       ..|.|..-+-.....|.|.+.
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng--~~~~~~~~~~~~~~~~~dgtys~~-------S~L~v~~~~W~~~~~ytC~V~   90 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDN--ALQSGNSQESVTEQDSKDSTYSLS-------STLTLSKADYEKHKVYACEVT   90 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETT--EECCSSEEEEECCCCTTTCCEEEE-------EEEEEEHHHHTTCCEEEEEEE
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECC--EECCCCEEEecccccCCCCcEEEE-------EEEEECHHHhCCCCEEEEEEE
Confidence            5789999999876 3 3589998743  22221111     11235667654       267776555334458999996


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        91 H   91 (107)
T d1c5cl2          91 H   91 (107)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0021  Score=37.60  Aligned_cols=66  Identities=11%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             cCCcEEEEEEEccC-C-CCEEEEEecCCCeEEEe---cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTS---GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~---~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .++.++|.|.+.+. + +-.|.|.+.+  .....   .......|+.|.+.       ..|.|..-+-.....|.|.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g--~~~~~~~~~~~~~~~dgtys~~-------S~L~v~~~~w~~g~~ytC~V~H   88 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNG--QPENNYKTTPPVLDSDGSFFLY-------SKLTVDKSRWQQGNVFSCSVMH   88 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETT--EEECCEEECCCEECTTSCEEEE-------EEEEEEHHHHHTTCCEEEEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECC--EECCCeEEcceEECCCCCEEEE-------EEEEECHHHcCCCCEEEEEEEe
Confidence            36789999999875 3 4589998743  22111   11122345566553       2677766554455679999964

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.55  E-value=0.0027  Score=37.54  Aligned_cols=65  Identities=9%  Similarity=0.072  Sum_probs=37.0

Q ss_pred             ecCCcEEEEEEEccCC--CCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         19 FLAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      ..+.+++|.|.+.+..  +-.|.|.|.+..  +..+   ......++.|...       ..|.|..-+-.  -.|+|.+.
T Consensus        22 ~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~gt~~~~-------S~L~v~~~~w~--~~ytC~V~   90 (107)
T d1hxmb2          22 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSN--TILGSQEGNTMKTNDTYMKF-------SWLTVPEKSLD--KEHRCIVR   90 (107)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEESSSC--CCCCCEECCCEECSSSEEEE-------EEEEECTGGGG--SCEEEEEE
T ss_pred             ccCCcEEEEEEEeEEeCCceEEEEEECCeE--ccCCEEccceecCCCeEEEE-------EEEEEecccCC--CeEEEEEE
Confidence            4467899999998763  347899874421  1111   0111234555543       25666543322  26999995


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        91 H   91 (107)
T d1hxmb2          91 H   91 (107)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0037  Score=36.75  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEccC-CC-CEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-VK-VRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~~-~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+.+++|.|.+.+. +. -.|.|++.  +..+..+..   ....++.|.+.       ..|.|..-+-.....|.|.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~--g~~~~~~~~~~~~~~~~~~y~~~-------S~L~v~~~~w~~~~~ytC~V~H   90 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLED--GQVMDVDLSTASTTQEGELASTQ-------SELTLSQKHWLSDRTYTCQVTY   90 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEET--TEECCGGGEEEEEEEETTEEEEE-------EEEEEEHHHHHTTCCEEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEEC--CEEccCCceeeeEeCCCCeEEEE-------EEEEECHHHcCCCCEEEEEEEE
Confidence            45689999999885 33 37899874  333222111   11234555543       2677666544446779999965


Q ss_pred             CC
Q psy14080         95 YT   96 (113)
Q Consensus        95 ~~   96 (113)
                      .+
T Consensus        91 ~~   92 (104)
T d1o0va1          91 QG   92 (104)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0025  Score=37.39  Aligned_cols=65  Identities=14%  Similarity=0.064  Sum_probs=38.8

Q ss_pred             cCCcEEEEEEEccC-C-CCEEEEEecCCC-eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI-V-KVRVSWVRRRDW-HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~-~-~~~V~W~k~~~~-~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|.|.+.+. + +-.|.|.+.... .....  .....++.|...       ..|.|..-+- +.|.|.|.+..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~--~~~~~~g~~s~~-------S~L~v~~~~w-~~~~ytC~V~H   86 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTV--SAVLQSGLYTLS-------SNTTVASGTW-PSASVTCLVAH   86 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEC--CCEEETTEEEEE-------EEEEEETTTT-TTSCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceee--eeecCCCCEEEE-------EEEEEchhhc-CCCeEEEEEEe
Confidence            47899999999975 2 458999553311 11111  111235556543       2677655443 36789999964

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0022  Score=37.64  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             cCCcEEEEEEEccCC-C---CEEEEEecCCCeEEE-ecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIV-K---VRVSWVRRRDWHILT-SGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~-~---~~V~W~k~~~~~~l~-~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|.|.+.+.. .   -.+.|++.+....-. ........+..|.+.       ..|.|..-+-.....|.|.+..
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~-------S~L~v~~~~w~~g~~~tC~V~H   87 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVT-------STLPVGTRDWIEGETYQCRVTH   87 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEE-------EEEECCHHHHHTTCCEEEEEEC
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEE-------EEEEEcHHHhCCCCeEEEEEEE
Confidence            468899999998753 2   256787765321100 011112235556543       2566554333336689999953

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0026  Score=37.32  Aligned_cols=65  Identities=8%  Similarity=0.027  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCC-CeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRD-WHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~-~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++++|.|.+.+..  +-.|.|.+... ..+...  .....++.|...       ..|.|..-+- +.+.|+|.+..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~--~~~~~~g~ys~~-------S~L~v~~~~w-~~~~ytC~V~H   86 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF--PAVLQSDLYTLS-------SSVTVTSSTW-PSQSITCNVAH   86 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC--CCEEETTEEEEE-------EEEEECTTTT-TTSCCEEEEEE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEec--ccccCCCCEEEE-------EEEEEehhHc-CCceEEEEEEE
Confidence            478999999999853  45899954331 111111  112235566543       2677776653 35679999964

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0041  Score=36.34  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEccC-C-CCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         21 AVFSYSDKTVRDI-V-KVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        21 G~~a~L~C~v~~~-~-~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      .+++.|.|.+.+. + +-.|.|+|..  ..+..+   ......|+.|.+.       ..|.|..-+-.....|.|.+...
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g--~~~~~~~~~~~~~~~dgtys~~-------S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNG--QPAENYKNTQPIMDTDGSYFVY-------SKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETT--EECCSEEECCCEECTTSCEEEE-------EEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECC--EEccCcEEeeeecCCCCcEEEE-------EEEEECHHHhCCCCEEEEEEEEC
Confidence            5679999999985 3 4589998743  221110   1112345566553       26666554434567899999643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0039  Score=36.44  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEec----ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSG----VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~----~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +..++|.|.+.+..  .-.|.|++.  +..+..+    ......|+.|.+.       ..|.|..-+-.....|.|.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~--g~~~~~~~~~~~~~~~~dgtys~~-------S~L~v~~~~w~~~~~ytC~V~H   90 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKAD--SSPVKAGVETTTPSKQSNNKYAAS-------SYLSLTPEQWKSHRSYSCQVTH   90 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEET--TEECCSSEEECCCEECTTSCEEEE-------EEEEECHHHHHHSSCEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEEC--CEECCCCEEeCCcEECCCCEEEEE-------EEEEECHHHhCCCCEEEEEEEE
Confidence            67899999999853  347999874  2222221    1112345666654       2677765553345579999965


Q ss_pred             CC
Q psy14080         95 YT   96 (113)
Q Consensus        95 ~~   96 (113)
                      ..
T Consensus        91 ~~   92 (102)
T d1rzfl2          91 EG   92 (102)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.92  E-value=0.01  Score=34.58  Aligned_cols=63  Identities=10%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCC--CeEEEecc----eEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRD--WHILTSGV----LTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~--~~~l~~~~----~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ...++|.|.+.+..  +-.|.|.|.+.  ......+.    .....|.-|...       ..|.|   .++|...|+|.+
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~-------s~l~v---~~~~~~~ytC~V   83 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKH-------IDVYV---DGGLEHVYSCRV   83 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEE-------EEEEE---CTTCGGGEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEE-------EEEEE---CCCCCCEEEEEE
Confidence            45799999999863  34789988542  11211111    111234445432       24555   445667899999


Q ss_pred             c
Q psy14080         93 Q   93 (113)
Q Consensus        93 ~   93 (113)
                      .
T Consensus        84 ~   84 (98)
T d1u58a1          84 K   84 (98)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0069  Score=35.34  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=38.3

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCC-eEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDW-HILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~-~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+.+++|.|.+.+..  +-.|.|.+.... .+.+ .......|+.|.+.       ..|.|..-+-. ...|.|.+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t-~~~~~~~~gtys~~-------S~L~v~~~~w~-~~~ytC~V~H   87 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLS-------SVVTVPSSSLG-TQTYICNVNH   87 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEECTTSCEEEE-------EEEEEEGGGGG-TCCCEEEEEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEE-CCCeECCCCCEEEE-------EEEEECccccC-CCeEEEEEEe
Confidence            367899999998763  457999543211 1111 11122345566553       26777654432 3469999964

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0043  Score=36.36  Aligned_cols=67  Identities=12%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             ecCCcEEEEEEEccCC----CCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         19 FLAVFSYSDKTVRDIV----KVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~----~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ..+++++|.|.+.+..    .-.+.|.+..  ..+...   ......++.|.+.       ..|.|..-+=.....|.|.
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~--~~~~~~~~~~~~~~~~gtys~~-------S~L~v~~~~W~~g~~ytC~   86 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDG--VEVHNAKTKPREEQYNSTYRVV-------SVLTVLHQDWLNGKEYKCK   86 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETT--EEECCCEECCCEECTTSCEEEE-------EEEECCHHHHHTTCCEEEE
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCC--eECCCcEECCcEECCCCcEEEE-------EEEEEcHHHcCCCCEEEEE
Confidence            3478999999998752    2367787633  222111   1122345666653       2666665543345589999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus        87 V~H   89 (105)
T d1l6xa1          87 VSN   89 (105)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            964

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.70  E-value=0.003  Score=37.11  Aligned_cols=65  Identities=15%  Similarity=0.159  Sum_probs=39.3

Q ss_pred             CCcEEEEEEEccCC--CCEEEEEecCCCeEEEecce---EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         21 AVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL---TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        21 G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~---~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +.+++|.|.+.+..  +-.|.|.+.  +..+..+..   ....++.|.+.       ..|.|..-+-++...|.|.+..
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~--g~~~~~~~~~~~~~~~~~tys~~-------S~l~v~~~~w~~~~~ytC~V~H   89 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKAN--GATINDGVKTTKPSKQGQNYMTS-------SYLSLTADQWKSHNRVSCQVTH   89 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEET--TEEECSSCBCCCCBCSSSCEEEE-------EBCCEEHHHHHTCSCEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEEC--CEECCCCEEeccccCCCceEEEE-------EEEEEcHHHcCCCCEEEEEEEE
Confidence            67899999998853  348999873  332322111   11235566553       2455555554556689999964

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.69  E-value=0.0064  Score=36.55  Aligned_cols=67  Identities=13%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             ecCCcEEEEEEEccC-C---CCEEEEEecCCCeEEEec---ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEe
Q psy14080         19 FLAVFSYSDKTVRDI-V---KVRVSWVRRRDWHILTSG---VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQ   91 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~-~---~~~V~W~k~~~~~~l~~~---~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
                      ..+++++|.|.+.+. +   .-.|.|++.+  ..+...   ......|.+|.+.       ..|.|..-+=.....|+|.
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g--~~~~~~~~~~~~~~~~gt~s~~-------S~L~v~~~eW~~g~~ytC~  100 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNN--VEVHTAQTQTHREDYNSTLRVV-------SALPIQHQDWMSGKEFKCK  100 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETT--EECSSTTCBCCEEECSSSEEEE-------EEEECCHHHHHTTCEEEEE
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCC--cccCCCEECccEECCCCcEEEE-------EEEEEeHHHhCCCCeEEEE
Confidence            347899999999875 2   3468898743  221111   1112345666653       2566544432345679999


Q ss_pred             ecC
Q psy14080         92 AQP   94 (113)
Q Consensus        92 ~~~   94 (113)
                      +..
T Consensus       101 V~H  103 (119)
T d1igtb3         101 VNN  103 (119)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.0056  Score=35.80  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEEccCC-C---CEEEEEecCCCeEEEe--cceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeec
Q psy14080         20 LAVFSYSDKTVRDIV-K---VRVSWVRRRDWHILTS--GVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQ   93 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~-~---~~V~W~k~~~~~~l~~--~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (113)
                      .+++++|.|.+.+.. .   -.|.|++.+ ..+...  .......++.|.+.       ..|.|..-+=.....|+|.+.
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g-~~~~~~~~~~~~~~~~gtys~~-------S~L~v~~~~W~~g~~~tC~V~   86 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDD-VEVHTAQTHAPEKQSNSTLRSV-------SELPIVERDWLNGKTFKCKVN   86 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESS-CEECCCEECCCEECTTSCEEEE-------EEEECCHHHHHTTCCEEEEEE
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECC-ccccCCEECCcEECCCCCEEEE-------EEEEECHHHhcCCCEEEEEEE
Confidence            467899999998753 2   478898754 222111  01112335556543       256554433223456999996


Q ss_pred             C
Q psy14080         94 P   94 (113)
Q Consensus        94 ~   94 (113)
                      .
T Consensus        87 H   87 (103)
T d1i1ca1          87 S   87 (103)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.076  Score=29.84  Aligned_cols=57  Identities=12%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCCC
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTT   97 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   97 (113)
                      +-.+|.|.|   +.....|.|+|-  +..+.             . .+.++.  +|-+-+.-..=.|+|.|......+
T Consensus        16 ~dg~V~L~C---n~~~k~i~W~kd--g~~i~-------------~-~~~~~k--tlnLG~~~~DPRG~Y~C~~~~~~s   72 (81)
T d1sy6a1          16 EDGSVLLTC---DAEAKNITWFKD--GKMIG-------------F-LTEDKK--KWNLGSNAKDPRGMYQCKGSQNKS   72 (81)
T ss_dssp             SSSEEEEEE---CSCSSEEEEEET--TEEEE-------------E-EESSCC--CEEEEEGGGCCEEEEEEESSSSCC
T ss_pred             cCCeEEEEe---CCCCcEEEEecC--CeEee-------------c-ccCCcc--eeecCCcccCCCcceEcCCCCcCC
Confidence            356899999   455568999973  22211             1 111222  444455666678999998754333

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.00034  Score=41.27  Aligned_cols=67  Identities=15%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             cCCcEEEEEEEccC--C-CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDI--V-KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~--~-~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      .+++|+|.|.+.+.  + .-.|.|++.+..... ........++.|.+.       ..|.|..-+-.....|+|.+..
T Consensus        17 ~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~-~~~~~~~~~gt~s~~-------S~L~v~~~~W~~g~~ftC~V~H   86 (101)
T d1ow0a1          17 LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAV-QGPPERDLCGCYSVS-------SVLPGCAEPWNHGKTFTCTAAY   86 (101)
T ss_dssp             HCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCE-ECCCCCCSTTCCCEE-------EECTTTHHHHHHTCEEEEEECC
T ss_pred             cCCCeEEEEEEeCCCCCcceEEEEEECCceeee-ecceEECCCCCEEEE-------EEEEEcHHHcCCCCeEEEEEEe
Confidence            47899999999875  3 247999865432211 111111223444332       1333322222236799999963

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.12  E-value=0.0067  Score=36.00  Aligned_cols=68  Identities=9%  Similarity=0.127  Sum_probs=37.6

Q ss_pred             cCCcEEEEEEEccCC--CCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCC
Q psy14080         20 LAVFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPY   95 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   95 (113)
                      .+.+++|.|.+.+..  +-.|.|.+.......... .....|+.|.+.       ..|.|..-+-.....|.|.+...
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~-~~~~~dgtys~~-------S~L~v~~~~W~~~~~ytC~V~H~   95 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTP-PVFDTDGSFFLY-------SRLKVDTDAWNNGESFTCSVMHE   95 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEE-EECCSSCCCEEE-------EEECCCSSCCHHHHCCEEEEEET
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcc-cEECCCCcEEEE-------EEEEECHHHhCCCCEEEEEEEeC
Confidence            367899999999863  458999664422221111 112335555543       14444333212256699999654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.02  Score=32.70  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=35.2

Q ss_pred             ecCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCCCe
Q psy14080         19 FLAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYTTT   98 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~   98 (113)
                      ..|+.+.|.|.-+..  ..|.|.|.....++              ..    ++  +|.|.==...|+|.|+|.- .....
T Consensus        19 ~~~~~V~L~C~t~eE--~~I~W~kd~~se~~--------------~~----Gn--tltV~VkE~~~aGnYTChk-~g~~L   75 (87)
T d3d85d1          19 APGEMVVLTCDTPEE--DGITWTLDQSSEVL--------------GS----GK--TLTIQVKEFGDAGQYTCHK-GGEVL   75 (87)
T ss_dssp             CCCEEEEEECSSSCC--SSCEEEETTCCCCC--------------EE----SS--EEEEEECSGGGCEEEEEEE-TTEEE
T ss_pred             CCccEEEEecCCCcc--cccEEeeCCccccc--------------cC----CC--EEEEEEEeccCCcceeEeC-CCcEe
Confidence            347899999955433  36999874322121              11    12  3333322346999999973 33344


Q ss_pred             eEEEEe
Q psy14080         99 SHSQNA  104 (113)
Q Consensus        99 s~~~~L  104 (113)
                      ++++-|
T Consensus        76 nht~lL   81 (87)
T d3d85d1          76 SHSLLL   81 (87)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence            555544

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.62  E-value=0.037  Score=31.52  Aligned_cols=54  Identities=15%  Similarity=0.257  Sum_probs=32.2

Q ss_pred             cCCcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecC
Q psy14080         20 LAVFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQP   94 (113)
Q Consensus        20 ~G~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (113)
                      +-.+|.|.|   +.....|.|++-  +..+..              .+.++.  +|-+-+.-..=.|+|.|....
T Consensus        21 ~dGsV~L~C---n~~~k~i~W~kd--g~~i~~--------------~~~~~k--tlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTC---GLTDKTIKWLKD--GSIISP--------------LNATKN--TWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEEC---SSSCSCEEEEET--TEECCC--------------SSCCSS--CCEEEETTSCCEEEEEEEESS
T ss_pred             cCCeEEEEe---CCCCcEEEEecC--Cceecc--------------cccccc--eeecCCcccCCCcceEcCCCc
Confidence            356899999   444468999983  222110              011112  344445666778999998654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.92  E-value=0.13  Score=28.90  Aligned_cols=61  Identities=10%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             CcEEEEEEEccCC--CCEEEEEecCCCeEEEecce-EEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080         22 VFSYSDKTVRDIV--KVRVSWVRRRDWHILTSGVL-TYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        22 ~~a~L~C~v~~~~--~~~V~W~k~~~~~~l~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      ..++|.|.+.+..  +-.|.|.+  ++........ ....++.|...          .+..+...|  .|.|.+...+
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~--~g~~~~~~~~~~~~~~gtys~~----------s~~~~~~~~--~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVS--SKKITEFDPAIVISPSGKYNAV----------KLGKYEDSN--SVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEEC--SSEEEECCCEEEECTTSSEEEE----------EEEEETTTT--TCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEE--CCEEccCcEEeeeccCCcEEEE----------EEEecCCCC--EEEEEEEECC
Confidence            4578999999873  34789975  3343332211 22345556543          222334555  5999996543

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.48  Score=25.95  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=27.1

Q ss_pred             CcEEEEEEEccCCCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEeecCCC
Q psy14080         22 VFSYSDKTVRDIVKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQAQPYT   96 (113)
Q Consensus        22 ~~a~L~C~v~~~~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   96 (113)
                      ..|.|.|.      ..|.|++.... ++..+                   +-+|-+-+.-..=.|+|.|.....+
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~-~~~~~-------------------~k~lnLG~~~~DPRG~Y~C~~~e~~   58 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVG-TLLSD-------------------ITRLDLGKRILDPRGIYRCNGTDIY   58 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCC-EEEGG-------------------GTEEEEEEGGGCCEEEEEEC-----
T ss_pred             CeEEEEcc------CeeEEecCCcc-cccCC-------------------ccEeecCCcccCCCcceEeCCcccc
Confidence            48999993      46999984322 22111                   1134444555667899999886433

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.70  E-value=0.0055  Score=36.60  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=36.3

Q ss_pred             ecCCcEEEEEEEccCCC----CEEEEEecCCCeEEEec--ceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEEEee
Q psy14080         19 FLAVFSYSDKTVRDIVK----VRVSWVRRRDWHILTSG--VLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYECQA   92 (113)
Q Consensus        19 ~~G~~a~L~C~v~~~~~----~~V~W~k~~~~~~l~~~--~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   92 (113)
                      ..+++++|.|.+.+...    -.+.|++... ......  ......++.|.+.       ..|.|..-+=.....|+|.+
T Consensus        27 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~-~~~~~~~~~~~~~~~gt~s~~-------S~L~v~~~~W~~g~~ytC~V   98 (116)
T d1igyb3          27 LITVTPKVTCVVVDISKDDPEVQFSWFVDNV-EVHTAQTQPREEQFNSTFRVV-------SALPIMHQDWLNGKEFKCRV   98 (116)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSC-CBCCCSCCCCCCCCSSSCCCC-------CCEECCHHHHHHTCCCBCCB
T ss_pred             ccCCCcEEEEEEecEeCCCCEEEEEECcCCe-EcCCcEEcccEECCCCCEEEE-------EEEEECHHHhCCCCEEEEEE
Confidence            45889999999997632    2456766432 111110  0111123444332       25555443333467899999


Q ss_pred             cC
Q psy14080         93 QP   94 (113)
Q Consensus        93 ~~   94 (113)
                      ..
T Consensus        99 ~H  100 (116)
T d1igyb3          99 NS  100 (116)
T ss_dssp             CC
T ss_pred             Ee
Confidence            53

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=3.4  Score=23.64  Aligned_cols=64  Identities=5%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             EEecCCcEEEEEEEccC-------CCCEEEEEecCCCeEEEecceEEcCCCCEEEEEeCCCCcEEEEEccCCCCCCEEEE
Q psy14080         17 TGFLAVFSYSDKTVRDI-------VKVRVSWVRRRDWHILTSGVLTYTNDARFQVIHTDGSDDWNLQIKFLQKRDNGTYE   89 (113)
Q Consensus        17 tv~~G~~a~L~C~v~~~-------~~~~V~W~k~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (113)
                      .+..|.+++..|.+...       .-..|.|--  +...+        ...+|++..   ....++.|.++...-+-.|-
T Consensus        14 vv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl--~~~~~--------P~~qy~~ln---~T~~Svtl~~l~~~~a~L~C   80 (100)
T d1i1ra1          14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT--NHFTI--------PKEQYTIIN---RTASSVTFTDIASLNIQLTC   80 (100)
T ss_dssp             EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEE--TTEEC--------CGGGCEEEE---TTEEEEEECSCCCSEEEEEE
T ss_pred             eEECCCCEEEEEEECchhcCccCCCcceEEEEE--CCEEC--------CchheEccC---CcEEEEEEccccCCcceeEE
Confidence            68899999999999732       235899933  23332        235677663   24668999999888777776


Q ss_pred             Eeec
Q psy14080         90 CQAQ   93 (113)
Q Consensus        90 C~~~   93 (113)
                      |...
T Consensus        81 ~~l~   84 (100)
T d1i1ra1          81 NILT   84 (100)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6664