Psyllid ID: psy140

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLSHRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGGVEGAEPSETKTRQPILEAGPISLLRP
cEEEcccccccEEEEEEEEEEEEEccccccccEEEEEEEcccEEEEEEEEccccccccccEEEEEEEEccccEEEccccEEEEEcccEEEEEEEEEEEcccccccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccc
cEEEccccccccEEEEEEEEEEEEcccEEccccEEEEEEccEEEEEEEEEcccccccccccEEEEEEEEEccEEEccccEEEEEcccccEEEEEEEEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccc
mvmvspalnpvaVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRfikhpeylragQRMVFregrtkavgnvtkvlppsghqgnyshlsRTKANKMLshraqpnktwalspvtekpevktprdldragqagakrggvegaepsetktrqpileagpisllrp
mvmvspalNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKhpeylragqrmVFREgrtkavgnvtkvlppsghqgnysHLSRTKANKMLSHRAqpnktwalspvtekpevktprdldragqagakrggvegaepsetktrqpileagpisllrp
MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLSHRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGGVEGAEPSETKTRQPILEAGPISLLRP
******ALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVT*****************************************************************************************
MVMVS**LNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVL******************************************************************************GPISLL**
MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLSHRAQPNKTWALSPVTEKPEVKTPRDLDR********************TRQPILEAGPISLLRP
MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPS************************************************************************LEAGPISLLRP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLSHRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGGVEGAEPSETKTRQPILEAGPISLLRP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query184 2.2.26 [Sep-21-2011]
O00178669 GTP-binding protein 1 OS= yes N/A 0.880 0.242 0.558 2e-43
Q5XGS8654 GTP-binding protein 1 OS= N/A N/A 0.532 0.149 0.816 3e-43
D2XV59669 GTP-binding protein 1 OS= yes N/A 0.532 0.146 0.816 3e-43
Q58DC5669 GTP-binding protein 1 OS= no N/A 0.532 0.146 0.816 3e-43
Q5R8Q7602 GTP-binding protein 1 (Fr yes N/A 0.820 0.250 0.603 4e-43
O08582668 GTP-binding protein 1 OS= yes N/A 0.532 0.146 0.816 4e-43
Q17045591 GTP-binding protein AGP-1 N/A N/A 0.554 0.172 0.644 2e-33
Q18905613 GTP-binding protein cgp-1 yes N/A 0.760 0.228 0.493 3e-33
Q9BX10602 GTP-binding protein 2 OS= no N/A 0.527 0.161 0.530 4e-24
Q3UJK4602 GTP-binding protein 2 OS= no N/A 0.527 0.161 0.530 4e-24
>sp|O00178|GTPB1_HUMAN GTP-binding protein 1 OS=Homo sapiens GN=GTPBP1 PE=1 SV=3 Back     alignment and function desciption
 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 109/172 (63%), Gaps = 10/172 (5%)

Query: 1   MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGD 60
           MVMVSP LNP A WEFE EILVLHHPTTIS RYQAMVHCGSIRQTA+ILSM  +CLRTGD
Sbjct: 477 MVMVSPRLNPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGD 536

Query: 61  KAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLS 120
           KA VHFRFIK PEYL   QR+VFREGRTKAVG +TK+L  +    N    S+ +  KM S
Sbjct: 537 KATVHFRFIKTPEYLHIDQRLVFREGRTKAVGTITKLLQTT---NNSPMNSKPQQIKMQS 593

Query: 121 HRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGGVEGAEPSETKTRQP 172
            +  P         +  P V  P   D A   GA        +P+ +   QP
Sbjct: 594 TKKGPLTKRDEGGPSGGPAVGAPPPGDEASSVGA-------GQPAASSNLQP 638
Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.
Homo sapiens (taxid: 9606)
>sp|Q5XGS8|GTPB1_XENLA GTP-binding protein 1 OS=Xenopus laevis GN=gtpbp1 PE=2 SV=1 Back     alignment and function description
>sp|D2XV59|GTPB1_RAT GTP-binding protein 1 OS=Rattus norvegicus GN=Gtpbp1 PE=1 SV=1 Back     alignment and function description
>sp|Q58DC5|GTPB1_BOVIN GTP-binding protein 1 OS=Bos taurus GN=GTPBP1 PE=2 SV=2 Back     alignment and function description
>sp|Q5R8Q7|GTPB1_PONAB GTP-binding protein 1 (Fragment) OS=Pongo abelii GN=GTPBP1 PE=2 SV=2 Back     alignment and function description
>sp|O08582|GTPB1_MOUSE GTP-binding protein 1 OS=Mus musculus GN=Gtpbp1 PE=1 SV=2 Back     alignment and function description
>sp|Q17045|AGP1_ASCSU GTP-binding protein AGP-1 OS=Ascaris suum GN=AGP-1 PE=2 SV=1 Back     alignment and function description
>sp|Q18905|CGP1_CAEEL GTP-binding protein cgp-1 OS=Caenorhabditis elegans GN=cgp-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9BX10|GTPB2_HUMAN GTP-binding protein 2 OS=Homo sapiens GN=GTPBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q3UJK4|GTPB2_MOUSE GTP-binding protein 2 OS=Mus musculus GN=Gtpbp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
156544221 411 PREDICTED: GTP-binding protein 1 [Nasoni 0.673 0.301 0.771 3e-50
332028974 630 GTP-binding protein 1 [Acromyrmex echina 0.951 0.277 0.578 2e-48
307171608 637 GTP-binding protein 1 [Camponotus florid 0.940 0.271 0.586 3e-48
322802294 631 hypothetical protein SINV_08756 [Solenop 0.635 0.185 0.734 1e-47
307211430 629 GTP-binding protein 1 [Harpegnathos salt 0.956 0.279 0.572 2e-47
193599138 602 PREDICTED: GTP-binding protein 1-like [A 0.570 0.174 0.847 6e-47
242006207 620 GTP-binding protein, putative [Pediculus 0.646 0.191 0.756 1e-46
383849485 634 PREDICTED: GTP-binding protein 1-like [M 0.630 0.182 0.720 9e-46
91090097 645 PREDICTED: similar to GTP binding protei 0.614 0.175 0.745 4e-45
318087062167 putative GTP-binding protein 1 [Latrodec 0.679 0.748 0.710 4e-45
>gi|156544221|ref|XP_001606734.1| PREDICTED: GTP-binding protein 1 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 108/127 (85%), Gaps = 3/127 (2%)

Query: 1   MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGD 60
           MVMVSPALNP A WEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS +CLRTGD
Sbjct: 224 MVMVSPALNPQACWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSEDCLRTGD 283

Query: 61  KAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSR-TKANKML 119
           KA VHFRFIKHPEY++ GQRMVFREGRTKAVGNV +++P SG     +H SR +K NK+ 
Sbjct: 284 KALVHFRFIKHPEYIKPGQRMVFREGRTKAVGNVLRLIPHSGP--GSTHTSRASKPNKVQ 341

Query: 120 SHRAQPN 126
            +R  PN
Sbjct: 342 QNRQNPN 348

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332028974|gb|EGI68989.1| GTP-binding protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307171608|gb|EFN63393.1| GTP-binding protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322802294|gb|EFZ22690.1| hypothetical protein SINV_08756 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307211430|gb|EFN87557.1| GTP-binding protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|193599138|ref|XP_001951677.1| PREDICTED: GTP-binding protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242006207|ref|XP_002423945.1| GTP-binding protein, putative [Pediculus humanus corporis] gi|212507215|gb|EEB11207.1| GTP-binding protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383849485|ref|XP_003700375.1| PREDICTED: GTP-binding protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|91090097|ref|XP_970616.1| PREDICTED: similar to GTP binding protein [Tribolium castaneum] gi|270013733|gb|EFA10181.1| hypothetical protein TcasGA2_TC012373 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|318087062|gb|ADV40122.1| putative GTP-binding protein 1 [Latrodectus hesperus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
UNIPROTKB|B0QY59 349 GTPBP1 "GTP-binding protein 1" 0.815 0.429 0.612 6.7e-43
ZFIN|ZDB-GENE-041007-2652 gtpbp1l "GTP binding protein 1 0.793 0.223 0.598 2.9e-41
ZFIN|ZDB-GENE-030909-12657 gtpbp1 "GTP binding protein 1" 0.836 0.234 0.579 1.5e-40
UNIPROTKB|Q5R8Q7602 GTPBP1 "GTP-binding protein 1" 0.815 0.249 0.612 3.3e-40
UNIPROTKB|E2RL43669 GTPBP1 "Uncharacterized protei 0.815 0.224 0.612 6.7e-40
UNIPROTKB|O00178669 GTPBP1 "GTP-binding protein 1" 0.815 0.224 0.612 6.7e-40
MGI|MGI:109443668 Gtpbp1 "GTP binding protein 1" 0.869 0.239 0.578 1.1e-39
RGD|1306758669 Gtpbp1 "GTP binding protein 1" 0.869 0.239 0.572 1.1e-39
UNIPROTKB|G3MX26603 GTPBP1 "GTP-binding protein 1" 0.548 0.167 0.790 1.8e-39
UNIPROTKB|F1SNX7669 GTPBP1 "Uncharacterized protei 0.820 0.225 0.603 1.9e-39
UNIPROTKB|B0QY59 GTPBP1 "GTP-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 429 (156.1 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 95/155 (61%), Positives = 105/155 (67%)

Query:     1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGD 60
             MVMVSP LNP A WEFE EILVLHHPTTIS RYQAMVHCGSIRQTA+ILSM  +CLRTGD
Sbjct:    55 MVMVSPRLNPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGD 114

Query:    61 KAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKANKMLS 120
             KA VHFRFIK PEYL   QR+VFREGRTKAVG +TK+L  +    N    S+ +  KM S
Sbjct:   115 KATVHFRFIKTPEYLHIDQRLVFREGRTKAVGTITKLLQTTN---NSPMNSKPQQIKMQS 171

Query:   121 HRAQP-NKTWALSPVTEKPEVKTPRDLDRAGQAGA 154
              +  P  K     P +  P V  P   D A   GA
Sbjct:   172 TKKGPLTKRDEGGP-SGGPAVGAPPPGDEASSVGA 205
GO:0005525 "GTP binding" evidence=IEA
ZFIN|ZDB-GENE-041007-2 gtpbp1l "GTP binding protein 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030909-12 gtpbp1 "GTP binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R8Q7 GTPBP1 "GTP-binding protein 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|E2RL43 GTPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O00178 GTPBP1 "GTP-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109443 Gtpbp1 "GTP binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306758 Gtpbp1 "GTP binding protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX26 GTPBP1 "GTP-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNX7 GTPBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O08582GTPB1_MOUSENo assigned EC number0.81630.53260.1467yesN/A
O00178GTPB1_HUMANNo assigned EC number0.55810.88040.2421yesN/A
D2XV59GTPB1_RATNo assigned EC number0.81630.53260.1464yesN/A
Q5R8Q7GTPB1_PONABNo assigned EC number0.60380.82060.2508yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
cd0370887 cd03708, GTPBP_III, Domain III of the GP-1 family 9e-53
COG5258527 COG5258, GTPBP1, GTPase [General function predicti 6e-28
pfam0314391 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-ter 4e-25
cd01513102 cd01513, Translation_factor_III, Domain III of Elo 2e-07
cd03704108 cd03704, eRF3c_III, This family represents eEF1alp 3e-04
TIGR00483426 TIGR00483, EF-1_alpha, translation elongation fact 0.001
PRK12317425 PRK12317, PRK12317, elongation factor 1-alpha; Rev 0.003
COG5256428 COG5256, TEF1, Translation elongation factor EF-1a 0.003
>gnl|CDD|239679 cd03708, GTPBP_III, Domain III of the GP-1 family of GTPase Back     alignment and domain information 
 Score =  162 bits (413), Expect = 9e-53
 Identities = 63/87 (72%), Positives = 70/87 (80%)

Query: 11 VAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIK 70
           A WEFE EILVLHHPTTIS  YQA VH GSIRQTA I+S+  + LRTGD+A V FRF+ 
Sbjct: 1  KACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDKDVLRTGDRALVRFRFLY 60

Query: 71 HPEYLRAGQRMVFREGRTKAVGNVTKV 97
          HPEYLR GQR++FREGRTK VG VTKV
Sbjct: 61 HPEYLREGQRLIFREGRTKGVGEVTKV 87

This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Length = 87
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] Back     alignment and domain information
>gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain Back     alignment and domain information
>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G Back     alignment and domain information
>gnl|CDD|239675 cd03704, eRF3c_III, This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu Back     alignment and domain information
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha Back     alignment and domain information
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed Back     alignment and domain information
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 184
KOG0463|consensus641 99.97
PF0314399 GTP_EFTU_D3: Elongation factor Tu C-terminal domai 99.91
cd0370887 GTPBP_III Domain III of the GP-1 family of GTPase. 99.88
cd0370693 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF 99.87
cd03704108 eRF3c_III This family represents eEF1alpha-like C- 99.86
cd0370790 EFTU_III Domain III of elongation factor (EF) Tu. 99.84
cd01513102 Translation_factor_III Domain III of Elongation fa 99.81
PRK12317425 elongation factor 1-alpha; Reviewed 99.81
cd0409497 selB_III This family represents the domain of elon 99.8
PLN03127447 Elongation factor Tu; Provisional 99.8
TIGR00483426 EF-1_alpha translation elongation factor EF-1 alph 99.8
PRK12735396 elongation factor Tu; Reviewed 99.8
cd04093107 HBS1_C HBS1_C: this family represents the C-termin 99.8
PRK00049396 elongation factor Tu; Reviewed 99.8
KOG0459|consensus501 99.8
PLN00043447 elongation factor 1-alpha; Provisional 99.79
PRK12736394 elongation factor Tu; Reviewed 99.79
COG5258527 GTPBP1 GTPase [General function prediction only] 99.79
cd03705104 EF1_alpha_III Domain III of EF-1. Eukaryotic elong 99.79
TIGR00485394 EF-Tu translation elongation factor TU. This align 99.79
KOG0460|consensus449 99.77
CHL00071409 tufA elongation factor Tu 99.77
PLN03126478 Elongation factor Tu; Provisional 99.77
PTZ00141446 elongation factor 1- alpha; Provisional 99.75
COG5256428 TEF1 Translation elongation factor EF-1alpha (GTPa 99.72
KOG1143|consensus591 99.68
PRK05124474 cysN sulfate adenylyltransferase subunit 1; Provis 99.67
COG0050394 TufB GTPases - translation elongation factors [Tra 99.66
PRK05506 632 bifunctional sulfate adenylyltransferase subunit 1 99.62
cd04095103 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily repres 99.61
TIGR02034406 CysN sulfate adenylyltransferase, large subunit. H 99.61
PRK04000411 translation initiation factor IF-2 subunit gamma; 99.44
PTZ00327460 eukaryotic translation initiation factor 2 gamma s 99.43
TIGR03680406 eif2g_arch translation initiation factor 2 subunit 99.31
PRK10512 614 selenocysteinyl-tRNA-specific translation factor; 99.16
KOG0458|consensus603 99.14
KOG0052|consensus391 99.09
TIGR00475 581 selB selenocysteine-specific elongation factor Sel 98.78
COG2895431 CysN GTPases - Sulfate adenylate transferase subun 97.99
PF0917388 eIF2_C: Initiation factor eIF2 gamma, C terminal; 97.15
COG3276447 SelB Selenocysteine-specific translation elongatio 96.74
COG5257415 GCD11 Translation initiation factor 2, gamma subun 96.23
>KOG0463|consensus Back     alignment and domain information 
Probab=99.97  E-value=3.2e-31  Score=240.37  Aligned_cols=154  Identities=57%  Similarity=0.879  Sum_probs=147.7

Q ss_pred             CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCe
Q psy140            1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQR   80 (184)
Q Consensus         1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~R   80 (184)
                      ||+++|+..+.++|+|+|+|++|+||+.|++.|+.++||++++++++|..++.+||+.||.+.|+|+|.++|+|++.|+|
T Consensus       450 MVmVsp~lkPqAsweFEaEILVLHHPTTIsprYQAMvHcGSiRQTAtivsM~kdcLRTGDka~V~FrFIkqPEYir~gqr  529 (641)
T KOG0463|consen  450 MVMVSPKLKPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATIVSMGKDCLRTGDKAKVQFRFIKQPEYIRPGQR  529 (641)
T ss_pred             eEEecCCCCcceeeEEeeeEEEEecCCccCcchhheeeeccccceeeeeecChhhhhcCCcceEEEEEecCcceecCCce
Confidence            89999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCceEEEEEEEeccCCCCCCCCccccccccch--hhcccCCCCCccccCCCCCCCCCccCCCCCCcccccccccCC
Q psy140           81 MVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKAN--KMLSHRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGG  158 (184)
Q Consensus        81 FvLRdgrTIAvGvIt~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (184)
                      ++||+|+|.|+|.|+++++.+..++     +|+|+.  +|+++++.++..|+.++++++|+|++|+++|+++++|+..-.
T Consensus       530 lVFREGRTKAVGti~~~lp~~~~sp-----~r~Kp~~~~~~s~~kgs~g~r~~gg~s~g~~~~a~~~gde~~s~~~gq~~  604 (641)
T KOG0463|consen  530 LVFREGRTKAVGTISSVLPQESLSP-----QRAKPKDGRQKSYGKGSMGPRDKGGPSGGPAVGAPPPGDEASSVGAGQAS  604 (641)
T ss_pred             EEeecccceeeeeecccccccccCc-----cCCCchhhhhhhcCCCCCCcccCCCCCCCCccCCCCCCcccccccccccC
Confidence            9999999999999999999999999     999998  677888999999999999999999999999999999886544


Q ss_pred             C
Q psy140          159 V  159 (184)
Q Consensus       159 ~  159 (184)
                      +
T Consensus       605 ~  605 (641)
T KOG0463|consen  605 P  605 (641)
T ss_pred             C
Confidence            4

>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase Back     alignment and domain information
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU) Back     alignment and domain information
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu Back     alignment and domain information
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu Back     alignment and domain information
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G Back     alignment and domain information
>PRK12317 elongation factor 1-alpha; Reviewed Back     alignment and domain information
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu Back     alignment and domain information
>PLN03127 Elongation factor Tu; Provisional Back     alignment and domain information
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha Back     alignment and domain information
>PRK12735 elongation factor Tu; Reviewed Back     alignment and domain information
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha Back     alignment and domain information
>PRK00049 elongation factor Tu; Reviewed Back     alignment and domain information
>KOG0459|consensus Back     alignment and domain information
>PLN00043 elongation factor 1-alpha; Provisional Back     alignment and domain information
>PRK12736 elongation factor Tu; Reviewed Back     alignment and domain information
>COG5258 GTPBP1 GTPase [General function prediction only] Back     alignment and domain information
>cd03705 EF1_alpha_III Domain III of EF-1 Back     alignment and domain information
>TIGR00485 EF-Tu translation elongation factor TU Back     alignment and domain information
>KOG0460|consensus Back     alignment and domain information
>CHL00071 tufA elongation factor Tu Back     alignment and domain information
>PLN03126 Elongation factor Tu; Provisional Back     alignment and domain information
>PTZ00141 elongation factor 1- alpha; Provisional Back     alignment and domain information
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1143|consensus Back     alignment and domain information
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional Back     alignment and domain information
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional Back     alignment and domain information
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu Back     alignment and domain information
>TIGR02034 CysN sulfate adenylyltransferase, large subunit Back     alignment and domain information
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional Back     alignment and domain information
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>KOG0458|consensus Back     alignment and domain information
>KOG0052|consensus Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology Back     alignment and domain information
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
3agj_A437 Crystal Structure Of Archaeal Pelota And Gtp-bound 8e-04
3vmf_A440 Archaeal Protein Length = 440 8e-04
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 Back     alignment and structure 
Iteration: 1

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 10  PVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSA--------------EC 55
           P    EFE  I V+ HP+ I+  Y  ++H  +   ++ I+ + A              + 
Sbjct: 320 PTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQF 379
Query: 56  LRTGDKAAVHFRFI------KHPEYLRAGQRMVFREGRTKAVGNVTKVLP 99
           L+ GD A V F+ +      K  E  + G+  +    RT  +G VT V P
Sbjct: 380 LKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKP 429
>pdb|3VMF|A Chain A, Archaeal Protein Length = 440 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 7e-09
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 9e-08
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 1e-07
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 2e-07
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 2e-07
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 3e-06
1f60_A458 Elongation factor EEF1A; protein-protein complex, 3e-04
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 Back     alignment and structure
 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 21/117 (17%)

Query: 2   VMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDK 61
           V+ S      A   F  +I +L  P+ +++ Y  ++H  +  +  S   +  +  +T  K
Sbjct: 351 VLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRK 410

Query: 62  AAVHFRFIK------------HP-------EYLRAGQRMVFR-EGRTKAVGNVTKVL 98
           +     F               P       +Y +   R   R +G T AVG V K+L
Sbjct: 411 SKKPPMFATKGMKIIAELETQTPVCMERFEDY-QYMGRFTLRDQGTTVAVGKVVKIL 466
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 Back     alignment and structure
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Length = 204 Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 99.84
1f60_A458 Elongation factor EEF1A; protein-protein complex, 99.79
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 99.77
3j2k_7439 ERF3, eukaryotic polypeptide chain release factor 99.77
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 99.76
2c78_A405 Elongation factor TU-A; hydrolase, GTPase, transla 99.75
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 99.73
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 99.73
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 99.73
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 99.71
1zun_B434 Sulfate adenylate transferase, subunit 1/adenylyls 99.69
2elf_A370 Protein translation elongation factor 1A; tRNA, py 99.61
1wb1_A482 Translation elongation factor SELB; selenocysteine 99.57
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 99.56
1kk1_A410 EIF2gamma; initiation of translation; HET: GNP; 1. 99.52
1s0u_A408 EIF-2-gamma, translation initiation factor 2 gamma 99.52
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 99.43
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Back     alignment and structure
Probab=99.84  E-value=1.4e-20  Score=154.85  Aligned_cols=99  Identities=20%  Similarity=0.398  Sum_probs=92.1

Q ss_pred             CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140            1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF   66 (184)
Q Consensus         1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~   66 (184)
                      ||||++++++..+++|+|+|++|+++.+|.+||++++|+||.+++|+|..|    |          +++|++||.+.|+|
T Consensus        83 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l  162 (204)
T 3e1y_E           83 FILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL  162 (204)
T ss_dssp             CEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEE
T ss_pred             eEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEE
Confidence            689999988899999999999999998999999999999999999999976    2          47999999999999


Q ss_pred             EeccceEEeeeCC------eEEEEC-CceEEEEEEEeccCC
Q psy140           67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPP  100 (184)
Q Consensus        67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~  100 (184)
                      ++. +|+|++.++      ||+||| ++|||+|+|+++.+.
T Consensus       163 ~~~-~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~  202 (204)
T 3e1y_E          163 RTA-GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE  202 (204)
T ss_dssp             EES-SCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred             EEC-CeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence            999 999999984      999999 899999999999875
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Back     alignment and structure
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Back     alignment and structure
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Back     alignment and structure
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 184
d1r5ba268 b.44.1.1 (A:555-622) Eukaryotic peptide chain rele 2e-20
d1jnya2107 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, 6e-19
d1d2ea2103 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) 3e-18
d2c78a293 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) 7e-16
d1f60a2107 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, 3e-06
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 68 Back     information, alignment and structure

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Eukaryotic peptide chain release factor ERF2, C-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 78.3 bits (193), Expect = 2e-20
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIK 70
          A   F  +I +L  P+ +++ Y  ++H  +  +  S   +  +  +T  K+     F  
Sbjct: 2  ATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFAT 60
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 107 Back     information, alignment and structure
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 103 Back     information, alignment and structure
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
d1d2ea2103 Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mi 99.93
d2c78a293 Elongation factor Tu (EF-Tu) {Thermus thermophilus 99.91
d1f60a2107 Elongation factor eEF-1alpha, C-terminal domain {B 99.9
d1jnya2107 Elongation factor eEF-1alpha, C-terminal domain {A 99.89
d1r5ba268 Eukaryotic peptide chain release factor ERF2, C-te 99.46
d1zunb2105 Sulfate adenylate transferase subunit cysN/C, EF-T 99.43
d1kk1a289 Initiation factor eIF2 gamma subunit {Archaeon Pyr 97.55
d1s0ua290 Initiation factor eIF2 gamma subunit {Archaeon Met 97.31
d1wb1a3116 Elongation factor SelB, domain 3 {Methanococcus ma 97.27
d2qn6a295 Initiation factor eIF2 gamma subunit {Sulfolobus s 97.17
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor Tu (EF-Tu)
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.93  E-value=5.4e-26  Score=169.86  Aligned_cols=90  Identities=19%  Similarity=0.284  Sum_probs=84.0

Q ss_pred             eeEEEEEEEEccCC-----cccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEEeeeCCeEEEEC-
Q psy140           13 VWEFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFRE-   85 (184)
Q Consensus        13 t~~F~AqI~VL~h~-----~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~le~g~RFvLRd-   85 (184)
                      +++|+|+||+|+|+     ++|.+||+|+|||+|++++|+|... +.++++|||.+.|+|+|. +|+++++|+||+||| 
T Consensus         1 h~~F~A~vyvL~~~EGGR~tp~~~gY~pq~~~~t~d~t~~i~~~~~~~~v~PGd~~~v~~~l~-~P~~le~g~rF~iREg   79 (103)
T d1d2ea2           1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILR-QPMILEKGQRFTLRDG   79 (103)
T ss_dssp             EEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEE-EEECCCTTCEEEEEET
T ss_pred             CcEEEEEEEEEECCcCCceeEEeecceeeEEEecccccEEEEecCCccccccCCceEEEEEEC-CceeecCCCEEEEEEC
Confidence            47899999999986     8999999999999999999999886 689999999999999999 999999999999999 


Q ss_pred             CceEEEEEEEeccCCCCC
Q psy140           86 GRTKAVGNVTKVLPPSGH  103 (184)
Q Consensus        86 grTIAvGvIt~V~~~~~~  103 (184)
                      |+|||+|+|++|++...+
T Consensus        80 grTVg~GvVteil~~~~~   97 (103)
T d1d2ea2          80 NRTIGTGLVTDTPAMTEE   97 (103)
T ss_dssp             TEEEEEEEEEECCCCCHH
T ss_pred             CEEEEEEEEEEccCccch
Confidence            699999999999976533
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure