Psyllid ID: psy14115

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccEEEccccEEEEcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccEEEEcccccccccccEEEccccc
ccHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHcccccEEEEcHHHHHHHHcEEccccccEEcccHHHcccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHcccEEccccccccccHHHHHHEEcccEEEEEccEEEEEccccHHHHHHHccHHHHHcccccEEEEccHHHHHHHcEEEEEccccEEEEcccc
prvaiakdRTVRWLDRCLaahrnpttqnifpivqGGLDEALRKDCAHQMVEkdvngfavgglsggeakeDFWYSVLVSInclpkdkpryvmgIGFAVDLLICCALgadmfdcvfptrtarFGSALVRQGQLqlkrdeyatdftpidnqcpcstcarYTRAYLHHIatvepsachllSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMkdaypdenyprwTIDALRAVNIeltesepcrsglrrslkclqiSTYLVRSETACAVGYVIGVDVLKkagglhkfmgwkralltdsggfQMVSLLKFAEIteegvkfqspnn
prvaiakdrtvrWLDRCLaahrnpttqnifpIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYAtdftpidnqcpcSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIREsikeqrfpqYVKQYMkdaypdenypRWTIDALRAVNIELtesepcrsglrrsLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEiteegvkfqspnn
PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN
****IAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITE**********
PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSP**
PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEE*********
PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q9VPY8427 Probable queuine tRNA-rib yes N/A 0.727 0.543 0.594 2e-80
Q4QQY7396 Queuine tRNA-ribosyltrans N/A N/A 0.727 0.585 0.562 4e-79
Q28HC6396 Queuine tRNA-ribosyltrans yes N/A 0.727 0.585 0.557 6e-79
Q7SYK1400 Queuine tRNA-ribosyltrans yes N/A 0.730 0.582 0.576 4e-78
Q4QR99403 Queuine tRNA-ribosyltrans yes N/A 0.730 0.578 0.561 8e-78
Q9JMA2403 Queuine tRNA-ribosyltrans yes N/A 0.730 0.578 0.553 2e-77
Q9BXR0403 Queuine tRNA-ribosyltrans yes N/A 0.727 0.575 0.551 1e-74
O94460404 Probable queuine tRNA-rib yes N/A 0.724 0.571 0.475 7e-65
Q23623400 Probable queuine tRNA-rib yes N/A 0.717 0.572 0.493 3e-63
A8X0P0400 Probable queuine tRNA-rib N/A N/A 0.695 0.555 0.5 5e-63
>sp|Q9VPY8|TGT_DROME Probable queuine tRNA-ribosyltransferase OS=Drosophila melanogaster GN=Tgt PE=2 SV=1 Back     alignment and function desciption
 Score =  299 bits (766), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/232 (59%), Positives = 169/232 (72%)

Query: 1   PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG 60
           PRV  A +RT+RW+DRC+ AH     Q++FPIVQGGLD  LR+ C   ++E+ V GFAVG
Sbjct: 163 PRVEEAMERTIRWVDRCIEAHARDDDQSLFPIVQGGLDVPLRQRCVSALMERQVRGFAVG 222

Query: 61  GLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120
           GLSGGE+K DFW  V V    LPKDKPRY+MG+GFA DL++C ALG DMFDCVFPTRTAR
Sbjct: 223 GLSGGESKHDFWRMVDVCTGYLPKDKPRYLMGVGFAADLVVCVALGIDMFDCVFPTRTAR 282

Query: 121 FGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHN 180
           FG ALV  GQL LK+ +Y  D  PID  C CSTC RYTR+YLHHIAT E  +  LLS+HN
Sbjct: 283 FGCALVDSGQLNLKQPKYKLDMEPIDKDCDCSTCRRYTRSYLHHIATNESVSSSLLSIHN 342

Query: 181 IAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIEL 232
           +A+Q+RLMR +RE+I+   FPQ+V  +M   +  E  P W  +AL AVNI+L
Sbjct: 343 VAYQLRLMRSMREAIQRDEFPQFVADFMARHFKAEPVPAWIREALSAVNIQL 394
Interacts with a second catalytic subunit to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 9
>sp|Q4QQY7|TGT_XENLA Queuine tRNA-ribosyltransferase OS=Xenopus laevis GN=qtrt1 PE=2 SV=1 Back     alignment and function description
>sp|Q28HC6|TGT_XENTR Queuine tRNA-ribosyltransferase OS=Xenopus tropicalis GN=qtrt1 PE=2 SV=2 Back     alignment and function description
>sp|Q7SYK1|TGT_DANRE Queuine tRNA-ribosyltransferase OS=Danio rerio GN=qtrt1 PE=2 SV=1 Back     alignment and function description
>sp|Q4QR99|TGT_RAT Queuine tRNA-ribosyltransferase OS=Rattus norvegicus GN=Qtrt1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JMA2|TGT_MOUSE Queuine tRNA-ribosyltransferase OS=Mus musculus GN=Qtrt1 PE=1 SV=2 Back     alignment and function description
>sp|Q9BXR0|TGT_HUMAN Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3 Back     alignment and function description
>sp|O94460|TGT_SCHPO Probable queuine tRNA-ribosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.19c PE=3 SV=1 Back     alignment and function description
>sp|Q23623|TGT_CAEEL Probable queuine tRNA-ribosyltransferase OS=Caenorhabditis elegans GN=tgt-1 PE=3 SV=1 Back     alignment and function description
>sp|A8X0P0|TGT_CAEBR Probable queuine tRNA-ribosyltransferase OS=Caenorhabditis briggsae GN=tgt-1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
322779457407 hypothetical protein SINV_04875 [Solenop 0.727 0.570 0.650 9e-94
350397979395 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.587 0.659 2e-93
340720797395 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.587 0.663 2e-93
66556485394 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.588 0.659 6e-93
380029006394 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.588 0.637 4e-92
346471021396 hypothetical protein [Amblyomma maculatu 0.727 0.585 0.659 1e-91
345479506 434 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.534 0.650 2e-91
307211141394 Probable queuine tRNA-ribosyltransferase 0.727 0.588 0.642 3e-91
383865829395 PREDICTED: probable queuine tRNA-ribosyl 0.727 0.587 0.650 3e-91
307175772386 Probable queuine tRNA-ribosyltransferase 0.727 0.601 0.637 5e-90
>gi|322779457|gb|EFZ09649.1| hypothetical protein SINV_04875 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 189/232 (81%)

Query: 1   PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG 60
           PR+  A  RT+RWLDRCL+AH  P  Q+IFPIVQGGLD  LR +CAHQ+++++VNG+AVG
Sbjct: 175 PRIEEAMHRTIRWLDRCLSAHEKPDEQSIFPIVQGGLDPTLRSECAHQLIKREVNGYAVG 234

Query: 61  GLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120
           GLSGGE+K+DFW  V +S N LPK+KPRY+MG+GFAVDL++C ALG DM+DCVFPTRTAR
Sbjct: 235 GLSGGESKDDFWKMVHISTNILPKNKPRYLMGVGFAVDLIVCSALGIDMYDCVFPTRTAR 294

Query: 121 FGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHN 180
           FG ALV+ GQL L++ +Y  D  PID  C CSTC  YTRAYLH IATVE  +CHLL+VHN
Sbjct: 295 FGCALVKTGQLSLRQAQYKKDLKPIDESCECSTCKTYTRAYLHQIATVETVSCHLLTVHN 354

Query: 181 IAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIEL 232
           +AFQMRLMR+IR+SIK QRFP++++ YM   YP+++YP W I+AL AVN+ L
Sbjct: 355 VAFQMRLMRDIRDSIKAQRFPRFIQDYMLTVYPNKDYPTWIINALEAVNVTL 406

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350397979|ref|XP_003485050.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720797|ref|XP_003398816.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|66556485|ref|XP_395187.2| PREDICTED: probable queuine tRNA-ribosyltransferase [Apis mellifera] Back     alignment and taxonomy information
>gi|380029006|ref|XP_003698174.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Apis florea] Back     alignment and taxonomy information
>gi|346471021|gb|AEO35355.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|345479506|ref|XP_001607235.2| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307211141|gb|EFN87359.1| Probable queuine tRNA-ribosyltransferase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383865829|ref|XP_003708375.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307175772|gb|EFN65607.1| Probable queuine tRNA-ribosyltransferase [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
ZFIN|ZDB-GENE-040426-1625400 qtrt1 "queuine tRNA-ribosyltra 0.730 0.582 0.576 8.1e-76
FB|FBgn0031321427 Tgt "tRNA-guanine transglycosy 0.746 0.557 0.585 1.5e-74
RGD|620996403 Qtrt1 "queuine tRNA-ribosyltra 0.730 0.578 0.561 1.4e-71
MGI|MGI:1931441403 Qtrt1 "queuine tRNA-ribosyltra 0.730 0.578 0.553 4.8e-71
UNIPROTKB|F1S586403 QTRT1 "Queuine tRNA-ribosyltra 0.730 0.578 0.561 1.3e-70
UNIPROTKB|F1MCU6406 QTRT1 "Queuine tRNA-ribosyltra 0.727 0.571 0.559 2.1e-70
UNIPROTKB|E2RNA1403 QTRT1 "Queuine tRNA-ribosyltra 0.727 0.575 0.555 1.4e-69
DICTYBASE|DDB_G0291802447 qtrt1 "queuine tRNA-ribosyltra 0.721 0.514 0.552 1.8e-69
UNIPROTKB|Q9BXR0403 QTRT1 "Queuine tRNA-ribosyltra 0.727 0.575 0.551 1e-68
POMBASE|SPAC1687.19c404 SPAC1687.19c "queuine tRNA-rib 0.724 0.571 0.475 2.4e-60
ZFIN|ZDB-GENE-040426-1625 qtrt1 "queuine tRNA-ribosyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 135/234 (57%), Positives = 182/234 (77%)

Query:     1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG 60
             PRV  A  R+VRWLDRC+AA++NP  QN+F I+QGGLD  LRK C  +M ++DV GFA+G
Sbjct:   167 PRVEEAMHRSVRWLDRCIAANKNPDRQNLFAIIQGGLDAELRKACLKEMTKRDVPGFAIG 226

Query:    61 GLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120
             GL GGE K+DFW  V +S + LP++KPRY+MG+G+AVDL++C ALG DMFDCVFPTRTAR
Sbjct:   227 GLGGGEEKDDFWKMVTLSTDHLPREKPRYLMGVGYAVDLVVCVALGCDMFDCVFPTRTAR 286

Query:   121 FGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHN 180
             FGSALV  G LQLK+ +YA DF PID  C C TC R++RAYLH +   + +A H +++HN
Sbjct:   287 FGSALVPWGSLQLKQKQYAKDFQPIDPDCQCPTCRRHSRAYLHALFKSDTAAMHHITIHN 346

Query:   181 IAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDEN-YPRWTIDALRAVNIELT 233
             I++Q+ LMR +R+SI +QRFP++VK++MK  +P  + YP W ++AL++VNI L+
Sbjct:   347 ISYQLSLMRSVRQSIIDQRFPEFVKEFMKRMFPSSSQYPSWAVEALQSVNICLS 400
GO:0008033 "tRNA processing" evidence=IEA
GO:0008616 "queuosine biosynthetic process" evidence=IEA
GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA
GO:0006400 "tRNA modification" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0046872 "metal ion binding" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA
FB|FBgn0031321 Tgt "tRNA-guanine transglycosylase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|620996 Qtrt1 "queuine tRNA-ribosyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1931441 Qtrt1 "queuine tRNA-ribosyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S586 QTRT1 "Queuine tRNA-ribosyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCU6 QTRT1 "Queuine tRNA-ribosyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNA1 QTRT1 "Queuine tRNA-ribosyltransferase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291802 qtrt1 "queuine tRNA-ribosyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXR0 QTRT1 "Queuine tRNA-ribosyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPAC1687.19c SPAC1687.19c "queuine tRNA-ribosyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JMA2TGT_MOUSE2, ., 4, ., 2, ., 2, 90.55310.73040.5781yesN/A
Q28HC6TGT_XENTR2, ., 4, ., 2, ., 2, 90.55790.72720.5858yesN/A
Q9BXR0TGT_HUMAN2, ., 4, ., 2, ., 2, 90.55120.72720.5756yesN/A
Q4QR99TGT_RAT2, ., 4, ., 2, ., 2, 90.56170.73040.5781yesN/A
Q7SYK1TGT_DANRE2, ., 4, ., 2, ., 2, 90.57690.73040.5825yesN/A
Q9VPY8TGT_DROME2, ., 4, ., 2, ., 2, 90.59480.72720.5433yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.691
4th Layer2.4.2.290.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
pfam01702237 pfam01702, TGT, Queuine tRNA-ribosyltransferase 9e-89
PRK00112366 PRK00112, tgt, queuine tRNA-ribosyltransferase; Pr 2e-83
COG0343372 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltran 1e-79
TIGR00430368 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosyla 2e-66
TIGR00449367 TIGR00449, tgt_general, tRNA-guanine family transg 1e-65
PRK01008372 PRK01008, PRK01008, queuine tRNA-ribosyltransferas 7e-43
PRK00112 366 PRK00112, tgt, queuine tRNA-ribosyltransferase; Pr 1e-20
TIGR00430 368 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosyla 1e-17
TIGR00449 367 TIGR00449, tgt_general, tRNA-guanine family transg 3e-15
COG0343 372 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltran 1e-14
PRK13534 639 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ri 5e-10
TIGR00432 540 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglyco 2e-08
PRK01008 372 PRK01008, PRK01008, queuine tRNA-ribosyltransferas 2e-07
PRK13533487 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ri 3e-07
PRK13533 487 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ri 9e-04
>gnl|CDD|216654 pfam01702, TGT, Queuine tRNA-ribosyltransferase Back     alignment and domain information 
 Score =  264 bits (678), Expect = 9e-89
 Identities = 101/209 (48%), Positives = 136/209 (65%), Gaps = 2/209 (0%)

Query: 2   RVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG 61
           R   + +RT+RW DRCL AH+    Q +F IVQGGL E LR++ A ++ E   +G+A+GG
Sbjct: 30  RAEKSVERTLRWADRCLEAHKRKG-QALFGIVQGGLYEDLREESAEELAEDGFDGYAIGG 88

Query: 62  LSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121
           LS GE KE+    V      LP+DKPRY+MG+G   D+L   ALG DMFDCV PTR AR 
Sbjct: 89  LSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVSPTRYARN 148

Query: 122 GSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHN 180
           G AL   G + LK   Y  DF P+D  C C TC +Y+RAYLHH +   E     LL++HN
Sbjct: 149 GRALTFDGTINLKNARYKLDFRPLDPPCDCYTCRKYSRAYLHHLLKAKEMLGSRLLTIHN 208

Query: 181 IAFQMRLMREIRESIKEQRFPQYVKQYMK 209
           + + +RLMREIRE+I+E  F +YV+++++
Sbjct: 209 LHYYLRLMREIREAIEEGTFEEYVEEFLR 237

This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyzes the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues. Length = 237
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase Back     alignment and domain information
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase Back     alignment and domain information
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|232972 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase, archaeosine-15-forming Back     alignment and domain information
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
KOG3908|consensus396 100.0
TIGR00430368 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin 100.0
TIGR00449367 tgt_general tRNA-guanine transglycosylases, variou 100.0
COG0343372 Tgt Queuine/archaeosine tRNA-ribosyltransferase [T 100.0
PRK00112366 tgt queuine tRNA-ribosyltransferase; Provisional 100.0
PRK01008372 queuine tRNA-ribosyltransferase; Provisional 100.0
PF01702238 TGT: Queuine tRNA-ribosyltransferase; InterPro: IP 100.0
PRK13533487 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 100.0
TIGR00432 540 arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch 100.0
PRK13534 639 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 100.0
KOG3909|consensus414 100.0
COG0343 372 Tgt Queuine/archaeosine tRNA-ribosyltransferase [T 99.94
PRK01008 372 queuine tRNA-ribosyltransferase; Provisional 99.93
KOG3908|consensus 396 99.92
TIGR00430 368 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin 99.91
TIGR00449 367 tgt_general tRNA-guanine transglycosylases, variou 99.91
PRK00112 366 tgt queuine tRNA-ribosyltransferase; Provisional 99.89
PRK13534 639 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 99.79
PRK13533 487 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 99.75
COG1549 519 Queuine tRNA-ribosyltransferases, contain PUA doma 98.86
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 94.48
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 94.13
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 93.92
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 93.88
PRK12330499 oxaloacetate decarboxylase; Provisional 93.79
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 93.52
PF00682237 HMGL-like: HMGL-like of this family is not conserv 93.3
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 93.21
PLN02417280 dihydrodipicolinate synthase 93.17
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 92.9
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 92.36
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 92.33
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 92.29
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 92.09
COG5016472 Pyruvate/oxaloacetate carboxyltransferase [Energy 91.8
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 91.76
PRK12331448 oxaloacetate decarboxylase; Provisional 91.75
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 91.48
PRK04147293 N-acetylneuraminate lyase; Provisional 91.38
PLN02746347 hydroxymethylglutaryl-CoA lyase 91.3
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 91.06
cd00952309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 91.05
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 91.02
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 90.86
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 90.62
PRK14041467 oxaloacetate decarboxylase; Provisional 90.53
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 90.31
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 90.28
PRK09282 592 pyruvate carboxylase subunit B; Validated 90.11
PRK14042 596 pyruvate carboxylase subunit B; Provisional 89.91
PRK03170292 dihydrodipicolinate synthase; Provisional 89.87
PHA01745306 hypothetical protein 89.69
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 89.46
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 89.32
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 89.22
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 89.2
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 88.81
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 88.7
TIGR02313294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 88.67
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 87.86
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 87.78
PRK12581468 oxaloacetate decarboxylase; Provisional 87.73
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 87.59
PRK14040 593 oxaloacetate decarboxylase; Provisional 87.28
KOG2368|consensus316 87.06
TIGR02660365 nifV_homocitr homocitrate synthase NifV. This fami 86.31
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 86.16
PLN02495385 oxidoreductase, acting on the CH-CH group of donor 84.69
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 84.61
PRK11858378 aksA trans-homoaconitate synthase; Reviewed 84.61
PRK12999 1146 pyruvate carboxylase; Reviewed 84.05
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 83.78
PLN02979366 glycolate oxidase 83.7
TIGR01036335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 83.42
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 83.36
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 83.13
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 82.43
PLN02493367 probable peroxisomal (S)-2-hydroxy-acid oxidase 82.24
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 81.7
cd00953279 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas 81.21
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 81.06
PLN03228503 methylthioalkylmalate synthase; Provisional 80.97
>KOG3908|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.8e-77  Score=556.11  Aligned_cols=233  Identities=57%  Similarity=1.104  Sum_probs=228.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115          1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN   80 (319)
Q Consensus         1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~   80 (319)
                      ||+|+||.||+||+|||+.+|.+.+.|++|+|||||++.+||.+|++++.++...|+||||+|+||++.+||++|..|+.
T Consensus       162 ~rveeAM~RsIRWlDRCi~Ah~R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSGGEeK~~Fwr~V~~ct~  241 (396)
T KOG3908|consen  162 PRVEEAMYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTS  241 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccchhhhhhhhcccchHHHHHHHHHHHhcCCCceEecccCCCchHHHHHHHHHHHHc
Confidence            79999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCHH
Q psy14115         81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRA  160 (319)
Q Consensus        81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tRA  160 (319)
                      .||+|||||+||||+|+|++.||++|+||||||||||+||+|.||++.|.++|++.+|+.||.|||+.|.||||++||||
T Consensus       242 ~LP~dkPRYlMGVGya~DlVVCvaLG~DMfDCVyPTRTARFG~alv~~G~~~l~~~k~k~D~~pid~~C~C~tC~~ytRa  321 (396)
T KOG3908|consen  242 SLPPDKPRYLMGVGYAEDLVVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQKKYKSDFGPIDETCGCPTCKKYTRA  321 (396)
T ss_pred             cCCCCCCceeeccCcccceeeeehhCCchhhcccccchhhhccccccccceeecchhhhhcccCCCCCCCCchhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCC-CCChhHhhhhhhcccccc
Q psy14115        161 YLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDE-NYPRWTIDALRAVNIELT  233 (319)
Q Consensus       161 YLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~-~~p~~~~~~~r~~~~~~~  233 (319)
                      |||||..+|..+..||++||++|+.++|+.+|+||.+++|++|++.|+..++.+. +.|+|+++|++.+||++.
T Consensus       322 ylh~l~~~etv~~~lltiHNi~yql~Lmr~vResI~~d~fp~Fvk~Fm~~~~~D~~~~p~w~rdal~~vg~~l~  395 (396)
T KOG3908|consen  322 YLHALVGKETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFKDSREVPAWARDALDNVGIELD  395 (396)
T ss_pred             HHHHHccccccceeeeehhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCCccCcHHHHHHHHhhccccc
Confidence            9999999999999999999999999999999999999999999999999999754 689999999999999875

>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities Back     alignment and domain information
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PRK01008 queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 Back     alignment and domain information
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming Back     alignment and domain information
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>KOG3909|consensus Back     alignment and domain information
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01008 queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>KOG3908|consensus Back     alignment and domain information
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities Back     alignment and domain information
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>PHA01745 hypothetical protein Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>KOG2368|consensus Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PLN03228 methylthioalkylmalate synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2nqz_A385 Trna-Guanine Transglycosylase (Tgt) Mutant In Compl 7e-42
2nqz_A 385 Trna-Guanine Transglycosylase (Tgt) Mutant In Compl 3e-10
2nso_A386 Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, 7e-42
2nso_A 386 Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, 3e-10
4hqv_A385 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 2e-41
4hqv_A 385 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 3e-10
4gcx_A386 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 2e-41
4gcx_A 386 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 3e-10
4hsh_A385 Trna-Guanine Transglycosylase Y106f, V233g Mutant I 2e-41
4hsh_A 385 Trna-Guanine Transglycosylase Y106f, V233g Mutant I 3e-10
3bl3_A386 Trna Guanine Transglycosylase V233g Mutant Apo Stru 2e-41
3bl3_A 386 Trna Guanine Transglycosylase V233g Mutant Apo Stru 3e-10
4gd0_A386 Trna-Guanine Transglycosylase Y106f, C158v Mutant L 2e-40
4gd0_A 386 Trna-Guanine Transglycosylase Y106f, C158v Mutant L 3e-10
1ozm_A386 Y106f Mutant Of Z. Mobilis Tgt Length = 386 2e-40
1ozm_A 386 Y106f Mutant Of Z. Mobilis Tgt Length = 386 3e-10
1enu_A386 A New Target For Shigellosis: Rational Design And C 2e-40
1enu_A 386 A New Target For Shigellosis: Rational Design And C 7e-10
1wkd_A386 Trna-Guanine Transglycosylase Length = 386 2e-40
1wkd_A 386 Trna-Guanine Transglycosylase Length = 386 6e-09
1wke_A386 Trna-Guanine Transglycosylase Length = 386 2e-40
1wke_A 386 Trna-Guanine Transglycosylase Length = 386 7e-10
3hfy_A386 Mutant Of Trna-Guanine Transglycosylase (K52m) Leng 3e-40
3hfy_A 386 Mutant Of Trna-Guanine Transglycosylase (K52m) Leng 7e-10
1efz_A386 Mutagenesis And Crystallographic Studies Of Zymomon 3e-40
1efz_A 386 Mutagenesis And Crystallographic Studies Of Zymomon 2e-09
1wkf_A386 Trna-Guanine Transglycosylase Length = 386 3e-40
1wkf_A 386 Trna-Guanine Transglycosylase Length = 386 7e-10
1y5v_A385 Trna-guanine Transglycosylase (tgt) In Complex With 3e-40
1y5v_A 385 Trna-guanine Transglycosylase (tgt) In Complex With 7e-10
2pot_A386 Trna Guanine Transglycosylase (Tgt) E235q Mutant In 6e-40
2pot_A 386 Trna Guanine Transglycosylase (Tgt) E235q Mutant In 7e-10
2oko_A385 Z. Mobilis Trna Guanine Transglycosylase E235q Muta 6e-40
2oko_A 385 Z. Mobilis Trna Guanine Transglycosylase E235q Muta 7e-10
3unt_A388 Trna-Guanine Transglycosylase E339q Mutant Length = 7e-40
3unt_A 388 Trna-Guanine Transglycosylase E339q Mutant Length = 7e-10
1pxg_A382 Crystal Structure Of The Mutated Trna-Guanine Trans 9e-40
1pxg_A 382 Crystal Structure Of The Mutated Trna-Guanine Trans 7e-10
3uvi_A388 Trna-Guanine Transglycosylase C158s C281s W326e E33 1e-38
3uvi_A 388 Trna-Guanine Transglycosylase C158s C281s W326e E33 6e-10
2ash_A381 Crystal Structure Of Queuine Trna-Ribosyltransferas 1e-37
2ash_A 381 Crystal Structure Of Queuine Trna-Ribosyltransferas 4e-10
1iq8_A 582 Crystal Structure Of Archaeosine Trna-Guanine Trans 4e-07
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With 7-Deaza-7- Aminomethyl-Guanine Length = 385 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (423), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2   RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
           R A + +R++RW  R   A   R    +N  +F I QG + E LR+  A  + E   +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58  AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
           AVGGLSGGE +++ +  +  S+  LP DKP Y+MG+G   D++     G DMFDCV PTR
Sbjct: 226 AVGGLSGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
           + R G A    G + ++   ++ D  P+D++C C+ C +++RAY+HH I   E     L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
           + HNIAF  +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With 7-Deaza-7- Aminomethyl-Guanine Length = 385 Back     alignment and structure
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v, A232s, V233g- Apo-Structure Length = 386 Back     alignment and structure
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v, A232s, V233g- Apo-Structure Length = 386 Back     alignment and structure
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Preq1 Length = 386 Back     alignment and structure
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Preq1 Length = 386 Back     alignment and structure
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure Length = 386 Back     alignment and structure
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure Length = 386 Back     alignment and structure
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant Length = 386 Back     alignment and structure
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant Length = 386 Back     alignment and structure
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt Length = 386 Back     alignment and structure
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt Length = 386 Back     alignment and structure
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And Crystallographic Studies Of Inhibitors Of Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And Crystallographic Studies Of Inhibitors Of Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m) Length = 386 Back     alignment and structure
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m) Length = 386 Back     alignment and structure
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas Mobilis Trna- Guanine Transglycosylase To Elucidate The Role Of Serine 103 For Enzymatic Activity Length = 386 Back     alignment and structure
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas Mobilis Trna- Guanine Transglycosylase To Elucidate The Role Of Serine 103 For Enzymatic Activity Length = 386 Back     alignment and structure
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With 6-amino-4-(2- Phenylethyl)-1,7-dihydro-8h-imidazo[4, 5-g]quinazolin-8-one Length = 385 Back     alignment and structure
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With 6-amino-4-(2- Phenylethyl)-1,7-dihydro-8h-imidazo[4, 5-g]quinazolin-8-one Length = 385 Back     alignment and structure
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In Complex With Guanine Length = 386 Back     alignment and structure
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In Complex With Guanine Length = 386 Back     alignment and structure
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant Apo-Structure At Ph 5.5 Length = 385 Back     alignment and structure
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant Apo-Structure At Ph 5.5 Length = 385 Back     alignment and structure
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant Length = 388 Back     alignment and structure
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant Length = 388 Back     alignment and structure
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine Transglycosylase (Tgt) D280e Complexed With Preq1 Length = 382 Back     alignment and structure
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine Transglycosylase (Tgt) D280e Complexed With Preq1 Length = 382 Back     alignment and structure
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q Mutant Length = 388 Back     alignment and structure
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q Mutant Length = 388 Back     alignment and structure
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga Maritima At 1.90 A Resolution Length = 381 Back     alignment and structure
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga Maritima At 1.90 A Resolution Length = 381 Back     alignment and structure
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine Transglycosylase From Pyrococcus Horikoshii Length = 582 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2ash_A381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 3e-84
2ash_A 381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 2e-20
3bld_A386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 3e-83
3bld_A 386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 5e-22
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 2e-65
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 1e-17
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Length = 381 Back     alignment and structure
 Score =  257 bits (660), Expect = 3e-84
 Identities = 81/205 (39%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 8   DRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEA 67
           +RT RW  R   A +    Q +F IVQGG+   LR++ A Q+     +G+A+GGLS GE 
Sbjct: 171 ERTYRWALRSKKAFKTEN-QALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEE 229

Query: 68  KEDFWYSVL-VSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALV 126
           +      +  V++  LP+DKPRY MG G    +L     G DMFD VFPTR AR G+AL 
Sbjct: 230 RSLT-LEMTEVTVEFLPEDKPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALT 288

Query: 127 RQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHNIAFQM 185
             G+L LK         P+D +C C TC  +TR+Y+HH     E     LL++HNI F +
Sbjct: 289 WNGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMI 348

Query: 186 RLMREIRESIKEQRFPQYVKQYMKD 210
            LM+E+R SI+   F +   + ++ 
Sbjct: 349 SLMKEVRRSIESGTFKELKSKVVEV 373
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Length = 381 Back     alignment and structure
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Length = 386 Back     alignment and structure
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Length = 386 Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582 Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3bld_A386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 100.0
2ash_A381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 100.0
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 100.0
3bld_A 386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 99.92
2ash_A 381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 99.91
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 99.69
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 94.92
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 93.48
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 93.26
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 93.23
3ble_A337 Citramalate synthase from leptospira interrogans; 93.06
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 91.47
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 91.28
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 91.27
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 91.08
1rqb_A539 Transcarboxylase 5S subunit; TIM-barrel, carbamyla 90.57
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 90.53
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 90.5
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 90.48
3bg3_A 718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 90.23
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 90.02
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 89.96
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 89.96
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 89.53
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 89.52
2r8w_A332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 89.19
3rmj_A370 2-isopropylmalate synthase; LEUA, truncation, neis 89.1
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 89.03
1w3i_A293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 88.8
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 88.64
2rfg_A297 Dihydrodipicolinate synthase; beta barrel, amino-a 88.61
2v9d_A343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 88.6
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 88.46
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 88.28
2nx9_A464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 88.05
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 87.81
3fkr_A309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 87.8
3zwt_A367 Dihydroorotate dehydrogenase (quinone), mitochond; 87.66
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 87.57
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 87.51
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 87.41
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 87.21
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 86.7
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 85.71
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 85.45
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 85.44
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 85.39
3dz1_A313 Dihydrodipicolinate synthase; lysine biosynthesis, 85.19
4dpp_A360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 85.03
3qfe_A318 Putative dihydrodipicolinate synthase family PROT; 84.88
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 84.25
3vkj_A368 Isopentenyl-diphosphate delta-isomerase; type 2 is 82.94
3e96_A316 Dihydrodipicolinate synthase; structural genomics, 81.53
3d0c_A314 Dihydrodipicolinate synthase; lysine biosynthesis, 81.05
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Back     alignment and structure
Probab=100.00  E-value=3.1e-72  Score=549.24  Aligned_cols=214  Identities=36%  Similarity=0.741  Sum_probs=197.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCCC----CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHH
Q psy14115          1 PRVAIAKDRTVRWLDRCLAAHRNPTT----QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVL   76 (319)
Q Consensus         1 ~r~~~av~RT~rWl~r~~~~~~~~~~----q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~   76 (319)
                      +|+++||+||+||++||++++++.+.    |++|||||||.++|||++|++++.+++++||||||+++||++++++++|+
T Consensus       166 ~~~~~sv~rT~rW~~r~~~~~~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~~~GyaIGGlsvge~~~~~~~~l~  245 (386)
T 3bld_A          166 SRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLD  245 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcccccccEEEEEcCCCCHHHHHHHHHHHHhcCCCCeeEcCcccCCCHHHHHHHHH
Confidence            37999999999999999999876544    89999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCc
Q psy14115         77 VSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCAR  156 (319)
Q Consensus        77 ~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~  156 (319)
                      .+.+.||++||||+||+|+|++|+.+|++|||||||++|+|.||+|.|||++|.+||++.+|++||+||+++|+||+|++
T Consensus       246 ~~~~~LP~~kPRylmGvg~P~~il~~V~~GvDmFDcv~ptr~Ar~G~alt~~g~i~l~~~~y~~D~~Pld~~C~C~tC~~  325 (386)
T 3bld_A          246 FSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQK  325 (386)
T ss_dssp             HHGGGSCTTSCEEETTCCCHHHHHHHHTTTCCEEC----------CEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHH
T ss_pred             HHHhhCCCCCcEEEeCCCCHHHHHHHHHcCCCEEeCcHHHHHHhCCEEEcCCccEECcchhhccCCCCCCCCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCC
Q psy14115        157 YTRAYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPD  214 (319)
Q Consensus       157 ~tRAYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~  214 (319)
                      |||||||||+ ++||||++||++||+++|.+||++||+||++|+|++|+++|.++|+++
T Consensus       326 ysRAYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~f~e~~~~f~~~~~~~  384 (386)
T 3bld_A          326 WSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFAR  384 (386)
T ss_dssp             CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC--
T ss_pred             cCHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence            9999999999 999999999999999999999999999999999999999999999874
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Back     alignment and structure
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Back     alignment and structure
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1r5ya_372 c.1.20.1 (A:) Queosine tRNA-guanine transglycosyla 3e-57
d1iq8a1355 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transg 1e-36
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Length = 372 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

 Score =  186 bits (474), Expect = 3e-57
 Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 1/202 (0%)

Query: 12  RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDF 71
           R  D   +         +F I QG + E LR+  A  + E   +G+AVGGL+ GE +++ 
Sbjct: 171 RSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEM 230

Query: 72  WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQL 131
           +  +  S+  LP DKP Y+MG+G   D++     G DMFDCV PTR+ R G A    G +
Sbjct: 231 FRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPI 290

Query: 132 QLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHNIAFQMRLMRE 190
            ++   ++ D  P+D++C C+ C +++RAY+HH I   E     L++ HNIAF  +LM++
Sbjct: 291 NIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQK 350

Query: 191 IRESIKEQRFPQYVKQYMKDAY 212
           IR+SI E RF Q+ + +    +
Sbjct: 351 IRDSISEGRFSQFAQDFRARYF 372
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 355 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1r5ya_372 Queosine tRNA-guanine transglycosylase {Zymomonas 100.0
d1iq8a1355 Archaeosine tRNA-guanine transglycosylase, N-termi 100.0
d1r5ya_ 372 Queosine tRNA-guanine transglycosylase {Zymomonas 99.79
d1iq8a1 355 Archaeosine tRNA-guanine transglycosylase, N-termi 99.75
d1nvma2289 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d 94.67
d1rqba2303 Transcarboxylase 5S subunit, N-terminal domain {Pr 93.66
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 93.42
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 88.72
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 87.29
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 86.36
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 83.3
d1f74a_293 N-acetylneuraminate lyase {Haemophilus influenzae 82.82
d1w3ia_293 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus 81.08
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=8.7e-68  Score=514.19  Aligned_cols=211  Identities=36%  Similarity=0.736  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC----CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHH
Q psy14115          2 RVAIAKDRTVRWLDRCLAAHRNP----TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLV   77 (319)
Q Consensus         2 r~~~av~RT~rWl~r~~~~~~~~----~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~   77 (319)
                      +++++|+||++|++||++++.+.    ..|.+|||||||.++|||++|++++.+++++||+|||+++|++++++.++|+.
T Consensus       157 ~~~~~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~  236 (372)
T d1r5ya_         157 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDF  236 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCcccceecccccchhhhHHHHHHHHHHhhccCceeccccccCcchHHHHHHHHh
Confidence            67899999999999999876542    25899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcC
Q psy14115         78 SINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARY  157 (319)
Q Consensus        78 ~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~  157 (319)
                      +.+.||++||||+||+|+|++|+.+|++|||||||++|++.||+|+|||++|.+||++.+|+.|++||+++|+||+|++|
T Consensus       237 ~~~~Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~  316 (372)
T d1r5ya_         237 SVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKW  316 (372)
T ss_dssp             HGGGSCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHC
T ss_pred             cccccccccceeecCCCCHHHHHHhhccCCCcccccccchhhhccceEecCCceeeccccccccCCCcCCCCCChhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhC
Q psy14115        158 TRAYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAY  212 (319)
Q Consensus       158 tRAYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~  212 (319)
                      ||||||||+ ++||+|++||++|||++|.+||++||+||++|+|++|+++|.++||
T Consensus       317 sraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~  372 (372)
T d1r5ya_         317 SRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF  372 (372)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred             CHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhC
Confidence            999999999 9999999999999999999999999999999999999999999986
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure