Psyllid ID: psy14122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MHTKRQQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHccccccHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEHcccccHHHHHHHcccHHHHHcHHHHHccccccHHHccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccHccccEEEEEEcccccHHHHHcccHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhtkrqqrfqlnkispfssvsimadprfriedgelseESKKVAEVELRETPERVQESLRQLKQMlkgpwdpkvlstDQILRVLYLIHLAAirepesqvrggvivldfdglstkqalqftptFSYKLLTFIQDAlplrvkevhivkepiYFNLVWRLFKPFIREKLQKR
Flexible Loop (DISEMBL)
mhtkrqqrfqlnkispfssvsimaDPRFriedgelseeskkvaevelretpervQESLRQLKQmlkgpwdpkvlSTDQILRVLYLIHLAairepesqvrGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVhivkepiyfnlvwRLFKPFIREKLQKR
Low Complexity Region (SEG)
MHTKRQQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR
Disordered region (IsUnstruct)
*****************************************************************KGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIR******
Disordered Region (DISOPRED)
**TKRQQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQK*
Disordered Region (DISEMBL)
********FQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR
Disordered Region (DISPRO)
***KRQQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQ**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTKRQQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
P41034	278	Alpha-tocopherol transfer	no	N/A	0.595	0.359	0.33	2e-14
Q9D3D0	343	Alpha-tocopherol transfer	yes	N/A	0.595	0.291	0.37	2e-14
Q8BWP5	278	Alpha-tocopherol transfer	no	N/A	0.595	0.359	0.33	2e-14
Q9BTX7	342	Alpha-tocopherol transfer	yes	N/A	0.595	0.292	0.36	2e-14
Q5RFR0	342	Alpha-tocopherol transfer	yes	N/A	0.595	0.292	0.36	3e-14
P49638	278	Alpha-tocopherol transfer	no	N/A	0.595	0.359	0.33	4e-14
P10123	317	Retinaldehyde-binding pro	no	N/A	0.595	0.315	0.31	2e-12
Q9D4C9	354	Clavesin-1 OS=Mus musculu	no	N/A	0.654	0.310	0.327	2e-12
A6JFQ6	354	Clavesin-1 OS=Rattus norv	no	N/A	0.654	0.310	0.327	2e-12
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	no	N/A	0.654	0.310	0.327	2e-12

>sp|P41034|TTPA_RAT Alpha-tocopherol transfer protein OS=Rattus norvegicus GN=Ttpa PE=1 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct: 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQISHAFQITPSVAKKIAA 181

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK++ R
Sbjct: 182 VVTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKGR 221

Binds alpha-tocopherol and enhances its transfer between separate membranes.
Rattus norvegicus (taxid: 10116)

>sp|Q9D3D0|TTPAL_MOUSE Alpha-tocopherol transfer protein-like OS=Mus musculus GN=Ttpal PE=2 SV=3

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 58/100 (58%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct: 152 WIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 211

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD  P+R+K VHIV EP  F  ++ + KPF++EK+  R
Sbjct: 212 ILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANR 251

May act as a protein that binds a hydrophobic ligand.

Mus musculus (taxid: 10090)

>sp|Q8BWP5|TTPA_MOUSE Alpha-tocopherol transfer protein OS=Mus musculus GN=Ttpa PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct: 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKKIAA 181

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK++ R
Sbjct: 182 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKDR 221

Binds alpha-tocopherol and enhances its transfer between separate membranes.

Mus musculus (taxid: 10090)

>sp|Q9BTX7|TTPAL_HUMAN Alpha-tocopherol transfer protein-like OS=Homo sapiens GN=TTPAL PE=2 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct: 151 WIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 210

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD  P+R+K VH+V EP  F  ++ + KPF++EK+  R
Sbjct: 211 ILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANR 250

May act as a protein that binds a hydrophobic ligand.

Homo sapiens (taxid: 9606)

>sp|Q5RFR0|TTPAL_PONAB Alpha-tocopherol transfer protein-like OS=Pongo abelii GN=TTPAL PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct: 151 WIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 210

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD  P+R+K VH+V EP  F  ++ + KPF++EK+  R
Sbjct: 211 ILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANR 250

May act as a protein that binds a hydrophobic ligand.

Pongo abelii (taxid: 9601)

>sp|P49638|TTPA_HUMAN Alpha-tocopherol transfer protein OS=Homo sapiens GN=TTPA PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 59/100 (59%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct: 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 181

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 182 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 221

Binds alpha-tocopherol and enhances its transfer between separate membranes.

Homo sapiens (taxid: 9606)

>sp|P10123|RLBP1_BOVIN Retinaldehyde-binding protein 1 OS=Bos taurus GN=RLBP1 PE=1 SV=4

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 57/100 (57%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WD + ++ D+IL+   +I    +   E+Q+ G  I+ +F G + +QA    P+   K++ 
Sbjct: 166 WDSEEITFDEILQAYCVILEKLLENEETQINGFCIIENFKGFTMQQAAGLRPSDLRKMVD 225

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD+ P R K +H + +P YF   + + KPF++ KL +R
Sbjct: 226 MLQDSFPARFKAIHFIYQPWYFTTTYNVVKPFLKSKLLQR 265

Soluble retinoid carrier essential the proper function of both rod and cone photoreceptors. Participates in the regeneration of active 11-cis-retinol and 11-cis-retinaldehyde, from the inactive 11-trans products of the rhodopsin photocycle and in the de novo synthesis of these retinoids from 11-trans metabolic precursors. The cycling of retinoids between photoreceptor and adjacent pigment epithelium cells is known as the 'visual cycle'.

Bos taurus (taxid: 9913)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%)

Query: 59  RQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQF 118
           R++  +    WD    S   ILR + L     I +PE Q+ G ++++D+   S KQA + 
Sbjct: 138 RKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKL 197

Query: 119 TPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           TP+     +  +QD+ P R   VH V +P Y + ++ L KPF+++K +KR
Sbjct: 198 TPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%)

Query: 59  RQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQF 118
           R++  +    WD    S   ILR + L     I +PE Q+ G ++++D+   S KQA + 
Sbjct: 138 RKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKL 197

Query: 119 TPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           TP+     +  +QD+ P R   VH V +P Y + ++ L KPF+++K +KR
Sbjct: 198 TPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%)

Query: 59  RQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQF 118
           R++  +    WD    S   ILR + L     I +PE Q+ G ++++D+   S KQA + 
Sbjct: 138 RKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKL 197

Query: 119 TPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           TP+     +  +QD+ P R   VH V +P Y + ++ L KPF+++K +KR
Sbjct: 198 TPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
156554809	248	PREDICTED: clavesin-1-like [Nasonia vitr	0.595	0.403	0.64	9e-34
307195423	281	Retinaldehyde-binding protein 1 [Harpegn	0.601	0.359	0.594	8e-33
158288192	292	AGAP009385-PA [Anopheles gambiae str. PE	0.797	0.458	0.532	1e-32
289739899	296	phosphatidylinositol transfer protein SE	0.517	0.293	0.61	1e-32
383864671	287	PREDICTED: clavesin-1-like [Megachile ro	0.595	0.348	0.61	1e-32
91083015	288	PREDICTED: similar to CRALBP [Tribolium	0.696	0.406	0.555	1e-32
340720600	287	PREDICTED: clavesin-1-like [Bombus terre	0.595	0.348	0.61	2e-32
242006599	287	conserved hypothetical protein [Pediculu	0.696	0.407	0.555	3e-32
350401207	287	PREDICTED: clavesin-1-like [Bombus impat	0.595	0.348	0.6	5e-32
357623555	272	putative CRALBP [Danaus plexippus]	0.690	0.426	0.568	7e-32

>gi|156554809|ref|XP_001606183.1| PREDICTED: clavesin-1-like [Nasonia vitripennis]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 84/100 (84%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDP  ++ DQ+ R+ YLIH AAI EPE+QV G V+++DF+GLS KQ L  TP+FS +LL+
Sbjct: 88  WDPARVNADQMFRIFYLIHEAAILEPETQVHGVVVIMDFEGLSMKQVLGLTPSFSMRLLS 147

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           FIQDA+PLR+KEVH+VKEP  FN+VW++FKPF+REKL+KR
Sbjct: 148 FIQDAMPLRLKEVHMVKEPFLFNMVWQMFKPFVREKLKKR 187

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195423|gb|EFN77309.1| Retinaldehyde-binding protein 1 [Harpegnathos saltator]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 82/101 (81%)

Query: 68  PWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLL 127
           PWDP  ++ DQ+ RV Y+IH  A  EPE+Q+ G V+++DFDGLS KQ +  +P+FS  LL
Sbjct: 126 PWDPSKVTADQMFRVFYIIHQLAALEPETQICGSVVIMDFDGLSMKQVMGLSPSFSMTLL 185

Query: 128 TFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           +FIQDA+PLR+KEVHIVK+P  FN+VW++FKPF++EKL+KR
Sbjct: 186 SFIQDAMPLRLKEVHIVKQPFLFNMVWQMFKPFVKEKLKKR 226

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288192|ref|XP_559860.3| AGAP009385-PA [Anopheles gambiae str. PEST] gi|157019261|gb|EAL41409.3| AGAP009385-PA [Anopheles gambiae str. PEST]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 3/137 (2%)

Query: 35  LSEESKKVAEVE---LRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAI 91
           L  E +K+A VE   +     R Q+  R L       WDPK +S++Q+ RV +LIHL A 
Sbjct: 93  LKPEEEKLAFVEHNVVNVLTNRDQKGRRVLLVNCGAAWDPKAVSSEQLFRVFFLIHLVAQ 152

Query: 92  REPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFN 151
            EP +Q+ G V+VLDFDGLS KQ    +P+FS +L+TFIQDA+PLR+KEVHI+K+P  FN
Sbjct: 153 LEPATQINGVVVVLDFDGLSLKQVKALSPSFSKRLITFIQDAMPLRLKEVHILKQPYIFN 212

Query: 152 LVWRLFKPFIREKLQKR 168
           +VW LFKPFIREKL+ R
Sbjct: 213 MVWALFKPFIREKLKSR 229

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739899|gb|ADD18697.1| phosphatidylinositol transfer protein SEC14 [Glossina morsitans morsitans]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 81/100 (81%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W+P  ++TD + R+LYL+H+AA  EPE+QVRG V+++DF+GLS KQ    TP+FS +LLT
Sbjct: 137 WNPSYVNTDDVFRILYLVHIAAQLEPETQVRGAVVIMDFEGLSMKQVTALTPSFSKRLLT 196

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           FIQDA+P+R+KE+H VK+P  F LVW LFKPF+REKL KR
Sbjct: 197 FIQDAMPIRLKELHFVKQPFIFKLVWSLFKPFVREKLNKR 236

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864671|ref|XP_003707801.1| PREDICTED: clavesin-1-like [Megachile rotundata]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 84/100 (84%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDP  +S DQILR+LYL+H  A++EPE+Q+ G V+V+D++GLS KQ +  TP+F+ KLLT
Sbjct: 127 WDPAKVSADQILRLLYLVHELAMQEPETQIYGTVVVMDYEGLSMKQVMGLTPSFNMKLLT 186

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           FIQDA+PLR+KEVHIVK+P  FN+VW++FKP ++EKL+ R
Sbjct: 187 FIQDAMPLRLKEVHIVKQPFLFNMVWQMFKPLVKEKLKSR 226

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083015|ref|XP_974607.1| PREDICTED: similar to CRALBP [Tribolium castaneum] gi|270007020|gb|EFA03468.1| hypothetical protein TcasGA2_TC013464 [Tribolium castaneum]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 88/117 (75%)

Query: 52  ERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLS 111
            R  +  R L   + G WD   +++DQ+ R+ YLIH AA+ EPE+QVRG V+++DFDGLS
Sbjct: 112 NRDNKGRRVLLVNVGGSWDTSKVTSDQLFRIFYLIHEAAVLEPETQVRGVVVIMDFDGLS 171

Query: 112 TKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            KQ   F+P FS KLL+FIQDA+PLR+KEVH+VK+P  F +VW++FKPFI+EKL+ R
Sbjct: 172 LKQISAFSPAFSLKLLSFIQDAMPLRLKEVHMVKQPFIFKMVWQIFKPFIKEKLKNR 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720600|ref|XP_003398722.1| PREDICTED: clavesin-1-like [Bombus terrestris]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 81/100 (81%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDP  +S DQI RVLYL+H  AI EP +Q+ G V+++DFDGLS KQ +  TP+F  KLLT
Sbjct: 127 WDPSAVSADQIFRVLYLVHQLAIWEPLTQIYGTVVIMDFDGLSMKQVMGMTPSFCMKLLT 186

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           FIQ+A+PLR+KEVH VK+P  FN+VW++FKPF+++KL+KR
Sbjct: 187 FIQEAMPLRLKEVHFVKQPFLFNMVWQMFKPFVKDKLKKR 226

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006599|ref|XP_002424137.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507454|gb|EEB11399.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 84/117 (71%)

Query: 52  ERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLS 111
            R Q+  R     +   WDP  +S DQ+ ++ YLIHLAA+ EP +QV G V++LDFDGL 
Sbjct: 111 NRDQDGRRIFVTNVGKKWDPSKVSNDQVFQLFYLIHLAAMMEPATQVNGVVVILDFDGLG 170

Query: 112 TKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            KQ    TPTFS +LL+FIQDA+PLR+K+VHIVK+P+ FN VW++FKP IREKL  R
Sbjct: 171 LKQVAALTPTFSLRLLSFIQDAMPLRLKQVHIVKQPLLFNAVWKIFKPIIREKLNNR 227

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401207|ref|XP_003486083.1| PREDICTED: clavesin-1-like [Bombus impatiens]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 81/100 (81%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDP  +S DQI RVLYL+H  A+ EP +Q+ G V+++DF+GLS KQ +  TP+F  KLLT
Sbjct: 127 WDPSAVSADQIFRVLYLVHQLAMWEPLTQIYGTVVIMDFEGLSMKQVMGMTPSFCMKLLT 186

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           FIQ+A+PLR+KEVH VK+P  FN+VW++FKPF++EKL+KR
Sbjct: 187 FIQEAMPLRLKEVHFVKQPFLFNMVWQMFKPFVKEKLKKR 226

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623555|gb|EHJ74659.1| putative CRALBP [Danaus plexippus]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 85/116 (73%)

Query: 53  RVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLST 112
           R  +  R L   + G W+PK ++ DQ+ R+ YLIH AA+ EPESQVRG V+++DF  +  
Sbjct: 96  RDDKGRRVLIVNVGGSWNPKKVTADQLFRLFYLIHEAAMLEPESQVRGTVVIMDFHKMGM 155

Query: 113 KQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            Q +  TP FS +LLTFIQDALPLR+KEVH VKEP+ FN+VW+LFKP IREKL+ R
Sbjct: 156 SQTMGLTPAFSKRLLTFIQDALPLRLKEVHFVKEPMIFNMVWKLFKPLIREKLKGR 211

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0031913	294	CG5958 [Drosophila melanogaste	0.595	0.340	0.57	9.2e-36
FB|FBgn0032783	324	CG10237 [Drosophila melanogast	0.702	0.364	0.423	4.3e-22
FB|FBgn0031914	311	CG5973 [Drosophila melanogaste	0.702	0.379	0.398	3.1e-19
UNIPROTKB|E2R9P7	342	TTPAL "Uncharacterized protein	0.595	0.292	0.36	4.6e-17
UNIPROTKB|F1MTT2	342	LOC100849639 "Uncharacterized	0.595	0.292	0.36	9.4e-17
UNIPROTKB|F1SDS2	342	TTPAL "Uncharacterized protein	0.595	0.292	0.36	1e-16
UNIPROTKB|Q5F355	300	TTPAL "Uncharacterized protein	0.595	0.333	0.35	5e-16
ZFIN|ZDB-GENE-040426-1662	312	rlbp1a "retinaldehyde binding	0.595	0.320	0.31	9.3e-16
UNIPROTKB|J9P268	219	TTPA "Uncharacterized protein"	0.595	0.456	0.35	2e-15
MGI|MGI:1354168	278	Ttpa "tocopherol (alpha) trans	0.595	0.359	0.33	2.6e-15

FB|FBgn0031913 CG5958 [Drosophila melanogaster (taxid:7227)]

 Score = 328 (120.5 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 57/100 (57%), Positives = 80/100 (80%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             WDP  +++D++ R+LY++HLAA  E E+QVRG V ++DF+GLS KQ    +P+FS +LLT
Sbjct:   135 WDPSDITSDEMFRMLYMVHLAAQLEEETQVRGVVCIMDFEGLSMKQVKALSPSFSKRLLT 194

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
             FIQ+A+PLR+KEVH VK+P  FN+VW LFKPF+++KL  R
Sbjct:   195 FIQEAMPLRMKEVHFVKQPFIFNMVWSLFKPFVKQKLNNR 234

GO:0016918 "retinal binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0032783 CG10237 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/118 (42%), Positives = 77/118 (65%)

Query:    51 PERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGL 110
             P R Q   R L   L   W  K ++ D++ +   L   AA+ EPE+Q+ G V++ D DGL
Sbjct:   147 PNRDQLGRRILVLELGKRWKHKQVTLDEVFKGAVLFLEAAMLEPETQICGAVVIFDMDGL 206

Query:   111 STKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
             S +Q  QFTP F+ +++ ++QD++PLR+K +HIV +P  F +V+ LFKPF++EKL+ R
Sbjct:   207 SLQQTWQFTPPFAKRIVDWLQDSVPLRIKAIHIVNQPKIFQVVFALFKPFLKEKLRSR 264

GO:0016918 "retinal binding" evidence=ISS

GO:0008431 "vitamin E binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

FB|FBgn0031914 CG5973 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/118 (39%), Positives = 70/118 (59%)

Query:    51 PERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGL 110
             P+R Q   R L       W P  +    + R + L  L ++ EP SQ+ G V+++D +GL
Sbjct:   129 PQRDQHGRRLLVLEAGKKWKPSQVPLVDLFRGIQLTVLGSMVEPYSQICGSVVIIDMEGL 188

Query:   111 STKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
                   QFTP+F+  LL +IQ+ + +R+K VHIV     FN+++ +FKPFIREKL+KR
Sbjct:   189 PLSHITQFTPSFAAMLLDYIQECICMRLKAVHIVNNSYIFNMLFAVFKPFIREKLRKR 246

GO:0005885 "Arp2/3 protein complex" evidence=ISS

GO:0016918 "retinal binding" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|E2R9P7 TTPAL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct:   151 WIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 210

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              +QD  P+R+K VH+V EP  F  ++ + KPF++EK+  R
Sbjct:   211 ILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANR 250

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1MTT2 LOC100849639 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct:   151 WIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 210

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              +QD  P+R+K VH+V EP  F  ++ + KPF++EK+  R
Sbjct:   211 ILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANR 250

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1SDS2 TTPAL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 185 (70.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 36/100 (36%), Positives = 57/100 (57%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             W P      + +R  YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct:   153 WIPSNYPITENIRATYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 212

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              +QD  P+R+K VH+V EP  F  ++ + KPF++EK+  R
Sbjct:   213 ILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANR 252

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5F355 TTPAL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
 Identities = 35/100 (35%), Positives = 58/100 (58%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             W P      + +R +YL     I+  E+QV G VI+ D+ G+S  +A  F P  + K++ 
Sbjct:   149 WTPSHYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFVAKKVIG 208

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              +QD  P+R+K V+I+ EP  F  ++ + KPF++EK+  R
Sbjct:   209 ILQDGFPIRIKAVNIINEPRIFKGIFAIIKPFLKEKIANR 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-040426-1662 rlbp1a "retinaldehyde binding protein 1a" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 31/100 (31%), Positives = 56/100 (56%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             WD + ++ D+ LR   +I    +   E+Q+ G V++ +F G + + A     T   K++ 
Sbjct:   165 WDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQHASGIKHTELKKMVD 224

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              +QD+ P R K VH++ +P YF   + + KPF++ KL +R
Sbjct:   225 MLQDSFPARFKAVHVIHQPWYFTTTYNVVKPFMKSKLLER 264

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0007634 "optokinetic behavior" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

UNIPROTKB|J9P268 TTPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 35/100 (35%), Positives = 59/100 (59%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             WDPKV +   + RV  +     ++E E+Q  G   V D +G     A Q TP+ + K+  
Sbjct:    63 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAVFDLEGWQFSHAFQITPSVAKKIAA 122

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              + D+ PL+V+ +H++ EPI F+ V+ + KPF+ EK+++R
Sbjct:   123 VLTDSFPLKVRGIHLINEPIIFHAVFSMIKPFLTEKIKER 162

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:1354168 Ttpa "tocopherol (alpha) transfer protein" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query:    69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
             WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct:   122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKKIAA 181

Query:   129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK++ R
Sbjct:   182 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKDR 221

GO:0001890 "placenta development" evidence=IMP

GO:0001892 "embryonic placenta development" evidence=IMP

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005770 "late endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008431 "vitamin E binding" evidence=ISO;TAS

GO:0009268 "response to pH" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IMP

GO:0019842 "vitamin binding" evidence=ISO

GO:0042360 "vitamin E metabolic process" evidence=ISO;IMP

GO:0090212 "negative regulation of establishment of blood-brain barrier" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	6e-21
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	4e-19
smart00516	158	smart00516, SEC14, Domain in homologues of a S	9e-13

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 83.1 bits (206), Expect = 6e-21
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 67  GPWDPKVLSTDQILRVLYLIHLAAIRE-PESQVRGGVIVLDFDGLSTKQALQFTPTFSYK 125
           G  DPK  S ++++R L L+   A+   PE Q+ G  +++D  GLS     ++  +F  K
Sbjct: 22  GRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGLSLSNMDKWPISFLKK 81

Query: 126 LLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           +L  +QD  P R+ ++ IV  P  FN++W+L KPF+  K +++
Sbjct: 82  ILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREK 124

Length = 152

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 78.6 bits (194), Expect = 4e-19
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
              K L ++++LR L       ++E + QV G V+++D  GLS    L   P+   K+L 
Sbjct: 32  DLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILK 90

Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD  P R+K V+I+  P +F ++W++ KPF+ EK +K+
Sbjct: 91  ILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 67  GPWDPKVLSTDQILR--VLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSY 124
           G +D K ++ +++LR  V  L  +    +    + G  ++ D  GLS         +   
Sbjct: 28  GRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSMSN---PDLSVLR 84

Query: 125 KLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           K+L  +QD  P R+ +V+I+  P +F ++W++ KPF+ EK +++
Sbjct: 85  KILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREK 128

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG1471|consensus	317		99.91
KOG1470|consensus	324		99.88
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.88
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.83
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.78
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	97.98
KOG4406|consensus	467		95.36

>KOG1471|consensus

Probab=99.91  E-value=6.7e-25  Score=180.87  Aligned_cols=134  Identities=28%  Similarity=0.482  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHH-HHHHHHH-------H----c-----------------CCCCC------------CC
Q psy14122         35 LSEESKKVAEVELRETPERVQES-LRQLKQM-------L----K-----------------GPWDP------------KV   73 (168)
Q Consensus        35 l~~~~~~~A~~~L~E~~~~R~~~-~~~lr~~-------i----~-----------------g~~dp------------~~   73 (168)
                      ..++++++|+++|..+..||.+. ++.+-..       .    .                 |..|+            .+
T Consensus        54 a~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~  133 (317)
T KOG1471|consen   54 ARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLK  133 (317)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHH
Confidence            46689999999999999999997 2222221       0    0                 44443            34


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHH
Q psy14122         74 LSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLV  153 (168)
Q Consensus        74 ~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i  153 (168)
                      ++..++.+...+.+|......+.+++|++.|+|++|++++|+++..++.+++++.++|++||+|++++||||+|++|+++
T Consensus       134 ~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~  213 (317)
T KOG1471|consen  134 YHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSAL  213 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHH
Confidence            55666666666677776666677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcHHhhcC
Q psy14122        154 WRLFKPFIREKLQKR  168 (168)
Q Consensus       154 ~~ivkpfL~~k~~~R  168 (168)
                      |+++||||+++|++|
T Consensus       214 ~~~ikpfL~~kt~~k  228 (317)
T KOG1471|consen  214 WKVVKPFLDEKTRKK  228 (317)
T ss_pred             HHHHhccCCHHHHhh
Confidence            999999999999986

>KOG1470|consensus

Probab=99.88  E-value=5.7e-23  Score=168.23  Aligned_cols=131  Identities=21%  Similarity=0.272  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHHHH----HHHHHc------------------------CCCCCCCCCHHHHHHHHHHH
Q psy14122         35 LSEESKKVAEVELRETPERVQESLRQ----LKQMLK------------------------GPWDPKVLSTDQILRVLYLI   86 (168)
Q Consensus        35 l~~~~~~~A~~~L~E~~~~R~~~~~~----lr~~i~------------------------g~~dp~~~s~~~~~r~~~~~   86 (168)
                      ...+++++|.+||.++..||.+...+    -.+...                        ..+.++..|..++.|+.+++
T Consensus        58 Ar~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~  137 (324)
T KOG1470|consen   58 ARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYT  137 (324)
T ss_pred             HcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence            45678999999999999999996111    122211                        23345688999999999999


Q ss_pred             HHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHhh
Q psy14122         87 HLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQ  166 (168)
Q Consensus        87 ~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~  166 (168)
                      +|.++.....+++.+++++|++|+|++   ..+.+..+.+++++|++||+||+..+++|+||+|..+|+++|||++++|+
T Consensus       138 mE~Ai~~lp~~qe~~~~L~D~~~fs~s---N~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~  214 (324)
T KOG1470|consen  138 LENAILFLPPGQEQFVWLFDLTGFSMS---NPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTA  214 (324)
T ss_pred             HHHHHHhCCCCcceEEEEEecccCccc---CCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhh
Confidence            999997666556889999999999999   56899999999999999999999999999999999999999999999998


Q ss_pred             cC
Q psy14122        167 KR  168 (168)
Q Consensus       167 ~R  168 (168)
                      ++
T Consensus       215 ~K  216 (324)
T KOG1470|consen  215 SK  216 (324)
T ss_pred             ce
Confidence            64

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.88  E-value=4.6e-23  Score=153.08  Aligned_cols=102  Identities=28%  Similarity=0.657  Sum_probs=84.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhc-CC-CeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEE
Q psy14122         67 GPWDPKVLSTDQILRVLYLIHLAAIRE-PE-SQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIV  144 (168)
Q Consensus        67 g~~dp~~~s~~~~~r~~~~~~E~~~~~-~~-~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iI  144 (168)
                      |++|++.++.+++.++.++.+|.++.. ++ .+++|+++|+|++|++++++...+++.++.+++++|++||+|++++|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ii  106 (159)
T PF00650_consen   27 GRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYII  106 (159)
T ss_dssp             TT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEE
Confidence            788999999999999999999999854 33 5799999999999999998865558999999999999999999999999


Q ss_pred             eCChhHHHHHHHHhhhhcHHhhcC
Q psy14122        145 KEPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       145 N~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      |+|++|+++|++++|||++++++|
T Consensus       107 n~p~~~~~~~~~~~~~l~~~~~~k  130 (159)
T PF00650_consen  107 NAPWFFRVLWKIVKPFLSPKTREK  130 (159)
T ss_dssp             S--TTHHHHHHHHGGGS-HHHHCT
T ss_pred             ecChhhhhhHhHHHhhcCHhhhee
Confidence            999999999999999999999987

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.83  E-value=2.4e-20  Score=138.28  Aligned_cols=99  Identities=27%  Similarity=0.585  Sum_probs=93.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhc--CCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEE
Q psy14122         67 GPWDPKVLSTDQILRVLYLIHLAAIRE--PESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIV  144 (168)
Q Consensus        67 g~~dp~~~s~~~~~r~~~~~~E~~~~~--~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iI  144 (168)
                      ++++++.++.++++++.++.+|.++.+  +..++.|+++|+|++|++++|   ++++.+|+++..++++||+|++++||+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~lk~~~~~~~~~yp~~l~~i~iv  104 (158)
T smart00516       28 GRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN---PDLSVLRKILKILQDHYPERLGKVLII  104 (158)
T ss_pred             cccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc---ccHHHHHHHHHHHHHHhHHHhCeEEEE
Confidence            678889999999999999999999976  667799999999999999997   578999999999999999999999999


Q ss_pred             eCChhHHHHHHHHhhhhcHHhhcC
Q psy14122        145 KEPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       145 N~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      |+|+++.++|++++||+++++++|
T Consensus       105 n~p~~~~~~~~~~~~~l~~~~~~k  128 (158)
T smart00516      105 NPPWFFRVLWKIIKPFLDEKTREK  128 (158)
T ss_pred             CCCHHHHHHHHHHHhhcChhhhcc
Confidence            999999999999999999999876

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.78  E-value=7.2e-19  Score=128.70  Aligned_cols=99  Identities=34%  Similarity=0.640  Sum_probs=89.9

Q ss_pred             CCCCC-CCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCC
Q psy14122         69 WDPKV-LSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEP  147 (168)
Q Consensus        69 ~dp~~-~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P  147 (168)
                      .++.. .+.++++++.++.+|.++.++..+..|+++|+|++|++++++. .+++.+++++++++++||+|++++|++|+|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p  109 (157)
T cd00170          31 KDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILKILQDNYPERLKAVYIINPP  109 (157)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-hhHHHHHHHHHHHHHhChHhhCeEEEECCC
Confidence            34443 3449999999999999998887777899999999999999887 688899999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhcHHhhcC
Q psy14122        148 IYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       148 ~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      ++|..+|+++++|+++++++|
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~k  130 (157)
T cd00170         110 WFFKVLWKIVKPFLSEKTRKK  130 (157)
T ss_pred             HhHHHHHHHHHHhcCHhhhhh
Confidence            999999999999999999876

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=97.98  E-value=1.4e-05  Score=58.72  Aligned_cols=84  Identities=19%  Similarity=0.328  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHH-HH
Q psy14122         78 QILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVW-RL  156 (168)
Q Consensus        78 ~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~-~i  156 (168)
                      |.-+...+++..+..+.  ...+.++|+|++|++..+  ..+.+.++++...+...|+..++++||+|+++++..++ .+
T Consensus        29 ~~~~ll~yl~~~l~~~~--~~~~f~vVid~~~~~~~~--~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~  104 (149)
T PF13716_consen   29 DLERLLLYLLSTLSEEV--VDKPFSVVIDHTGFSRSS--EPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATL  104 (149)
T ss_dssp             HHHHHHHHHHHHH-TTT--TTS-EEEEEE-TT--GGG-----HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHT
T ss_pred             hHHHHHHHHHHhhhHHh--cCCCEEEEEEcCCCcccc--CCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHH
Confidence            56666666666654432  236799999999998853  33577899999999999999999999999999999999 66


Q ss_pred             HhhhhcHHh
Q psy14122        157 FKPFIREKL  165 (168)
Q Consensus       157 vkpfL~~k~  165 (168)
                      .+++.+.+.
T Consensus       105 ~~~~~~~~~  113 (149)
T PF13716_consen  105 LRPFVSSKF  113 (149)
T ss_dssp             TTTGGGGTT
T ss_pred             hcccccccc
Confidence            677777765

>KOG4406|consensus

Probab=95.36  E-value=0.058  Score=46.34  Aligned_cols=81  Identities=16%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHh
Q psy14122         79 ILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFK  158 (168)
Q Consensus        79 ~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivk  158 (168)
                      ++++.++.+|..++++      ++.++=-.|+....-  -....+.....-+..+|---++.+|+|++-|+..++|+++|
T Consensus       115 li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~nk--p~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k  186 (467)
T KOG4406|consen  115 LISYLVYTIDKYVEND------YTLVYFHHGLPSDNK--PYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK  186 (467)
T ss_pred             HHHHHHHHHHHHHhcc------ceeeehhcCCccccc--chHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh
Confidence            8899999999988765      445544555544421  12333444444444458888999999999999999999999


Q ss_pred             hhhcHHhhc
Q psy14122        159 PFIREKLQK  167 (168)
Q Consensus       159 pfL~~k~~~  167 (168)
                      ||++.|-.+
T Consensus       187 plIS~KF~r  195 (467)
T KOG4406|consen  187 PLISLKFTR  195 (467)
T ss_pred             hhcchhhhc
Confidence            999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		4e-15
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		1e-14
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		6e-12
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		2e-10

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 59/100 (59%)
Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct: 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 181
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 182 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 221

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%)
Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+  
Sbjct: 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 165
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            + D+ PL+V+ +H++ EP+ F+ V+   KPF+ EK+++R
Sbjct: 166 VLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKER 205

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W  + ++ D+IL+    I    +   E+Q+ G  I+ +F G + +QA     +   K++ 
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVD 224
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD+ P R K +H + +P YF   + + KPF++ KL +R
Sbjct: 225 MLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 69  WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
           W  + ++ D+IL+    I    +   E+Q+ G  I+ +F G + +QA     +   K + 
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVD 224
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +QD+ P   K +H + +P YF   + + KPF++ KL +R
Sbjct: 225 XLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	1e-32
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	5e-32
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	1e-17
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	5e-06
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	7e-06

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  116 bits (292), Expect = 1e-32
 Identities = 33/102 (32%), Positives = 59/102 (57%)

Query: 67  GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKL 126
             WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+
Sbjct: 104 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 163

Query: 127 LTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 164 AAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 205

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  115 bits (290), Expect = 5e-32
 Identities = 28/102 (27%), Positives = 53/102 (51%)

Query: 67  GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKL 126
             W  + ++ D+IL+    I    +   E+Q+ G  I+ +F G + +QA     +   K+
Sbjct: 163 ENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKM 222

Query: 127 LTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
           +  +QD+ P   K +H + +P YF   + + KPF++ KL +R
Sbjct: 223 VDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score = 77.7 bits (191), Expect = 1e-17
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 67  GPWDPKVL----STDQILRVLYLIHLAAIREPESQ-------VRGGVIVLDFDGLSTKQA 115
           GP D K L    S   +LR         ++E   Q       V    I+ D +GL  K  
Sbjct: 104 GPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHL 163

Query: 116 LQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +       + L   ++  P  +K + +VK P  F + + L KPF+ E  +K+
Sbjct: 164 WKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 216

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 67  GPWDPKVL-----STDQILRVLYLI-HLAAIREPESQVRGG------VIVLDFDGLSTKQ 114
           G  + K +         +  ++      A  R P    R G        VLD  G+S   
Sbjct: 139 GGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN 198

Query: 115 ALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREK 164
           A          +    Q+  P R+ + +I+  P  F+ ++++ KPF+   
Sbjct: 199 AYHVLSYIK-DVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPV 247

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 67  GPWDPKVL-----STDQILRVLYLI-HLAAIREPESQVRGG------VIVLDFDGLSTKQ 114
           G  +   +         +  +++    +   R P      G        ++D  G+S   
Sbjct: 124 GAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183

Query: 115 ALQFTPTFSY--KLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREK 164
                   SY  +     Q+  P R+ + +I+  P  F+  +RLFKPF+   
Sbjct: 184 ---AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPV 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.95
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.92
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.92
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.9
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	97.4
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	97.34

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=3.4e-33  Score=229.65  Aligned_cols=144  Identities=27%  Similarity=0.520  Sum_probs=112.7

Q ss_pred             CCC-ceeeccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH------------------c------------------
Q psy14122         24 ADP-RFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQML------------------K------------------   66 (168)
Q Consensus        24 ~~~-~~~~~~~~l~~~~~~~A~~~L~E~~~~R~~~~~~lr~~i------------------~------------------   66 (168)
                      ++| +|+... +|||+.+++|++||+|+++.|+++|++||+||                  .                  
T Consensus        28 ~~~~~~~~~~-~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv  106 (316)
T 3hx3_A           28 DHGPVFGPCS-QLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNV  106 (316)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCH
T ss_pred             cCCccccCCC-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCH
Confidence            555 677666 89999999999999999999999999999998                  1                  


Q ss_pred             --------------------------------------------------------CCCCCCCCCHHHHHHHHHHHHHHH
Q psy14122         67 --------------------------------------------------------GPWDPKVLSTDQILRVLYLIHLAA   90 (168)
Q Consensus        67 --------------------------------------------------------g~~dp~~~s~~~~~r~~~~~~E~~   90 (168)
                                                                              |++||++++.++++|+.++++|.+
T Consensus       107 ~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~  186 (316)
T 3hx3_A          107 GRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKL  186 (316)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHH
Confidence                                                                    899999999999999999999999


Q ss_pred             HhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHhhcC
Q psy14122         91 IREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus        91 ~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      +.++..+++|+++|+|++|+|++|+++++++.+|+++.++|++||+|++++||||+|++|+++|+++||||+++|++|
T Consensus       187 l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~K  264 (316)
T 3hx3_A          187 LENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER  264 (316)
T ss_dssp             TTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTT
T ss_pred             HhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhh
Confidence            987777899999999999999999988999999999999999999999999999999999999999999999999986

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.95  E-value=2.7e-28  Score=194.20  Aligned_cols=133  Identities=29%  Similarity=0.547  Sum_probs=119.3

Q ss_pred             CHHHHHHHHHHhcCCHHHHHHHHH--------HHHHHHc----------------------CCCCCCCCCHHHHHHHHHH
Q psy14122         36 SEESKKVAEVELRETPERVQESLR--------QLKQMLK----------------------GPWDPKVLSTDQILRVLYL   85 (168)
Q Consensus        36 ~~~~~~~A~~~L~E~~~~R~~~~~--------~lr~~i~----------------------g~~dp~~~s~~~~~r~~~~   85 (168)
                      ..+++++|.++|.++.+||++.-+        ++.+.+.                      |++||+.++..+++|+.++
T Consensus        43 ~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~  122 (262)
T 1r5l_A           43 RDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI  122 (262)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHH
Confidence            557899999999999999998611        1111111                      7799999999999999999


Q ss_pred             HHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHh
Q psy14122         86 IHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKL  165 (168)
Q Consensus        86 ~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~  165 (168)
                      ++|.++.+++.++.|+++|+|++|+|++|+++++++.++.++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus       123 ~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t  202 (262)
T 1r5l_A          123 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI  202 (262)
T ss_dssp             HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHH
T ss_pred             HHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHH
Confidence            99999888777889999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy14122        166 QKR  168 (168)
Q Consensus       166 ~~R  168 (168)
                      ++|
T Consensus       203 ~~K  205 (262)
T 1r5l_A          203 KER  205 (262)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            986

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.92  E-value=5.2e-26  Score=184.57  Aligned_cols=132  Identities=17%  Similarity=0.288  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHhcCCHHHHHHH-HHHH-HHH-------Hc----------------------CCCCCCC----CCHHHHH
Q psy14122         36 SEESKKVAEVELRETPERVQES-LRQL-KQM-------LK----------------------GPWDPKV----LSTDQIL   80 (168)
Q Consensus        36 ~~~~~~~A~~~L~E~~~~R~~~-~~~l-r~~-------i~----------------------g~~dp~~----~s~~~~~   80 (168)
                      ..+++++|.++|.++.+||++. ++.+ .++       +.                      |++|+++    .+.++++
T Consensus        62 rkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~  141 (296)
T 1aua_A           62 RKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERML  141 (296)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHH
Confidence            4578999999999999999987 1111 111       11                      6677753    6899999


Q ss_pred             HHHHHHHHHHHhc--------CCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHH
Q psy14122         81 RVLYLIHLAAIRE--------PESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNL  152 (168)
Q Consensus        81 r~~~~~~E~~~~~--------~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~  152 (168)
                      ++.++.+|.++..        .+.+++|+++|+|++|+|++|+.++ ++.+|.++.++|++||+|++++||||+|++|++
T Consensus       142 ~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~  220 (296)
T 1aua_A          142 KNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFST  220 (296)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHH
Confidence            9999999987753        2335789999999999999998766 889999999999999999999999999999999


Q ss_pred             HHHHHhhhhcHHhhcC
Q psy14122        153 VWRLFKPFIREKLQKR  168 (168)
Q Consensus       153 i~~ivkpfL~~k~~~R  168 (168)
                      +|+++||||+++|++|
T Consensus       221 ~~~iikpfl~~~t~~K  236 (296)
T 1aua_A          221 AFRLFKPFLDPVTVSK  236 (296)
T ss_dssp             HHHHHGGGSCHHHHTT
T ss_pred             HHHHHHhhcCHhhcce
Confidence            9999999999999986

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.92  E-value=3.6e-26  Score=192.84  Aligned_cols=133  Identities=25%  Similarity=0.369  Sum_probs=116.3

Q ss_pred             CHHHHHHHHHHhcCCHHHHHHH-HH---------HHHHHHc------------------CCCCCC----CCCHHHHHHHH
Q psy14122         36 SEESKKVAEVELRETPERVQES-LR---------QLKQMLK------------------GPWDPK----VLSTDQILRVL   83 (168)
Q Consensus        36 ~~~~~~~A~~~L~E~~~~R~~~-~~---------~lr~~i~------------------g~~dp~----~~s~~~~~r~~   83 (168)
                      ..+++++|.++|.++.+||++. ++         .++....                  |++|++    .++.++++|+.
T Consensus        45 rkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~  124 (403)
T 1olm_A           45 RSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK  124 (403)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHH
Confidence            5578999999999999999975 11         2333322                  888987    58999999999


Q ss_pred             HHHHHHHHhcCCC-------eeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHH
Q psy14122         84 YLIHLAAIREPES-------QVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRL  156 (168)
Q Consensus        84 ~~~~E~~~~~~~~-------qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~i  156 (168)
                      ++++|.++.+...       .+.|+++|+|++|+|++|+++..++.++.++.++|++||+|++++||||+|++|+++|++
T Consensus       125 ~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~  204 (403)
T 1olm_A          125 MRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNL  204 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHH
Confidence            9999999876443       379999999999999999877678889999999999999999999999999999999999


Q ss_pred             HhhhhcHHhhcC
Q psy14122        157 FKPFIREKLQKR  168 (168)
Q Consensus       157 vkpfL~~k~~~R  168 (168)
                      +||||+++|++|
T Consensus       205 ikpfl~~~t~~K  216 (403)
T 1olm_A          205 IKPFLSEDTRKK  216 (403)
T ss_dssp             HGGGSCHHHHHT
T ss_pred             HHhhcCHhhhce
Confidence            999999999986

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.90  E-value=2.9e-24  Score=176.77  Aligned_cols=133  Identities=19%  Similarity=0.231  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHH-HHH-HH--------------HHc---------------------CCCCCCC----
Q psy14122         35 LSEESKKVAEVELRETPERVQESL-RQL-KQ--------------MLK---------------------GPWDPKV----   73 (168)
Q Consensus        35 l~~~~~~~A~~~L~E~~~~R~~~~-~~l-r~--------------~i~---------------------g~~dp~~----   73 (168)
                      ...+++++|.++|.++.+||++.- +.+ .+              ...                     |++|+++    
T Consensus        70 Arkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~  149 (320)
T 3q8g_A           70 ARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKI  149 (320)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhcc
Confidence            355789999999999999999861 111 11              111                     7788875    


Q ss_pred             CCHHHHHHHHHHHHHHHHhcC--------CCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEe
Q psy14122         74 LSTDQILRVLYLIHLAAIREP--------ESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVK  145 (168)
Q Consensus        74 ~s~~~~~r~~~~~~E~~~~~~--------~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN  145 (168)
                      .+.++++|+.++.+|.++...        +..+.+.++|+|++|+|++|+.++ ++.+|.++.++|++||+|++++||||
T Consensus       150 ~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN  228 (320)
T 3q8g_A          150 TTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIH  228 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEEC
Confidence            488999999999999887431        122567899999999999998765 78899999999999999999999999


Q ss_pred             CChhHHHHHHHHhhhhcHHhhcC
Q psy14122        146 EPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       146 ~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      +|++|+++|+++||||+++|++|
T Consensus       229 ~P~~f~~~~~~ikpfl~~~t~~K  251 (320)
T 3q8g_A          229 SPFGFSTMFKMVKPFLDPVTVSK  251 (320)
T ss_dssp             CCTTHHHHHTTTGGGSCHHHHHT
T ss_pred             CCHHHHHHHHHHHHhCCHHHhhh
Confidence            99999999999999999999986

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=97.40  E-value=0.00018  Score=56.94  Aligned_cols=90  Identities=13%  Similarity=0.082  Sum_probs=68.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeC
Q psy14122         67 GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKE  146 (168)
Q Consensus        67 g~~dp~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~  146 (168)
                      ++++++..+.+.++.+.+..+|....      ....+|+|++|++..+  ..+.+.++++.+++...|...++++||+|+
T Consensus        31 ~~l~~~~~D~e~Ll~~vl~tl~~~~~------~~y~lV~d~T~~~~~n--~p~~~wl~~~~~llp~~~~kNlk~~Yivnp  102 (256)
T 3pg7_A           31 RRFKTGQINGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSN--RFKTDFLSKWFVVFPGFAYDNVSAVYIYNC  102 (256)
T ss_dssp             GGCCBTTBCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGG--CCCHHHHHHTTTSSCHHHHHTEEEEEEESC
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEECCCCCccc--CCcHHHHHHHHHHcCHHHHhcccEEEEECC
Confidence            44566667777777766666654332      4688999999999875  446788999999999999999999999999


Q ss_pred             ChhHHHHHHH-HhhhhcHH
Q psy14122        147 PIYFNLVWRL-FKPFIREK  164 (168)
Q Consensus       147 P~~f~~i~~i-vkpfL~~k  164 (168)
                      +++|...+.. .++|.+.+
T Consensus       103 t~~~k~~~~~~~~~~~~~k  121 (256)
T 3pg7_A          103 NSWVREYTKYHERLLTGLK  121 (256)
T ss_dssp             CHHHHHHHHHTHHHHTTTT
T ss_pred             CHHHHHHHHHHhccccccc
Confidence            9999976655 45555434

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	5e-23
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	7e-13
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	4e-10

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 5e-23
 Identities = 33/102 (32%), Positives = 59/102 (57%)

Query: 67  GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKL 126
             WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+
Sbjct: 30  AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 89

Query: 127 LTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 90  AAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 131

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 7e-13
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 67  GPWDPKVL----STDQILRVLYLIH-------LAAIREPESQVRGGVIVLDFDGLSTKQA 115
           GP D K L    S   +LR                  +   +V    I+ D +GL  K  
Sbjct: 29  GPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHL 88

Query: 116 LQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +       + L   ++  P  +K + +VK P  F + + L KPF+ E  +K+
Sbjct: 89  WKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 141

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (129), Expect = 4e-10
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 81  RVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKE 140
            V+     A  R     V     ++D  G+S   A      +  +     Q+  P R+ +
Sbjct: 57  SVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMS-YVREASYISQNYYPERMGK 115

Query: 141 VHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +I+  P  F+  +RLFKPF+      +
Sbjct: 116 FYIINAPFGFSTAFRLFKPFLDPVTVSK 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.93
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.87
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.81
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	87.7

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.9e-27  Score=177.10  Aligned_cols=102  Identities=32%  Similarity=0.698  Sum_probs=99.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeC
Q psy14122         67 GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKE  146 (168)
Q Consensus        67 g~~dp~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~  146 (168)
                      |++||+.++..+++|+.++++|.++.+++.|++|+++|+|++|+|++|+++++++.++++++++|++||+|++++|+||+
T Consensus        30 ~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~~~~~~~~q~~yP~rl~~i~ivn~  109 (185)
T d1r5la2          30 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE  109 (185)
T ss_dssp             GGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhccHHHHHHHHHHHHhhCchhhheeEEEcC
Confidence            78999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHhhhhcHHhhcC
Q psy14122        147 PIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       147 P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      |++|.++|+++||||++|+++|
T Consensus       110 P~~~~~~~~~vk~fl~~k~~~K  131 (185)
T d1r5la2         110 PVIFHAVFSMIKPFLTEKIKER  131 (185)
T ss_dssp             CGGGHHHHHHHGGGSCHHHHTT
T ss_pred             CHHHHHHHHHHHHhccHHHHhh
Confidence            9999999999999999999987

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.2e-23  Score=156.24  Aligned_cols=102  Identities=26%  Similarity=0.417  Sum_probs=92.6

Q ss_pred             CCCCCC----CCCHHHHHHHHHHHHHHHHhcC-------CCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccc
Q psy14122         67 GPWDPK----VLSTDQILRVLYLIHLAAIREP-------ESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALP  135 (168)
Q Consensus        67 g~~dp~----~~s~~~~~r~~~~~~E~~~~~~-------~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP  135 (168)
                      |++|++    ..+.++++++.++.+|.++...       ..+++|+++|+|++|+|++|+++..++.+++++.++|++||
T Consensus        29 g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~~~~~~l~~~~~~~q~~YP  108 (199)
T d1olma3          29 GPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYP  108 (199)
T ss_dssp             TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHST
T ss_pred             ccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhccccHHHHHHHHHHHHHHHH
Confidence            778875    5689999999999999987532       23478999999999999999988778999999999999999


Q ss_pred             eeeeeEEEEeCChhHHHHHHHHhhhhcHHhhcC
Q psy14122        136 LRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       136 ~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      +|++++||||+|++|.++|+++||||+++|++|
T Consensus       109 erl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~K  141 (199)
T d1olma3         109 ETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK  141 (199)
T ss_dssp             TCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHT
T ss_pred             HhhhheEEECCCHHHHHHHHHHHHhcCHHhhcc
Confidence            999999999999999999999999999999986

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.6e-20  Score=142.77  Aligned_cols=101  Identities=22%  Similarity=0.365  Sum_probs=88.4

Q ss_pred             CCCCCC----CCCHHHHHHHHHHHHHHHHhc--------CCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhcc
Q psy14122         67 GPWDPK----VLSTDQILRVLYLIHLAAIRE--------PESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDAL  134 (168)
Q Consensus        67 g~~dp~----~~s~~~~~r~~~~~~E~~~~~--------~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~y  134 (168)
                      |++|++    ..+.++++++.++.+|.+++.        ....++++++|+|++|+|+++++.. .+.++.++.++|++|
T Consensus        31 g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s~~~~~~~-~~~~k~~~~~~q~~y  109 (203)
T d1auaa2          31 GAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYY  109 (203)
T ss_dssp             GGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred             CCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCChHHhhhH-HHHHHHHHHHHHHhC
Confidence            556664    468999999999999998753        2344789999999999999988643 567899999999999


Q ss_pred             ceeeeeEEEEeCChhHHHHHHHHhhhhcHHhhcC
Q psy14122        135 PLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR  168 (168)
Q Consensus       135 P~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~~R  168 (168)
                      |+|++++||||+|++|.++|+++||||+++|++|
T Consensus       110 Pe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~K  143 (203)
T d1auaa2         110 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSK  143 (203)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTT
T ss_pred             hHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhc
Confidence            9999999999999999999999999999999987

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.036  Score=33.71  Aligned_cols=29  Identities=14%  Similarity=0.181  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy14122         35 LSEESKKVAEVELRETPERVQESLRQLKQML   65 (168)
Q Consensus        35 l~~~~~~~A~~~L~E~~~~R~~~~~~lr~~i   65 (168)
                      ..++++++|.++|.++.+||++.  .+++++
T Consensus        44 Ar~fdv~kA~~ml~~~l~WR~~~--~vD~Il   72 (75)
T d1olma1          44 ARSFDLQKSEAMLRKHVEFRKQK--DIDNII   72 (75)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHT--TGGGGG
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHc--Cchhhh
Confidence            46789999999999999999998  555543