Psyllid ID: psy14126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHccEEEEcccHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccHHccHHcccccccccccccccHHHHHHHHccEEEEccccHHHHHHHccHHHccHHcccccccccccccccc
Coil and Loop (DISEMBL)
msslhkyihpdtlpadyggnkpkinyssaqwypvlDEIEDSIMYFHgnkmsslhkyihpdtlpadyggnkpkinyssaqwy
Flexible Loop (DISEMBL)
msslhkyihpdtlpadyggNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Low Complexity Region (SEG)
MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Disordered region (IsUnstruct)
***************DYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLP******************
Disordered Region (DISOPRED)
*******IHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Disordered Region (DISEMBL)
MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Disordered Region (DISPRO)
*SSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q5M7E1	332	Clavesin-1 OS=Xenopus lae	N/A	N/A	0.790	0.192	0.329	1e-06
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.790	0.195	0.341	1e-06
Q5SYC1	327	Clavesin-2 OS=Homo sapien	yes	N/A	0.790	0.195	0.341	1e-06
Q8BG92	327	Clavesin-2 OS=Mus musculu	yes	N/A	0.790	0.195	0.341	2e-06
A6JUQ6	327	Clavesin-2 OS=Rattus norv	yes	N/A	0.703	0.174	0.357	2e-06
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	no	N/A	0.703	0.161	0.328	7e-06
Q8IUQ0	354	Clavesin-1 OS=Homo sapien	no	N/A	0.703	0.161	0.328	7e-06
A6JFQ6	354	Clavesin-1 OS=Rattus norv	yes	N/A	0.703	0.161	0.328	7e-06
Q9D4C9	354	Clavesin-1 OS=Mus musculu	no	N/A	0.703	0.161	0.328	7e-06
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.790	0.194	0.316	0.0001

>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 15/79 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHPD 
Sbjct: 189 DSFPARFGG----VHFVNQPWYIHALYTIIKPFLKDKTRKRIFLHGNNLNSLHQLIHPDC 244

Query: 62  LPADYGGNKPKINYSSAQW 80
           LP+++GG  P   Y    W
Sbjct: 245 LPSEFGGTLPP--YDMGTW 261

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Xenopus laevis (taxid: 8355)

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query: 62  LPADYGGNKPKINYSSAQW 80
           LP+++GG  P   Y    W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query: 62  LPADYGGNKPKINYSSAQW 80
           LP+++GG  P   Y    W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query: 62  LPADYGGNKPKINYSSAQW 80
           LP+++GG  P   Y    W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query: 62  LPADYGGNKP 71
           LP+++GG  P
Sbjct: 245 LPSEFGGMLP 254

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHP+ 
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266

Query: 62  LPADYGGNKP 71
           LP+++GG  P
Sbjct: 267 LPSEFGGTLP 276

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHP+ 
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266

Query: 62  LPADYGGNKP 71
           LP+++GG  P
Sbjct: 267 LPSEFGGTLP 276

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHP+ 
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266

Query: 62  LPADYGGNKP 71
           LP+++GG  P
Sbjct: 267 LPSEFGGTLP 276

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHP+ 
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266

Query: 62  LPADYGGNKP 71
           LP+++GG  P
Sbjct: 267 LPSEFGGTLP 276

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 15/79 (18%)

Query: 11  DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
           D+ PA +GG    I++ +  WY         P L +     ++ HGN ++SLH+ I P+ 
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKDKTRKRIFMHGNNLNSLHQLILPEI 244

Query: 62  LPADYGGNKPKINYSSAQW 80
           LP++ GG  P   Y    W
Sbjct: 245 LPSELGGMLPP--YDMGTW 261

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
118780290	118	AGAP009382-PA [Anopheles gambiae str. PE	1.0	0.686	0.456	9e-16
328706193	317	PREDICTED: clavesin-1-like [Acyrthosipho	0.481	0.123	0.666	1e-09
242006599	287	conserved hypothetical protein [Pediculu	0.604	0.170	0.551	5e-09
66519875	288	PREDICTED: clavesin-2-like [Apis mellife	0.604	0.170	0.571	5e-09
91083015	288	PREDICTED: similar to CRALBP [Tribolium	0.604	0.170	0.551	2e-08
383864671	287	PREDICTED: clavesin-1-like [Megachile ro	0.604	0.170	0.571	2e-08
158288192	292	AGAP009385-PA [Anopheles gambiae str. PE	0.703	0.195	0.473	3e-08
350401207	287	PREDICTED: clavesin-1-like [Bombus impat	0.604	0.170	0.551	4e-08
242016027	289	conserved hypothetical protein [Pediculu	0.604	0.169	0.489	2e-07
340720600	287	PREDICTED: clavesin-1-like [Bombus terre	0.481	0.135	0.641	4e-07

>gi|118780290|ref|XP_559859.2| AGAP009382-PA [Anopheles gambiae str. PEST] gi|116131207|gb|EAL41408.2| AGAP009382-PA [Anopheles gambiae str. PEST]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 11/92 (11%)

Query: 1  MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSI-----------MYFHGNK 49
          M  LHK+I P  LPA+YGG++P INY   +WYP +    D I           ++FHGN 
Sbjct: 3  MRKLHKHIDPSDLPANYGGDRPPINYGGREWYPCVYNYIDHINQWNTFGFLPNIFFHGND 62

Query: 50 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
          ++  H+YI  D LPADYGGN P I+Y+   WY
Sbjct: 63 LNKFHQYISVDRLPADYGGNLPAIDYTGKDWY 94

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706193|ref|XP_001946617.2| PREDICTED: clavesin-1-like [Acyrthosiphon pisum]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 43  MYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           ++FHGNKMSSLHK++  + LP DYGG KPK+NY+SA WY
Sbjct: 259 LFFHGNKMSSLHKHLDANMLPEDYGGKKPKLNYTSADWY 297

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006599|ref|XP_002424137.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507454|gb|EEB11399.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P++ E  ++ +YFHGN MSSLHKYI+P+ LP +Y G+ P  NYSS  WY
Sbjct: 218 PIIREKLNNRLYFHGNDMSSLHKYINPNCLPEEYEGSLPPTNYSSKDWY 266

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66519875|ref|XP_624823.1| PREDICTED: clavesin-2-like [Apis mellifera]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P + E   S ++FHGNKMSS H +I P  LP +YGG  PKI+YSSA+WY
Sbjct: 217 PFIREKLKSRIFFHGNKMSSFHNHIPPAYLPENYGGELPKIDYSSAEWY 265

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083015|ref|XP_974607.1| PREDICTED: similar to CRALBP [Tribolium castaneum] gi|270007020|gb|EFA03468.1| hypothetical protein TcasGA2_TC013464 [Tribolium castaneum]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P + E   + ++FHG+KMSSLHKYI P  LP DY G  PKI+Y+ A WY
Sbjct: 219 PFIKEKLKNRIFFHGSKMSSLHKYIEPSHLPKDYDGTMPKIDYTGADWY 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864671|ref|XP_003707801.1| PREDICTED: clavesin-1-like [Megachile rotundata]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 38/49 (77%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P++ E   S M+FHG+KMSSLH++I P  LP +YGGN P+I+Y+SA WY
Sbjct: 217 PLVKEKLKSRMFFHGSKMSSLHQHIPPSHLPKNYGGNLPEIDYTSANWY 265

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288192|ref|XP_559860.3| AGAP009385-PA [Anopheles gambiae str. PEST] gi|157019261|gb|EAL41409.3| AGAP009385-PA [Anopheles gambiae str. PEST]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query: 25  NYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           N   A + P + E   S ++FHGN +S  H+YI  D LPADYGGN P I+Y+   WY
Sbjct: 212 NMVWALFKPFIREKLKSRIFFHGNDLSKFHQYISVDRLPADYGGNLPAIDYTGKDWY 268

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401207|ref|XP_003486083.1| PREDICTED: clavesin-1-like [Bombus impatiens]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P + E     M+FHGNKMSSLH YI    +P +YGGN P+I+Y+SA WY
Sbjct: 217 PFVKEKLKKRMFFHGNKMSSLHAYIPVSHIPKNYGGNLPEIDYTSADWY 265

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016027|ref|XP_002428640.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513303|gb|EEB15902.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P++ E  +  ++FHGNK+  LHK+I  D LP DYGG+ PK++YS+  WY
Sbjct: 219 PLVKEKLNKRLHFHGNKLQELHKFIPRDYLPEDYGGSLPKVDYSAKDWY 267

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720600|ref|XP_003398722.1| PREDICTED: clavesin-1-like [Bombus terrestris]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 43  MYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           M+FHGNKMSSLH YI    +P +YGGN P+I+Y+SA WY
Sbjct: 227 MFFHGNKMSSLHAYIPVSHIPKNYGGNLPEIDYTSANWY 265

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
UNIPROTKB|Q5M7E1	332	clvs1 "Clavesin-1" [Xenopus la	0.790	0.192	0.329	2.6e-08
FB|FBgn0032783	324	CG10237 [Drosophila melanogast	0.765	0.191	0.444	8.8e-07
UNIPROTKB|E1C6S0	327	CLVS2 "Uncharacterized protein	0.790	0.195	0.341	1.2e-06
UNIPROTKB|E1BHP4	327	CLVS2 "Uncharacterized protein	0.790	0.195	0.341	1.2e-06
UNIPROTKB|F1PL15	327	CLVS2 "Uncharacterized protein	0.790	0.195	0.341	1.2e-06
UNIPROTKB|Q5SYC1	327	CLVS2 "Clavesin-2" [Homo sapie	0.790	0.195	0.341	1.2e-06
UNIPROTKB|F1S2T8	327	CLVS2 "Uncharacterized protein	0.790	0.195	0.341	1.2e-06
UNIPROTKB|Q95KF7	327	CLVS2 "Clavesin-2" [Macaca fas	0.790	0.195	0.341	1.2e-06
MGI|MGI:2443223	327	Clvs2 "clavesin 2" [Mus muscul	0.790	0.195	0.341	1.2e-06
RGD|1306801	327	Clvs2 "clavesin 2" [Rattus nor	0.790	0.195	0.341	1.2e-06

UNIPROTKB|Q5M7E1 clvs1 "Clavesin-1" [Xenopus laevis (taxid:8355)]

 Score = 120 (47.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    +++ +  WY         P L +     ++ HGN ++SLH+ IHPD 
Sbjct:   189 DSFPARFGG----VHFVNQPWYIHALYTIIKPFLKDKTRKRIFLHGNNLNSLHQLIHPDC 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGTLPP--YDMGTW 261

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

FB|FBgn0032783 CG10237 [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 28/63 (44%), Positives = 33/63 (52%)

Query:    20 NKPKI-NYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSA 78
             N+PKI     A + P L E   S + FHG    SLHKY+ P  LPA YGG +      S 
Sbjct:   241 NQPKIFQVVFALFKPFLKEKLRSRIIFHGTDRESLHKYMSPKCLPAAYGGFREASRIDSD 300

Query:    79 QWY 81
             QWY
Sbjct:   301 QWY 303

GO:0016918 "retinal binding" evidence=ISS

GO:0008431 "vitamin E binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1C6S0 CLVS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

UNIPROTKB|E1BHP4 CLVS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1PL15 CLVS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5SYC1 CLVS2 "Clavesin-2" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|F1S2T8 CLVS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q95KF7 CLVS2 "Clavesin-2" [Macaca fascicularis (taxid:9541)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

MGI|MGI:2443223 Clvs2 "clavesin 2" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO

RGD|1306801 Clvs2 "clavesin 2" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
             D+ PA +GG    I++ +  WY         P L E     ++ HGN ++SLH+ IHP+ 
Sbjct:   189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244

Query:    62 LPADYGGNKPKINYSSAQW 80
             LP+++GG  P   Y    W
Sbjct:   245 LPSEFGGMLPP--YDMGTW 261

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007040 "lysosome organization" evidence=IMP

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	7e-05
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	0.004

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 32  YPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
            P L E     + F G+    L KYI  + LP +YGG 
Sbjct: 120 KPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 32  YPVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGN 69
            P LD      ++FH N  +  L KYI P+ LP +YGG 
Sbjct: 114 KPFLDPKTREKIHFHKNSNLEELLKYIPPEQLPKEYGGT 152

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG1471|consensus	317		99.54
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.38
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.33
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.25
KOG1470|consensus	324		98.8
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	94.94
KOG1471|consensus	317		92.87

>KOG1471|consensus

Probab=99.54  E-value=6.4e-16  Score=106.87  Aligned_cols=67  Identities=31%  Similarity=0.481  Sum_probs=61.4

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEE-EcCCChHHHhhhCCCCCCCCcCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMY-FHGNKMSSLHKYIHPDTLPADYGGNKPKI   73 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~-~~~~~~~~l~~~i~~~~LP~e~GG~~~~~   73 (81)
                      .+.++++|.+++.    |+|+ +..+++++++||++++++||+ +|+.+.++|+++||+++||++|||+++..
T Consensus       188 ~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  188 KILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             HHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCCcccc
Confidence            3567999999999    9999 588999999999999999999 66667789999999999999999999986

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.38  E-value=3.4e-14  Score=88.81  Aligned_cols=62  Identities=29%  Similarity=0.544  Sum_probs=53.0

Q ss_pred             cCCCcccccccC----CCCCc-cchHHHHHHHHHhccCceEEEcC-CCh-HHHhhhCCCCCCCCcCCCC
Q psy14126          8 IHPDTLPADYGG----NKPKI-NYSSAQWYPVLDEIEDSIMYFHG-NKM-SSLHKYIHPDTLPADYGGN   69 (81)
Q Consensus         8 i~~~~lP~r~gg----n~p~~-~~~~~~~k~fL~~k~~~ri~~~~-~~~-~~l~~~i~~~~LP~e~GG~   69 (81)
                      +.++++|.|.+.    |+|++ ..+++++++||++++++||++++ .++ ++|.++||++.||.+|||+
T Consensus        91 ~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~GG~  159 (159)
T PF00650_consen   91 LLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEYGGT  159 (159)
T ss_dssp             HHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGGTSS
T ss_pred             hhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhcCCC
Confidence            457889999999    99995 88999999999999999999996 355 5899999999999999996

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.33  E-value=3.7e-13  Score=82.74  Aligned_cols=63  Identities=30%  Similarity=0.464  Sum_probs=56.9

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCChHHHhhhCCCCCCCCcCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN   69 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~   69 (81)
                      .+.++++|.+++.    |+|. +..+++++++|+++++++||++++++.++|.++||++.||.+|||+
T Consensus        90 ~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~~~GG~  157 (157)
T cd00170          90 KILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT  157 (157)
T ss_pred             HHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcHhhCCC
Confidence            4568899999999    8998 5778999999999999999999963388999999999999999996

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>smart00516 SEC14 Domain in homologues of a S

Probab=99.25  E-value=1.5e-12  Score=81.29  Aligned_cols=64  Identities=33%  Similarity=0.505  Sum_probs=56.7

Q ss_pred             cCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCC-ChHHHhhhCCCCCCCCcCCCCCC
Q psy14126          8 IHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGN-KMSSLHKYIHPDTLPADYGGNKP   71 (81)
Q Consensus         8 i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~-~~~~l~~~i~~~~LP~e~GG~~~   71 (81)
                      +.++.+|.+++.    |+|. +..+++++++||+++++.||+++++ +.++|.++||++.||++|||+..
T Consensus        89 ~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~GG~~~  158 (158)
T smart00516       89 ILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEELGGTLD  158 (158)
T ss_pred             HHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhhCCCCC
Confidence            446889999998    8998 4778999999999999999999974 26789999999999999999863

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>KOG1470|consensus

Probab=98.80  E-value=8.6e-10  Score=77.62  Aligned_cols=63  Identities=27%  Similarity=0.364  Sum_probs=57.2

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCChHHHhhhCCCCCCCCcCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNK   70 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~~   70 (81)
                      ++.|+++|.|+|.    |+|+ |+.+++++++||+++++++|.|. .+.+.+.++||++.||.+|||+.
T Consensus       176 ~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~-~~~~~l~~~~d~~~l~s~~GG~~  243 (324)
T KOG1470|consen  176 HILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFV-EPKDDLSEYFDESQLPSLFGGKL  243 (324)
T ss_pred             HHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEe-cChhHHHhhCCccccchhhCCCc
Confidence            5779999999998    8999 58899999999999999999998 46777999999999999999954

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=94.94  E-value=0.0015  Score=40.53  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             HHHHHhcc-CceEEEcCCChHHHhhhCCCCCCCCcCCCCCC
Q psy14126         32 YPVLDEIE-DSIMYFHGNKMSSLHKYIHPDTLPADYGGNKP   71 (81)
Q Consensus        32 k~fL~~k~-~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~~~   71 (81)
                      +.+.+.+. ..+|++. ++.++|.++||++.||++.||...
T Consensus       106 ~~~~~~~~~~~kv~~~-~sl~~L~~~i~~~qL~~~lp~~~~  145 (149)
T PF13716_consen  106 RPFVSSKFWKKKVVYV-SSLSELSKHIDPSQLPESLPGVLQ  145 (149)
T ss_dssp             TTGGGGTT--TTEEEE-SSTCGGGGTSGGGG------HHH-
T ss_pred             cccccccccceEEEEE-CCHHHHHhhCCHHHhcccCCCEEe
Confidence            34446676 6777766 489999999999999999997654

>KOG1471|consensus

Probab=92.87  E-value=0.044  Score=37.95  Aligned_cols=23  Identities=48%  Similarity=0.918  Sum_probs=20.5

Q ss_pred             hhhhhhcCCCcccccccCCCCCc
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPKI   24 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~~   24 (81)
                      ++|+++|++++||.+|||+++..
T Consensus       238 ~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  238 ESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             hhhhhhCCHhhCccccCCCcccc
Confidence            68999999999999999977664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	4e-09
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	4e-05
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	5e-08
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	2e-06

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 32  YPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINY 75
            P L       ++ HG+ +S  ++ I  + LP+D+GG  PK + 
Sbjct: 254 KPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDG 297

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINY 26
           +S  ++ I  + LP+D+GG  PK + 
Sbjct: 272 LSGFYQEIDENILPSDFGGTLPKYDG 297

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score = 46.9 bits (112), Expect = 5e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P L E     ++ HGN          PD LP +YGG +  +     +W 
Sbjct: 196 PFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWT 244

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIH 58
                    PD LP +YGG +  +     +W   + + ED   Y      SS+ + I 
Sbjct: 213 YKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSED---YL-----SSISESIQ 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	99.64
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.63
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.53
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.5
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.48
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	96.1
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	94.27
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	92.01
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	90.53
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	89.27

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=99.64  E-value=5.6e-18  Score=116.77  Aligned_cols=72  Identities=24%  Similarity=0.443  Sum_probs=65.0

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCChHHHhhhCCCCCCCCcCCCCCCCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW   80 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~~~~~~~~~~~w   80 (81)
                      .+.++++|.|+++    |+|+ +..+++++++||++++++||+|||+++++|+++||+++||++|||+++  .++++.|
T Consensus       224 ~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~--~~d~~~~  300 (316)
T 3hx3_A          224 DMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLP--KYDGKAV  300 (316)
T ss_dssp             HHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSBC--CCCHHHH
T ss_pred             HHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCCC--CcChhHH
Confidence            3568999999999    9999 488999999999999999999998789999999999999999999998  4556666

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.63  E-value=6e-18  Score=112.69  Aligned_cols=72  Identities=28%  Similarity=0.495  Sum_probs=64.4

Q ss_pred             cCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCCCCCCC
Q psy14126          8 IHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINYSSAQW   80 (81)
Q Consensus         8 i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~~~~~w   80 (81)
                      +.++++|.|+++    |+|+ +..+++++++||++++++||+|||+++ ++|.++|| ++||++|||+.++.++.+..|
T Consensus       166 ~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w  243 (262)
T 1r5l_A          166 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEW  243 (262)
T ss_dssp             HHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHHHHHHH
T ss_pred             HHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHH
Confidence            568999999999    9999 588899999999999999999998665 78999999 999999999998776666665

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.53  E-value=5.9e-16  Score=105.12  Aligned_cols=68  Identities=26%  Similarity=0.473  Sum_probs=61.4

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKIN   74 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~   74 (81)
                      .+.|+++|.|++.    |+|+ +..+++++++||++++++||+||++++ ++|+++||+++||++|||+....+
T Consensus       196 ~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~  269 (296)
T 1aua_A          196 YISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDE  269 (296)
T ss_dssp             HHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred             HHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence            4568999999999    9999 588999999999999999999998665 579999999999999999997665

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.50  E-value=4.8e-16  Score=107.51  Aligned_cols=69  Identities=26%  Similarity=0.364  Sum_probs=62.1

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINY   75 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~   75 (81)
                      .+.|+++|.|++.    |+|+ +..+++++++||++++++||+||++++ ++|.++||+++||++|||++...+.
T Consensus       211 ~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~  285 (320)
T 3q8g_A          211 DISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNP  285 (320)
T ss_dssp             HHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCCSST
T ss_pred             HHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCCCCC
Confidence            3568999999999    9999 488999999999999999999998665 6899999999999999999988653

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.48  E-value=1.7e-15  Score=106.77  Aligned_cols=69  Identities=23%  Similarity=0.372  Sum_probs=61.5

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINY   75 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~   75 (81)
                      .+.|+++|.|++.    |+|+ +..+++++++||++++++||+||++++ ++|.++||+++||++|||++...+.
T Consensus       176 ~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~~  250 (403)
T 1olm_A          176 CMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDG  250 (403)
T ss_dssp             HHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCTTC
T ss_pred             HHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCCCC
Confidence            3568999999999    9999 488999999999999999999998666 4799999999999999999986543

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=96.10  E-value=0.0041  Score=40.66  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             hhhhhhcCCCcccccccCCCCCccchHHHHHHHHHhc
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEI   38 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~~~~~~~~~k~fL~~k   38 (81)
                      ++|+++|+ +.||.+|||+.+..+.....|+..+.++
T Consensus       215 ~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~l~~~  250 (262)
T 1r5l_A          215 QSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKS  250 (262)
T ss_dssp             HHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHHHHHH
Confidence            57899999 9999999999988654566777776654

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=94.27  E-value=0.031  Score=38.00  Aligned_cols=25  Identities=36%  Similarity=0.745  Sum_probs=21.9

Q ss_pred             ChhhhhhcCCCcccccccCCCCCcc
Q psy14126          1 MSSLHKYIHPDTLPADYGGNKPKIN   25 (81)
Q Consensus         1 ~~~l~~~i~~~~lP~r~ggn~p~~~   25 (81)
                      +++|+++|+++.||.+|||+++..+
T Consensus       272 ~~~L~~~I~~~~LP~eyGG~~~~~d  296 (316)
T 3hx3_A          272 LSGFYQEIDENILPSDFGGTLPKYD  296 (316)
T ss_dssp             CHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred             HHHHHhhCCHhhCcHhhCCCCCCcC
Confidence            4689999999999999999988654

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=92.01  E-value=0.068  Score=35.62  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.4

Q ss_pred             hhhhhhcCCCcccccccCCCCC
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPK   23 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~   23 (81)
                      ++|+++|+++.||.+|||+++.
T Consensus       246 ~~L~~~i~~~~LP~~yGG~~~~  267 (296)
T 1aua_A          246 KELLKQIPAENLPVKFGGKSEV  267 (296)
T ss_dssp             HHHTTTSCSSSSBGGGTSCBCC
T ss_pred             HHHHhhCCHhhCcHHhCCCCCC
Confidence            4689999999999999997765

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=90.53  E-value=0.09  Score=35.88  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             hhhhhhcCCCcccccccCCCCC
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPK   23 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~   23 (81)
                      ++|+++|+++.||.+|||+++.
T Consensus       261 ~~L~~~i~~~~LP~~yGG~~~~  282 (320)
T 3q8g_A          261 KELLKQIPIENLPVKYGGTSVL  282 (320)
T ss_dssp             HHHHHHSCGGGSBGGGTSCBCC
T ss_pred             HHHHhhCChhhCChhhCCCCCC
Confidence            5789999999999999997766

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=89.27  E-value=0.12  Score=35.88  Aligned_cols=22  Identities=41%  Similarity=0.777  Sum_probs=19.0

Q ss_pred             hhhhhhcCCCcccccccCCCCC
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPK   23 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~   23 (81)
                      ++|+++|+++.||.+|||+++.
T Consensus       226 ~~L~~~I~~~~LP~~yGG~~~~  247 (403)
T 1olm_A          226 EVLLKHISPDQVPVEYGGTMTD  247 (403)
T ss_dssp             HHHTTTSCGGGSBGGGTSSBCC
T ss_pred             HHHHhhcChhhCchhhCCCcCC
Confidence            4789999999999999996553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	7e-08
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	6e-06
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	2e-04
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	0.002

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 7e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P L E     ++ HGN          PD LP +YGG +  +     +W 
Sbjct: 122 PFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWT 170

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 6e-06
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIED 40
                    PD LP +YGG +  +     +W   + + ED
Sbjct: 139 YKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSED 178

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWY-PVLDEIEDSIMYFHGNK-MSSLHKYIH 58
            S + +  +P+ +   Y  N P    ++ + + P LD +  S ++  G+     L K I 
Sbjct: 101 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIP 160

Query: 59  PDTLPADYGGN 69
            + LP  +GG 
Sbjct: 161 AENLPVKFGGK 171

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 33  PVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGNKP 71
           P L E     +   G      L K+I PD +P +YGG   
Sbjct: 132 PFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMT 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.65
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.51
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.34
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	96.16
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	92.39
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	88.61

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-18  Score=110.13  Aligned_cols=74  Identities=26%  Similarity=0.446  Sum_probs=66.3

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCChHHHhhhCCCCCCCCcCCCCCCCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW   80 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~~~~~~~~~~~w   80 (81)
                      .+.++++|.|+++    |+|+ +..+++++++||++++++||+||+++.+++..++++++||++|||++++.++..++|
T Consensus        91 ~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~~~~~~~~~~~~~LP~~~GG~~~~~~~~~~~~  169 (185)
T d1r5la2          91 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEW  169 (185)
T ss_dssp             HHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHSTTTSCGGGTCSSCCHHHHHHHH
T ss_pred             HHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccchHHHHhhcCHHhCCHhcCCCCCChHHHHHHH
Confidence            3558999999999    9999 588899999999999999999998788888888889999999999998877767666

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.9e-16  Score=99.26  Aligned_cols=69  Identities=23%  Similarity=0.379  Sum_probs=61.1

Q ss_pred             cCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCCC
Q psy14126          8 IHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINYS   76 (81)
Q Consensus         8 i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~~   76 (81)
                      +.|+++|.|++.    |+|+ +..+++++++||++++++||+|++.+. ++|+++|+++.||++|||+++..+.+
T Consensus       102 ~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP~~yGGt~~~~~~~  176 (199)
T d1olma3         102 MFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGN  176 (199)
T ss_dssp             HHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCTTCC
T ss_pred             HHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCCHHhCCCCCCCCCC
Confidence            457889999998    9999 488999999999999999999998655 67999999999999999999766544

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=2.2e-14  Score=91.26  Aligned_cols=68  Identities=26%  Similarity=0.470  Sum_probs=59.9

Q ss_pred             hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCC-hHHHhhhCCCCCCCCcCCCCCCCCC
Q psy14126          7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGNKPKIN   74 (81)
Q Consensus         7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~-~~~l~~~i~~~~LP~e~GG~~~~~~   74 (81)
                      .+.++.+|.+++.    |+|+ +..+++++++||++++++||++++++ .++|.++|+++.||.+|||++....
T Consensus       103 ~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~~  176 (203)
T d1auaa2         103 YISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDE  176 (203)
T ss_dssp             HHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred             HHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhChHHhCCCCcCCC
Confidence            3567889999998    9999 58889999999999999999999754 5789999999999999999987543

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.002  Score=38.96  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             hhhhhhcCCCcccccccCCCCCccchHHHHHHHHHhcc
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIE   39 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~~~~~~~~~k~fL~~k~   39 (81)
                      +++..++++++||.+|||++|..+.....|+..|.+..
T Consensus       140 ~~~~~~~~~~~LP~~~GG~~~~~~~~~~~~~~~~~~~~  177 (185)
T d1r5la2         140 KQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSE  177 (185)
T ss_dssp             HHHHHHHSTTTSCGGGTCSSCCHHHHHHHHHHHHHHTH
T ss_pred             HHHHhhcCHHhCCHhcCCCCCChHHHHHHHHHHHHHHH
Confidence            46677888999999999999986555677777666543

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.019  Score=34.83  Aligned_cols=22  Identities=41%  Similarity=0.777  Sum_probs=19.2

Q ss_pred             hhhhhhcCCCcccccccCCCCC
Q psy14126          2 SSLHKYIHPDTLPADYGGNKPK   23 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~p~   23 (81)
                      ++|+++|+++.+|.+|||+++.
T Consensus       151 ~~L~~~i~~~~lP~~yGGt~~~  172 (199)
T d1olma3         151 EVLLKHISPDQVPVEYGGTMTD  172 (199)
T ss_dssp             HHHTTTSCGGGSBGGGTSSBCC
T ss_pred             HHHHHhCCHhhCCHHhCCCCCC
Confidence            5689999999999999997654

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.61  E-value=0.086  Score=31.68  Aligned_cols=20  Identities=35%  Similarity=0.695  Sum_probs=17.8

Q ss_pred             hhhhhhcCCCcccccccCCC
Q psy14126          2 SSLHKYIHPDTLPADYGGNK   21 (81)
Q Consensus         2 ~~l~~~i~~~~lP~r~ggn~   21 (81)
                      ++|.++|+++.+|.+|||++
T Consensus       153 ~~L~~~id~~~LP~~~GG~~  172 (203)
T d1auaa2         153 KELLKQIPAENLPVKFGGKS  172 (203)
T ss_dssp             HHHTTTSCSSSSBGGGTSCB
T ss_pred             HHHHhhCCHhhChHHhCCCC
Confidence            56889999999999999954