Psyllid ID: psy14127


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70------
KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM
ccccccccccccccEEEccccEEEEEccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccccHEEEcccccEEEEEccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEc
krngeiplpegwdfaqdydgkvyfidhntkkttwidprdrydtledprLEWRAIQEAMLREYLTTahhdshnmivm
krngeiplpegwdfaqdyDGKVYFIdhntkkttwidprdrydtledprLEWRAIQEAMLREYLTtahhdshnmivm
KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM
*********EGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTA**********
****EIP*PEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD*********************EYLTTAHHD*****V*
KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM
****EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooo
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query76 2.2.26 [Sep-21-2011]
B4M5X4 1276 Protein kibra OS=Drosophi N/A N/A 0.894 0.053 0.409 6e-17
B4K6I9 1264 Protein kibra OS=Drosophi N/A N/A 0.894 0.053 0.4 1e-16
B4NAD3 1288 Protein kibra OS=Drosophi N/A N/A 0.921 0.054 0.383 5e-16
Q6AWC2 1192 Protein WWC2 OS=Homo sapi yes N/A 0.855 0.054 0.392 8e-16
Q6NXJ0 1187 Protein WWC2 OS=Mus muscu yes N/A 0.855 0.054 0.392 8e-16
Q6DJR2 1171 Protein WWC2 OS=Xenopus t yes N/A 0.881 0.057 0.403 2e-15
B4HEJ6 1295 Protein kibra OS=Drosophi N/A N/A 0.894 0.052 0.380 4e-15
B3LWS4 1271 Protein kibra OS=Drosophi N/A N/A 0.921 0.055 0.373 5e-15
B4PSQ2 1288 Protein kibra OS=Drosophi N/A N/A 0.894 0.052 0.380 6e-15
Q8IX03 1113 Protein KIBRA OS=Homo sap no N/A 0.828 0.056 0.39 6e-15
>sp|B4M5X4|KIBRA_DROVI Protein kibra OS=Drosophila virilis GN=Kibra PE=3 SV=1 Back     alignment and function desciption
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 52/105 (49%), Gaps = 37/105 (35%)

Query: 5   EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY----------------------- 41
           E PLPEGWD A+D+DGK Y+IDH  KKTTW+DPRDRY                       
Sbjct: 42  EFPLPEGWDIARDFDGKTYYIDHINKKTTWLDPRDRYTKPQSFEDCVGDELPVGWEEAYD 101

Query: 42  --------------DTLEDPRLEWRAIQEAMLREYLTTAHHDSHN 72
                           LEDPR EW+++QE ML +YL+ A     N
Sbjct: 102 SNIGRYYINHIAQSTQLEDPRQEWKSVQEQMLSDYLSAAQDQLEN 146




Regulator of the Hippo/SWH (Sav/Wts/Hpo) signaling pathway, a signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein Hippo (Hpo), in complex with its regulatory protein Salvador (Sav), phosphorylates and activates Warts (Wts) in complex with its regulatory protein Mats, which in turn phosphorylates and inactivates the Yorkie (Yki) oncoprotein. Kibra acts synergistically along with Ex and Mer to regulate the Hippo signaling pathway.
Drosophila virilis (taxid: 7244)
>sp|B4K6I9|KIBRA_DROMO Protein kibra OS=Drosophila mojavensis GN=Kibra PE=3 SV=1 Back     alignment and function description
>sp|B4NAD3|KIBRA_DROWI Protein kibra OS=Drosophila willistoni GN=Kibra PE=3 SV=1 Back     alignment and function description
>sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2 Back     alignment and function description
>sp|Q6NXJ0|WWC2_MOUSE Protein WWC2 OS=Mus musculus GN=Wwc2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DJR2|WWC2_XENTR Protein WWC2 OS=Xenopus tropicalis GN=wwc2 PE=2 SV=1 Back     alignment and function description
>sp|B4HEJ6|KIBRA_DROSE Protein kibra OS=Drosophila sechellia GN=Kibra PE=3 SV=1 Back     alignment and function description
>sp|B3LWS4|KIBRA_DROAN Protein kibra OS=Drosophila ananassae GN=Kibra PE=3 SV=1 Back     alignment and function description
>sp|B4PSQ2|KIBRA_DROYA Protein kibra OS=Drosophila yakuba GN=Kibra PE=3 SV=1 Back     alignment and function description
>sp|Q8IX03|KIBRA_HUMAN Protein KIBRA OS=Homo sapiens GN=WWC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
345487733 1411 PREDICTED: protein kibra-like [Nasonia v 0.881 0.047 0.557 4e-24
328698382 1061 PREDICTED: protein kibra-like isoform 1 0.881 0.063 0.548 4e-24
340724078 1342 PREDICTED: protein kibra-like [Bombus te 0.881 0.049 0.548 1e-23
350420833 1342 PREDICTED: protein kibra-like [Bombus im 0.881 0.049 0.548 1e-23
380011086 1278 PREDICTED: protein kibra-like [Apis flor 0.881 0.052 0.548 2e-23
110755844 1278 PREDICTED: protein kibra-like isoform 2 0.881 0.052 0.548 2e-23
383863280 1284 PREDICTED: protein kibra-like isoform 1 0.881 0.052 0.538 4e-23
321475237 1234 hypothetical protein DAPPUDRAFT_193293 [ 0.907 0.055 0.528 5e-23
189236477 1113 PREDICTED: similar to CG33967 CG33967-PA 0.881 0.060 0.528 1e-22
242019008 1256 myosin-2 heavy chain, non muscle, putati 0.881 0.053 0.538 8e-22
>gi|345487733|ref|XP_001603098.2| PREDICTED: protein kibra-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 61/104 (58%), Gaps = 37/104 (35%)

Query: 1   KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDT----------------- 43
           +RNGEIPLPEGWD AQDYDGKVYFIDHNT+KTTWIDPRDR+                   
Sbjct: 4   RRNGEIPLPEGWDVAQDYDGKVYFIDHNTRKTTWIDPRDRFTKPQTFADCIGNELPLGWE 63

Query: 44  --------------------LEDPRLEWRAIQEAMLREYLTTAH 67
                               LEDPR EWRAIQEAMLREYL TA 
Sbjct: 64  EAYDKHVGAYYINHVNQTTQLEDPRQEWRAIQEAMLREYLQTAQ 107




Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698382|ref|XP_001946853.2| PREDICTED: protein kibra-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340724078|ref|XP_003400412.1| PREDICTED: protein kibra-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350420833|ref|XP_003492641.1| PREDICTED: protein kibra-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380011086|ref|XP_003689644.1| PREDICTED: protein kibra-like [Apis florea] Back     alignment and taxonomy information
>gi|110755844|ref|XP_396884.3| PREDICTED: protein kibra-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|383863280|ref|XP_003707109.1| PREDICTED: protein kibra-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|321475237|gb|EFX86200.1| hypothetical protein DAPPUDRAFT_193293 [Daphnia pulex] Back     alignment and taxonomy information
>gi|189236477|ref|XP_974791.2| PREDICTED: similar to CG33967 CG33967-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242019008|ref|XP_002429959.1| myosin-2 heavy chain, non muscle, putative [Pediculus humanus corporis] gi|212515010|gb|EEB17221.1| myosin-2 heavy chain, non muscle, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
UNIPROTKB|B4M5X4 1276 Kibra "Protein kibra" [Drosoph 0.526 0.031 0.7 3.1e-12
UNIPROTKB|B4K6I9 1264 Kibra "Protein kibra" [Drosoph 0.526 0.031 0.675 6.5e-12
MGI|MGI:1261872 1187 Wwc2 "WW, C2 and coiled-coil d 0.5 0.032 0.684 9.8e-12
UNIPROTKB|B4NAD3 1288 Kibra "Protein kibra" [Drosoph 0.513 0.030 0.666 1.8e-11
MGI|MGI:2388637 1104 Wwc1 "WW, C2 and coiled-coil d 0.486 0.033 0.702 3.9e-11
UNIPROTKB|Q8IX03 1113 WWC1 "Protein KIBRA" [Homo sap 0.486 0.033 0.702 3.9e-11
ZFIN|ZDB-GENE-070209-229 1148 zgc:158241 "zgc:158241" [Danio 0.526 0.034 0.625 4.1e-11
UNIPROTKB|B3LWS4 1271 Kibra "Protein kibra" [Drosoph 0.605 0.036 0.571 4.6e-11
UNIPROTKB|B3P3M8 1283 Kibra "Protein kibra" [Drosoph 0.605 0.035 0.571 4.7e-11
FB|FBgn0262127 1288 kibra "kibra ortholog" [Drosop 0.605 0.035 0.571 4.7e-11
UNIPROTKB|B4M5X4 Kibra "Protein kibra" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
 Score = 178 (67.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query:     2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41
             ++ E PLPEGWD A+D+DGK Y+IDH  KKTTW+DPRDRY
Sbjct:    39 QHSEFPLPEGWDIARDFDGKTYYIDHINKKTTWLDPRDRY 78


GO:0035330 "regulation of hippo signaling cascade" evidence=ISS
UNIPROTKB|B4K6I9 Kibra "Protein kibra" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
MGI|MGI:1261872 Wwc2 "WW, C2 and coiled-coil domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4NAD3 Kibra "Protein kibra" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
MGI|MGI:2388637 Wwc1 "WW, C2 and coiled-coil domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IX03 WWC1 "Protein KIBRA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070209-229 zgc:158241 "zgc:158241" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B3LWS4 Kibra "Protein kibra" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
UNIPROTKB|B3P3M8 Kibra "Protein kibra" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
FB|FBgn0262127 kibra "kibra ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UTG2PUB2_SCHPO6, ., 3, ., 2, ., -0.60600.43420.0491yesN/A
P39940RSP5_YEAST6, ., 3, ., 2, ., -0.59370.42100.0395yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 2e-08
pfam0039730 pfam00397, WW, WW domain 5e-08
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 2e-07
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
 Score = 44.9 bits (107), Expect = 2e-08
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 7  PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
          PLP GW+  +D DG+ Y+ +H TK+T W  PR+
Sbjct: 1  PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33


Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 76
KOG1891|consensus 271 99.54
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 99.13
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 99.07
cd0020131 WW Two conserved tryptophans domain; also known as 98.93
KOG3209|consensus 984 98.91
KOG3259|consensus163 98.22
KOG1891|consensus271 97.37
KOG0940|consensus 358 94.53
KOG0940|consensus 358 93.52
KOG4334|consensus 650 93.31
COG5104 590 PRP40 Splicing factor [RNA processing and modifica 93.26
KOG4286|consensus 966 92.38
KOG3209|consensus 984 91.49
COG5104 590 PRP40 Splicing factor [RNA processing and modifica 87.05
KOG3552|consensus 1298 86.41
KOG3427|consensus 222 80.31
>KOG1891|consensus Back     alignment and domain information
Probab=99.54  E-value=2.5e-15  Score=104.87  Aligned_cols=59  Identities=31%  Similarity=0.748  Sum_probs=54.7

Q ss_pred             CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCcCCCchhhHHHHHHhhhhhhccc
Q psy14127          4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTA   66 (76)
Q Consensus         4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~~~~~~~w~~~~~~~~~~~~~~~   66 (76)
                      .+.+||+||...++..|+.|||||++++|+|.||...    |.+++||+++.+.+.++||...
T Consensus        90 edlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPler----EgLppGW~rv~s~e~GtyY~~~  148 (271)
T KOG1891|consen   90 EDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLER----EGLPPGWKRVFSPEKGTYYYHE  148 (271)
T ss_pred             ccCCCCCCcceeeEecCceeEeecCCCcccccChhhh----ccCCcchhhccccccceeeeec
Confidence            4678999999999999999999999999999999776    7899999999999999999863



>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG3209|consensus Back     alignment and domain information
>KOG3259|consensus Back     alignment and domain information
>KOG1891|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG4334|consensus Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG3209|consensus Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>KOG3427|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
2ysd_A57 Solution Structure Of The First Ww Domain From The 4e-08
2law_A38 Structure Of The Second Ww Domain From Human Yap In 2e-06
3olm_A 429 Structure And Function Of A Ubiquitin Binding Site 3e-06
3l4h_A109 Helical Box Domain And Second Ww Domain Of The Huma 3e-06
2jo9_A37 Mouse Itch 3rd Ww Domain Complex With The Epstein-B 5e-06
2l4j_A46 Yap Ww2 Length = 46 5e-06
2ltv_A36 Yap Ww2 In Complex With A Smad7 Derived Peptide Len 5e-06
1i5h_W50 Solution Structure Of The Rnedd4 Wwiii Domain-Renac 8e-06
2op7_A39 Ww4 Length = 39 9e-06
2kpz_A49 Human Nedd4 3rd Ww Domain Complex With The Human T- 1e-05
2djy_A42 Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Pe 1e-05
1e0m_A37 Prototype Ww Domain Length = 37 2e-05
2ysf_A40 Solution Structure Of The Fourth Ww Domain From The 2e-05
2ez5_W46 Solution Structure Of The Dnedd4 Ww3 Domain- Comm L 2e-05
2joc_A37 Mouse Itch 3rd Domain Phosphorylated In T30 Length 2e-05
2lax_A40 Structure Of First Ww Domain Of Human Yap In Comple 4e-05
1wr7_A41 Solution Structure Of The Third Ww Domain Of Nedd4- 4e-05
2ltz_A37 Smurf2 Ww3 Domain In Complex With A Smad7 Derived P 4e-05
2lay_A36 Structure Of The First Ww Domain Of Human Yap In Co 5e-05
2kxq_A90 Solution Structure Of Smurf2 Ww2 And Ww3 Bound To S 5e-05
2lb1_A35 Structure Of The Second Domain Of Human Smurf1 In C 5e-05
2ltx_A35 Smurf1 Ww2 Domain In Complex With A Smad7 Derived P 5e-05
1k9q_A40 Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2 7e-05
2jmf_A53 Solution Structure Of The Su(Dx) Ww4- Notch Py Pept 8e-05
1wmv_A54 Solution Structure Of The Second Ww Domain Of Wwox 1e-04
1k5r_A41 Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid 1e-04
2laj_A44 Third Ww Domain Of Human Nedd4l In Complex With Dou 1e-04
1tk7_A88 Nmr Structure Of Ww Domains (Ww3-4) From Suppressor 1e-04
1jmq_A46 Yap65 (L30k Mutant) Ww Domain In Complex With Gtppp 1e-04
1wr4_A36 Solution Structure Of The Second Ww Domain Of Nedd4 5e-04
2lb2_A35 Structure Of The Second Domain Of Human Nedd4l In C 8e-04
2ysg_A40 Solution Structure Of The Ww Domain From The Human 9e-04
2kyk_A39 The Sandwich Region Between Two Lmp2a Py Motif Regu 9e-04
>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human Membrane-Associated Guanylate Kinase, Ww And Pdz Domain- Containing Protein 1. Magi-1 Length = 57 Back     alignment and structure

Iteration: 1

Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 26/32 (81%) Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38 PLPE W+ A +G+VYFIDHNTK T+W+DPR Sbjct: 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPR 45
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In Complex With A Human Smad1 Derived Peptide Length = 38 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3 Ubiq Protein Ligase Hecw1 Length = 109 Back     alignment and structure
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr Virus Latent Membrane Protein 2a Derived Peptide Eeppppyed Length = 37 Back     alignment and structure
>pdb|2L4J|A Chain A, Yap Ww2 Length = 46 Back     alignment and structure
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide Length = 36 Back     alignment and structure
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex Length = 50 Back     alignment and structure
>pdb|2OP7|A Chain A, Ww4 Length = 39 Back     alignment and structure
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide Sdpqipppyvep Length = 49 Back     alignment and structure
>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide Complex Length = 42 Back     alignment and structure
>pdb|1E0M|A Chain A, Prototype Ww Domain Length = 37 Back     alignment and structure
>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch Length = 40 Back     alignment and structure
>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy Peptide Complex Length = 46 Back     alignment and structure
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30 Length = 37 Back     alignment and structure
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex With A Human Smad1 Doubly-Phosphorilated Derived Peptide Length = 40 Back     alignment and structure
>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2 Length = 41 Back     alignment and structure
>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide Length = 37 Back     alignment and structure
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex With A Phosphorylated Human Smad1 Derived Peptide Length = 36 Back     alignment and structure
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py Motif Containing Peptide Length = 90 Back     alignment and structure
>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex With A Human Smad1 Derived Peptide Length = 35 Back     alignment and structure
>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 35 Back     alignment and structure
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2 Length = 40 Back     alignment and structure
>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide Complex Length = 53 Back     alignment and structure
>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox Length = 54 Back     alignment and structure
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant Length = 41 Back     alignment and structure
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly Phosphorylated Human Smad3 Derived Peptide Length = 44 Back     alignment and structure
>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of Deltex Length = 88 Back     alignment and structure
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg Peptide Length = 46 Back     alignment and structure
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2 Length = 36 Back     alignment and structure
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex With A Phosphorylated Ptpy Motif Derived From Human Smad3 Length = 35 Back     alignment and structure
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human Syntaxin- Binding Protein 4 Length = 40 Back     alignment and structure
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates The Interaction Between Aip4ww2domain And Py Motif Length = 39 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 3e-16
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 3e-16
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 3e-16
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 4e-16
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 4e-16
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 4e-16
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 4e-16
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 5e-16
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 8e-16
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 1e-15
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 1e-15
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 1e-15
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng 2e-15
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 2e-15
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 2e-15
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 2e-15
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 3e-15
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 3e-15
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 8e-15
1ymz_A43 CC45; artificial protein, computational design, un 9e-15
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 8e-14
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 3e-12
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 3e-12
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 5e-12
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 1e-11
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 1e-11
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 2e-11
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 4e-11
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 5e-08
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 1e-07
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 3e-06
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 2e-06
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 2e-06
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 1e-04
1eg3_A 261 Dystrophin; EF-hand like domain, WW domain, struct 4e-06
2jxw_A75 WW domain-binding protein 4; WW domain containing 4e-04
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50 Back     alignment and structure
 Score = 64.6 bits (158), Expect = 3e-16
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 3  NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
          N   PLP GW+     DG+V+FI+HN KKT W DPR
Sbjct: 7  NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42


>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53 Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46 Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54 Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49 Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42 Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109 Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 99.62
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 99.61
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 99.61
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 99.61
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 99.61
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 99.6
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 99.6
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 99.59
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 99.59
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 99.58
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 99.58
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 99.58
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 99.56
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 99.56
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 99.56
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 99.55
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 99.54
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 99.52
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 99.52
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 99.51
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 99.5
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 99.48
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 99.46
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 99.43
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 99.43
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 99.42
1ymz_A43 CC45; artificial protein, computational design, un 99.4
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 99.38
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 99.32
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 99.29
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 99.28
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 99.26
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 99.23
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 99.11
1eg3_A 261 Dystrophin; EF-hand like domain, WW domain, struct 99.1
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 99.04
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 99.03
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 98.95
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 98.93
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.85
2jxw_A75 WW domain-binding protein 4; WW domain containing 98.73
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 98.54
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 98.45
2jxw_A75 WW domain-binding protein 4; WW domain containing 98.38
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.35
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 98.24
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.18
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 97.72
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 97.55
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 97.47
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 96.89
2dk7_A73 Transcription elongation regulator 1; structural g 96.7
3le4_A79 Microprocessor complex subunit DGCR8; WW motif, di 96.27
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
Probab=99.62  E-value=9e-16  Score=80.35  Aligned_cols=39  Identities=49%  Similarity=0.953  Sum_probs=35.7

Q ss_pred             CCCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127          2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR   40 (76)
Q Consensus         2 ~~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~   40 (76)
                      ++...+||+|||++++++|++||+||+|++|+|+||+..
T Consensus         2 ~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~~   40 (40)
T 2ysf_A            2 SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG   40 (40)
T ss_dssp             CCCCCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTTC
T ss_pred             CCCcCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCCC
Confidence            356788999999999999999999999999999999863



>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 76
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 5e-14
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 7e-14
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 9e-14
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 1e-13
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 1e-08
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 9e-05
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 7e-04
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]
 Score = 57.3 bits (139), Expect = 5e-14
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 7  PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
          PLP GW+      G+ +F+DHNT++TT+ DPR
Sbjct: 2  PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33


>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 99.7
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 99.62
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 99.61
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 99.6
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 99.35
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.55
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.39
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 98.38
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.2
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 98.19
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 97.87
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.68
d2ysca126 Amyloid beta A4 precursor protein-binding family B 95.32
d1e0na_27 Hypothetical protein Yjq8 (Set2p) {Baker's yeast ( 82.64
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70  E-value=1.1e-17  Score=83.63  Aligned_cols=33  Identities=48%  Similarity=1.011  Sum_probs=31.8

Q ss_pred             CCCCcCceEEEcCCCcEEEeeCCCCeeeccCCC
Q psy14127          6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR   38 (76)
Q Consensus         6 ~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr   38 (76)
                      ++||+|||++++.+|++|||||++++|+|+|||
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            479999999999999999999999999999997



>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure