Psyllid ID: psy14128

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---

AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSIR

cccccHHHHccccccccccccHHHHHHcccccccEEEEEccccccccccccccccHHHHHHHHccccccccccccccccEEEEcccEEEccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEcccccccccHHcccccHHHHHHHHcccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccEEEEEcccccccc

ccccEHHHHHcccccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHcccHHHHHHHHcccccccHcHEcccccEEEEcccEEcccHHHHHHHHHHHHHHHcccccHEEEEEccHHcHHHHHHHHHHHHHcccccccccccccccccccccccHEEEccccccHHHccEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccEcHHHccccHHHHHHHHccccHHHHHHHHccccEEEEccHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHccccccEEEEEcccHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHccccEEEEEEcccccccc

AEEADLILLigtnprfeaplfnARIRKGyltneldvayigpkvdlrydyehlGESADLIKQLasgshpfskklsaakkPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKlgsedlyteyafplegagtdlraNYLLNNKIAGAEEADLILLIgtnprfeaplfnARIRKGyltneldvayigpkvdlrydyehlgESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTcesdhlgeSADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVtcesdvpcdwKVLNILQKAASQVAALdigykpgtsairekppKVLFLLgadegsir

aeeadlilligtnprfeaplFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKpgtsairekppkvlfllgadegsir

AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSDGaavlalvqqlaaKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGaavlalvqqlaaKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGaavlalvqqlaaKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSIR

*****LILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQL*************AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIR***PKVLFLL********

**EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGAD*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		393	2.2.26 [Sep-21-2011]
Q66HF1		727	NADH-ubiquinone oxidoredu	yes	N/A	0.597	0.323	0.472	1e-64
Q0MQG1		727	NADH-ubiquinone oxidoredu	N/A	N/A	0.597	0.323	0.456	2e-63
P28331		727	NADH-ubiquinone oxidoredu	yes	N/A	0.597	0.323	0.456	2e-63
Q0MQG2		727	NADH-ubiquinone oxidoredu	yes	N/A	0.597	0.323	0.452	5e-63
Q4R6K9		727	NADH-ubiquinone oxidoredu	N/A	N/A	0.597	0.323	0.452	7e-63
P0CB68		727	NADH-ubiquinone oxidoredu	N/A	N/A	0.597	0.323	0.449	1e-62
P15690		727	NADH-ubiquinone oxidoredu	yes	N/A	0.559	0.302	0.453	4e-62
P0CB67		727	NADH-ubiquinone oxidoredu	yes	N/A	0.597	0.323	0.446	5e-62
Q91VD9		727	NADH-ubiquinone oxidoredu	yes	N/A	0.554	0.299	0.460	3e-61
Q94511		731	NADH-ubiquinone oxidoredu	yes	N/A	0.409	0.220	0.607	4e-50

>sp\|Q66HF1\|NDUS1_RAT NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1	Back alignment and function desciption

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/307 (47%), Positives = 182/307 (59%), Gaps = 72/307 (23%)

Query: 86  DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
           D LSR     V  ++Q    K      VA + G L DAEA+VALKDLLNK+ S+ L TE 
Sbjct: 321 DALSR-----VAGMLQSFEGKA-----VAAIAGGLVDAEALVALKDLLNKVDSDTLCTEE 370

Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
            FP EGAGTDLR+NYLLN  IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 IFPNEGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430

Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
            IG  VDL Y Y+HLG+S  +++ +ASG+H FSK L AAKKP++V+G+  L R DGAA+L
Sbjct: 431 LIGSPVDLTYRYDHLGDSPKILQDIASGNHEFSKVLNAAKKPMVVLGSSALQRDDGAAIL 490

Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
           A V  +A K+               ++ASG+ A  K                        
Sbjct: 491 AAVSSIAQKI---------------RVASGAAAEWK------------------------ 511

Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
           V+ ++ ++A                       SQVAALD+GYKPG  AIR+ PPK+LFLL
Sbjct: 512 VMNILHRIA-----------------------SQVAALDLGYKPGVEAIRKNPPKLLFLL 548

Query: 386 GADEGSI 392
           GAD G I
Sbjct: 549 GADGGCI 555

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp\|Q0MQG1\|NDUS1_GORGO NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P28331\|NDUS1_HUMAN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3	Back alignment and function description

>sp\|Q0MQG2\|NDUS1_PANTR NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q4R6K9\|NDUS1_MACFA NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P0CB68\|NDUS1_PONPY NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P15690\|NDUS1_BOVIN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1	Back alignment and function description

>sp\|P0CB67\|NDUS1_PONAB NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q91VD9\|NDUS1_MOUSE NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=2	Back alignment and function description

>sp\|Q94511\|NDUS1_DROME NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Drosophila melanogaster GN=ND75 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
348536897		731	PREDICTED: NADH-ubiquinone oxidoreductas	0.643	0.346	0.458	5e-64
321476647		726	hypothetical protein DAPPUDRAFT_192333 [	0.557	0.301	0.483	5e-63
347966322		726	AGAP001653-PA [Anopheles gambiae str. PE	0.547	0.296	0.467	7e-63
53850628		727	NADH-ubiquinone oxidoreductase 75 kDa su	0.597	0.323	0.472	8e-63
149046009		674	NADH dehydrogenase (ubiquinone) Fe-S pro	0.597	0.348	0.472	1e-62
91088235		727	PREDICTED: similar to NADH-ubiquinone ox	0.549	0.297	0.464	1e-62
410896774		734	PREDICTED: NADH-ubiquinone oxidoreductas	0.557	0.298	0.473	1e-62
444730430		664	NADH-ubiquinone oxidoreductase 75 kDa su	0.597	0.353	0.459	5e-62
410905861		727	PREDICTED: NADH-ubiquinone oxidoreductas	0.559	0.302	0.468	6e-62
417412491		728	Putative nadh-ubiquinone oxidoreductase	0.597	0.322	0.459	9e-62

>gi\|348536897\|ref\|XP_003455932.1\| PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like [Oreochromis niloticus]	Back alignment and taxonomy information

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 187/327 (57%), Gaps = 74/327 (22%)

Query: 66  SHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEA 125
           + P  K  S    P      D L+R  GA  L  VQ         S+VA +VG +ADAE 
Sbjct: 307 TQPMVKDESGQLTP--TTWEDALTRVAGA--LQSVQG--------SEVAAIVGGMADAEG 354

Query: 126 MVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFE 185
           +VALKDLLN+L SE+L TE  FP+ GAGTDLR+NYLLN++IAG E+ DL+LL+GTNPR+E
Sbjct: 355 LVALKDLLNRLNSENLCTEELFPMAGAGTDLRSNYLLNSRIAGIEDCDLLLLVGTNPRYE 414

Query: 186 APLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAK 245
           APLFNARIRK +L NEL VA +G KVDL Y Y+HLGE   ++KQLA+G+HAF K L+AAK
Sbjct: 415 APLFNARIRKSWLHNELQVAMVGHKVDLSYTYDHLGEDTSVLKQLANGTHAFCKVLSAAK 474

Query: 246 KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAA 305
           +P++VVG+  L R DG A+L+ V  +A                  Q A  S         
Sbjct: 475 RPVVVVGSSALQREDGVAILSAVSTIA------------------QNARASSGV------ 510

Query: 306 AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDI 365
                           DG  VL ++ ++A                       SQVAALD+
Sbjct: 511 ---------------EDGWKVLNVLHRVA-----------------------SQVAALDL 532

Query: 366 GYKPGTSAIREKPPKVLFLLGADEGSI 392
           GYK G  AIR+ PPKVLFLLGAD G I
Sbjct: 533 GYKAGVDAIRKNPPKVLFLLGADAGCI 559

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|321476647\|gb\|EFX87607.1\| hypothetical protein DAPPUDRAFT_192333 [Daphnia pulex]	Back alignment and taxonomy information

>gi\|347966322\|ref\|XP_321442.4\| AGAP001653-PA [Anopheles gambiae str. PEST] gi\|347966324\|ref\|XP_003435895.1\| AGAP001653-PB [Anopheles gambiae str. PEST] gi\|333470111\|gb\|EAA00921.4\| AGAP001653-PA [Anopheles gambiae str. PEST] gi\|333470112\|gb\|EGK97518.1\| AGAP001653-PB [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi|53850628|ref|NP_001005550.1| NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor [Rattus norvegicus] gi|81884209|sp|Q66HF1.1|NDUS1_RAT RecName: Full=NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; Flags: Precursor gi|51858651|gb|AAH81892.1| NADH dehydrogenase (ubiquinone) Fe-S protein 1 [Rattus norvegicus] gi|149046007|gb|EDL98900.1| NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_a [Rattus norvegicus] gi|149046008|gb|EDL98901.1| NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_a [Rattus norvegicus] gi|149046010|gb|EDL98903.1| NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_a [Rattus norvegicus] gi|149046011|gb|EDL98904.1| NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_a [Rattus norvegicus]

Back alignment and taxonomy information

>gi\|149046009\|gb\|EDL98902.1\| NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_b [Rattus norvegicus]	Back alignment and taxonomy information

>gi\|91088235\|ref\|XP_973797.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor (Complex I-75kD) (CI-75kD) [Tribolium castaneum] gi\|270012773\|gb\|EFA09221.1\| hypothetical protein TcasGA2_TC006252 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|410896774\|ref\|XP_003961874.1\| PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like [Takifugu rubripes]	Back alignment and taxonomy information

>gi\|444730430\|gb\|ELW70814.1\| NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial [Tupaia chinensis]	Back alignment and taxonomy information

>gi\|410905861\|ref\|XP_003966410.1\| PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like [Takifugu rubripes]	Back alignment and taxonomy information

>gi\|417412491\|gb\|JAA52627.1\| Putative nadh-ubiquinone oxidoreductase ndufs1/75 kda subunit, partial [Desmodus rotundus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
UNIPROTKB\|B4DJ81		611	NDUFS1 "cDNA FLJ60586, highly	0.536	0.345	0.493	8.7e-51
RGD\|1359670		727	Ndufs1 "NADH dehydrogenase (ub	0.534	0.288	0.504	8.9e-51
UNIPROTKB\|P28331		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.493	1.2e-50
UNIPROTKB\|Q0MQG1		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.493	1.2e-50
UNIPROTKB\|P0CB67		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.493	1.5e-50
UNIPROTKB\|P0CB68		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.493	1.5e-50
UNIPROTKB\|Q0MQG2		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.488	2.2e-50
UNIPROTKB\|P15690		727	NDUFS1 "NADH-ubiquinone oxidor	0.539	0.291	0.482	3e-50
UNIPROTKB\|Q4R6K9		727	NDUFS1 "NADH-ubiquinone oxidor	0.536	0.290	0.488	5.5e-50
UNIPROTKB\|F1SHD7		742	NDUFS1 "Uncharacterized protei	0.539	0.285	0.491	7.4e-50

UNIPROTKB\|B4DJ81 NDUFS1 "cDNA FLJ60586, highly similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial (EC 1.6.5.3)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 507 (183.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 110/223 (49%), Positives = 147/223 (65%)

Query:   112 DVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171
             DVA + G L DAEA+VALKDLLN++ S+ L TE  FP  GAGTDLR+NYLLN  IAG EE
Sbjct:   221 DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEE 280

Query:   172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLA 231
             AD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG  VDL Y Y+HLG+S  +++ +A
Sbjct:   281 ADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIA 340

Query:   232 SGSHAFSKKLAAAKKPLIVVGADMLSRSDGXXXXXXXXXXXXKVTCESDHLGE--SADLI 289
             SGSH FS+ L  AKKP++V+G+  L R+DG            K+   S   G+    +++
Sbjct:   341 SGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNIL 400

Query:   290 KQLASGSHA----FSKKLAAAKK-P---LIVVGAD--MLSRSD 322
              ++AS   A    +   + A +K P   L ++GAD   ++R D
Sbjct:   401 HRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQD 443

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042773 "ATP synthesis coupled electron transport" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD\|1359670 Ndufs1 "NADH dehydrogenase (ubiquinone) Fe-S protein 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P28331 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0MQG1 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]	Back alignment and assigned GO terms

UNIPROTKB\|P0CB67 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|P0CB68 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pongo pygmaeus (taxid:9600)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0MQG2 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pan troglodytes (taxid:9598)]	Back alignment and assigned GO terms

UNIPROTKB\|P15690 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R6K9 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHD7 NDUFS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94511	NDUS1_DROME	1, ., 6, ., 9, 9, ., 3	0.6073	0.4096	0.2202	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		393
cd02773		375	cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Na	6e-74
PRK09130		687	PRK09130, PRK09130, NADH dehydrogenase subunit G;	8e-63
cd02768		386	cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG	1e-50
cd02773		375	cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Na	6e-47
pfam00384		358	pfam00384, Molybdopterin, Molybdopterin oxidoreduc	8e-45
PRK09130		687	PRK09130, PRK09130, NADH dehydrogenase subunit G;	1e-43
TIGR01973		603	TIGR01973, NuoG, NADH-quinone oxidoreductase, chai	8e-40
cd02773		375	cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Na	2e-39
cd02774		366	cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_	3e-29
pfam00384		358	pfam00384, Molybdopterin, Molybdopterin oxidoreduc	6e-29
cd02768		386	cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG	7e-28
TIGR01973		603	TIGR01973, NuoG, NADH-quinone oxidoreductase, chai	8e-28
COG1034		693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	8e-27
cd02774		366	cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_	1e-18
COG1034		693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	2e-17
cd00368		374	cd00368, Molybdopterin-Binding, Molybdopterin-Bind	3e-13
cd02772		414	cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The s	1e-10
COG1034		693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	4e-10
PRK09129		776	PRK09129, PRK09129, NADH dehydrogenase subunit G;	4e-08
PRK09129		776	PRK09129, PRK09129, NADH dehydrogenase subunit G;	5e-06
cd00368		374	cd00368, Molybdopterin-Binding, Molybdopterin-Bind	2e-05
cd02771		472	cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7:	2e-04
cd02772		414	cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The s	3e-04
PRK08166		791	PRK08166, PRK08166, NADH dehydrogenase subunit G;	0.001

>gnl\|CDD\|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

 Score =  234 bits (599), Expect = 6e-74
 Identities = 97/165 (58%), Positives = 117/165 (70%), Gaps = 2/165 (1%)

Query: 111 SDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE 170
            ++A + G LAD E+MVALKDLLNKLGSE+L  E   P      DLR+NYL N  IAG E
Sbjct: 87  DEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGP--DLPADLRSNYLFNTTIAGIE 144

Query: 171 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQL 230
           EAD +LL+GTNPRFEAP+ NARIRK +L   L V  IGP VDL YDY+HLG  A  ++ +
Sbjct: 145 EADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDI 204

Query: 231 ASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKV 275
           ASG H FSK L  AKKP+I+VG+  L+R DGAA+LA V +LA K 
Sbjct: 205 ASGKHPFSKALKDAKKPMIIVGSGALARKDGAAILAAVAKLAKKN 249

The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to the molybdopterin_binding (MopB) superfamily of proteins. Length = 375

>gnl\|CDD\|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>gnl\|CDD\|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>gnl\|CDD\|215888 pfam00384, Molybdopterin, Molybdopterin oxidoreductase	Back alignment and domain information

>gnl\|CDD\|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>gnl\|CDD\|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>gnl\|CDD\|239175 cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>gnl\|CDD\|215888 pfam00384, Molybdopterin, Molybdopterin oxidoreductase	Back alignment and domain information

>gnl\|CDD\|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>gnl\|CDD\|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>gnl\|CDD\|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239175 cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>gnl\|CDD\|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>gnl\|CDD\|239173 cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>gnl\|CDD\|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>gnl\|CDD\|239172 cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>gnl\|CDD\|239173 cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>gnl\|CDD\|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		393
COG3383		978	Uncharacterized anaerobic dehydrogenase [General f	100.0
cd02774		366	MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: M	100.0
PRK09130		687	NADH dehydrogenase subunit G; Validated	100.0
cd02773		375	MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s	100.0
PRK09939		759	putative oxidoreductase; Provisional	100.0
PRK07860		797	NADH dehydrogenase subunit G; Validated	100.0
PRK09129		776	NADH dehydrogenase subunit G; Validated	100.0
cd02752		649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	100.0
cd02772		414	MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma	100.0
TIGR01701		743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	100.0
TIGR01973		603	NuoG NADH-quinone oxidoreductase, chain G. This mo	100.0
cd02767		574	MopB_ydeP The MopB_ydeP CD includes a group of rel	100.0
KOG2282\|consensus		708		100.0
TIGR01553		1009	formate-DH-alph formate dehydrogenase, alpha subun	100.0
cd02766		501	MopB_3 The MopB_3 CD includes a group of related u	100.0
cd02756		676	MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) ox	100.0
cd02768		386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	100.0
cd02754		565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	100.0
TIGR01591		671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	99.98
cd02762		539	MopB_1 The MopB_1 CD includes a group of related u	99.98
cd02753		512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	99.98
cd02759		477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	99.97
TIGR01706		830	NAPA periplasmic nitrate reductase, large subunit.	99.97
PRK13532		830	nitrate reductase catalytic subunit; Provisional	99.97
cd02750		461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	99.97
cd02755		454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	99.97
cd02771		472	MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The secon	99.97
PRK08166		847	NADH dehydrogenase subunit G; Validated	99.97
cd02764		524	MopB_PHLH The MopB_PHLH CD includes a group of rel	99.96
TIGR02693		806	arsenite_ox_L arsenite oxidase, large subunit. Thi	99.96
PF00384		432	Molybdopterin: Molybdopterin oxidoreductase; Inter	99.96
TIGR03479		912	DMSO_red_II_alp DMSO reductase family type II enzy	99.96
cd02751		609	MopB_DMSOR-like The MopB_DMSOR-like CD contains di	99.96
cd02765		567	MopB_4 The MopB_4 CD includes a group of related u	99.96
cd00368		374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	99.96
PRK15488		759	thiosulfate reductase PhsA; Provisional	99.96
cd02758		735	MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD	99.95
COG0243		765	BisC Anaerobic dehydrogenases, typically selenocys	99.95
cd02763		679	MopB_2 The MopB_2 CD includes a group of related u	99.95
cd02770		617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	99.95
TIGR00509		770	bisC_fam molybdopterin guanine dinucleotide-contai	99.95
TIGR03129		421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	99.94
cd02769		609	MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD	99.94
TIGR02166		797	dmsA_ynfE anaerobic dimethyl sulfoxide reductase,	99.94
cd02757		523	MopB_Arsenate-R This CD includes the respiratory a	99.94
PRK14990		814	anaerobic dimethyl sulfoxide reductase subunit A;	99.94
cd02761		415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	99.93
TIGR02164		822	torA trimethylamine-N-oxide reductase TorA. This v	99.93
PRK15102		825	trimethylamine N-oxide reductase I catalytic subun	99.92
cd02760		760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	99.92
PRK14991		1031	tetrathionate reductase subunit A; Provisional	99.89
cd02774		366	MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: M	99.86
PRK08493		819	NADH dehydrogenase subunit G; Validated	99.84
KOG2282\|consensus		708		99.81
TIGR01580		1235	narG respiratory nitrate reductase, alpha subunit.	99.78
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	99.71
COG1034		693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	99.71
PRK09130		687	NADH dehydrogenase subunit G; Validated	99.62
cd02773		375	MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s	99.3
COG1034		693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	98.71
cd02768		386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	98.64
TIGR01973		603	NuoG NADH-quinone oxidoreductase, chain G. This mo	98.48
PRK07860		797	NADH dehydrogenase subunit G; Validated	98.19
PRK08166		847	NADH dehydrogenase subunit G; Validated	97.76
cd00368		374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	97.74
COG3383		978	Uncharacterized anaerobic dehydrogenase [General f	97.64
PRK09129		776	NADH dehydrogenase subunit G; Validated	97.64
cd02772		414	MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma	97.62
PRK08493		819	NADH dehydrogenase subunit G; Validated	97.48
cd02766		501	MopB_3 The MopB_3 CD includes a group of related u	97.19
cd02761		415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	97.15
TIGR01591		671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	97.0
cd02750		461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	96.82
cd02771		472	MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The secon	96.8
cd02759		477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	96.73
cd02753		512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	96.59
cd02752		649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	96.57
cd02755		454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	96.14
cd02767		574	MopB_ydeP The MopB_ydeP CD includes a group of rel	96.06
PF00384		432	Molybdopterin: Molybdopterin oxidoreductase; Inter	95.44
cd02754		565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	95.2
cd02764		524	MopB_PHLH The MopB_PHLH CD includes a group of rel	95.1
TIGR03129		421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	94.66
PRK09939		759	putative oxidoreductase; Provisional	94.66
COG5013		1227	NarG Nitrate reductase alpha subunit [Energy produ	94.48
TIGR01701		743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	93.11
TIGR03479		912	DMSO_red_II_alp DMSO reductase family type II enzy	92.83
PRK00945		171	acetyl-CoA decarbonylase/synthase complex subunit	91.96
cd02762		539	MopB_1 The MopB_1 CD includes a group of related u	91.21
PRK15488		759	thiosulfate reductase PhsA; Provisional	90.8
TIGR01553		1009	formate-DH-alph formate dehydrogenase, alpha subun	90.73
cd02765		567	MopB_4 The MopB_4 CD includes a group of related u	90.56
TIGR00315		162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	89.31
PRK13532		830	nitrate reductase catalytic subunit; Provisional	87.13
cd02760		760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	86.81
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	85.68
cd02757		523	MopB_Arsenate-R This CD includes the respiratory a	84.7
cd02758		735	MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD	82.47
cd02751		609	MopB_DMSOR-like The MopB_DMSOR-like CD contains di	81.92
TIGR01706		830	NAPA periplasmic nitrate reductase, large subunit.	81.86
cd02763		679	MopB_2 The MopB_2 CD includes a group of related u	81.69

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.2e-53  Score=425.49  Aligned_cols=347  Identities=21%  Similarity=0.248  Sum_probs=294.7

Q ss_pred             cchhhhhhhHhhhhhcCCcEEEEEcCCCC-cccchhhh------cccHHHHHHHHccC--chHHhhhhhcCCCEEEeCCc
Q psy14128         16 FEAPLFNARIRKGYLTNELDVAYIGPKVD-LRYDYEHL------GESADLIKQLASGS--HPFSKKLSAAKKPLIVVGAD   86 (393)
Q Consensus        16 ~e~plln~RiRk~~~~~~~~v~~ig~~~d-~~~~~~~~------g~~~~~l~~i~~~~--~~~~~~l~r~~~PlI~~g~~   86 (393)
                      .|+.+-..||+|.  ++-|..|.+|+.++ |+..-..+      ..-++....+++|+  +.|+++.+|+++||||.|+.
T Consensus       252 ~e~~mr~~rikkt--kTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwdfvns~dRit~PlIR~~~~  329 (978)
T COG3383         252 IEAAMRETRIKKT--KTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWDFVNSRDRITKPLIREGDR  329 (978)
T ss_pred             hhhhhhhhhhccc--ceeccccCCceeEEEEecCceEEEeccCCCCCCCccceeeeceecccccCChhHhcccccccCCc
Confidence            4777778899985  36888999998665 66553222      22344577889997  78999999999999999999


Q ss_pred             eeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccccCCCCccchhhhhhhcc---
Q psy14128         87 MLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTDLRANY---  160 (393)
Q Consensus        87 ~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~~~~~~~~~~~~~~~~~~---  160 (393)
                      |.+++|+||+..+|++|.++  +||++++|++.|+++||||.|++|||+|+ |||||+|++.++|.++....+..++   
T Consensus       330 f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncsR~CqsPa~~gL~rTvG~g  409 (978)
T COG3383         330 FREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCSRYCQSPATDGLFRTVGSG  409 (978)
T ss_pred             eeeeeHHHHHHHHHHHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHHhccCCcccchhhccCcccccchheeecc
Confidence            99999999999999999754  58999999999999999999999999999 9999999999999876665555443   


Q ss_pred             cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--c--cc--cCCCHHHHHHHHc--
Q psy14128        161 LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD--Y--EH--LGESADLIKQLAS--  232 (393)
Q Consensus       161 ~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~--~--~~--lg~~~~~l~~l~~--  232 (393)
                      +.+.++++++.+|++|+||+||.++||++..|+|+|.+.+|+|+||+|+|......  .  +|  .|++...|.+++.  
T Consensus       410 ~dsgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~Avakyi  489 (978)
T COG3383         410 ADSGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTAVAKYI  489 (978)
T ss_pred             CCCCCHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence            45678999999999999999999999999999999987689999999997544422  2  33  3788887766531  


Q ss_pred             ---c---------------------------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHH
Q psy14128        233 ---G---------------------------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQ  270 (393)
Q Consensus       233 ---g---------------------------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~  270 (393)
                         |                                       +..+|+.|+++++..|+||+|++||..|++...++.|
T Consensus       490 ideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mGvTqh~~GsdTs~aisN  569 (978)
T COG3383         490 IDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMGVTQHSGGSDTSTAISN  569 (978)
T ss_pred             HhCCcchHHHHHhhcccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEccccccccCccHHHHHHH
Confidence               1                                       5778999999999999999999999999999999999


Q ss_pred             HHHHhCCCcccCCC-------ccccccccccC---------------------------------CCcHHHHhhc----c
Q psy14128        271 LAAKVTCESDHLGE-------SADLIKQLASG---------------------------------SHAFSKKLAA----A  306 (393)
Q Consensus       271 l~~~tg~~~~~~~~-------~~n~~G~~~~g---------------------------------g~~~~~~~~~----~  306 (393)
                      |++.|| ++++++.       ..|.+|+.++|                                 |++..+|+++    .
T Consensus       570 Lll~TG-N~Grpg~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~ePGl~~~~Mlea~~~G~  648 (978)
T COG3383         570 LLLLTG-NYGRPGAGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPREPGLDNPEMLEAIEEGK  648 (978)
T ss_pred             HHHHhc-ccCCCCCCcCcccccCccccccccccCcccCCCccccccHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhcCc
Confidence            999998 5665555       45777888777                                 7888888864    6


Q ss_pred             cCcEEEEcCCCC-CCCChhhHH-------------------------------------------HHhhhhhhccCCCCC
Q psy14128        307 KKPLIVVGADML-SRSDGAAVL-------------------------------------------ALVQQLAAKVTCESD  342 (393)
Q Consensus       307 ~~al~v~g~np~-~~p~~~~v~-------------------------------------------~~vq~~~~av~~~g~  342 (393)
                      .+++||+|+||. +.||.++|+                                           ||+|+++++.+|+|+
T Consensus       649 ~~amYv~GEd~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtNtERRiQrlykvleP~gd  728 (978)
T COG3383         649 LKAMYVVGEDPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTNTERRIQRLYKVLEPLGD  728 (978)
T ss_pred             eeEEEEecccceecCCChHHHHHHHhhcceEEeehhhhhcccccceEEeecCccccccCceechHHHHHHHHHHhccccC
Confidence            899999999998 999999887                                           999999999999999


Q ss_pred             CCcchHHHHHHHHHHHhccccCCCCCC
Q psy14128        343 VPCDWKVLNILQKAASQVAALDIGYKP  369 (393)
Q Consensus       343 ~~~dw~i~~~l~~~a~~~g~~d~g~~~  369 (393)
                      +||||+|   ++..|+++| .+|.|..
T Consensus       729 srpDW~I---iq~vA~~lG-~~wnY~h  751 (978)
T COG3383         729 SRPDWEI---IQEVANALG-AGWNYSH  751 (978)
T ss_pred             CCccHHH---HHHHHHHhc-CCCCCCC
Confidence            9999999   688999999 5788854

>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>PRK09130 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>PRK09939 putative oxidoreductase; Provisional	Back alignment and domain information

>PRK07860 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK09129 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	Back alignment and domain information

>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>KOG2282\|consensus	Back alignment and domain information

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type	Back alignment and domain information

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin	Back alignment and domain information

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins	Back alignment and domain information

>TIGR01706 NAPA periplasmic nitrate reductase, large subunit	Back alignment and domain information

>PRK13532 nitrate reductase catalytic subunit; Provisional	Back alignment and domain information

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins	Back alignment and domain information

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins	Back alignment and domain information

>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>PRK08166 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins	Back alignment and domain information

>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit	Back alignment and domain information

>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit	Back alignment and domain information

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit	Back alignment and domain information

>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>PRK15488 thiosulfate reductase PhsA; Provisional	Back alignment and domain information

>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins	Back alignment and domain information

>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes	Back alignment and domain information

>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases	Back alignment and domain information

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B	Back alignment and domain information

>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	Back alignment and domain information

>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins	Back alignment and domain information

>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional	Back alignment and domain information

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	Back alignment and domain information

>TIGR02164 torA trimethylamine-N-oxide reductase TorA	Back alignment and domain information

>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional	Back alignment and domain information

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins	Back alignment and domain information

>PRK14991 tetrathionate reductase subunit A; Provisional	Back alignment and domain information

>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>PRK08493 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>KOG2282\|consensus	Back alignment and domain information

>TIGR01580 narG respiratory nitrate reductase, alpha subunit	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>PRK09130 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>PRK07860 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK08166 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>PRK09129 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>PRK08493 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	Back alignment and domain information

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins	Back alignment and domain information

>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins	Back alignment and domain information

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	Back alignment and domain information

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins	Back alignment and domain information

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit	Back alignment and domain information

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins	Back alignment and domain information

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B	Back alignment and domain information

>PRK09939 putative oxidoreductase; Provisional	Back alignment and domain information

>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]	Back alignment and domain information

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit	Back alignment and domain information

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional	Back alignment and domain information

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>PRK15488 thiosulfate reductase PhsA; Provisional	Back alignment and domain information

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type	Back alignment and domain information

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit	Back alignment and domain information

>PRK13532 nitrate reductase catalytic subunit; Provisional	Back alignment and domain information

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins	Back alignment and domain information

>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins	Back alignment and domain information

>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>TIGR01706 NAPA periplasmic nitrate reductase, large subunit	Back alignment and domain information

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		393
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	5e-35
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	2e-16

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Length = 783	Back alignment and structure

 Score =  135 bits (342), Expect = 5e-35
 Identities = 47/319 (14%), Positives = 91/319 (28%), Gaps = 60/319 (18%)

Query: 77  KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKL 136
           K PL+     ++  +   A LAL + L        +V   +   A  E  +   +L   L
Sbjct: 307 KTPLVRKEGRLVEATWEEAFLALKEGLKE--ARGEEVGLYLAHDATLEEGLLASELAKAL 364

Query: 137 GSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKG 196
            +  L  +         T   A+      +    +AD  L++G +P  EAP+ + R+ + 
Sbjct: 365 KTPHLDFQ-------GRTAAPASLFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEF 416

Query: 197 YLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML 256
               +    Y                                +++      + +      
Sbjct: 417 VRDLKPPHRYNHGTPFADL--------------------QIKERMPRRTDKMALFAPYRA 456

Query: 257 SRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHA------FSKKLAAAKKPL 310
                AA              E    GE  +++  L              +    AK P+
Sbjct: 457 PLMKWAA------------IHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPV 504

Query: 311 IVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPG 370
           +++GA +L  +  A    L+ +                 +  +  AA+      +G  PG
Sbjct: 505 LILGAGVLQDTVAAERARLLAERK------------GAKVLAMTPAANARGLEAMGVLPG 552

Query: 371 TSAIREKPPKVLFLLGADE 389
                   P  L+      
Sbjct: 553 AKGASWDEPGALYAYYGFV 571

PyMOL of 3i9v

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Length = 783	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		393
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	100.0
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	100.0
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	100.0
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	100.0
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	100.0
4aay_A		845	AROA; oxidoreductase, rieske, iron sulfur, molybdo	99.97
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	99.97
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	99.97
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	99.97
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	99.96
1eu1_A		780	Dimethyl sulfoxide reductase; molybdenum, molybden	99.96
1tmo_A		829	TMAO reductase, trimethylamine N-oxide reductase;	99.96
2ivf_A		976	Ethylbenzene dehydrogenase alpha-subunit; anaerobi	99.95
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	99.94
1q16_A		1247	Respiratory nitrate reductase 1 alpha chain; membr	99.92
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	97.38
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	97.32
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	96.3
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	96.24
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	95.8
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	92.33
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	92.12
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	90.41
2ivf_A		976	Ethylbenzene dehydrogenase alpha-subunit; anaerobi	88.37
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	86.68
1eu1_A		780	Dimethyl sulfoxide reductase; molybdenum, molybden	84.43
1tmo_A		829	TMAO reductase, trimethylamine N-oxide reductase;	83.16

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*	Back alignment and structure

Probab=100.00  E-value=3.4e-35  Score=313.08  Aligned_cols=295  Identities=16%  Similarity=0.207  Sum_probs=238.7

Q ss_pred             chHHhhhh----hcCCCEEEeC--CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccH-HHHHHHHHHHHH-Hh
Q psy14128         67 HPFSKKLS----AAKKPLIVVG--ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLAD-AEAMVALKDLLN-KL  136 (393)
Q Consensus        67 ~~~~~~l~----r~~~PlI~~g--~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t-~E~~~~~~k~~~-~l  136 (393)
                      .++..+.+    |+++||+|.|  ++|++++|++|++.++++|.+.  +||+++++++.|+..+ +|+.|+++||++ .+
T Consensus        49 ~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~  128 (715)
T 2iv2_X           49 WDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVI  128 (715)
T ss_dssp             TGGGGCCCSSSCBCCSCEECCSTTSCCEECCHHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhcCccccchhccCCeEecCCCCCEEEeeHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhc
Confidence            45667777    9999999998  9999999999999999999754  5899999999998888 999999999999 79


Q ss_pred             CCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc
Q psy14128        137 GSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL  213 (393)
Q Consensus       137 Gt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~  213 (393)
                      |++|+++....|..+...++...+   ..+.++.|+++||+||+||+|+.+++|++..+++++. ++|+|||+|||+.+.
T Consensus       129 Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~t~  207 (715)
T 2iv2_X          129 GTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIE  207 (715)
T ss_dssp             CCCCEECSSCCSCCSSSCSHHHHHSCCSCSSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCH
T ss_pred             CCCcCCCCCccchhHHHHHHHhhcCCCCCCCCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHH-HCCCeEEEEcCCCCc
Confidence            999999877778765443433322   3456789999999999999999999999999999996 589999999998776


Q ss_pred             ccc--ccc----cCCCHHHHHHHHc---------------------------------------c-----HHHHHHHHHh
Q psy14128        214 RYD--YEH----LGESADLIKQLAS---------------------------------------G-----SHAFSKKLAA  243 (393)
Q Consensus       214 ~~~--~~~----lg~~~~~l~~l~~---------------------------------------g-----~~~~a~~l~~  243 (393)
                      +..  ..|    +|+|.+++.+|+.                                       |     ++++|+.|++
T Consensus       208 ta~~Ad~~l~irPGtD~aL~~al~~~ii~~~l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~  287 (715)
T 2iv2_X          208 TARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQ  287 (715)
T ss_dssp             HHHTCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHH
T ss_pred             hhHhhCEEeccCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence            633  333    4677665544321                                       1     5778999999


Q ss_pred             CCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC-------ccccccccccC---------------------
Q psy14128        244 AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE-------SADLIKQLASG---------------------  295 (393)
Q Consensus       244 a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~-------~~n~~G~~~~g---------------------  295 (393)
                      +++++|++|+++.++.++.....++.+|+..+| +++..+.       .+|++|+..+|                     
T Consensus       288 a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~ig~~Ggg~~~~~~~~n~~G~~~~g~~~~~~~~~~~~~~~~~~~~~  366 (715)
T 2iv2_X          288 AKSAAILWGMGVTQFYQGVETVRSLTSLAMLTG-NLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF  366 (715)
T ss_dssp             SSSEEEEEETTGGGSSSHHHHHHHHHHHHHHTT-CSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHH
T ss_pred             CCCeEEEEcccccccccHHHHHHHHHHHHHHhC-CCCCCCCccCCCccccccccccccCcCcCCCCccccCCCHHHHHHH
Confidence            999999999999999999999999999999998 5555443       45666653332                     


Q ss_pred             -------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH------------------------------
Q psy14128        296 -------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL------------------------------  327 (393)
Q Consensus       296 -------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~------------------------------  327 (393)
                                   |.++.+++    ++.+|++|++|.||+ ++||...++                              
T Consensus       367 ~~~~~~~~~p~~~g~~~~~~~~~i~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~d~~V~~d~~~teTa~~ADvvLP~~  446 (715)
T 2iv2_X          367 AKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPST  446 (715)
T ss_dssp             HHHTTCSCCCCSCCCCGGGHHHHHHTTSCCEEEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBC
T ss_pred             HHHhCCCcCCCCCCCCHHHHHHHHHcCCceEEEEeCCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhcCcEEccCC
Confidence                         23344444    457899999999998 999987655                              


Q ss_pred             -------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCC
Q psy14128        328 -------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGY  367 (393)
Q Consensus       328 -------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~  367 (393)
                                   +++|..+++++|+|++|+||+|   |..+|+++|. ++.|
T Consensus       447 ~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~d~~I---l~~La~~lg~-~~~~  495 (715)
T 2iv2_X          447 SWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQI---ISEIATRMGY-PMHY  495 (715)
T ss_dssp             CBTTBCEEEECTTSEEEEECCCSCCSSSCBCHHHH---HHHHHHHTTC-CCCC
T ss_pred             ccccCCCcEeCCCceEEEEecccCCCcccCCHHHH---HHHHHHHhCC-cCCc
Confidence                         7999999999999999999999   5777777774 3444

PyMOL of 2iv2

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*	Back alignment and structure

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}	Back alignment and structure

>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*	Back alignment and structure

>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*	Back alignment and structure

>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*	Back alignment and structure

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*	Back alignment and structure

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*	Back alignment and structure

>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		393
d2fug32		439	c.81.1.1 (3:247-685) NADH-quinone oxidoreductase c	5e-04

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]} Length = 439	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: NADH-quinone oxidoreductase chain 3, Nqo3
species: Thermus thermophilus [TaxId: 274]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 51/223 (22%)

Query: 163 NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGE 222
              +    +AD  L++G +P  EAP+ + R+ +              K   RY+  H   
Sbjct: 138 PASLEDLLQADFALVLG-DPTEEAPILHLRLSE---------FVRDLKPPHRYN--HGTP 185

Query: 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHL 282
            ADL            +++      + +           AA              E    
Sbjct: 186 FADL---------QIKERMPRRTDKMALFAPYRAPLMKWAA------------IHEVHRP 224

Query: 283 GESADLIKQLASGSHAFS------KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK 336
           GE  +++  L              +    AK P++++GA +L  +  A            
Sbjct: 225 GEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAA------------ 272

Query: 337 VTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPP 379
                        +  +  AA+      +G  PG        P
Sbjct: 273 ERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEP 315

PyMOL of d2fug32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		393
d1kqfa2		817	Formate dehydrogenase N, alpha subunit {Escherichi	100.0
d1h0ha2		812	Tungsten containing formate dehydrogenase, large s	100.0
d1ogya2		670	Periplasmic nitrate reductase alpha chain {Rhodoba	99.97
d1g8ka2		679	Arsenite oxidase large subunit {Alcaligenes faecal	99.97
d2jioa2		597	Periplasmic nitrate reductase alpha chain {Desulfo	99.97
d2iv2x2		564	Formate dehydrogenase H {Escherichia coli [TaxId:	99.97
d2fug32		439	NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus	99.97
d1eu1a2		622	Dimethylsulfoxide reductase (DMSO reductase) {Rhod	99.93
d1tmoa2		627	Trimethylamine N-oxide reductase {Shewanella massi	99.93
d1vlfm2		728	Transhydroxylase alpha subunit, AthL {Pelobacter a	99.9
d1y5ia2		1074	Respiratory nitrate reductase 1 alpha chain {Esche	99.88
d2fug32		439	NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus	97.13
d2iv2x2		564	Formate dehydrogenase H {Escherichia coli [TaxId:	94.58
d2ihta1		177	Carboxyethylarginine synthase {Streptomyces clavul	93.28
d1t9ba1		171	Acetohydroxyacid synthase catalytic subunit {Baker	92.95
d1zpda1		175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	91.96
d1ovma1		161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	91.91
d2djia1		177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	91.64
d1ybha1		179	Acetohydroxyacid synthase catalytic subunit {Thale	90.37
d1ozha1		179	Catabolic acetolactate synthase {Klebsiella pneumo	89.93
d2ez9a1		183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	89.56
d2ez9a1		183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	89.51
d1pvda1		179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	89.32
d2ji7a1		175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	88.73
d1zpda1		175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	88.02
d1q6za1		160	Benzoylformate decarboxylase {Pseudomonas putida [	87.32
d1ozha1		179	Catabolic acetolactate synthase {Klebsiella pneumo	87.01
d1ytla1		158	Acetyl-CoA decarbonylase/synthase complex epsilon	85.9
d1ybha1		179	Acetohydroxyacid synthase catalytic subunit {Thale	85.77
d2djia1		177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	85.69
d2jioa2		597	Periplasmic nitrate reductase alpha chain {Desulfo	84.91
d1h0ha2		812	Tungsten containing formate dehydrogenase, large s	84.56
d1pvda1		179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	84.39
d1kqfa2		817	Formate dehydrogenase N, alpha subunit {Escherichi	82.25

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase N, alpha subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-33  Score=296.13  Aligned_cols=296  Identities=11%  Similarity=0.081  Sum_probs=232.6

Q ss_pred             HHccC--chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhc--cCC------------CceEEEcCcccHH
Q psy14128         62 LASGS--HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKV--TCE------------SDVAGVVGSLADA  123 (393)
Q Consensus        62 i~~~~--~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~--~g~------------~sv~~l~g~~~t~  123 (393)
                      |.+|+  .++..+.+|+++||+|+  .++|++++|++||+.+|++|.+..  +++            ..++.+.++..++
T Consensus        59 C~KG~a~~~~vy~pdRL~~PL~R~rG~g~w~~ISWDEAld~IA~klk~ird~~g~e~~~~g~~~~~~~~~~~~~s~~~~n  138 (817)
T d1kqfa2          59 CPKGAGLLDYVNSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASN  138 (817)
T ss_dssp             CHHHHTTHHHHTCTTBCCSCEEECTTCSSCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCH
T ss_pred             CHhHHhHHHHhcCCchhcCCEEEecCCCCeeEcCHHHHHHHHHHHHHHHHHhhcccccccccccccccceeeEeecCCCc
Confidence            45553  67888999999999998  457999999999999999997643  332            2467789999999


Q ss_pred             HHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcC
Q psy14128        124 EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTN  200 (393)
Q Consensus       124 E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~  200 (393)
                      |+.|+.+||++.||++|+++..+.|..+...++..++   .++++..|+++||+||+||+|+.++||+...+++++.+++
T Consensus       139 e~~~l~~kf~~~lGt~nid~~a~~C~~~~~~gl~~~~G~g~~t~~~~D~~nad~Ili~G~Npae~hp~~~~~~~~a~k~~  218 (817)
T d1kqfa2         139 ETGMLTQKFARSLGMLAVDNQARVCHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNN  218 (817)
T ss_dssp             HHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCCccCCCCcccHHHHHHHHHHHccCCCCCCCHHHhccCcEEEEecCChhhcCchhhhhHHHHhhcc
Confidence            9999999999999999999988888765444444433   3467789999999999999999999999988888876678


Q ss_pred             CceEEEEcCCCCcccc--cc----ccCCCHHHHHHHHc------------------------------------------
Q psy14128        201 ELDVAYIGPKVDLRYD--YE----HLGESADLIKQLAS------------------------------------------  232 (393)
Q Consensus       201 gakiivi~p~~~~~~~--~~----~lg~~~~~l~~l~~------------------------------------------  232 (393)
                      |+|||||||+.+.+..  ..    ..|+|.+++..|+.                                          
T Consensus       219 GaklIvVDPR~t~tAa~AD~wlpIRPGTD~All~gmi~~Iie~~l~d~efv~~~Tna~~lv~~d~~f~dg~f~g~d~~~~  298 (817)
T d1kqfa2         219 DATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKR  298 (817)
T ss_dssp             CCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTT
T ss_pred             CCceeeeecccccccccchhhccccccchHHHHHHHHHHHHHCCCccHHHHHHHccccccccccccccccccccchhhhh
Confidence            9999999998776633  23    34777776544310                                          


Q ss_pred             ------------------------------------------------------cHHHHHHHHHh----CCCCEEEEcCc
Q psy14128        233 ------------------------------------------------------GSHAFSKKLAA----AKKPLIVVGAD  254 (393)
Q Consensus       233 ------------------------------------------------------g~~~~a~~l~~----a~~~~ii~G~~  254 (393)
                                                                            .++++|+.+++    +++.+|++|++
T Consensus       299 ~~d~~sw~~~~~~~g~~~~d~t~~~~~~vf~lLk~~~~~yTpE~va~itGvp~e~I~~lA~~~a~~~~~~k~~~i~~~~G  378 (817)
T d1kqfa2         299 QYDKSSWNYQLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALG  378 (817)
T ss_dssp             EECCTTSSBCBCTTSSBCBCTTSCSTTBHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEESHH
T ss_pred             hhcccccccccccccccccccccccchhHHHHHHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHHHhhcccceeEEeeccc
Confidence                                                                  14667787765    46789999999


Q ss_pred             cccccCHHHHHHHHHHHHHHhCCCcccCCCcc-------ccccccccC--------------------------------
Q psy14128        255 MLSRSDGAAVLALVQQLAAKVTCESDHLGESA-------DLIKQLASG--------------------------------  295 (393)
Q Consensus       255 ~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~-------n~~G~~~~g--------------------------------  295 (393)
                      ..||.++...+.++..|..++| +++..+.|.       |.+|+.++|                                
T Consensus       379 ~tqh~~G~~~ira~~~L~lL~G-niG~~GgGv~~lrG~~nvqG~~d~g~l~~~lpgy~~~p~~~~~~~~~~~~~~~p~~~  457 (817)
T d1kqfa2         379 WTQHTVGAQNIRTMAMIQLLLG-NMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKAT  457 (817)
T ss_dssp             HHSSTTHHHHHHHHHHHHHHHT-CTTCTTCSEEECCCBTTHHHHHHTTCSTTEEGGGEECCBTTCCSHHHHHHHHSCCCS
T ss_pred             cccCCCchHHHHHHHHHHHHhc-cCCCCCccccCcccccCcccccccccCCCCCCCcccCCchhhcchhhhccccCcccc
Confidence            9999999999999999999999 677777654       444443332                                


Q ss_pred             -------------------------------------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH
Q psy14128        296 -------------------------------------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL  327 (393)
Q Consensus       296 -------------------------------------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~  327 (393)
                                                                 +.+..+++    ++.+|++|++|.||+ +.||.+.++
T Consensus       458 ~~~~~~~~~~~~k~~~~~~k~~~g~~a~~e~~~g~~~lp~~~~~~~~~~~~~~~~~G~ik~l~v~g~NP~~s~pn~~~~~  537 (817)
T d1kqfa2         458 LADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVV  537 (817)
T ss_dssp             SSSCCCGGGGHHHHHHHHHHHHHGGGCCGGGGGGGGGSCCBSSCCCHHHHHHHHHTTCCCEEEEESCCHHHHSSSHHHHH
T ss_pred             ccccccccccccchhhHHhhhhccchhhhhhccCcccCccccccccHHHHHHhhhcCCeeEEEEeCCCHHHhCCCHHHHH
Confidence                                                       12222333    346899999999998 889877655


Q ss_pred             ------------------------------------------------------------HHhhhhhhccCCCCCCCcch
Q psy14128        328 ------------------------------------------------------------ALVQQLAAKVTCESDVPCDW  347 (393)
Q Consensus       328 ------------------------------------------------------------~~vq~~~~av~~~g~~~~dw  347 (393)
                                                                                  |++|...++++|||++|+||
T Consensus       538 ~aL~kLd~lVv~D~f~tETA~fa~~~~~~~~~~~~~~~~~divLPaa~~~Ek~Gt~tns~r~vq~~~kav~P~Geak~D~  617 (817)
T d1kqfa2         538 SCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDG  617 (817)
T ss_dssp             HHHTTCSEEEEEESBCCTTTTTTSCCGGGGCCCGGGCCCEEEEEEBCCGGGSCEEEECTTCEEEEECCCSCCSTTCBCHH
T ss_pred             HHHhcCCeEEEeeCCcChhHHhhhhccccccccccccccceEEecCCcccccCcceecCCCceeeeccccCCCCCCcCHH
Confidence                                                                        68999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14128        348 KVLNILQKAAS  358 (393)
Q Consensus       348 ~i~~~l~~~a~  358 (393)
                      +|+..|++...
T Consensus       618 ~I~~~La~rl~  628 (817)
T d1kqfa2         618 EILAGIYHHLR  628 (817)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99665555543

PyMOL of d1kqfa2

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}	Back information, alignment and structure

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}	Back information, alignment and structure

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure