Psyllid ID: psy14142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKLT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccHHHHHHHHHHcccccEccccccccHHHHHHHcccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mtyemsansqmdndvtpVYLAAQEGHLEVLKFLVLEAGgslyvrakdgmapihAAAQMGCLSCLkwmehrpavklt
Flexible Loop (DISEMBL)
mtyemsansqmdndVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKLT
Low Complexity Region (SEG)
MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKLT
Disordered region (IsUnstruct)
**************VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH*******
Disordered Region (DISOPRED)
MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV***
Disordered Region (DISEMBL)
**********MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKLT
Disordered Region (DISPRO)
****MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q63618	837	Espin OS=Rattus norvegicu	yes	N/A	0.842	0.076	0.538	5e-14
Q9ET47	871	Espin OS=Mus musculus GN=	yes	N/A	0.842	0.073	0.538	5e-14
B1AK53	854	Espin OS=Homo sapiens GN=	yes	N/A	0.842	0.074	0.523	2e-13
Q6ZVH7	1005	Espin-like protein OS=Hom	no	N/A	0.802	0.060	0.435	1e-08
Q3UYR4	1005	Espin-like protein OS=Mus	no	N/A	0.776	0.058	0.433	1e-07
Q09YJ3	1642	Cortactin-binding protein	N/A	N/A	0.907	0.042	0.422	3e-07
Q07DW4	1642	Cortactin-binding protein	N/A	N/A	0.907	0.042	0.422	3e-07
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.763	0.031	0.457	4e-07
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.763	0.030	0.457	4e-07
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.763	0.013	0.457	4e-07

>sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
           Y    N+Q +N  TP+YLA QEGHLEV K+LV E     ++RA+DGM P+HAAAQMG   
Sbjct: 161 YPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNP 220

Query: 63  CLKWM 67
            L W+
Sbjct: 221 VLVWL 225

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.
Rattus norvegicus (taxid: 10116)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
           Y    N+Q +N  TP+YLA QEGHLEV K+LV E     ++RA+DGM P+HAAAQMG   
Sbjct: 161 YPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNP 220

Query: 63  CLKWM 67
            L W+
Sbjct: 221 VLVWL 225

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|B1AK53|ESPN_HUMAN Espin OS=Homo sapiens GN=ESPN PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 42/65 (64%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
           Y    N+Q  N  TP+YLA QEGHLEV ++LV E G   + RA DGM P+HAAAQMG   
Sbjct: 161 YPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHARAHDGMTPLHAAAQMGHSP 220

Query: 63  CLKWM 67
            + W+
Sbjct: 221 VIVWL 225

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Homo sapiens (taxid: 9606)

>sp|Q6ZVH7|ESPNL_HUMAN Espin-like protein OS=Homo sapiens GN=ESPNL PE=2 SV=3

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           S N +  +  +P+YLA QEGHL + +FLV + G  +++RA DGM+ +HAAA  G  S + 
Sbjct: 163 SVNRRTRSGASPLYLACQEGHLHLAQFLVKDCGADVHLRALDGMSALHAAAARGHYSLVV 222

Query: 66  WM 67
           W+
Sbjct: 223 WL 224

Homo sapiens (taxid: 9606)

>sp|Q3UYR4|ESPNL_MOUSE Espin-like protein OS=Mus musculus GN=Espnl PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N +  +  +P+YLA QEGHL + +FLV + G  + +RA DGM+ +HAAA  G  S + W+
Sbjct: 165 NQRTCSGASPLYLACQEGHLHLAQFLVKDCGADVRLRALDGMSSLHAAAAHGHYSLVVWL 224

Mus musculus (taxid: 10090)

>sp|Q09YJ3|CTTB2_MUNMU Cortactin-binding protein 2 OS=Muntiacus muntjak GN=CTTNBP2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + Y+ + N   D   TP+YLA + G+ E +K L LEAG    V+ +DG  PIHAA   G 
Sbjct: 790 IAYDANINHAADGGQTPLYLACKNGNKECIKLL-LEAGTDRSVKTRDGWTPIHAAVDTGN 848

Query: 61  LSCLK-WMEHR 70
           +  LK  M HR
Sbjct: 849 VDSLKLLMYHR 859

Muntiacus muntjak (taxid: 9888)

>sp|Q07DW4|CTTB2_MUNRE Cortactin-binding protein 2 OS=Muntiacus reevesi GN=CTTNBP2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + Y+ + N   D   TP+YLA + G+ E +K L LEAG    V+ +DG  PIHAA   G 
Sbjct: 790 IAYDANINHAADGGQTPLYLACKNGNKECIKLL-LEAGTDRSVKTRDGWTPIHAAVDTGN 848

Query: 61  LSCLK-WMEHR 70
           +  LK  M HR
Sbjct: 849 VDSLKLLMYHR 859

Muntiacus reevesi (taxid: 9886)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           + Y  + N+Q     TP+Y+AAQE HLEV+KFL LE G +  V  +DG  P+  A Q G
Sbjct: 94  VNYGANVNAQSQKGFTPLYMAAQENHLEVVKFL-LENGANQNVATEDGFTPLAVALQQG 151

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           + Y  + N+Q     TP+Y+AAQE HLEV+KFL LE G +  V  +DG  P+  A Q G
Sbjct: 98  VNYGANVNAQSQKGFTPLYMAAQENHLEVVKFL-LENGANQNVATEDGFTPLAVALQQG 155

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           +T   + N+Q  N  TP+Y+AAQE HLEV+KFL L+ G S  +  +DG  P+  A Q G
Sbjct: 127 VTNGANVNAQSQNGFTPLYMAAQENHLEVVKFL-LDNGASQSLATEDGFTPLAVALQQG 184

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242013797	834	forked protein, putative [Pediculus huma	0.868	0.079	0.909	2e-30
189240280	1371	PREDICTED: similar to forked CG5424-PB [	0.868	0.048	0.878	3e-29
157112490	779	forked protein [Aedes aegypti] gi|108878	0.815	0.079	0.935	6e-29
328723047	939	PREDICTED: hypothetical protein LOC10016	0.842	0.068	0.921	6e-29
195165519	1671	GL19882 [Drosophila persimilis] gi|19410	0.828	0.037	0.920	1e-28
270011590	1273	hypothetical protein TcasGA2_TC005627 [T	0.815	0.048	0.919	2e-28
320542263	1544	forked, isoform I [Drosophila melanogast	0.828	0.040	0.920	2e-28
195447980	1766	GK25809 [Drosophila willistoni] gi|19416	0.828	0.035	0.920	2e-28
28571234	1509	forked, isoform C [Drosophila melanogast	0.828	0.041	0.920	2e-28
195567349	829	GD17341 [Drosophila simulans] gi|1942046	0.828	0.075	0.920	2e-28

>gi|242013797|ref|XP_002427587.1| forked protein, putative [Pediculus humanus corporis] gi|212512002|gb|EEB14849.1| forked protein, putative [Pediculus humanus corporis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/66 (90%), Positives = 65/66 (98%)

Query: 2  TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          T E+SAN+QMDNDVTPVYLAAQEGHLEVLK+LVLEAGGSLYVRAKDGMAP+HAAAQMGCL
Sbjct: 32 TSELSANTQMDNDVTPVYLAAQEGHLEVLKYLVLEAGGSLYVRAKDGMAPVHAAAQMGCL 91

Query: 62 SCLKWM 67
          +CLKWM
Sbjct: 92 TCLKWM 97

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240280|ref|XP_001812682.1| PREDICTED: similar to forked CG5424-PB [Tribolium castaneum]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/66 (87%), Positives = 65/66 (98%)

Query: 2   TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           T ++SAN+QMDNDVTPVYLAAQEGHL+VLKFLVLEAGGSLYVRAKDGMAPIHAA+QMGCL
Sbjct: 543 TPDLSANTQMDNDVTPVYLAAQEGHLDVLKFLVLEAGGSLYVRAKDGMAPIHAASQMGCL 602

Query: 62  SCLKWM 67
           +C+KWM
Sbjct: 603 NCVKWM 608

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112490|ref|XP_001657558.1| forked protein [Aedes aegypti] gi|108878062|gb|EAT42287.1| AAEL006165-PA, partial [Aedes aegypti]

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query: 6  SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CLK
Sbjct: 4  SANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCLK 63

Query: 66 WM 67
          WM
Sbjct: 64 WM 65

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723047|ref|XP_001946272.2| PREDICTED: hypothetical protein LOC100163469 [Acyrthosiphon pisum]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 63/64 (98%)

Query: 4   EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
           + SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAP+HAAAQMGCL+C
Sbjct: 46  KFSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPVHAAAQMGCLNC 105

Query: 64  LKWM 67
           LKWM
Sbjct: 106 LKWM 109

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195165519|ref|XP_002023586.1| GL19882 [Drosophila persimilis] gi|194105720|gb|EDW27763.1| GL19882 [Drosophila persimilis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 5   MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct: 583 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 642

Query: 65  KWM 67
           KWM
Sbjct: 643 KWM 645

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011590|gb|EFA08038.1| hypothetical protein TcasGA2_TC005627 [Tribolium castaneum]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/62 (91%), Positives = 62/62 (100%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           SAN+QMDNDVTPVYLAAQEGHL+VLKFLVLEAGGSLYVRAKDGMAPIHAA+QMGCL+C+K
Sbjct: 449 SANTQMDNDVTPVYLAAQEGHLDVLKFLVLEAGGSLYVRAKDGMAPIHAASQMGCLNCVK 508

Query: 66  WM 67
           WM
Sbjct: 509 WM 510

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320542263|ref|NP_001188659.1| forked, isoform I [Drosophila melanogaster] gi|318069450|gb|ADV37741.1| forked, isoform I [Drosophila melanogaster]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 5   MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct: 177 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 236

Query: 65  KWM 67
           KWM
Sbjct: 237 KWM 239

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447980|ref|XP_002071456.1| GK25809 [Drosophila willistoni] gi|194167541|gb|EDW82442.1| GK25809 [Drosophila willistoni]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 5   MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct: 669 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 728

Query: 65  KWM 67
           KWM
Sbjct: 729 KWM 731

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28571234|ref|NP_788919.1| forked, isoform C [Drosophila melanogaster] gi|28381638|gb|AAO41690.1| forked, isoform C [Drosophila melanogaster]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 5   MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct: 142 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 201

Query: 65  KWM 67
           KWM
Sbjct: 202 KWM 204

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567349|ref|XP_002107224.1| GD17341 [Drosophila simulans] gi|194204628|gb|EDX18204.1| GD17341 [Drosophila simulans]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 5   MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct: 695 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 754

Query: 65  KWM 67
           KWM
Sbjct: 755 KWM 757

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
FB|FBgn0262111	1918	f "forked" [Drosophila melanog	0.828	0.032	0.920	4.7e-26
RGD|620652	837	Espn "espin" [Rattus norvegicu	0.855	0.077	0.538	5.3e-13
MGI|MGI:1861630	871	Espn "espin" [Mus musculus (ta	0.855	0.074	0.538	5.6e-13
UNIPROTKB|B1AK53	854	ESPN "Espin" [Homo sapiens (ta	0.855	0.076	0.523	1.5e-12
UNIPROTKB|F1RIL6	694	LOC100738281 "Uncharacterized	0.789	0.086	0.533	9.9e-12
UNIPROTKB|I3LT50	839	I3LT50 "Uncharacterized protei	0.789	0.071	0.533	1.3e-11
ZFIN|ZDB-GENE-081105-173	1476	espn "espin" [Danio rerio (tax	0.789	0.040	0.533	1.6e-11
UNIPROTKB|E2R0L1	833	ESPN "Uncharacterized protein"	0.789	0.072	0.533	1.6e-11
UNIPROTKB|J9P3M2	876	ESPN "Uncharacterized protein"	0.789	0.068	0.533	1.8e-11
UNIPROTKB|E1BHC8	823	E1BHC8 "Uncharacterized protei	0.657	0.060	0.54	1.2e-08

FB|FBgn0262111 f "forked" [Drosophila melanogaster (taxid:7227)]

 Score = 310 (114.2 bits), Expect = 4.7e-26, P = 4.7e-26
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query:     5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
             +SAN+QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA+DGMAPIHAA+QMGCL CL
Sbjct:   555 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 614

Query:    65 KWM 67
             KWM
Sbjct:   615 KWM 617

GO:0003779 "actin binding" evidence=ISS;NAS

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP

GO:0031941 "filamentous actin" evidence=IDA

GO:0035017 "cuticle pattern formation" evidence=IMP

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

RGD|620652 Espn "espin" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:     3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
             Y    N+Q +N  TP+YLA QEGHLEV K+LV E     ++RA+DGM P+HAAAQMG   
Sbjct:   161 YPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNP 220

Query:    63 CLKWM 67
              L W+
Sbjct:   221 VLVWL 225

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0005903 "brush border" evidence=IDA

GO:0007015 "actin filament organization" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO;IDA;TAS

GO:0017124 "SH3 domain binding" evidence=IPI

GO:0030046 "parallel actin filament bundle assembly" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031941 "filamentous actin" evidence=IDA

GO:0032420 "stereocilium" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=ISO

GO:0032426 "stereocilium bundle tip" evidence=ISO

GO:0043197 "dendritic spine" evidence=IEA

GO:0051015 "actin filament binding" evidence=IDA

GO:0051017 "actin filament bundle assembly" evidence=ISO;NAS

GO:0051491 "positive regulation of filopodium assembly" evidence=ISO

GO:0051494 "negative regulation of cytoskeleton organization" evidence=ISO

MGI|MGI:1861630 Espn "espin" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:     3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
             Y    N+Q +N  TP+YLA QEGHLEV K+LV E     ++RA+DGM P+HAAAQMG   
Sbjct:   161 YPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNP 220

Query:    63 CLKWM 67
              L W+
Sbjct:   221 VLVWL 225

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005902 "microvillus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;TAS

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0030046 "parallel actin filament bundle assembly" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031941 "filamentous actin" evidence=ISO

GO:0032421 "stereocilium bundle" evidence=IDA

GO:0032426 "stereocilium bundle tip" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0051015 "actin filament binding" evidence=ISO

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0051491 "positive regulation of filopodium assembly" evidence=IGI;IPI

GO:0051494 "negative regulation of cytoskeleton organization" evidence=IDA

GO:0051639 "actin filament network formation" evidence=NAS

UNIPROTKB|B1AK53 ESPN "Espin" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/65 (52%), Positives = 42/65 (64%)

Query:     3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
             Y    N+Q  N  TP+YLA QEGHLEV ++LV E G   + RA DGM P+HAAAQMG   
Sbjct:   161 YPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHARAHDGMTPLHAAAQMGHSP 220

Query:    63 CLKWM 67
              + W+
Sbjct:   221 VIVWL 225

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030046 "parallel actin filament bundle assembly" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051494 "negative regulation of cytoskeleton organization" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0031941 "filamentous actin" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0017124 "SH3 domain binding" evidence=ISS

GO:0005903 "brush border" evidence=ISS

UNIPROTKB|F1RIL6 LOC100738281 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
             N+Q  N  TP+YLA QEGHLEV ++LV E G   ++ A DGM P+HAAAQMG    + W+
Sbjct:     5 NAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWL 64

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|I3LT50 I3LT50 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
             N+Q  N  TP+YLA QEGHLEV ++LV E G   ++ A DGM P+HAAAQMG    + W+
Sbjct:   166 NAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWL 225

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-081105-173 espn "espin" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
             N Q  N  TP+YLA QEGHLEV+++LV + G    +RA DGM P+HAAAQMG  + + W+
Sbjct:   166 NFQTKNGATPLYLACQEGHLEVVQYLVKDCGAEPSIRANDGMTPLHAAAQMGHNTVIVWL 225

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2R0L1 ESPN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
             N+Q  N  TP+YLA QEGHLEV ++LV E G   +  A DGM P+HAAAQMG    + W+
Sbjct:   166 NAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHASAHDGMTPLHAAAQMGHSPVIVWL 225

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P3M2 ESPN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
             N+Q  N  TP+YLA QEGHLEV ++LV E G   +  A DGM P+HAAAQMG    + W+
Sbjct:   166 NAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHASAHDGMTPLHAAAQMGHSPVIVWL 225

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E1BHC8 E1BHC8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query:     8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
             N+Q  N  TP+YLA QEGHLEV ++LV E     ++ A DGM P+HAAA+
Sbjct:   166 NAQTKNGATPLYLACQEGHLEVTQYLVQECDADPHLSAHDGMTPLHAAAR 215

GO:0051494 "negative regulation of cytoskeleton organization" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0030046 "parallel actin filament bundle assembly" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ET47	ESPN_MOUSE	No assigned EC number	0.5384	0.8421	0.0734	yes	N/A
Q63618	ESPN_RAT	No assigned EC number	0.5384	0.8421	0.0764	yes	N/A
B1AK53	ESPN_HUMAN	No assigned EC number	0.5230	0.8421	0.0749	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 4e-11
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          N++ ++  TP++LAA  GHLEV+K L LE G  +  +  DG  P+H AA+ G L  +K +
Sbjct: 1  NARDEDGRTPLHLAASNGHLEVVKLL-LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.9 bits (117), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 6  SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
            N++ ++  TP++LAA+ GHLE++K L LE G  +  R KDG  P+H AA+ G L  +K
Sbjct: 32 DVNAKDNDGRTPLHLAAKNGHLEIVKLL-LEKGADVNARDKDGNTPLHLAARNGNLDVVK 90

Query: 66 W 66
           
Sbjct: 91 L 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 4e-09
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 4  EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
          E  A+  + +  T ++LAA+ G+LE++K L LE G  +  + KDG   +H AA+ G L  
Sbjct: 18 EKGADVNLGDTDTALHLAARNGNLEIVKLL-LEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 64 LKW-MEHRPAVKLT 76
          +K  +EH   + L 
Sbjct: 77 VKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
             N++  +  TP++LAA+ G+L+V+K L L+ G  +  R KDG  P+H AA+ G L  +K
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLL-LKHGADVNARDKDGRTPLHLAAKNGHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 9e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
          T ++ AA  G LE++K+L LE G  +    +DG   +H AA+ G L  LK 
Sbjct: 3  TALHKAAISGRLELVKYL-LEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
           Y    N + DN   P+++A +    +++K L+ E G    V+  +G +P+H AA+ G  +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDYA 204

Query: 63  CLKWM 67
           C+K +
Sbjct: 205 CIKLL 209

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 19 YLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
          +LAA+ G+LE++K L LE G  + +   D    +H AA+ G L  +K 
Sbjct: 2  HLAAKNGNLELVKLL-LEKGADVNLGDTD--TALHLAARNGNLEIVKL 46

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
            N + ++  TP++ AA  G  ++++ L LEAG     R   G+  +  AA+ G +  +K 
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELL-LEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 67  MEHR 70
           +  +
Sbjct: 199 LLDK 202

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 5  MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
          +  N+   N  TP++LAA+ G LE++++L L+ G  L +R  DG+  +  A
Sbjct: 7  IDLNATDGNGNTPLHLAAKYGALELVQWL-LKPGVDLNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG4412|consensus	226		99.81
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.79
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG4412|consensus	226		99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.73
PHA02795	437	ankyrin-like protein; Provisional	99.73
PHA02743	166	Viral ankyrin protein; Provisional	99.72
KOG4214|consensus	117		99.71
PHA02946	446	ankyin-like protein; Provisional	99.7
KOG0509|consensus	600		99.7
PHA02741	169	hypothetical protein; Provisional	99.7
PHA02875	413	ankyrin repeat protein; Provisional	99.7
PHA02989	494	ankyrin repeat protein; Provisional	99.69
KOG0509|consensus	600		99.68
PHA02878	477	ankyrin repeat protein; Provisional	99.68
PHA03095	471	ankyrin-like protein; Provisional	99.68
PHA02791	284	ankyrin-like protein; Provisional	99.67
PHA02743	166	Viral ankyrin protein; Provisional	99.67
PHA02884	300	ankyrin repeat protein; Provisional	99.67
KOG0512|consensus	228		99.67
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.66
PHA03100	480	ankyrin repeat protein; Provisional	99.66
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.66
PHA02874	434	ankyrin repeat protein; Provisional	99.65
PHA02874	434	ankyrin repeat protein; Provisional	99.65
PHA02741	169	hypothetical protein; Provisional	99.65
PHA02791	284	ankyrin-like protein; Provisional	99.64
PHA02798	489	ankyrin-like protein; Provisional	99.64
PHA02798	489	ankyrin-like protein; Provisional	99.64
PHA02878	477	ankyrin repeat protein; Provisional	99.64
PHA02730	672	ankyrin-like protein; Provisional	99.63
KOG4177|consensus	1143		99.63
PHA02859	209	ankyrin repeat protein; Provisional	99.63
KOG0508|consensus	615		99.62
KOG0515|consensus	752		99.6
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.6
PHA03095	471	ankyrin-like protein; Provisional	99.6
PHA03100	480	ankyrin repeat protein; Provisional	99.59
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.57
PHA02859	209	ankyrin repeat protein; Provisional	99.57
PHA02875	413	ankyrin repeat protein; Provisional	99.56
KOG0195|consensus	448		99.56
PHA02946	446	ankyin-like protein; Provisional	99.56
PHA02876	682	ankyrin repeat protein; Provisional	99.56
PHA02989	494	ankyrin repeat protein; Provisional	99.55
KOG0510|consensus	929		99.53
PHA02917	661	ankyrin-like protein; Provisional	99.53
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.52
KOG4177|consensus	1143		99.52
PHA02730	672	ankyrin-like protein; Provisional	99.52
KOG0514|consensus	452		99.51
KOG0195|consensus	448		99.5
PHA02736	154	Viral ankyrin protein; Provisional	99.48
KOG0510|consensus	929		99.48
PHA02876	682	ankyrin repeat protein; Provisional	99.47
KOG0502|consensus	296		99.46
PHA02884	300	ankyrin repeat protein; Provisional	99.45
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG0514|consensus	452		99.45
KOG0508|consensus	615		99.44
PHA02792	631	ankyrin-like protein; Provisional	99.42
KOG0502|consensus	296		99.41
KOG0506|consensus	622		99.4
PHA02917	661	ankyrin-like protein; Provisional	99.39
KOG0505|consensus	527		99.39
PHA02792	631	ankyrin-like protein; Provisional	99.37
PHA02795	437	ankyrin-like protein; Provisional	99.35
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.34
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.3
KOG0512|consensus	228		99.3
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
KOG1710|consensus	396		99.26
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.24
KOG0818|consensus	669		99.23
KOG0705|consensus	749		99.22
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.21
PF13606	30	Ank_3: Ankyrin repeat	99.19
KOG0505|consensus	527		99.19
KOG0507|consensus	854		99.18
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.18
PF13606	30	Ank_3: Ankyrin repeat	99.17
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.11
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.11
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.1
KOG0783|consensus	1267		99.1
KOG3676|consensus	782		99.09
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.09
KOG4214|consensus	117		99.08
KOG0522|consensus	560		99.07
KOG0507|consensus	854		99.06
KOG2384|consensus	223		99.0
KOG1710|consensus	396		98.98
KOG0515|consensus	752		98.97
KOG0511|consensus	516		98.95
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.94
KOG3676|consensus	782		98.9
KOG4369|consensus	2131		98.54
KOG0506|consensus	622		98.53
KOG0783|consensus	1267		98.47
KOG0521|consensus	785		98.35
KOG0818|consensus	669		98.18
KOG0511|consensus	516		98.15
KOG0782|consensus	1004		98.09
KOG0782|consensus	1004		98.04
KOG4369|consensus	2131		98.01
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.98
KOG0520|consensus	975		97.92
KOG0521|consensus	785		97.88
KOG3609|consensus	822		97.81
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.8
KOG0520|consensus	975		97.8
KOG2505|consensus	591		97.77
KOG0522|consensus	560		97.76
KOG2384|consensus	223		97.14
KOG0705|consensus	749		96.67
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.97
KOG2505|consensus	591		94.52
KOG3609|consensus	822		93.35
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.8
KOG1709|consensus	271		90.66
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.24

>KOG4412|consensus

Probab=99.81  E-value=1.2e-19  Score=88.46  Aligned_cols=69  Identities=26%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++.+|.+|+.||||||+|+..|+.++++.|+.+.+++++...+.|+|+||+|+..|.++++.+|+.+|+
T Consensus        62 nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga  130 (226)
T KOG4412|consen   62 NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA  130 (226)
T ss_pred             CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCC
Confidence            456777788888888888888888888888755588888888888888888888888888888888774

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.79  E-value=1.8e-18  Score=70.61  Aligned_cols=54  Identities=35%  Similarity=0.638  Sum_probs=45.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME   68 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   68 (76)
                      |.|++|+|+..|+.+++++++ +.+.+++.+|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll-~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLL-EHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHH-HTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999998 789999999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.77  E-value=9.4e-19  Score=71.93  Aligned_cols=53  Identities=34%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             ccc-cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy14142          2 TYE-MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA   55 (76)
Q Consensus         2 ~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a   55 (76)
                      ..+ .+++.+|..|.||||+|+..|+.+++++|+ ..+++++.++..|.||+|+|
T Consensus         3 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    3 EHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             ccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            455 889999999999999999999999999999 99999999999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.5e-17  Score=73.86  Aligned_cols=58  Identities=33%  Similarity=0.501  Sum_probs=54.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |.+|+|+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   83 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLL-ENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGA   83 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            789999999999999999998 9999999999999999999999999999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4412|consensus

Probab=99.74  E-value=1e-17  Score=81.78  Aligned_cols=68  Identities=28%  Similarity=0.490  Sum_probs=59.3

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |+++|.....|.|+||||+..+..++.++|+ +.|+.++.+|..|+||||-|+.-|..+++++|+..++
T Consensus        96 ~advna~tn~G~T~LHyAagK~r~eIaqlLl-e~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a  163 (226)
T KOG4412|consen   96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLL-EKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA  163 (226)
T ss_pred             CCCcceecCCCcceehhhhcCChhhHHHHHH-hcCCCCcccccccCchhHHHHhccchhhHHHHHhcCC
Confidence            7888888888889999998888888888888 8888888888888899998888888888888888774

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=4.6e-17  Score=78.59  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++.++ ..|.||||+|+..++.+++++|+...+++++.++..|.||||+|+..++.+++++|+.+++
T Consensus        79 ~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         79 EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             HcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4688999998 4899999999999999999999833589999999999999999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.73  E-value=4.2e-17  Score=88.75  Aligned_cols=70  Identities=21%  Similarity=0.343  Sum_probs=65.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC--------HHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC--------LSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~--------~~~~~~l~~~~~   72 (76)
                      ++|+++|.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+        .+++++|++.++
T Consensus       209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL-~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL-ENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            579999999999999999999999999999998 9999999999999999999999884        689999998765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=9.8e-17  Score=78.39  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=40.9

Q ss_pred             cccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|+++|.++ ..|.||||+|+..++.+++++|+...+++++.++..|.||||+|...++.+++++|++++
T Consensus        82 ~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         82 MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            455555555 356666666666666666666552245566666666666666666666666666666554

>KOG4214|consensus

Probab=99.71  E-value=5.5e-17  Score=71.75  Aligned_cols=68  Identities=28%  Similarity=0.453  Sum_probs=61.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      |.|+|.. ..|++|+|+|+..|-.+++++++ .-|++++.+|..|.|||..|.+.||.++|++|+++|+.
T Consensus        25 g~nVn~~-~ggR~plhyAAD~GQl~ilefli-~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   25 GLNVNEI-YGGRTPLHYAADYGQLSILEFLI-SIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGAD   92 (117)
T ss_pred             cccHHHH-hCCcccchHhhhcchHHHHHHHH-HhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcc
Confidence            3444433 37899999999999999999998 99999999999999999999999999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=99.70  E-value=1.6e-16  Score=87.20  Aligned_cols=70  Identities=14%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG--CLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~--~~~~~~~l~~~~~   72 (76)
                      ++|+++|.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..+  ..+++++|+++|+
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL-~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            578999999999999999999999999999998 899999999999999999998765  4788999998875

>KOG0509|consensus

Probab=99.70  E-value=7.6e-17  Score=89.48  Aligned_cols=68  Identities=26%  Similarity=0.344  Sum_probs=38.3

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |.+++..|.+|.++||||+.++..+++++|+ +.|++++..+ .-+.||||+|+++|+..++.+|+++|+
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA  136 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA  136 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence            4445555555555555555555555555555 5555555554 335555555555555555555555553

>PHA02741 hypothetical protein; Provisional

Probab=99.70  E-value=3.6e-16  Score=76.56  Aligned_cols=66  Identities=20%  Similarity=0.327  Sum_probs=53.9

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHhcCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGH----LEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      |++++.++..|.||||+|+..++    .+++++|+ ..|++++.++. .|.||||+|+..++.+++++|+..
T Consensus        50 ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll-~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~  120 (169)
T PHA02741         50 AAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI-ELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQ  120 (169)
T ss_pred             hhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH-HcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            56778888888888888888887    46778887 77888888774 788888888888888888888864

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.70  E-value=2.4e-16  Score=85.60  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..++.++.++..|.||||+|+..|+.+++++|++.|+
T Consensus       123 ~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga  192 (413)
T PHA02875        123 ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA  192 (413)
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            457778888888888888888888888888887 7788888888888888888888888888888887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.69  E-value=2.4e-16  Score=87.33  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=64.6

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .++++|.+|..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.++++.|++.+.
T Consensus       245 ~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL-~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        245 KYIKINKKDKKGFNPLLISAKVDNYEAFNYLL-KLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            46789999999999999999999999999998 9999999999999999999999999999999988653

>KOG0509|consensus

Probab=99.68  E-value=1.4e-16  Score=88.40  Aligned_cols=70  Identities=26%  Similarity=0.457  Sum_probs=63.3

Q ss_pred             CccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          1 MTYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         1 ~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +++|+++|... .-+.||||||+++|+..++.+|+ +.|++++.+|.+|.+|+|+|++.++..++.+|+.++
T Consensus        98 i~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl-qhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~  168 (600)
T KOG0509|consen   98 ISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL-QHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG  168 (600)
T ss_pred             HHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH-HcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc
Confidence            36789999887 56789999999999999999998 999999999999999999999999999999988876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.68  E-value=4.3e-16  Score=85.99  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             cccCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDN-DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++..+.. |.||||+|+..++.+++++|+ ..|++++..+..|.||||.|+..++.+++++|++.|
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            46666666666 677777777777777777666 666666666666777777777666777777666655

>PHA03095 ankyrin-like protein; Provisional

Probab=99.68  E-value=4.7e-16  Score=85.44  Aligned_cols=69  Identities=16%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|+++|.++..|.||||+|+..|+.+++++|+ ..|++++.++..|.||+|+|+..++.+++++|++.++
T Consensus       246 ~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL-~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~  314 (471)
T PHA03095        246 AGISINARNRYGQTPLHYAAVFNNPRACRRLI-ALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNP  314 (471)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Confidence            56777888888888888888888888888887 7788888888888888888888888888888777653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.67  E-value=7.1e-16  Score=80.64  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHhC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG-MAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g-~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .|++++.++..|.||||+|+..++.+++++|+ ..|++++.++..| .||||+|+..++.+++++|++.
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~  150 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE  150 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc
Confidence            45666666666667777777666666666666 6666655555444 3566666666666666666554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.67  E-value=6e-16  Score=75.63  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHH---HHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLE---VLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      .+.+++.++..|+||||+|+..+..+   ++++|+ ..|++++.++ ..|.||||+|+..++.+++++|+.
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGADINARELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            46677888999999999999998765   478887 8999999998 589999999999999999999995

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=9.6e-16  Score=80.53  Aligned_cols=70  Identities=19%  Similarity=0.361  Sum_probs=63.0

Q ss_pred             ccccCcccCC----CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQM----DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|+++|..+    ..|.||||+|+..++.+++++|+ ..|++++.++ ..|.||||.|+..++.+++++|++.|+
T Consensus        54 ~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA  128 (300)
T PHA02884         54 KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA  128 (300)
T ss_pred             HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            5789998874    58999999999999999999998 8999999864 579999999999999999999999875

>KOG0512|consensus

Probab=99.67  E-value=3.1e-16  Score=76.35  Aligned_cols=65  Identities=23%  Similarity=0.430  Sum_probs=62.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|.+|.++.||||-|+.+++.+++..|+ ..|++++.+...|.||||.|+..++.+++.+|+++|+
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga  154 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA  154 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchhHHHHHHhccC
Confidence            7889999999999999999999999998 9999999999999999999999999999999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.66  E-value=7.5e-16  Score=89.38  Aligned_cols=70  Identities=14%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|+++|..|..|.||||+|+..|+.++++.|+ ..|++++.++..|.||||+|+..|+.+++++|++.++
T Consensus       546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~  615 (823)
T PLN03192        546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS  615 (823)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc
Confidence            468999999999999999999999999999998 8999999999999999999999999999998887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.66  E-value=1e-15  Score=84.32  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||+++|...++.+++++|+++|+
T Consensus       238 ~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        238 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL-DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            468899999999999999999999999999998 9999999999999999999999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.66  E-value=1.1e-15  Score=87.12  Aligned_cols=69  Identities=25%  Similarity=0.406  Sum_probs=65.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ..|+++|.+|..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++++
T Consensus       103 ~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  171 (664)
T PTZ00322        103 TGGADPNCRDYDGRTPLHIACANGHVQVVRVLL-EFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS  171 (664)
T ss_pred             HCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCC
Confidence            468899999999999999999999999999998 899999999999999999999999999999999883

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.5e-15  Score=83.07  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=32.6

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++.+
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLF-EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHH-hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            4444444444555555555555555554444 444444444444445555544444444444444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.5e-15  Score=83.04  Aligned_cols=70  Identities=27%  Similarity=0.544  Sum_probs=66.2

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ ..|+.++..+..|.||||+|+..|+.+++++|++.++
T Consensus       145 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            468899999999999999999999999999998 8999999999999999999999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.65  E-value=1.2e-15  Score=74.74  Aligned_cols=71  Identities=18%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             ccccCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMD-NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.++. .|.||||+|+..++.+++++|+...+++++.++..|.||||+|...++.+++++|+++++
T Consensus        85 ~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         85 ELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            35889999885 899999999999999999999833689999999999999999999999999999988654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.64  E-value=2.6e-15  Score=78.55  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=54.6

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|++++..  .+.||||+|+..++.++++.|+ ..|++++.++..|.||||+|+..|+.+++++|++.++
T Consensus        52 ~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL-~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga  118 (284)
T PHA02791         52 AGALKNLL--ENEFPLHQAATLEDTKIVKILL-FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW  118 (284)
T ss_pred             CcCCCcCC--CCCCHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45566554  3578888888888888888887 7888888888889999999999999999998888764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.64  E-value=2e-15  Score=83.60  Aligned_cols=70  Identities=23%  Similarity=0.393  Sum_probs=58.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEG---HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC---LSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~---~~~~~~l~~~~~   72 (76)
                      .+|+++|.++..|.||||+|+..+   +.+++++|+ ..|++++.++..|.||||+|...++   .+++++|++.|+
T Consensus        97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798         97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence            468888888888999999888875   578888887 8888888888889999999888877   888888888763

>PHA02798 ankyrin-like protein; Provisional

Probab=99.64  E-value=2.6e-15  Score=83.20  Aligned_cols=68  Identities=12%  Similarity=0.253  Sum_probs=64.0

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++++|.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.++++.|++.+.
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL-~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLL-QLGGDINIITELGNTCLFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCcHHHHHHHH-HcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCC
Confidence            5789999999999999999999999999998 9999999999999999999999999999999988753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.64  E-value=2.7e-15  Score=82.86  Aligned_cols=70  Identities=21%  Similarity=0.294  Sum_probs=63.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM-GCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~-~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.++++.|+ ..|++++.++..|.||||+|+.. ++.+++++|+++|+
T Consensus       189 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga  259 (477)
T PHA02878        189 SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV  259 (477)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence            468899999999999999999999999999998 89999999999999999999965 68999999998874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.63  E-value=2.4e-15  Score=85.32  Aligned_cols=66  Identities=8%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             Ccc-cCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCC
Q psy14142          6 SAN-SQMDNDVTPVYLAAQEG---HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG--CLSCLKWMEHRPA   72 (76)
Q Consensus         6 ~~~-~~~~~~~t~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~--~~~~~~~l~~~~~   72 (76)
                      ++| .+|..|.||||+|+..+   +.+++++|+ ..|++++.+|..|.||||+|+..+  +.+++++|++.|+
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~  103 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS  103 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC
Confidence            566 67888999999999987   589999999 999999999999999999999876  7999999999864

>KOG4177|consensus

Probab=99.63  E-value=1.1e-15  Score=90.01  Aligned_cols=70  Identities=26%  Similarity=0.412  Sum_probs=61.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .|++++..+..+.||||.|+..|+.+++++|+ +.|++.+.++..|.||||.|+..|+.+++.+|+++|+.
T Consensus       529 ~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL-e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  529 HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL-EHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             cCCceehhcccccchHHHHHhcCCchHHHHhh-hCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            57788888888889999999999999999998 88999999888899999999999999999999988753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.63  E-value=5.1e-15  Score=74.64  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             cccCcccCCCCCCcHHHHHHH--cCCHHHHHHHHHhcCCCccccCCCCCcHHHH-HHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQ--EGHLEVLKFLVLEAGGSLYVRAKDGMAPIHA-AAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~-a~~~~~~~~~~~l~~~~   71 (76)
                      +|+++|.++..|.||||+++.  .++.+++++|+ ..|++++.++..|.||+|. +...++.+++++|++.|
T Consensus       112 ~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li-~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G  182 (209)
T PHA02859        112 SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI-DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLG  182 (209)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcC
Confidence            456666666666666666544  24556666665 6666666666666666663 34455666666666654

>KOG0508|consensus

Probab=99.62  E-value=3.3e-16  Score=85.42  Aligned_cols=70  Identities=17%  Similarity=0.351  Sum_probs=65.1

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+|++..+..|.|.|++||..|+.+++++|+ +.|++++.++..|.|+||.++..|+.+++++|+++++
T Consensus       138 E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl-e~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  138 EHGADPEIANRHGHTCLMIACYKGHVDIAQYLL-EQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             HcCCCCcccccCCCeeEEeeeccCchHHHHHHH-HhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            468999999999999999999999999999998 9999999999999999999999999999999999875

>KOG0515|consensus

Probab=99.60  E-value=3.6e-15  Score=82.40  Aligned_cols=67  Identities=28%  Similarity=0.434  Sum_probs=62.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      |+...+++|.|+||.|.+.||.+++++|+ ++|++++..|.+|+||||-|+..++..+.+.|++.|+.
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi-~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaa  641 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLI-EFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAA  641 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHH-hcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccce
Confidence            46666889999999999999999999998 99999999999999999999999999999999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.60  E-value=3.7e-15  Score=85.63  Aligned_cols=68  Identities=12%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCH-----HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH-----HHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHL-----EVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL-----SCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~-----~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~-----~~~~~l~~~~~   72 (76)
                      ++++|..+..|+||||+|+..++.     +.+++|+ ..|++++.++..|.||||+|++.|+.     ++++.|+++++
T Consensus       487 ~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL-~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga  564 (764)
T PHA02716        487 RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL-SIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRP  564 (764)
T ss_pred             hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH-hCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCC
Confidence            456788899999999999999876     4459998 99999999999999999999999976     99999998774

>PHA03095 ankyrin-like protein; Provisional

Probab=99.60  E-value=9.9e-15  Score=80.29  Aligned_cols=68  Identities=21%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEG-HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA--QMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~--~~~~~~~~~~l~~~~   71 (76)
                      .|+++|.++..|.||||+|+..+ ..+++++|+ +.|++++.++..|.||||+|+  ..++.+++++|++.|
T Consensus        72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl-~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g  142 (471)
T PHA03095         72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLI-KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG  142 (471)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC
Confidence            34555555555555555555555 355555554 555555555555555555555  233445555555544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.59  E-value=1.5e-14  Score=79.84  Aligned_cols=69  Identities=20%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             cccCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEG--HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.+|||+|+..+  +.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       130 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll-~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  200 (480)
T PHA03100        130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLI-DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA  200 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH-HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            45666666666666666666666  666666666 6666666666666666666666666666666666553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.57  E-value=2.9e-14  Score=82.97  Aligned_cols=70  Identities=14%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHH-------------------------------HHHHHHHhcCCCccccCCCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLE-------------------------------VLKFLVLEAGGSLYVRAKDGMA   50 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~-------------------------------~~~~l~~~~~~~~~~~~~~g~t   50 (76)
                      .+|+++|.+|..|.||||+|+..++.+                               +++.|+ ..|++++.+|..|.|
T Consensus       579 ~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll-~~Gadin~~d~~G~T  657 (823)
T PLN03192        579 KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELL-KQGLNVDSEDHQGAT  657 (823)
T ss_pred             hcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCC
Confidence            468899999999999988766655554                               455565 678899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCC
Q psy14142         51 PIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        51 pl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |||+|+..|+.+++++|+++|+
T Consensus       658 pLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        658 ALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHHCCcHHHHHHHHHcCC
Confidence            9999999999999999999875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.57  E-value=4.8e-14  Score=71.15  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQE---GHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ--MGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~~~~~l~~~~~   72 (76)
                      ..|++++.++ ..|.||||+++..   ++.+++++|+ ..|++++.++..|.||||.+..  .++.+++++|++.++
T Consensus        74 ~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll-~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         74 ENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILI-DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             HCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            4678888886 4789999987653   4688899888 8899999999999999998765  357899999998773

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.56  E-value=3.9e-14  Score=77.11  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ..|++++..+..|.||||+|+..++.+++++|+ ..|+.++.++..+.+|||.|+..|+.+++++|++.+
T Consensus        23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~   91 (413)
T PHA02875         23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM-KHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG   91 (413)
T ss_pred             HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence            457788888878888888888888888888887 777776666555666666666666666666666554

>KOG0195|consensus

Probab=99.56  E-value=1.4e-14  Score=75.57  Aligned_cols=66  Identities=24%  Similarity=0.381  Sum_probs=57.7

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      -|.|.-|+.|.+||||+|..|+..+++.|+ ..|+.++..+....||||+|+..||-++|..|++..
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~k   90 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK   90 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHh
Confidence            467788888999999999999999999998 899999998888899999999999999988777643

>PHA02946 ankyin-like protein; Provisional

Probab=99.56  E-value=3.7e-14  Score=78.09  Aligned_cols=69  Identities=10%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEG--HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC-LSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~-~~~~~~l~~~~~   72 (76)
                      +.|++++.+|..|.||||+|+..+  +.+++++|+ . +++++.++..|.||||+|+..++ .+++++|++.++
T Consensus       196 ~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl-~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL-P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH-c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            467888888888899999988875  677888775 4 78888888889999998888877 477788887764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.56  E-value=3.6e-14  Score=81.17  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|+++|.++..|.||||+|+..|+.+++++|+ ..|++++..+..|.+|+|.|...++.+++++|++.+
T Consensus       166 ~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL-~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~  234 (682)
T PHA02876        166 EGGADVNAKDIYCITPIHYAAERGNAKMVNLLL-SYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNR  234 (682)
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-HCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            468999999999999999999999999999998 999999999999999999999999999999988765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.55  E-value=5.1e-14  Score=78.21  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHc--CCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQE---GHLEVLKFLVLEAGGSL-YVRAKDGMAPIHAAAQM--GCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~-~~~~~~g~tpl~~a~~~--~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.++..|.|||+.|+..   ++.+++++|+ +.|+++ +.++..|.||||++...  ++.+++++|+++|+
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll-~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Ga  171 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL-SKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGV  171 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH-HCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            57889999999999999877654   5788999998 889999 78888999999987653  57889999998875

>KOG0510|consensus

Probab=99.53  E-value=5.7e-14  Score=80.50  Aligned_cols=61  Identities=28%  Similarity=0.427  Sum_probs=42.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         8 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      |..|.+|+||||+|++.|++++++.|+ ..|++++.++.++.+|||.|+.+|+...++.|++
T Consensus       267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAARQGGPESVDNLL-GFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             hcccccCCchHHHHHHcCChhHHHHHH-HcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            445666777777777777777777666 6777777777667777777777777776666665

>PHA02917 ankyrin-like protein; Provisional

Probab=99.53  E-value=1.1e-13  Score=79.17  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH-cCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ-MGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~-~~~~~~~~~l~~~~~   72 (76)
                      ++|+++|.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|.. .++.+++++|+++++
T Consensus       440 ~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll-~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga  510 (661)
T PHA02917        440 PYLKDINMIDKRGETLLHKAVRYNKQSLVSLLL-ESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKP  510 (661)
T ss_pred             HCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCC
Confidence            578999999999999999999999999999998 9999999999999999999996 678999999998874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.52  E-value=9e-14  Score=80.13  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             cc-cCcccC-CCCCCcHHHHHHHc--CCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHhCCC
Q psy14142          3 YE-MSANSQ-MDNDVTPVYLAAQE--GHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC--LSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~-~~~~~~-~~~~~t~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~--~~~~~~l~~~~~   72 (76)
                      .| +++|.+ +..|.||||+|+..  ++.+++++|+ +.|++++.++..|.||||+|+..|+  .+++++|++.|+
T Consensus       164 ~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA  238 (764)
T PHA02716        164 VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG  238 (764)
T ss_pred             CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            45 677776 67777788776543  4567777777 7777777777777888888777774  377777777764

>KOG4177|consensus

Probab=99.52  E-value=5e-14  Score=83.28  Aligned_cols=71  Identities=30%  Similarity=0.468  Sum_probs=67.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+|++++.++..|+||||.||..|+.+++.+|+ +.|+.++..+.+|.|||+.|.+.|+.+++++|+..+..
T Consensus       561 e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl-k~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  561 EHGADVNAKDKLGYTPLHQAAQQGHNDIAELLL-KHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hCCccccccCCCCCChhhHHHHcChHHHHHHHH-HcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            578999999999999999999999999999998 99999999999999999999999999999999887765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=78.64  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCC-CCCcHHHHHHHc--CCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQM--GCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~g~tpl~~a~~~--~~~~~~~~l~~~~~   72 (76)
                      ++|+++|.+|..|.||||+|+..++.+++++|+ ..|++++.++. .|.||+|.|+..  ++.+++++|+++++
T Consensus       450 s~GADINakD~~G~TPLh~Aa~~~~~eive~LI-~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        450 KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLL-EYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             hcccchhccCCCCCCHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            578999999999999999999999999999998 99999999996 599999999874  78999999999875

>KOG0514|consensus

Probab=99.51  E-value=6.8e-14  Score=74.56  Aligned_cols=68  Identities=22%  Similarity=0.416  Sum_probs=49.9

Q ss_pred             CcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142          6 SANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus         6 ~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      |+|.+. ..|.|+|++|...|..++++.|+ .+|+++|.+|.+|.|+|+-|+..||.+++++|+.....+
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LL-acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALL-ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHH-HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence            455553 35777777777777777777777 777777777777888877777777777777777765444

>KOG0195|consensus

Probab=99.50  E-value=4.7e-14  Score=73.68  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+.+|..+...-+|||+|+..||-++++.|+ ...++++..+..|.||||||+..|...+.+-|+..|+
T Consensus        55 ~rgarvn~tnmgddtplhlaaahghrdivqkll-~~kadvnavnehgntplhyacfwgydqiaedli~~ga  124 (448)
T KOG0195|consen   55 SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL-SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGA  124 (448)
T ss_pred             hcccccccccCCCCcchhhhhhcccHHHHHHHH-HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccc
Confidence            578999999998999999999999999999998 8899999999999999999999999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.48  E-value=6.4e-14  Score=67.70  Aligned_cols=62  Identities=19%  Similarity=0.299  Sum_probs=52.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHH---HHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLE---VLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~---~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .++..|.||||+|+..++.+   ++++|+ ..|++++.++ ..|.||||+|+..++.+++++|++..
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll-~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~  115 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLM-EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQP  115 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHH-HcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Confidence            34667888888888888764   567787 8899999988 48999999999999999999999753

>KOG0510|consensus

Probab=99.48  E-value=1.2e-13  Score=79.28  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=52.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG-GSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      +.|++++.++.++.+|||.|+..|+.++++.|+...+ ...+..|-.|.||||.|++.||..++++|+..|+..
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh
Confidence            4678888888888888888888888888887773132 344556666777777777777777777777777643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.47  E-value=5.8e-13  Score=76.35  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             ccCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEG-HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..+ ..++++.|+ ..|++++.++..|.||||+|+..++.+++++|++.|
T Consensus       331 gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl-~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        331 GADVNAADRLYITPLHQASTLDRNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHH-HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            4455555555555555555432 344555554 566666666666666666666666666666666655

>KOG0502|consensus

Probab=99.46  E-value=2.2e-13  Score=68.73  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME   68 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   68 (76)
                      .-+|..|..|.|||.||+..|++.++++|+ ..|++++.-...-.++|.+|++.|..++|++|+
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk~resALsLAt~ggytdiV~lLL  213 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGKYRESALSLATRGGYTDIVELLL  213 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhhhhhhhHhHHhcCChHHHHHHHH
Confidence            347888889999999999999999988887 776655444333333344444444444444333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.45  E-value=9e-13  Score=69.52  Aligned_cols=64  Identities=22%  Similarity=0.377  Sum_probs=56.2

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW   66 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~   66 (76)
                      ++|+++|.++ ..|.||||+|+..++.+++++|+ ..|++++.++..|.||+|+|+..++.+++..
T Consensus        91 ~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL-~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~  155 (300)
T PHA02884         91 RYGADVNRYAEEAKITPLYISVLHGCLKCLEILL-SYGADINIQTNDMVTPIELALMICNNFLAFM  155 (300)
T ss_pred             HcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHhCChhHHHH
Confidence            5789999864 57999999999999999999998 9999999999999999999998776655433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=1.6e-12  Score=65.16  Aligned_cols=69  Identities=33%  Similarity=0.426  Sum_probs=62.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHHhcCC---CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGH-----LEVLKFLVLEAGG---SLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~~---~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+++++.++..|.|++|+++..++     .++++.++ ..|+   ..+.++..|.||+|+|+..|+.+++++|++.++
T Consensus        95 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~  171 (235)
T COG0666          95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL-EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA  171 (235)
T ss_pred             cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHH-HcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCC
Confidence            477889999999999999999999     99999998 8888   666779999999999999999999999998765

>KOG0514|consensus

Probab=99.45  E-value=2.3e-13  Score=72.60  Aligned_cols=69  Identities=22%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      ..|+|+|.+|.+|.|+|++||..||.++++.|+....++....|.+|.|+|.+|-..|+.++..+|..+
T Consensus       361 acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  361 ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            458999999999999999999999999999998788999999999999999999999999997776543

>KOG0508|consensus

Probab=99.44  E-value=9.4e-14  Score=76.12  Aligned_cols=70  Identities=26%  Similarity=0.402  Sum_probs=64.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.-.....|||-.||.-|+.+++++|+ +.+++++..++.|.|.|+.|+..|+.+++++|+++|+
T Consensus       105 ~~ga~VN~tT~TNStPLraACfDG~leivKyLv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA  174 (615)
T KOG0508|consen  105 RRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA  174 (615)
T ss_pred             HhcCccccccccCCccHHHHHhcchhHHHHHHH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence            467888888888889999999999999999998 9999999999999999999999999999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.42  E-value=9.4e-13  Score=74.63  Aligned_cols=53  Identities=15%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA   56 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~   56 (76)
                      +|+++|.+|..|.||||+|+..++.+++++|+ ..|++++.++..|.||+++|.
T Consensus       399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLL-s~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLI-DNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             cCCccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHH
Confidence            45555555555555555555555555555555 555555555555555555554

>KOG0502|consensus

Probab=99.41  E-value=1.5e-13  Score=69.33  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|++++...+...++|.+|++.|+.+++++|+ .++.+++..|+.|-|||-+|.+.++.+|++.|+..|+
T Consensus       182 ~GAdp~~lgk~resALsLAt~ggytdiV~lLL-~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  182 SGADPDALGKYRESALSLATRGGYTDIVELLL-TREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             cCCChhhhhhhhhhhHhHHhcCChHHHHHHHH-hcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            46777777777778888888888888888887 8888888888888888888888888888888887765

>KOG0506|consensus

Probab=99.40  E-value=2.6e-13  Score=74.36  Aligned_cols=69  Identities=26%  Similarity=0.335  Sum_probs=64.8

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .|+|++.+|.+.+|.||.|+..|+++++++|++....+++.+|+.|+|||..|...+|.+++++|.+..
T Consensus       528 ~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  528 QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            478999999999999999999999999999998889999999999999999999999999999998753

>PHA02917 ankyrin-like protein; Provisional

Probab=99.39  E-value=4.6e-12  Score=72.68  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcC-----------------------CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEG-----------------------HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG   59 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~-----------------------~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~   59 (76)
                      .|++++.++..|.||||.++..+                       ..+++++|+ ..|++++.++..|.||||+|+..+
T Consensus       385 ~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll-~~GAdIN~kd~~G~TpLh~Aa~~~  463 (661)
T PHA02917        385 EGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICL-PYLKDINMIDKRGETLLHKAVRYN  463 (661)
T ss_pred             cCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHH-HCCCCCCCCCCCCcCHHHHHHHcC
Confidence            46777777778999999987433                       245678888 899999999999999999999999


Q ss_pred             CHHHHHHHHhCCC
Q psy14142         60 CLSCLKWMEHRPA   72 (76)
Q Consensus        60 ~~~~~~~l~~~~~   72 (76)
                      +.+++++|++.|+
T Consensus       464 ~~~~v~~Ll~~GA  476 (661)
T PHA02917        464 KQSLVSLLLESGS  476 (661)
T ss_pred             CHHHHHHHHHCcC
Confidence            9999999999875

>KOG0505|consensus

Probab=99.39  E-value=8.6e-13  Score=72.74  Aligned_cols=71  Identities=30%  Similarity=0.449  Sum_probs=66.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      ..|++++..+.+|.|++|-+|.-.+.+|+++++ ..|+.++..|..+.||+|.|+..++..++.+|+.+|+-
T Consensus        61 ~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen   61 NRGASPNLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             ccCCCccccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccccCCcchhhcccccHHHHHHHHHhhhh
Confidence            356788899999999999999999999999998 99999999999999999999999999999999998763

>PHA02792 ankyrin-like protein; Provisional

Probab=99.37  E-value=3.4e-12  Score=72.42  Aligned_cols=70  Identities=14%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             ccccCcccCCCCC--CcHHHHHHHcCCHH---HHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDND--VTPVYLAAQEGHLE---VLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~--~t~l~~a~~~~~~~---~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++|++++.++..|  .+|+|+|+......   ++++++ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       360 s~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI-s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA  434 (631)
T PHA02792        360 KNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCK-PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA  434 (631)
T ss_pred             HcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHH-hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            5799999988764  69999877766543   467777 8999999999999999999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.35  E-value=6.2e-12  Score=69.04  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+++|.+...++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus       188 ~~t~l~~a~~~~~~eIve~LI-s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCI-PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHH-hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            556667777777777888887 7888889999999999999999999999999999885

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.34  E-value=2.2e-11  Score=53.99  Aligned_cols=50  Identities=40%  Similarity=0.622  Sum_probs=45.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         18 VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        18 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ||+|+..++.+++++++ ..+...+.    |.+|+|+|+..|+.+++++|++++.
T Consensus         1 L~~A~~~~~~~~~~~ll-~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~   50 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLL-EKGADINL----GNTALHYAAENGNLEIVKLLLENGA   50 (89)
T ss_dssp             HHHHHHTTTHHHHHHHH-HTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTT
T ss_pred             CHHHHHcCCHHHHHHHH-HCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcc
Confidence            68999999999999998 67766655    8899999999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.30  E-value=5.8e-11  Score=54.81  Aligned_cols=66  Identities=38%  Similarity=0.626  Sum_probs=42.0

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+.+..+..|.+++++++..+..++++.++ ..+...+..+..+.+|+|+|...++.+++++|++.+
T Consensus        31 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          31 ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            333455566666666666666666666665 555555555666667777777666667776666643

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512|consensus

Probab=99.30  E-value=9.2e-12  Score=61.04  Aligned_cols=70  Identities=20%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH-HHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS-CLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~-~~~~l~~~~~   72 (76)
                      .+|++.+.+...||||||-||...+.+++..|+ +.|++++.......||||+++...+.. .+.+|+....
T Consensus       118 ~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL-qhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry  188 (228)
T KOG0512|consen  118 LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL-QHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY  188 (228)
T ss_pred             HccCCcccccccCccchhhhhcccchhHHHHHH-hccCcccccccccchhhHHhhcccchHHHHHHHhhccc
Confidence            368999999999999999999999999999998 999999999999999999999766544 4566665443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=8.6e-11  Score=54.22  Aligned_cols=62  Identities=37%  Similarity=0.629  Sum_probs=56.5

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .++..|.+|+++|+..++.+++++++ ..+.....++..|.+|+|.+...+..+++++|++.+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~   63 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG   63 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            34677999999999999999999998 888887888899999999999999999999999877

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710|consensus

Probab=99.26  E-value=5e-11  Score=62.46  Aligned_cols=66  Identities=20%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++|..|.+|.++|..|+..|+.++++.++ +.|+++|.. ...+-||||+|+..|+.++-++|+..|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll-~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa  103 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLL-ELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGA  103 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHH-HhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccC
Confidence            37888999999999999999999999998 999998875 4668899999999999999999998775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.24  E-value=1.6e-11  Score=50.33  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             hcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142         36 EAG-GSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus        36 ~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +.+ ..++.+|..|.||||+|+..|+.+++++|++.+
T Consensus         3 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g   39 (56)
T PF13857_consen    3 EHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG   39 (56)
T ss_dssp             ---T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT
T ss_pred             ccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc
Confidence            444 788899999999999999999999999999665

>KOG0818|consensus

Probab=99.23  E-value=5.2e-11  Score=65.98  Aligned_cols=67  Identities=22%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             ccccCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          2 TYEMSANSQMD-NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         2 ~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      +-|+++|..+. .|.||||.|+..|...-+++|+ -.|+++...|..|.||+.+|...||.++.+-|++
T Consensus       154 ~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  154 SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HcccccCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            35788888764 6899999999999999999998 9999999999999999999999999998776654

>KOG0705|consensus

Probab=99.22  E-value=8.1e-11  Score=66.15  Aligned_cols=68  Identities=19%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      +-..-+..|+|+||+||+.|++.+.++|+ =.|.+...+|..|.|+|.||.+.|.-+|++.|+.+|..+
T Consensus       653 ~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  653 NETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            33444667899999999999999999998 789999999999999999999999999999999998653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.21  E-value=1.4e-10  Score=67.39  Aligned_cols=60  Identities=35%  Similarity=0.531  Sum_probs=53.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA--------------KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        12 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--------------~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|.||||+|+..++.++++.|+ +.|++++.++              ..|.+|||.|+..++.+++++|+++++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL-~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLL-ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence            46899999999999999999998 8899887653              358899999999999999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13606 Ank_3: Ankyrin repeat

Probab=99.19  E-value=6e-11  Score=42.78  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=21.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         47 DGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        47 ~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|.||||+|+..|+.+++++|+++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            37888999998889999998888863

>KOG0505|consensus

Probab=99.19  E-value=5.5e-11  Score=65.87  Aligned_cols=68  Identities=28%  Similarity=0.387  Sum_probs=61.4

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |...+..+..|.|.+|.|+..|..++..+|+ ..|..++.+|.+|.+|||.|+..|..++.+.|+.+++
T Consensus       188 G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl-~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  188 GAELDARHARGATALHVAAANGYTEVAALLL-QAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             cccccccccccchHHHHHHhhhHHHHHHHHH-HhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            4555666666999999999999999999998 9999999999999999999999999999999988875

>KOG0507|consensus

Probab=99.18  E-value=1.2e-11  Score=70.87  Aligned_cols=59  Identities=25%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME   68 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   68 (76)
                      ....++.+|+|.+++.++.+++.+|+ ..++++..++..+.|++.+|++.|..++++.|+
T Consensus       110 a~~~e~~tplhlaaqhgh~dvv~~Ll-~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll  168 (854)
T KOG0507|consen  110 AVNIENETPLHLAAQHGHLEVVFYLL-KKNADPFIRNNSKETVLDLASRFGRAEVVQMLL  168 (854)
T ss_pred             cccccCcCccchhhhhcchHHHHHHH-hcCCCccccCcccccHHHHHHHhhhhHHHHHHh
Confidence            33333444444444444444444443 334444344444444444444444444443333

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.18  E-value=1.3e-10  Score=42.71  Aligned_cols=32  Identities=34%  Similarity=0.631  Sum_probs=22.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA   45 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   45 (76)
                      +|.||||+|+..++.+++++|+ ..|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLL-KHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHH-HTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHH-HCcCCCCCCC
Confidence            3677777777777777777776 6777666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=99.17  E-value=1e-10  Score=42.18  Aligned_cols=29  Identities=41%  Similarity=0.751  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCcc
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLY   42 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~   42 (76)
                      +|+||||+|+..|+.+++++|+ +.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll-~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLL-EHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHH-HcCCCCC
Confidence            4899999999999999999999 8888765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.11  E-value=3.5e-10  Score=56.72  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=59.7

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ..+..+..|.||+|+|+..++.++++.++ ..++.+...+..|.|++++++..++.+++..++..+
T Consensus       139 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         139 VNNLRDEDGNTPLHWAALNGDADIVELLL-EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CccccCCCCCchhHHHHHcCchHHHHHHH-hcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            56666999999999999999999999998 899999999999999999999999999999988753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.11  E-value=7e-10  Score=64.02  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=51.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        16 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|+.++..|+.+.++.|+ ..|++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL-~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga  139 (664)
T PTZ00322         84 VELCQLAASGDAVGARILL-TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA  139 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence            3578899999999999998 8999999999999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.10  E-value=2.6e-10  Score=41.94  Aligned_cols=26  Identities=38%  Similarity=0.493  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         47 DGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        47 ~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|.||||+|+..++.+++++|+++|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga   26 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA   26 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC
Confidence            48899999999999999999999875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=99.10  E-value=5.7e-11  Score=69.24  Aligned_cols=65  Identities=22%  Similarity=0.387  Sum_probs=60.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|.+|..|++++|+++..+...++++|+ +.|.++..+| ..|.||||-|...|+.+++..|+++|.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            6788999999999999999999999998 8899999998 569999999999999999999999884

>KOG3676|consensus

Probab=99.09  E-value=3.8e-10  Score=65.10  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS--LYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+|+|++.+|..|+|.||.....-..++...++ ..|+.  ...++..|.|||.+|+..|+.++.+.+++.
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L-~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL-ELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHH-hcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            357777777878888887777776677777776 67777  667777788888888888888877777665

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.09  E-value=1.2e-09  Score=63.68  Aligned_cols=68  Identities=18%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             ccCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHhcCCC----------------------------cc------------
Q psy14142          4 EMSANSQMDNDVTPVY-LAAQEGHLEVLKFLVLEAGGS----------------------------LY------------   42 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~-~a~~~~~~~~~~~l~~~~~~~----------------------------~~------------   42 (76)
                      +.++|..|..|.|||| .|+..++.++++.|+ ..+..                            ..            
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl-~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~  120 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLL-NLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQ  120 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHH-hCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccc
Confidence            6778888888999999 777788888888876 44410                            00            


Q ss_pred             --ccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         43 --VRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        43 --~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                        .....|.||||+|+..++.+++++|+++|+
T Consensus       121 ~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GA  152 (743)
T TIGR00870       121 YTSEFTPGITALHLAAHRQNYEIVKLLLERGA  152 (743)
T ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhCCC
Confidence              011358999999999999999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214|consensus

Probab=99.08  E-value=3e-10  Score=50.68  Aligned_cols=54  Identities=28%  Similarity=0.428  Sum_probs=48.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA   56 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~   56 (76)
                      +.|++++.+|+.|.|||.-|.+.||.+|+++|+ +.|++...+..+|.+.+.-+-
T Consensus        55 ~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL-~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   55 SIGANIQDKDKYGITPLLSAVWEGHRDCVKLLL-QNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HhccccCCccccCCcHHHHHHHHhhHHHHHHHH-HcCcccceeCCCchhHHhhcc
Confidence            468999999999999999999999999999998 999999998888887665443

>KOG0522|consensus

Probab=99.07  E-value=1.2e-09  Score=60.79  Aligned_cols=64  Identities=23%  Similarity=0.432  Sum_probs=57.9

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      ..++..|..|.||||+|+..|+...++.|+ ..++++..++..|.+|||.|...|+.+++..++.
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            356778889999999999999999999998 9999999999999999999999999988766554

>KOG0507|consensus

Probab=99.06  E-value=4.4e-10  Score=64.77  Aligned_cols=71  Identities=28%  Similarity=0.375  Sum_probs=63.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+.+-++.++..|.+|+|+|+++|+.++++.++ ..+...+...-.|.+|||.+++.|+.+++.+|+++++.
T Consensus        70 e~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll-~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen   70 DYEALLDLCDTKGILPLHLAAWNGNLEIVKMLL-LQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             cchhhhhhhhccCcceEEehhhcCcchHHHHHH-hcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC
Confidence            445556778888999999999999999999998 77788888889999999999999999999999998763

>KOG2384|consensus

Probab=99.00  E-value=3.1e-09  Score=52.87  Aligned_cols=66  Identities=20%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG-GSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      +.++|..|..|||+++.|++.|..+.+.+|+ ..| +.+...+..+.+.+++|...|..+++..|.++
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyll-grg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLL-GRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHh-ccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4688999999999999999999999999998 777 88889999999999999999999999988774

>KOG1710|consensus

Probab=98.98  E-value=2.1e-09  Score=56.58  Aligned_cols=66  Identities=24%  Similarity=0.426  Sum_probs=58.9

Q ss_pred             ccccCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142          2 TYEMSANSQ-MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME   68 (76)
Q Consensus         2 ~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   68 (76)
                      ..|+|+|.. +..+.|||++|+..|+.++.+.++ +.|+.+...+.-|+|+-++|+.-|+.++|..+=
T Consensus        66 ~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll-daGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   66 ELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL-DAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HhCCCcCcccccccccHHHHHHHcCCchHHHHHH-hccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            357888776 567899999999999999999998 999999999999999999999999999987653

>KOG0515|consensus

Probab=98.97  E-value=1.1e-09  Score=61.48  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=55.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHH--HHcCCHHHHHHHHh
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAA--AQMGCLSCLKWMEH   69 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a--~~~~~~~~~~~l~~   69 (76)
                      ..|+|+|..|.+||||||+|+..++..+++.|+ +.|+.+.... .++.|+..-+  ...|..+|..||..
T Consensus       604 ~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV-e~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  604 EFGANVNAADSDGWTPLHCAASCNNVPMCKQLV-ESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcCCcccCccCCCCchhhhhhhcCchHHHHHHH-hccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            568999999999999999999999999999999 8888776654 6678887754  35677888888753

>KOG0511|consensus

Probab=98.95  E-value=5.4e-09  Score=56.77  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      ..-+..||+.|..+.++.|+ +.|.++|..|+....||.+|+..||.+++++|+++|++
T Consensus        37 f~elceacR~GD~d~v~~LV-etgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLV-ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHH-HhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            34467899999999999999 79999999999999999999999999999999999985

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.94  E-value=1.2e-09  Score=44.37  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=25.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV   34 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~   34 (76)
                      ++|.++|.+|..|.||+|+|+..|+.+++++|+
T Consensus        22 ~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   22 EHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            468899999999999999999999999999874

...

>KOG3676|consensus

Probab=98.90  E-value=7.8e-09  Score=59.96  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         11 MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        11 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      -..|..||.+|++.+..+++++|+ +.+++++.+|..|.|.||.....-..++.+++++.++-
T Consensus       237 ~YfGEyPLSfAAC~nq~eivrlLl-~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  237 FYFGEYPLSFAACTNQPEIVRLLL-AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             eeeccCchHHHHHcCCHHHHHHHH-hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            456889999999999999999998 89999999999999999999888778888999988764

>KOG4369|consensus

Probab=98.54  E-value=2.9e-08  Score=60.28  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++...|..|.+|+..++-.||..+++.|+ ...+++..+ |+.+.|+|-+++..|+.+++++|+..++
T Consensus       778 ~rganiehrdkkgf~plImaatagh~tvV~~ll-k~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ga  848 (2131)
T KOG4369|consen  778 VRGANIEHRDKKGFVPLIMAATAGHITVVQDLL-KAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGA  848 (2131)
T ss_pred             HhcccccccccccchhhhhhcccCchHHHHHHH-hhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhc
Confidence            356777777777777777777777777777776 666665543 4566777777777777777777776654

>KOG0506|consensus

Probab=98.53  E-value=8.5e-08  Score=53.51  Aligned_cols=61  Identities=26%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      ++..++.+|+..|.+...+.++ -.|.+...+|.+.+|+||+|+..|+.++++||+....++
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~-l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFA-LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHH-HhcccccccccccchhheeecccCceeHHHHHHHHHcCC
Confidence            4567889999999999888776 789999999999999999999999999999999865543

>KOG0783|consensus

Probab=98.47  E-value=3.7e-07  Score=54.17  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=50.7

Q ss_pred             ccccCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q psy14142          2 TYEMSANSQMD-NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ   57 (76)
Q Consensus         2 ~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~   57 (76)
                      -+|++++.+|. .|+|+||-|...|+++|+..|+ ..|.....+|.+|..||+..++
T Consensus        73 qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL-~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   73 QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL-SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCceeeeccccccchHhhHhhhhchHHHHHHHH-hcCCceEEecccCCCHHHHHhh
Confidence            36899999986 6999999999999999999998 9999999999999999998776

>KOG0521|consensus

Probab=98.35  E-value=4.4e-07  Score=53.63  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=55.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         11 MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        11 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      -..|++++|.++..+..-..++|+ +.|++++..+..|.+|+|.+...|+...+..+++.++-
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~  714 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD  714 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHH-hcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc
Confidence            456799999999999999999998 99999999999999999999999999998888887653

>KOG0818|consensus

Probab=98.18  E-value=9.6e-06  Score=45.97  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        16 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .-||-+++.++.+..-.|+ ..|+..+... ..|.||||+|++.|+..-+++|+-+|+-
T Consensus       135 rQLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD  192 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD  192 (669)
T ss_pred             HHHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC
Confidence            3568889999998665565 7899998876 6699999999999999999999888763

>KOG0511|consensus

Probab=98.15  E-value=1.1e-05  Score=44.48  Aligned_cols=55  Identities=31%  Similarity=0.366  Sum_probs=43.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM   58 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~   58 (76)
                      +.|+++|..|....+||.+|+-.||.+++++|+ +.|+....-..+|. ..|+++..
T Consensus        57 etgvnVN~vD~fD~spL~lAsLcGHe~vvklLL-enGAiC~rdtf~G~-RC~YgaLn  111 (516)
T KOG0511|consen   57 ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLL-ENGAICSRDTFDGD-RCHYGALN  111 (516)
T ss_pred             HhCCCcchhhcccccHHHHHHHcCcHHHHHHHH-HcCCcccccccCcc-hhhhhhhh
Confidence            468999999999999999999999999999998 88885544334454 45565543

>KOG0782|consensus

Probab=98.09  E-value=7.6e-06  Score=47.23  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=35.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS--LYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .++...++.||+|+..|+-+++++++ +.+..  .+..+..|.|+||-|+..++-.+..+|+..|+
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyil-dh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga  958 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYIL-DHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA  958 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHH-hcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch
Confidence            34445566666666666666666665 43321  22334556666666665555555555555543

>KOG0782|consensus

Probab=98.04  E-value=1.3e-05  Score=46.39  Aligned_cols=63  Identities=27%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         8 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +..+..|.|.||.|+..+.-.+.++++ +.|+.....|..|.||-.-|.+.+..++..||.+..
T Consensus       928 d~~de~get~lhkaa~~~~r~vc~~lv-dagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  928 DMADETGETALHKAACQRNRAVCQLLV-DAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHhhhhhHHHHHHHHhcchHHHHHHH-hcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            445678999999999999999999998 999999999999999999999999999999987654

>KOG4369|consensus

Probab=98.01  E-value=8.3e-06  Score=50.40  Aligned_cols=57  Identities=28%  Similarity=0.372  Sum_probs=53.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      +..|+|..+|..||.+.+++++ ..|+++..+|..|.+||.+++-.||..+|+.|+++
T Consensus       756 n~~t~LT~acaggh~e~vellv-~rganiehrdkkgf~plImaatagh~tvV~~llk~  812 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLV-VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKA  812 (2131)
T ss_pred             cccccccccccCccHHHHHHHH-HhcccccccccccchhhhhhcccCchHHHHHHHhh
Confidence            4578999999999999999998 99999999999999999999999999999988875

>smart00248 ANK ankyrin repeats

Probab=97.98  E-value=3.1e-05  Score=26.20  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=18.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         48 GMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        48 g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+|+|+++..++.+++++|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5677888777777888877777654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520|consensus

Probab=97.92  E-value=2.9e-05  Score=46.98  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCcc------ccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY------VRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~------~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      |..++.+|..|+||||||+..|+..++..|. ..++...      .....|.|+-..|...|+..+..+|-+
T Consensus       631 ~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~-~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  631 GVAIDIRDRNGWTPLHWAAFRGREKLVASLI-ELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             ccccccccCCCCcccchHhhcCHHHHHHHHH-HhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            4567777777888888888888777777665 4444322      223446677777777777666655543

>KOG0521|consensus

Probab=97.88  E-value=1.4e-05  Score=47.64  Aligned_cols=65  Identities=18%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM   67 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   67 (76)
                      ..|+++|..+..|.+|+|.+...|+......++ ..++..+..+.+|..|+++|....+.+++-++
T Consensus       677 ~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll-~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  677 QNGADVNALDSKGRTPLHHATASGHTSIACLLL-KRGADPNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             hcCCcchhhhccCCCcchhhhhhcccchhhhhc-cccccccccCccCcchhhHHhhhccccHHHHH
Confidence            468899999999999999999999999988887 89999999999999999999877776665544

>KOG3609|consensus

Probab=97.81  E-value=5e-05  Score=45.23  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC------------------------------------CccccCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGG------------------------------------SLYVRAKD   47 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------------------------------------~~~~~~~~   47 (76)
                      ..++|..|.-|+++++.|..+.+.++.++|+ +...                                    .....-..
T Consensus        52 ~lninc~d~lGr~al~iai~nenle~~eLLl-~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~  130 (822)
T KOG3609|consen   52 KLNINCRDPLGRLALHIAIDNENLELQELLL-DTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTP  130 (822)
T ss_pred             ccchhccChHhhhceecccccccHHHHHHHh-cCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCC
Confidence            3678888888988888888888888888776 3310                                    00011234


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         48 GMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        48 g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.||+.+|+..++.||+++|+.+|+
T Consensus       131 ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  131 DITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             CccHHHHHHHhcchHHHHHHHHcCC
Confidence            6799999999999999999999875

>smart00248 ANK ankyrin repeats

Probab=97.80  E-value=0.00011  Score=24.67  Aligned_cols=28  Identities=43%  Similarity=0.782  Sum_probs=23.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCc
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSL   41 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~   41 (76)
                      .+.+++++++..++.++++.++ ..+..+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll-~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLL-DKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HcCCCC
Confidence            3679999999999999999998 665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520|consensus

Probab=97.80  E-value=7.7e-06  Score=49.25  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         37 AGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        37 ~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+..++++|..|+||||+|+..|+..++.-|++.++
T Consensus       630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga  665 (975)
T KOG0520|consen  630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGA  665 (975)
T ss_pred             cccccccccCCCCcccchHhhcCHHHHHHHHHHhcc
Confidence            455788899999999999999999999999887654

>KOG2505|consensus

Probab=97.77  E-value=8.6e-05  Score=42.26  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14142         11 MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA   56 (76)
Q Consensus        11 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~   56 (76)
                      +..-.|+||+|+.+|...++..+| ..|+++..+|..|.||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~L-eeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFL-EEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHH-HhcCCchhcccCCCCcccccc
Confidence            344579999999999999999998 888999999999999998876

>KOG0522|consensus

Probab=97.76  E-value=8.9e-05  Score=42.33  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             cHHHHHHHcCCHH-HHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         16 TPVYLAAQEGHLE-VLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        16 t~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|+|++......+ +.+.+.......++.+|..|.||||+|...|+.+.++.|+..++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A   79 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA   79 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC
Confidence            3478888777665 33433324566777889999999999999999999999999876

>KOG2384|consensus

Probab=97.14  E-value=0.00082  Score=34.17  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142         38 GGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus        38 ~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      +.+++.+|.-|.|+++-|+..|..+.+.||+..|...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~   38 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF   38 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc
Confidence            4578889999999999999999999999999998543

>KOG0705|consensus

Probab=96.67  E-value=0.0036  Score=36.80  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=33.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS   40 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~   40 (76)
                      ||+|+...|..|.|+|.||.+.|.-+|+..|+ +.|+.
T Consensus       683 yg~dv~~rda~g~t~l~yar~a~sqec~d~ll-q~gcp  719 (749)
T KOG0705|consen  683 YGVDVMARDAHGRTALFYARQAGSQECIDVLL-QYGCP  719 (749)
T ss_pred             hCccceecccCCchhhhhHhhcccHHHHHHHH-HcCCC
Confidence            68899999999999999999999999999998 77664

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.97  E-value=0.054  Score=28.69  Aligned_cols=49  Identities=10%  Similarity=0.167  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHhcCCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142         26 HLEVLKFLVLEAGGSLY---VRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus        26 ~~~~~~~l~~~~~~~~~---~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      ...+.+++++..-..++   .+...|.|-|.-|..+++.+++.+|+++|++.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            45566666622223333   34577999999999999999999999999863

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=94.52  E-value=0.14  Score=30.03  Aligned_cols=44  Identities=20%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhcCCCccc------cCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142         27 LEVLKFLVLEAGGSLYV------RAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus        27 ~~~~~~l~~~~~~~~~~------~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ...+++|. ..+...++      .+.--.|+||+|+..|.-+++.+|++.+
T Consensus       404 p~~ie~lk-en~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg  453 (591)
T KOG2505|consen  404 PDSIEALK-ENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG  453 (591)
T ss_pred             hhHHHHHH-hcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc
Confidence            45667775 66655544      2333678999999999999999999887

>KOG3609|consensus

Probab=93.35  E-value=0.14  Score=31.67  Aligned_cols=58  Identities=14%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcC---CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAG---GSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~---~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +.-.+..++..|....++..++...   -+++..|.-|+++++.|....+.+++++|+++.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~   85 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS   85 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc
Confidence            3445677899999888877664433   356678888999999999999999999998874

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.80  E-value=0.39  Score=20.69  Aligned_cols=52  Identities=12%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142         15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      ...+..|...|+.++++.++ +.+. +      ....+..|...=+.+++++|++.-..+
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~-~~~~-~------~~~~l~~AI~~H~n~i~~~l~~~y~~~   58 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICL-KKNK-P------DNDCLEYAIKSHNNEIADWLIENYNLK   58 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHH-HHhc-c------HHHHHHHHHHHhhHHHHHHHHHhcCCC
Confidence            34578899999999999886 4331 1      134788898888899999998864433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1709|consensus

Probab=90.66  E-value=0.35  Score=25.73  Aligned_cols=38  Identities=26%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS   40 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~   40 (76)
                      ++|+..|..|....|+=.+|...++....+.|+ +.|..
T Consensus         3 e~ga~wn~id~~n~t~gd~a~ern~~rly~~lv-~~gv~   40 (271)
T KOG1709|consen    3 EYGAGWNFIDYENKTVGDLALERNQSRLYRRLV-EAGVP   40 (271)
T ss_pred             ccCCCccccChhhCCchHHHHHccHHHHHHHHH-HcCCc
Confidence            567777777777777777787777777777777 55543

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.24  E-value=2.4  Score=21.99  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142         18 VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus        18 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      +.+|+..|....+.-.+ ..|+..+.      +.|..|+..++-.++.+++.
T Consensus       147 l~~a~~kgll~F~letl-kygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETL-KYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHH-HcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            35667777766555444 55555543      47777777777777777664

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		8e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          N++  N  TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L  +K +
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          N++  N  TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L  +K +
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N++  +  TP++LAA+EGHLE+++ L L+AG  +  + KDG  P+H AA+ G 
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 81 LEIVEVL 87

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N++  +  TP++LAA+EGHLE+++ L L+AG  +  + KDG  P+H AA+ G 
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 81 LEIVEVL 87

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N++  +  TP++LAA+EGHLE+++ L L+AG  +  + KDG  P+H AA+ G 
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 93 LEIVEVL 99

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          N++  +  TP++LAA+ GH E++K L L  G  +  R+KDG  P H A + G    +K +
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLL-LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 68 EHRPA 72
          + + A
Sbjct: 95 DAKGA 99

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV-LEAGGSLYVRAKDGMAPIHAAAQMG 59
           + Y  SAN++    VTP++LAAQEGH E++  L+  +A G+L    K G+ P+H  AQ G
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEG 289

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15  VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           VTP++LAA  GHLEV++ L L+ G  +     +G  P+H AA +G L  ++ +
Sbjct: 81  VTPLHLAADRGHLEVVEVL-LKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N++  +  TP++ AA+EGH E++K L+   G  +  +  DG  P+H AA+ G    +K +
Sbjct: 64  NAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N++  +  TP++LAA+ GH EV+K L L  G     +  DG  P+H AA+ G    +K +
Sbjct: 64  NAKDSDGKTPLHLAAENGHKEVVKLL-LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N++  +  TP++ AA+ GH EV+K L+   G  +  +  DG  P+H AA+ G    +K +
Sbjct: 64  NAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N+  D  VTP++LAA+ GHLE+++ L L+ G  +  R   G  P+H AA +G 
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGADVNARDIWGRTPLHLAATVGH 92
Query: 61 LSCLK 65
          L  ++
Sbjct: 93 LEIVE 97

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15  VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           +TP++LAA  GHLE+++ L L+ G  +     DG  P+H AA+ G L  ++ +
Sbjct: 81  ITPLHLAAATGHLEIVEVL-LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15  VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           VTP++LAA+ GHLE+++ L L+ G  +      G  P+H AA+ G L  ++ +
Sbjct: 81  VTPLHLAARRGHLEIVEVL-LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           TP++LAA  GHLE+++ L L+ G  +     DGM P+H AA+ G L  ++
Sbjct: 82  TPLHLAAYWGHLEIVEVL-LKNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N++  +  TP++ AA+ GH E++K L L  G     +  DG  P+H AA+ G    +K +
Sbjct: 64  NAKDSDGRTPLHYAAENGHKEIVKLL-LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           TP++LAA  GHLE+++ L L+ G  +  +  +G+ P+H AA  G L  ++
Sbjct: 82  TPLHLAAHFGHLEIVEVL-LKNGADVNAKDDNGITPLHLAANRGHLEIVE 130

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N+  D   TP++LAA  GH E+++ L L+ G  +  R  DG  P+H AA  G 
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL-LKHGADVNARDTDGWTPLHLAADNGH 92
Query: 61 LSCLK 65
          L  ++
Sbjct: 93 LEIVE 97

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N+  D  VTP++LAA+ GHLE+++ L L+ G  +      G  P+H AA +G 
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGADVNASDSWGRTPLHLAATVGH 92
Query: 61 LSCLK 65
          L  ++
Sbjct: 93 LEIVE 97

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + Y    N+  +   TP++LAA  GHLE+++ L L+ G  +  +  +G  P+H AA  G 
Sbjct: 67  LKYGADVNAWDNYGATPLHLAADNGHLEIVEVL-LKHGADVNAKDYEGFTPLHLAAYDGH 125
Query: 61  LSCLK 65
           L  ++
Sbjct: 126 LEIVE 130

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 4  EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
          +++AN +  N  TP++LAA   HLE+++ L L+ G  +     DG  P+H AA  G L  
Sbjct: 39 DVNANDRKGN--TPLHLAADYDHLEIVEVL-LKHGADVNAHDNDGSTPLHLAALFGHLEI 95
Query: 64 LKWM 67
          ++ +
Sbjct: 96 VEVL 99

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQM 58
          M      N+  D  VTP++LAA+ GHLE+++ L L+ G    V A D  G  P+H AA +
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGAD--VNASDIWGRTPLHLAATV 90
Query: 59 GCLSCLK 65
          G L  ++
Sbjct: 91 GHLEIVE 97

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N+  DN +TP++LAA  G LE+++ L L+ G  +      G+ P+H AA  G 
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVL-LKNGADVNASDSAGITPLHLAAYDGH 84
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 85 LEIVEVL 91

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N+  ++ +TP++LAAQ GHLE+++ L L+ G  +      G+ P+H AA  G 
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVL-LKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 93 LEIVEVL 99

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1  MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
          M      N++ D+  TP++LAA +GHLE+++ L L+ G  +    K G  P+H AA  G 
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL-LKHGADVNAADKMGDTPLHLAALYGH 92
Query: 61 LSCLKWM 67
          L  ++ +
Sbjct: 93 LEIVEVL 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-06
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	5e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-04

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.8 bits (133), Expect = 6e-11
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                 +D +P++ AA  GH   L+ L +  G ++ +   D ++P+H A   G LSC+K
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNL-ISQGWAVNIITADHVSPLHEACLGGHLSCVK 109

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N    + V+P++ A   GHL  +K L L+ G  +     D   P+  A   G   C+ 
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKIL-LKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.4 bits (119), Expect = 6e-09
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N    +  TP++ A   G  + +  L L+ G S+     D  +PIH AA+ G + C+ 
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLL-LQHGASVQ-PESDLASPIHEAARRGHVECVN 174

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 7   ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           A+ Q ++D  +P++ AA+ GH+E +  L +  GG++  +      P++ A +    +C+K
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSL-IAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 6e-08
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           A+        +P++   +    E+   L ++ G     +  +G  P+        L
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLL-MDFGADTQAKNAEGKRPVELVPPESPL 268

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 7e-08
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + ++ +  TP+YLA +      +K L LE+G  +  + K   +P+HA  +    
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKL-LESGADVN-QGKGQDSPLHAVVRTASE 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 6/47 (12%)

Query: 20 LAAQEGHLEVLKFLVLEAGGSL-----YVRAKDGMAPIHAAAQMGCL 61
          + +   H      L +  G  +          DG  P       G  
Sbjct: 1  MGSSHHHHHHSSGL-VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR 46

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.8 bits (123), Expect = 2e-10
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N++  N  TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 81

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 1e-09
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L
Sbjct: 4  TPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 48

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 35.8 bits (84), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
          N++  N  TP++LAA+ GHLEV+K L LEAG
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 91

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.4 bits (127), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N    N  TP+  A +  H++ ++ L L  G  L   A  G  P+  A  +G     +
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGYRKVQQ 152

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 3e-10
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          N   +   TP+  A+  G +E ++FL LE G   ++ AK+  + +  A+  G    + 
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFL-LEWGADPHILAKERESALSLASTGGYTDIVG 86

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.7 bits (120), Expect = 2e-09
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           +       + + LA+  G+ +++  L LE    + +   +G  P+  A +   + C++
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLL-LERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.3 bits (106), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
            ++  A +G L+ LK   L  G +L V   D  G  P+  A+  G +  ++
Sbjct: 4  LSIHQLAAQGELDQLKEH-LRKGDNL-VNKPDERGFTPLIWASAFGEIETVR 53

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.2 bits (98), Expect = 3e-06
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAP 51
            ++ D+  TP+ LA   G+ +V + +       L+        P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVI-ENHILKLFQSNLVPADP 171

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.9 bits (123), Expect = 3e-10
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          N  ++    P++ AA  G LE+L+FL L  G  +    K  + P+ +A   G +SC+K
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFL-LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.9 bits (123), Expect = 4e-10
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+   + +TP+  A  EGH+  +K L L  G    V+  DG+    A       + L+
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLL-LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 11 MDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          + +        A + G L+ +K   +  G  +    + G  P+H AA  G L
Sbjct: 3  LGSMCDKEFMWALKNGDLDEVKDY-VAKGEDVNRTLEGGRKPLHYAADCGQL 53

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.8 bits (123), Expect = 3e-10
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N++  +  TP++LAA+ GH E++K L L  G  +  R+KDG  P H A + G  
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLL-LAKGADVNARSKDGNTPEHLAKKNGHH 88

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 49.3 bits (119), Expect = 1e-09
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            D  TP++ AA+ GH E +K L L  G  +  R+KDG  P+H AA+ G  
Sbjct: 6  SKDGNTPLHNAAKNGHAEEVKKL-LSKGADVNARSKDGNTPLHLAAKNGHA 55

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.7 bits (94), Expect = 7e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIH 53
           N++  +  TP +LA + GH E++K L    G  +  R+       H
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLL-DAKGADVNARSWGSSHHHH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 4e-10
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N Q  +  +PV+ AA+ G L+ LK L +E G  + V    G  PIH A Q G  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVL-VEHGADVNVPDGTGALPIHLAVQEGHT 114

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 9e-09
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           D     P++LA QEGH  V+ FL   A   L+ R   G+ P+  A Q G  
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQ 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          ++      T + +    G   +   L L+ G S  V+   G +P+H AA+ G L
Sbjct: 30 DALNRFGKTALQVMM-FGSTAIALEL-LKQGASPNVQDTSGTSPVHDAARTGFL 81

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 2e-05
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
            +  AA  G ++ ++ L+           + G   +    
Sbjct: 4  DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM 44

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 34.7 bits (81), Expect = 6e-04
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
           + +    +TP+ LA Q G  +++  L 
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.2 bits (124), Expect = 4e-10
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N   +   TP+  AA  G + V++FL L+ G    +  K   + +  A   G  
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFL-LQNGADPQLLGKGRESALSLACSKGYT 82

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 1e-09
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N    N  TP+  A    H++ +K L LE+G    +    G   +  A  +G  S  +
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKML-LESGADPTIETDSGYNSMDLAVALGYRSVQQ 152

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.1 bits (121), Expect = 1e-09
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                   + + LA  +G+ +++K L L+ G  +     +G  P+  A     + C+K
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKML-LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 4e-08
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   V+  A +G +  L    +E    +    ++G  P+  AA  G +
Sbjct: 2  ANSLSVHQLAAQGEMLYLATR-IEQENVINHTDEEGFTPLMWAAAHGQI 49

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD 47
             + D+    + LA   G+  V + +       L    K+
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVI-ESHLLKLLQNIKE 167

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 5e-10
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N Q D   TP+  A +  H++++K L L  G  + +R  +    +H AA  GC+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLL-LSKGSDINIRDNEENICLHWAAFSGCV 157

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.1 bits (121), Expect = 2e-09
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          ++  ++  TP+  AA+  HLE +K+L ++AG  +  +  +G   +H AA+ G    ++
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYL-IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQ 94

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.2 bits (116), Expect = 1e-08
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            +  N  +P++ AA+ GH+++   L ++AG ++   ++D   P+  AA+   L
Sbjct: 5  KMEHQNKRSPLHAAAEAGHVDICHML-VQAGANIDTCSEDQRTPLMEAAENNHL 57

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.2 bits (116), Expect = 1e-08
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           ++   +  +P+++AA+E   + +    L     + ++ K+G  P+  A+    +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLF-LSRDSDVTLKNKEGETPLQCASLNSQV 223

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-08
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N + + +   ++ AA  G +++ + L L A   L+     G +P+H AA+     C+ 
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEIL-LAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + +     T ++LAA++GH EV+++L+      +  +   G  P+  A +   +
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 5e-10
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N       TP+++AA+EGH+E +  L LE   S     K G  P+H AA+ G +   +
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLAL-LEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 6e-10
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N++    VTP++LAAQEGH E++  L L    +  +  K G+ P+H  AQ G +    
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+   N +TP+++A    +L+++K L L  GGS +  A +G  P+H AA+   +
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLL-LPRGGSPHSPAWNGYTPLHIAAKQNQV 225

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 8e-10
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N++     +P++ AAQ+GH +++  L L+ G S    + DG  P+  A ++G +S   
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 8e-10
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          N       TP+++AA+ GH EV K+L L+    +  +AKD   P+H AA++G  + +K
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 1e-09
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N++  +D TP++ AA+ GH  ++K L LE   +  +    G  P+H AA+ G +
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLL-LENNANPNLATTAGHTPLHIAAREGHV 126

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
           N    + +TP++L AQEGH+ V   L ++ G  +    + G  P+H A+  G +  +K+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVL-IKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 5e-09
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           +S   N  TP+++AA++  +EV + L L+ GGS    +  G+ P+H AAQ G    + 
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 5e-09
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                   TP+++AA+ G + V + L LE         K+G+ P+H A     L
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELL-LERDAHPNAAGKNGLTPLHVAVHHNNL 192

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
              ++ +TP+++A+  GHL ++K L L+ G S  V       P+H AA+ G  
Sbjct: 8  GGGGESGLTPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPLHMAARAGHT 60

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           ++      TP+++A+  G+++++KFL L+    +  + K G +P+H AAQ G    + 
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFL-LQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFL--VLEAGGSLYVRAKDGMAPIHAA 55
           N    +  TP+ +A + G++ V   L  V +    + V  K  M+     
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 51.3 bits (124), Expect = 5e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N   D+  +P++ A +EG   V++ L +  G  + V  +    P+H AA  G  
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEML-IMRGARINVMNRGDDTPLHLAASHGHR 85

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.3 bits (111), Expect = 4e-08
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            + +  ++   +EG+   ++  +      L      G +P+H A + G  
Sbjct: 2  SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS 52

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 5e-08
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+  ++   P++ A   G  +V + L +  G  + +  K G  P+  A         +
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDL-VANGALVSICNKYGEMPVDKAKAPLRELLRE 155

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.5 bits (109), Expect = 9e-08
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N     D TP++LAA  GH ++++ L L+    +    + G  P+H A   G  
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYACFWGQD 118

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.9 bits (120), Expect = 6e-10
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
            ++  N  TP++LAA+ GHLEV+K L LEAG  +  + K G      +   G     + +
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLL-LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

Query: 68  E 68
           +
Sbjct: 110 Q 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +    +  AA+ G  + ++ L +  G  +  + K+G  P+H AA+ G L
Sbjct: 22 SDLGKKLLEAARAGQDDEVRIL-MANGADVAAKDKNGSTPLHLAARNGHL 70

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 36.4 bits (85), Expect = 9e-05
 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 4/41 (9%)

Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   H      L +  G  +     D    +  AA+ G  
Sbjct: 1  GSSHHHHHHSSGL-VPRGSHMG---SDLGKKLLEAARAGQD 37

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 9e-10
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           D + TP++ A ++GHL ++  L ++ G    +   +G + IH AAQ G  S + 
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQL-MKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 3e-09
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          D     +  A Q G  E  + L +EAG  +    K+ +  +H AA    +
Sbjct: 7  DYSTWDIVKATQYGIYERCREL-VEAGYDVRQPDKENVTLLHWAAINNRI 55

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 3e-08
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           T ++ A   G+  V+  L LEAG ++  +   G + +  A Q   +
Sbjct: 179 TALHWAVLAGNTTVISLL-LEAGANVDAQNIKGESALDLAKQRKNV 223

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           +       + ++LAAQ GH  ++ +L +  G  + +  ++GM P+  AA   
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYL-IAKGQDVDMMDQNGMTPLMWAAYRT 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLK 65
                +VT ++ AA    ++++K+  +  G  +     D    P+H A + G LS + 
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYY-ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 8   NSQMDNDVTPVYLAAQEGH-LEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLK 65
           +    N +TP+  AA   H ++  + L L    S+ +  K      +H A   G  + + 
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLL-LTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N Q     T ++ AA +G+ ++++ L L  G    +R  +       A    C S LK  
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLL-LAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192

Query: 68  EHRPAVK 74
           +   AV+
Sbjct: 193 QGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N       T +Y A   GH ++++ L  +    L  + K G   +HAAA  G  
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
              Q ++   P++ AA+ G+L  L+   L+    +    K G   ++ A   G    ++
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLREC-LDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 6/58 (10%), Positives = 11/58 (18%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
             +      V+ A           L +E  G +                 G    + 
Sbjct: 6  PKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIP 62

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 1e-09
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+      TP++ AA +  +EV   L L  G    +    G + +  A        L 
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLL-LSHGADPTLVNCHGKSAVDMAPTPELRERLT 174

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++    + P++ A   GH EV + L L+ G  +         P+H AA    +
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELL-LKHGACVNAMDLWQFTPLHEAASKNRV 137

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           ++      TP++LAA    + +++ L L+ G  ++ + K G+ P+H A   G  
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIVQLL-LQHGADVHAKDKGGLVPLHNACSYGHY 104

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N +  + +TP+++AA+  H +V++ L  + G  +      G   +H AA  G L
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHRAALAGHL 293

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 3e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 8   NSQMDNDVTPVYLAAQEGH---LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
             Q  +  T ++ A    H    +V + L L  G ++  + KD M P+H AA+    
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELL-LRKGANVNEKNKDFMTPLHVAAERAHN 260

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.9 bits (97), Expect = 6e-06
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM 58
           N+      T ++ AA  GHL+  + L L  G    + +  G        + 
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLL-LSYGSDPSIISLQGFTAAQMGNEA 323

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 10/58 (17%), Positives = 21/58 (36%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
              +     +  AA+ G+ E L  L+     + +        P+H AA    +  ++
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 20/72 (27%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV--------------------LEAGGSLYVRAKD 47
                +  + V +A      E L +                      L      + + + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 48  GMAPIHAAAQMG 59
               +H A    
Sbjct: 211 HETALHCAVASL 222

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 1e-09
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N++  N  TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 114

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 3e-09
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N++  N  TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 81

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.0 bits (113), Expect = 1e-08
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          TP++LAA+ GHLEV+K L LEAG  +  + K+G  P+H AA+ G L
Sbjct: 4  TPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 48

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 34.6 bits (81), Expect = 5e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
           N++  N  TP++LAA+ GHLEV+K L LEAG
Sbjct: 95  NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 1e-09
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N Q     +P   A  +G  E+L +++  A   L    + G   +  AA+ G +
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 1e-07
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          +       TP+ +A     +E+ K L ++ G  + ++     +P   A   G  
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKAL-IDRGADINLQNSISDSPYLYAGAQGRT 85

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            +    +  A Q    +V + L  +    +     +G  P++ A     +
Sbjct: 3  TYEVGALLEAANQRDTKKVKEIL-QDTTYQVDEVDTEGNTPLNIAVHNNDI 52

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS-LYVRAKDGMAPIHAAAQMG 59
           N         +  AA++GH++ +K L LE G   +  +   G   +  A  + 
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLL-LEDGREDIDFQNDFGYTALIEAVGLR 151

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.4 bits (88), Expect = 8e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 8   NSQMDNDVTPVYLAA-----QEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + Q D   T +  A       + + +++K L +E G    ++   G   +  A Q G  
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLL-MENGADQSIKDNSGRTAMDYANQKGYT 191

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 2e-09
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N++  +  TP++LAA  GHLE+++ L L+ G  +      GM P+  AA  G L
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVL-LKNGADVNAVDHAGMTPLRLAALFGHL 93

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.0 bits (113), Expect = 2e-08
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+     +TP+ LAA  GHLE+++ L L+ G  +     +G  P+H AA  G L
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVL-LKNGADVNANDMEGHTPLHLAAMFGHL 126

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 3e-08
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+      TP++LAA  GHLE+++ L L+ G  +  + K G      +   G  
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVL-LKNGADVNAQDKFGKTAFDISIDNGNE 159

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 3e-07
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 DNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +D+   +  AA+ G  + ++ L +  G  +      G  P+H AA  G L
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRIL-MANGADVNAEDASGWTPLHLAAFNGHL 60

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 2e-09
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
             Q     T ++LA + G ++  K+L    G         G  PIH A        + 
Sbjct: 47  TIQNRFGCTALHLACKFGCVDTAKYL-ASVGEV--HSLWHGQKPIHLAVMANKTDLVV 101

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 1/59 (1%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                   +  V  AA     EVL+ L  E    +      G        +    +  +
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLL-QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS----LYVRAKDGMAPIHAAAQMGCL 61
            ++   D TP+  A +  + E L  ++          L    K G + +H A  +   
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 7/55 (12%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
               + +   P++LA      +++  L +E         + G  P     +    
Sbjct: 77  EVHSLWHGQKPIHLAVMANKTDLVVAL-VEGA------KERGQMPESLLNECDER 124

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
              D ++  +++AA++G  + ++ L +E G S  ++ + G   +H A + GC+
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRL-IETGVSPTIQNRFGCTALHLACKFGCV 66

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 4   EMSANSQMDNDVTPVYLAAQEG--HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           E+ ++ +     T ++     G  +LE++K L ++ G S   + K    P+  A +    
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL-VQLGASPTAKDKADETPLMRAMEFRNR 186

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 5/54 (9%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +       + ++ A      +V     +E G  + +   +   P++ + +   +
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRF-VEMGIDVNMEDNEHTVPLYLSVRAAMV 257

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 7e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV------------LEAGGSLYVRAKDGMAPIHAA 55
           N + +    P+YL+ +   + + K L+               G ++       +  + AA
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 56  AQMGCLSCLK 65
           A       L+
Sbjct: 298 ADPSKQEVLQ 307

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 3/48 (6%), Positives = 12/48 (25%), Gaps = 1/48 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
              ++          ++    V +   L     +  R++        +
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMK-LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 14/64 (21%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP 71
           +    P  L  +    EV +          +V+   G   +H    +G        E+  
Sbjct: 109 ERGQMPESLLNECDEREVNEIGS-------HVKHCKGQTALHWCVGLGP-------EYLE 154

Query: 72  AVKL 75
            +K+
Sbjct: 155 MIKI 158

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.4 bits (119), Expect = 2e-09
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 4  EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
          E +A S M+     +  AA  G +E ++ L LEAG +       G  PI     
Sbjct: 2  EPAAGSSMEPSADWLATAAARGRVEEVRAL-LEAGANPNAPNSYGRRPIQVMMM 54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 9e-09
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                PV+ AA+EG L+ L  L   AG  L VR   G  P+  A ++G     +
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVL-HRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 4e-07
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLK 65
          N+       P+ +    G   V + L L  G          +  P+H AA+ G L  L 
Sbjct: 39 NAPNSYGRRPIQVMMM-GSARVAELL-LLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 1e-06
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + +      PV LA + GH +V ++L   A G    R  +        A  G  
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYL-RAAAGG--TRGSN---HARIDAAEGPS 152

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY---VRAKDGMAPIHAAAQMGCLSCLKWM 67
             +     LAA+ GHL VL  L  E   +     ++A++  A   AA   G  + + ++
Sbjct: 161 AENYHAFRLAAENGHLHVLNRL-CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK--DGMAPIHAAAQMGCLSCLK 65
                 +     LAA+ GHL VL  L  E   +  +     +       AA+ G L  L 
Sbjct: 122 KVIQAENYQAFRLAAENGHLHVLNRL-CELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 66  W 66
            
Sbjct: 181 R 181

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 16  TPVYLAAQEGH---LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
              ++AA  G    L+ L  L L +   + V   +       AA+ G L  L  +
Sbjct: 94  VICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV-------LEAGGSLYVRAKDGMAPIHAAAQ 57
            +   +    + LA + G+      L+       L    + Y+    G   + A A 
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVAL 369

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                +  T +++AA +G+ EVLK L ++A   + ++  DG  P+HAAA  G  
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLL-IQARYDVNIKDYDGWTPLHAAAHWGKE 245

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 7e-09
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N   +    P++ AA  G+L++ ++L +  G  +     +G  P+  A +      L+
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYL-ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N    + +T ++ A  + +++++KFL +E G ++     +G  P+HAAA  G L
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFL-VENGANINQPDNEGWIPLHAAASCGYL 119

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
           +++  TP+ +A +E   E+L+  V   G        D  A      ++      +W
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
           N +  +  TP++ AA  G  E  + L +E    +    K G      A +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRIL-VENLCDMEAVNKVGQTAFDVADE 274

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +D      A   G  E +  L LE G  +     DG+  +H A     +
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRL-LERGADINYANVDGLTALHQACIDDNV 86

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 9   SQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           ++   D+        +    +  ++L      +    AK G   +H AA  G  
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWL-NSGHINDVRHAKSGGTALHVAAAKGYT 212

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 6e-09
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          + Q D   T ++LAA  G    ++ L   AG  + V  + G   +H A ++   +C  
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKL-YAAGAGVLVAERGGHTALHLACRVRAHTCAC 95

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 7e-08
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            ++M    TP+  A    +  + + L    G        D ++P  ++      
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLL-RAHGAPEPEDGGDKLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 12  DNDV--TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +     TP++LA +     VL+ L L+AG     R   G  P+ +A      
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELL-LKAGADPTARMYGGRTPLGSALLRPNP 238

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
              ++  T ++LA    H   L FL+  + G  Y+  ++  G   +H AA +G  S ++
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLK 65
            ++  +  TP+++A      E+++ L  +AG  L       G  P+H A +    S L+
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLL-RDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 16/56 (28%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           S +   D    P  + +Q       +    +    L     DG  P+H A      
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 1/49 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
                   T ++LA +         L L+   S    A D         
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVL-LQPRPSHPRDASDTYLTQSQDC 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.0 bits (118), Expect = 6e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N   +  VT ++LA  +   EV +FL +E G S+ ++ K    P+H AA +G L
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFL-IENGASVRIKDKFNQIPLHRAASVGSL 153

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 8e-08
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVL-EAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   D+  TP ++A   G+LEV+K L        L      G+  +H A      
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
           D    TP++ A  EGH +    LV + G    +    G      A  
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.6 bits (104), Expect = 6e-07
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCL 61
             +   +  P++ AA  G L++++ L    G S  V  +D  G  P+  A   G  
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELL-CGLGKS-AVNWQDKQGWTPLFHALAEGHG 187

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 9e-07
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSL---YVRAKDGMAPIHAAAQMGCL 61
            +  +   P++ +      E+  FL L    ++         G  P H A  +G L
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFL-LSKMENVNLDDYPDDSGWTPFHIACSVGNL 85

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 2e-06
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           P++ A  E     ++ L+      L  + +DG  P+H +      
Sbjct: 4  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 49

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 1e-08
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+    + +P++ AA+ GH++++K L L  G S       G+ P+         S L 
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLL-LSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          D+   TP++ A   GHL+V++ L L+    +        +P+H AA+ G +
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELL-LQHKALVNTTGYQNDSPLHDAAKNGHV 89

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.5 bits (109), Expect = 6e-08
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 7  ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   ++   T +++A+ +G +  +++L L+ G    V+   G  P+H A   G L
Sbjct: 2  IDPFTNHRGETLLHIASIKGDIPSVEYL-LQNGSDPNVKDHAGWTPLHEACNHGHL 56

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   D  +T ++ A   GH E++KFLV + G ++     DG  P+H AA    +
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNV 116

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
             +  +  ++ EG  ++++ + +       +   +G+  +H A   G  
Sbjct: 35 PLPLALLLDSSLEGEFDLVQRI-IYEVDDPSLPNDEGITALHNAVCAGHT 83

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 4/52 (7%), Positives = 14/52 (26%), Gaps = 5/52 (9%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCL 61
          +      +    +    +      +  G    V+     +A +  ++  G  
Sbjct: 2  EITGQVSLPPGKRTNLRKTGSER-IAHGMR--VKFNPLPLALLLDSSLEGEF 50

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-----GMAPIHAAAQMGCLSCLK 65
           D+D  TP++ AA   +++V KFL +E+G +  V A         A      + G   C +
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFL-VESGAA--VFAMTYSDMQTAADKCEEMEEGYTQCSQ 156

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
                  +EG+ +  +FL       + +  K  +  +       
Sbjct: 141 ADKCEEMEEGYTQCSQFL-YGVQEKMGIMNKGVIYALWDYEPQN 183

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                PV+ AA+EG L+ L  L   AG  L V    G  P+  A + G     +
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVL-HRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
          +    +    +  AA  G +E ++ L LEAG       + G  PI     
Sbjct: 6  HMLGGSSDAGLATAAARGQVETVRQL-LEAGADPNALNRFGRRPIQVMMM 54

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 3e-07
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLK 65
          N+       P+ +    G  +V + L L  G          +  P+H AA+ G L  L 
Sbjct: 39 NALNRFGRRPIQVMMM-GSAQVAELL-LLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
           +        PV LA ++GH ++ ++L   A 
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYL-HAAT 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          N Q +   TP++LA      E+ + L L AG    +R   G  P+H A + GCL+ + 
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEAL-LGAGCDPELRDFRGNTPLHLACEQGCLASVG 95

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 3e-08
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV-----LEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
             +     TP++LA ++G L  +  L            L     +G   +H A+  G L 
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 63  CLK 65
            ++
Sbjct: 132 IVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           T ++LA    + +++  L L+ G  +      G +P          
Sbjct: 153 TALHLAVDLQNPDLVSLL-LKCGADVNRVTYQGYSPYQLTWGRPST 197

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 8e-06
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLK 65
            +   N  T ++LA+  G+L +++ L +  G  +  +   +G   +H A  +     + 
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELL-VSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 34.8 bits (81), Expect = 7e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)

Query: 10 QMDND-VTPVYLAAQEGH----LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          Q+  D  + ++LA         +EV++ +       L  +      P+H A      
Sbjct: 3  QLTEDGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQP 58

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 34.8 bits (81), Expect = 9e-04
 Identities = 4/54 (7%), Positives = 10/54 (18%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N       +P  L        + + L  +          +         +    
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQL-GQLTLENLQMLPESEDEESYDTESEFT 230

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMA-PIHAAAQMGCLSCLK 65
           +   D   T +Y A   G+++ +K   ++    L    K G     + A  +  +S + 
Sbjct: 89  SQFDDKGNTALYYAVDSGNMQTVKLF-VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 7   ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAP-IHAAAQMGCLSCL 64
            ++      ++ +++  + GH++++  L L+   S          P I  A     +  L
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILL-LDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 65  K 65
           +
Sbjct: 212 Q 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
               +  +  Y A  + ++ ++  L L AG        +   P+H AA +   
Sbjct: 25 FKADVHGHSASYYAIADNNVRLVCTL-LNAGAL--KNLLENEFPLHQAATLEDT 75

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           +N+  P++ AA     +++K L L +G         G   ++ A   G +  +K
Sbjct: 61  ENE-FPLHQAATLEDTKIVKIL-LFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 12  DND--VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                 T  Y A     + ++ +  L    S        ++ IH   + G +
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYF-LSEIPST-FDLAILLSCIHITIKNGHV 174

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 9/55 (16%)

Query: 8   NSQMDNDVTPV-YLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+       P   LA     +E+L+ L  +          +  +       +   
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQAL-FKYDI-------NIYSANLENVLLDDA 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 2e-08
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          +   +   TP++LA       V++ L + AG S     + G    H A +    +CL+
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLL-VTAGASPMALDRHGQTAAHLACEHRSPTCLR 96

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.5 bits (109), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLE-AGGSLYVRAKD--GMAPIHAAAQMGCLSCL 64
            +   +  T  +LA +      L+ L+   A G+L + A++  G+  +H A    C   +
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132

Query: 65  K 65
           +
Sbjct: 133 Q 133

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.5 bits (109), Expect = 1e-07
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+QM +  + ++ A+  G L +++ L + +G    ++      P+  A     +  L+
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTL-VRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +P+  A +   L +++ L L+ G ++  +   G + +H+A+  G L
Sbjct: 152 SPLIHAVENNSLSMVQLL-LQHGANVNAQMYSGSSALHSASGRGLL 196

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 6e-07
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 7  ANSQMDNDVTPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          A    ++  TP+++A  +G+L  +  LV    + G  L +       P+H A      
Sbjct: 2  ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 59

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCL 61
            ++  + +T +++A      E ++ L LE G  +     K G +P+  A +   L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLL-LERGADIDAVDIKSGRSPLIHAVENNSL 163

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N+   ++ TP+ LA       ++ +L ++AG    +  K   + +H AA       + 
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYL-MKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + Q ++  TP+ LAAQEG +EV+ +L ++ G S+             A      
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYL-IQQGASVEAVDATDHTARQLAQANNHH 359

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                T ++ AAQ  ++ ++K+LV E G +   + +DG  PI  AAQ G +
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLV--LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
                ++ + ++ AA      ++ +++   +  G +    ++GM  +   A         
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR---- 248

Query: 66  WMEHRPAVKL 75
             +   + KL
Sbjct: 249 --DQVASAKL 256

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 7/57 (12%)

Query: 12  DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY-------VRAKDGMAPIHAAAQMGCL 61
            ++ T ++  A     E  + L++                  D   P+  A      
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 1/50 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
           N      + P       G+  +  F              +    +H  A 
Sbjct: 55  NELQHYSLYPNPQGYGNGNDFLGDFN-HTNLQIPTEPEPESPIKLHTEAA 103

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 37.6 bits (88), Expect = 8e-05
 Identities = 5/54 (9%), Positives = 13/54 (24%), Gaps = 3/54 (5%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                     ++  A  G   + + +  E      +  +     +H  A     
Sbjct: 88  TEPEPESPIKLHTEAA-GSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSA 138

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +   +  +T ++ A    +  ++ FL + AG ++      G  P+H AA     
Sbjct: 48  SQPNEEGITALHNAICGANYSIVDFL-ITAGANVNSPDSHGWTPLHCAASCNDT 100

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N +  +  AA  G LEV++   ++         ++G+  +H A      
Sbjct: 20 NPLVLLLDAALTGELEVVQQA-VKEMNDPSQPNEEGITALHNAICGANY 67

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQM 58
           D+   TP++ AA      +   LV + G +++     DG          
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALV-QHGAAIFATTLSDGATAFEKCDPY 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 15/63 (23%), Positives = 25/63 (39%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
            +           T +  AA++GH+EVLK L+ E G  +      G   +  A      S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 63  CLK 65
            ++
Sbjct: 197 DVE 199

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
             +  N  TP  LAA  G +++LK   L  G  +      G      AA  G +  LK
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 1e-07
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N + +   TP+ LA ++ HL +++ L+ +    +     DG   +  A ++   
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
          +   TP++ A Q    ++++ L L  G    +R K+G  P   AA  G +  LK
Sbjct: 37 EGGWTPLHNAVQMSREDIVELL-LRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 9/63 (14%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVL---------EAGGSLYVRAKDGMAPIHAAAQM 58
           N       T    AA  G ++ LKFL           +         K G   +  AA+ 
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 59  GCL 61
           G +
Sbjct: 159 GHV 161

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD---GMAPIHAAAQMGCL 61
           D   +  A Q   +++++ L LE G +  V  ++   G  P+H A QM   
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQL-LEGGAN--VNFQEEEGGWTPLHNAVQMSRE 52

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 8   NSQMDNDVTPVYLAAQEGH----LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+  +     +  A           +   L L+ G  + VR + G  P+  A +   L
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLL-LDHGADVNVRGERGKTPLILAVEKKHL 232

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 9e-08
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++M +  TP+ LAA+     +L+ L + +   +      G + +H AA +  +
Sbjct: 86  DARMHDGTTPLILAARLAVEGMLEDL-INSHADVNAVDDLGKSALHWAAAVNNV 138

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 1e-07
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+  D   + ++ AA   +++    L L+ G +  ++      P+  AA+ G  
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVL-LKNGANKDMQNNREETPLFLAAREGSY 171

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N Q +   TP++ A       V + L+      L  R  DG  P+  AA++   
Sbjct: 52  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.9 bits (105), Expect = 4e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + Q + + TP++LAA+EG  E  K L L+   +  +       P   A +    
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 7e-07
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N       T ++LAA+    +  K L LEA     ++   G  P+HAA      
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRL-LEASADANIQDNMGRTPLHAAVSADAQ 71

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 1e-07
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++M +  TP+ LAA+     +L+ L + +   +      G + +H AA +  +
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDL-INSHADVNAVDDLGKSALHWAAAVNNV 170

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N Q +   TP++ A       V + L+      L  R  DG  P+  AA++   
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 4e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + Q + + TP++LAA+EG  E  K L L+   +  +       P   A +    
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQERMHH 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 7e-07
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N       T ++LAA+    +  K L LEA     ++   G  P+HAA      
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRL-LEASADANIQDNMGRTPLHAAVSADAQ 103

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+  D   + ++ AA   +++    L L+ G +  ++      P+  AA+ G  
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVL-LKNGANKDMQNNREETPLFLAAREGSY 203

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 9  SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY-VRAKDGMAPIHAAAQMGCL 61
          S     +       +E    V+    +  G SL+    + G   +H AA+    
Sbjct: 18 SCSGGGLETGNSEEEEDAPAVISDF-IYQGASLHNQTDRTGETALHLAARYSRS 70

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 1e-07
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + +       ++ AA+ G L+ L+ L LE    + +   +G  P+H AA+ G L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTL-LEFQADVNIEDNEGNLPLHLAAKEGHL 116

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 7e-07
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           DN+   P++LAA+EGHL V++FLV     ++  R   G      A   G  
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N+Q     T + +    G+ E+ + L L  G +  ++ + G A IH AA+ G L
Sbjct: 32 NAQNGFGRTALQVMK-LGNPEIARRL-LLRGANPDLKDRTGFAVIHDAARAGFL 83

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.5 bits (91), Expect = 3e-05
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
          +     +  AA  G LE L  L L+   ++  +   G   +     
Sbjct: 3  EPWGNELASAAARGDLEQLTSL-LQNNVNVNAQNGFGRTALQVMKL 47

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
               +  T ++ A   GH E+++FL L+ G  +  +   G +P+H AA  G    +K +
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N + D   +P+++AA  G  E++K L L  G  +    ++G  P+H AA          +
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKAL-LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           +    + +++   D T ++ AA +G+L+++  L L    S  ++  +G  P+H A     
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-LFYKASTNIQDTEGNTPLHLACDEER 184

Query: 61  LSCLKWM 67
           +   K++
Sbjct: 185 VEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++    LA      E+ + + L          +D    +H A   G  
Sbjct: 5  VSNIMICNLAYSGKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHT 53

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
           + Y+ S N Q     TP++LA  E  +E  KFLV   G S+Y+  K+   P+  A 
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVAK 213

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++   D TP+++AA EGH  +++ L L+ G  +  +    M  +H A +    
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVL-LKHGADVNAKDMLKMTALHWATEHNHQ 113

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.5 bits (104), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          D    +P++LAAQ GH    + L L AG S   R K    P+H AA  G  
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVL-LRAGVSRDARTKVDRTPLHMAASEGHA 80

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 1e-06
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           D   +T ++ A +  H EV++ L ++ G  ++ ++K        +   G  
Sbjct: 97  DMLKMTALHWATEHNHQEVVELL-IKYGADVHTQSKFCKTAFDISIDNGNE 146

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 35.1 bits (82), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 12/51 (23%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-----KDGMAPIHAAAQMGCL 61
            +  AA+ G  + ++ L +  G      A       G +P+H AAQ G  
Sbjct: 4  KKLLEAARAGQDDEVRIL-MANG------APFTTDWLGTSPLHLAAQYGHF 47

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
              TP + AA++   + L  L+      +    ++G   +   A +G   C++
Sbjct: 43 SEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVR 94

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 8e-07
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           T +++AA     EV++ L +E G  + V  + G+  +  A ++   +   
Sbjct: 113 TALHMAAGYVRPEVVEAL-VELGADIEVEDERGLTALELAREILKTTPKG 161

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLK 65
           ++  +N  T +   A  G  + ++ L  EAG  L  R  + G+  +H AA       ++
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLL-AEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 4/64 (6%)

Query: 2  TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            ++  +           +  ++GH              +     +   P   AA+    
Sbjct: 3  VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS-SYIAADV---VSEYETPWWTAARKADE 58

Query: 62 SCLK 65
            L 
Sbjct: 59 QALS 62

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 5e-07
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
              TP + AA++   + L  L+      +    ++G   +   A +G   C++
Sbjct: 42 SEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVR 93

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLK 65
           ++  +N  T +   A  G  + ++ L  EAG  L  R  + G+  +H AA       ++
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLL-AEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.3 bits (98), Expect = 3e-06
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 8   NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           + +     +T +++AA     EV++ L +E G  + V  + G+  +  A ++   +   
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEAL-VELGADIEVEDERGLTALELAREILKTTPKG 160

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 4/62 (6%)

Query: 4  EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
          ++  +           +  ++GH              +     +   P   AA+      
Sbjct: 4  KIIGSRTAGEGAMEYLIEWKDGHSPSWVPS-SYIAADV---VSEYETPWWTAARKADEQA 59

Query: 64 LK 65
          L 
Sbjct: 60 LS 61

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.1 bits (103), Expect = 6e-07
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 7  ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                   TP++ AA    + V+++L L+ G  ++ + K G+ P+H A   G  
Sbjct: 35 CRDIEGRQSTPLHFAAGYNRVSVVEYL-LQHGADVHAKDKGGLVPLHNACSYGHY 88

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 1e-06
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
                +  AA+ G +E +K L      +          P+H AA    +
Sbjct: 6  SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           +++    + P++ A   GH EV + L ++ G  + V       P+H AA  G  
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADLWKFTPLHEAAAKGKY 121

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 38.1 bits (90), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
           D    TP++ AA +G  E+ K L L+ G     + +DG  P+    
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLL-LQHGADPTKKNRDGNTPLDLVK 149

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 8e-07
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          N++ +  +TP+YLA   GHLE+++ L L+ G  +      G  P+H AA +G L
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVL-LKNGADVNAVDAIGFTPLHLAAFIGHL 93

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N+      TP++LAA  GHLE+ + L L+ G  +  + K G      +   G  
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVL-LKHGADVNAQDKFGKTAFDISIGNGNE 126

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 7e-06
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          +    +    +  AA+ G  + ++ L +  G  +  + + G+ P++ A   G L
Sbjct: 8  HHHGSDLGKKLLEAARAGQDDEVRIL-MANGADVNAKDEYGLTPLYLATAHGHL 60

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.0 bits (100), Expect = 2e-06
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
             +     T +  A +   L + + L L  G ++  +   G  P+  +   G  
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKL-LSKGSNVNTKDFSGKTPLMWSIIFGYS 114

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 4e-06
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 4  EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          +   N +   + TP+ +A   G    +  L +E    L  +  +G   +  A +   L
Sbjct: 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKL-VENFDKLEDKDIEGSTALIWAVKNNRL 81

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.8 bits (97), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           N++  +  TP+  +   G+ E+  FL LE G ++  R  +G  P+  A++ G  
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFL-LEHGANVNDRNLEGETPLIVASKYGRS 147

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 12  DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           + +  TP+ +A++ G  E++K L LE G  +  R   G+    +A   G  
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKL-LELGADISARDLTGLTAEASARIFGRQ 180

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 8/44 (18%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           TP+ LAA  G + VL ++ L+                HAAA   
Sbjct: 235 TPLALAASSGKIGVLAYI-LQRE-------IHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMG 59
            P+ LAA    L ++KFL+  +     + A+D  G   +HA  ++ 
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 15/74 (20%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--------------GMAP 51
           S         T +++A +  ++ ++  L +E G  +   A                G  P
Sbjct: 93  SYTDSYYKGQTALHIAIERRNMTLVTLL-VENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 52  IHAAAQMGCLSCLK 65
           +  AA    L+ +K
Sbjct: 152 LSLAACTNQLAIVK 165

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 8   NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
           N  +D    TP++      +LE++K L ++ G +       G + +  A +  
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHL-VKHGSNRLYGDNMGESCLVKAVKSV 175

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.4 bits (94), Expect = 9e-06
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM 58
           N+Q  N  T + +AA+ G++ ++  L L+ G   ++  K G+ P+   A +
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDAL-LDYGADPFIANKSGLRPVDFGAGL 326

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
           + +   +    + + + +   +G L++   L         +    G+ P+  AA+ G + 
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARL-CPTVQLEEISNHQGLTPLKLAAKEGKIE 235

Query: 63  CLK 65
             +
Sbjct: 236 IFR 238

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGC 60
            P+ LAA     +V+ +L+        + A D  G   +HA   +  
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
          +P+ LAA+E  ++ L  L+   G  ++ R   G   +H AA    L
Sbjct: 5  SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNL 50

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
            P+  AA  G  E+++ L +E G  +  +   G   +H       
Sbjct: 123 HPLSFAACVGSEEIVRLL-IEHGADIRAQDSLGNTVLHILILQPN 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-----KDGMAPIHAAAQMGCL 61
          + +     T +++AA   +LE    L +EA   L          +G   +H A     +
Sbjct: 31 HQRGAMGETALHIAALYDNLEAAMVL-MEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 12/68 (17%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLV------------LEAGGSLYVRAKDGMAPIH 53
              S++    T +++A    ++ +++ L+                   +     G  P+ 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 54  AAAQMGCL 61
            AA +G  
Sbjct: 127 FAACVGSE 134

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
            +     E   ++  FL +  G  +  R K+G        Q G        E
Sbjct: 44 DVLRNNNDEARYKISMFL-INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 8   NSQMDNDVTPVYLAAQEGHLE------VLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            +        V+       ++      + K +  ++G  L ++ K G+  +    +    
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 62  SCLK 65
             LK
Sbjct: 168 IALK 171

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 7/67 (10%)

Query: 8   NSQMDNDVTPVYLAAQEGH------LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
            S+     T  +   Q G        E+ K   LE G  +    K     +        +
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTTELCKIF-LEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 62  SCLKWME 68
              + + 
Sbjct: 128 DENEMIP 134

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
           +++  +  T ++ AA     + LK L L+    +    + G   +  A +     C
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLL-LKGRALVGTVNEAGETALDIARKKHHKEC 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
           + Q     T ++      + E LK L L    S+ +  + G  P+  A ++    C
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLL-LRGKASIEIANESGETPLDIAKRLKHEHC 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 16  TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMG 59
            P+ LAA      ++ +L         +R +D  G   +HA   + 
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.88
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.8
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.8
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.8
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.79
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.79
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.79
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.78
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.78
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.78
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.78
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.77
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.76
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.76
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.76
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.76
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.76
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.75
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.75
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.75
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.75
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.75
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.74
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.74
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.74
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.74
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.73
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.73
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.73
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.73
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.73
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.72
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.72
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.72
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.72
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.72
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.72
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.71
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.71
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.71
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.71
2rfa_A	232	Transient receptor potential cation channel subfa	99.71
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.7
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.7
2pnn_A	273	Transient receptor potential cation channel subfa	99.7
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.7
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.7
2etb_A	256	Transient receptor potential cation channel subfam	99.7
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.7
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.7
2rfa_A	232	Transient receptor potential cation channel subfa	99.7
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
2etb_A	256	Transient receptor potential cation channel subfam	99.69
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.69
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.69
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.69
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.69
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.69
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.69
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.68
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.68
2pnn_A	273	Transient receptor potential cation channel subfa	99.68
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.67
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.67
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.67
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.66
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.66
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.66
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.66
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.66
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.65
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.65
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.64
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.63
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.63
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.61
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.61
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.58
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.58
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.41
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.34

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=8.3e-22  Score=87.40  Aligned_cols=70  Identities=39%  Similarity=0.577  Sum_probs=66.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        23 ~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            468899999999999999999999999999998 8999999999999999999999999999999999886

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.88  E-value=4.3e-22  Score=96.61  Aligned_cols=69  Identities=28%  Similarity=0.442  Sum_probs=40.2

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|+++|.++..|+||||+|+..|+.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        92 ~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           92 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45555555556666666666666666666655 5556665556666666666666666666666665553

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=3.3e-21  Score=93.49  Aligned_cols=70  Identities=30%  Similarity=0.482  Sum_probs=61.1

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus        58 ~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hcccchhhhccCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            357888888888999999999999999999888 8888888888889999999999999999999988764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=6.4e-20  Score=84.71  Aligned_cols=70  Identities=27%  Similarity=0.464  Sum_probs=65.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|.+++..+..|.||||+|+..++.+++++|+ +.+++++.++..|.||||+|+..++.+++++|+++++
T Consensus        28 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga   97 (123)
T 3aaa_C           28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA   97 (123)
T ss_dssp             HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            457889999999999999999999999999998 8999999999999999999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.81  E-value=8.8e-20  Score=93.67  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.+|..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       140 ~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga  209 (269)
T 4b93_B          140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLL-QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA  209 (269)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-HCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            468899999999999999999999999999998 8999999999999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=3.9e-19  Score=89.75  Aligned_cols=71  Identities=27%  Similarity=0.372  Sum_probs=66.6

Q ss_pred             CccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         1 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +..|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++++
T Consensus        57 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  127 (239)
T 1ycs_B           57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA  127 (239)
T ss_dssp             TSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3568899999999999999999999999999998 8899999999999999999999999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.81  E-value=9.2e-20  Score=85.44  Aligned_cols=69  Identities=26%  Similarity=0.282  Sum_probs=57.1

Q ss_pred             cccCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDN-DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++.++.. |.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        66 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHH-HTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56778888887 888888888888888888887 7888888888888888888888888888888887664

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.1e-19  Score=93.69  Aligned_cols=72  Identities=15%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      .+|+++|.+|..|.||||+|+..|+.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus       193 ~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            357889999999999999999999999999998 899999999999999999999999999999999877643

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.80  E-value=4.7e-19  Score=83.03  Aligned_cols=70  Identities=29%  Similarity=0.491  Sum_probs=55.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.+++++.++..|.||||+|+..++.+++++|+++++
T Consensus        35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~  104 (136)
T 2jab_A           35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA  104 (136)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            356777777778888888888888888888887 7788888788888888888888888888888887653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.80  E-value=3.1e-19  Score=85.26  Aligned_cols=70  Identities=29%  Similarity=0.369  Sum_probs=64.3

Q ss_pred             ccccCcccCCCCCCc-HHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVT-PVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t-~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.| |||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        65 ~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga  135 (156)
T 1bi7_B           65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG  135 (156)
T ss_dssp             TTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence            468899999999998 999999999999999998 8899999999999999999999999999999998875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.80  E-value=3.7e-19  Score=83.35  Aligned_cols=70  Identities=23%  Similarity=0.311  Sum_probs=58.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.++.++.++..|.||||+|+..++.+++++|+++++
T Consensus        31 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  100 (137)
T 3c5r_A           31 QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA  100 (137)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            356788888888888888888888888888887 7888888888888888888888888888888888754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.80  E-value=5.2e-19  Score=82.85  Aligned_cols=69  Identities=22%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++.|
T Consensus        68 ~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           68 KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            467899999999999999999999999999998 899999999999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.9e-19  Score=82.20  Aligned_cols=71  Identities=31%  Similarity=0.522  Sum_probs=63.9

Q ss_pred             CccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         1 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +..|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        29 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga   99 (115)
T 2l6b_A           29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA   99 (115)
T ss_dssp             TTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-TTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            3567888889999999999999999999999998 8899999999999999999999999999999998874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.79  E-value=8.2e-19  Score=88.35  Aligned_cols=70  Identities=17%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|++.++
T Consensus        42 ~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            357889999999999999999999999999998 8899999999999999999999999999999998864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.79  E-value=1.3e-18  Score=83.52  Aligned_cols=70  Identities=24%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.+++++.++..|.||||+|+..++.+++++|+++++
T Consensus        63 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHH-hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            356778888888888888888888888888887 7888888888888888888888888888888888763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.79  E-value=1.6e-18  Score=82.48  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=60.2

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++++
T Consensus        55 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            457788888888899999999999999998888 8888888888889999999999899999999888763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.78  E-value=1.4e-18  Score=83.07  Aligned_cols=69  Identities=22%  Similarity=0.352  Sum_probs=42.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ +.+.+++.++..|.||||+|+..++.+++++|++.++
T Consensus        59 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  127 (162)
T 1ihb_A           59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  127 (162)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence            35555556666666666666666666666665 5566666666666666666666666666666665554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.78  E-value=5.5e-19  Score=96.74  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.+|..|.||||+|+..|+.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       195 ~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHH-HTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            468999999999999999999999999999998 8999999999999999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.78  E-value=8.8e-19  Score=90.11  Aligned_cols=70  Identities=21%  Similarity=0.307  Sum_probs=47.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLE-AGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      +|+++|.+|..|.||||+|+..++.+++++|+ . .|++++.++..|.||||+|+..|+.+++++|+++..+
T Consensus       205 ~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll-~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          205 CEADVNVQDDDGSTALMCACEHGHKEIAGLLL-AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            46666666666677777777777766666666 4 6666666666667777777766677777766665544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.78  E-value=1.9e-18  Score=82.27  Aligned_cols=68  Identities=34%  Similarity=0.454  Sum_probs=59.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|++.
T Consensus        56 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            357888888888999999999999999999888 88888888888899999999999999999998876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.78  E-value=1.7e-18  Score=82.78  Aligned_cols=70  Identities=29%  Similarity=0.386  Sum_probs=64.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS-LYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ ..++. .+.++..|.||||+|+..++.+++++|+++|+
T Consensus        91 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            468899999999999999999999999999998 77776 58899999999999999999999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.78  E-value=2.4e-18  Score=83.59  Aligned_cols=69  Identities=23%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++++
T Consensus        61 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  129 (179)
T 3f6q_A           61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA  129 (179)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45666666667777777777777777777776 6677777777777777777777777777777776653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.78  E-value=2.8e-18  Score=83.75  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+++..+..|.||||+|+..++.+++++|+ ..|++++.++ ..|.||||+|+..++.+++++|+++++
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  134 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA  134 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCC
Confidence            7789999999999999999999999999998 8999999888 889999999999999999999999764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=2.1e-18  Score=79.37  Aligned_cols=67  Identities=39%  Similarity=0.602  Sum_probs=36.8

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||+|+|+..++.+++++|+ ..+.+++.++..|.||+++|+..++.+++++|+++|
T Consensus        58 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCcccCCCCCcHHHHHHHcChHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            4445555555555555555555555555554 555555555555555555555555555555555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=3.8e-18  Score=86.51  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++++|..+..|.||||+|+..|+.+++++|+ ..|++++.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  135 (244)
T 3ui2_A           67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA  135 (244)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            7889999999999999999999999999998 8999999888 889999999999999999999999864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=2.5e-18  Score=78.22  Aligned_cols=64  Identities=30%  Similarity=0.422  Sum_probs=38.6

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM   67 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   67 (76)
                      .|++++.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|
T Consensus        46 ~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            34555555666666666666666666666665 55666666666666666666666666665554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=3.7e-18  Score=75.51  Aligned_cols=59  Identities=44%  Similarity=0.680  Sum_probs=54.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga   59 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   59 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4789999999999999999998 8999999999999999999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.77  E-value=1.4e-18  Score=90.97  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.++..|.||||+|+..++.++++.|+...+.+++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       227 ~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  297 (337)
T 4g8k_A          227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  297 (337)
T ss_dssp             HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45788888888889999999999999888888744578888888889999999999999999999888874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=1.8e-18  Score=86.35  Aligned_cols=70  Identities=23%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEA-GGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++.++..|.||||+|+..++.+++++|+ .. ++.++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  164 (222)
T 3ehr_A           94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF-TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA  164 (222)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHT-TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            357889999999999999999999999999998 66 99999999999999999999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.77  E-value=4.9e-18  Score=81.97  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=39.2

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|++.+
T Consensus        58 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           58 WGADPHILAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCchhhcccCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            34555555555555665555555555555555 555555555555556666666555666665555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.76  E-value=4.9e-19  Score=82.94  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+. ++.+++++|+ +.+++++.++.. |.||||+|+..++.+++++|+++++
T Consensus        34 ~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  102 (136)
T 1d9s_A           34 AGADPNALNRFGRRPIQVMMM-GSAQVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA  102 (136)
T ss_dssp             TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHH-HHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC
T ss_pred             cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            467777777778888888887 8888888877 777788888877 7888888888888888888887763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.76  E-value=7.5e-18  Score=81.26  Aligned_cols=67  Identities=28%  Similarity=0.458  Sum_probs=32.9

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|++++
T Consensus        70 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  136 (169)
T 2y1l_E           70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG  136 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3444444444455555555555555555444 444444444444555555555555555555554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=90.40  Aligned_cols=69  Identities=14%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|+++|.+|..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++.+
T Consensus       214 ~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            357889999999999999999999999999998 889999999999999999999999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.76  E-value=6.1e-18  Score=82.87  Aligned_cols=68  Identities=22%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++++
T Consensus        90 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  157 (192)
T 2rfm_A           90 KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG  157 (192)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            34555555556666666666666666666665 556666666666666666666666666666666554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.76  E-value=1.4e-17  Score=78.01  Aligned_cols=67  Identities=19%  Similarity=0.377  Sum_probs=60.4

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |+|+ ..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA   67 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5677 67889999999999999999999998 8999999999999999999999999999999999864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.76  E-value=5.4e-18  Score=86.61  Aligned_cols=69  Identities=22%  Similarity=0.219  Sum_probs=52.6

Q ss_pred             cccCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDN-DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+.. |.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       180 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  249 (282)
T 1oy3_D          180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (282)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCC
Confidence            46677776643 778888888888888888777 7777777777778888888888888888888877764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.76  E-value=7e-18  Score=86.97  Aligned_cols=70  Identities=26%  Similarity=0.407  Sum_probs=65.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++..+..|.||||+|+..|+.+++++|+ ..|++++..+..|.||||+|+..|+.+++++|+++++
T Consensus        61 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~  130 (299)
T 1s70_B           61 ERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA  130 (299)
T ss_dssp             HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            357889999999999999999999999999998 8999999999999999999999999999999999864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.75  E-value=9e-18  Score=80.99  Aligned_cols=69  Identities=22%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||+++|+..++.+++++|++.|
T Consensus       101 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            467889999999999999999999999999998 899999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.75  E-value=9.9e-18  Score=80.57  Aligned_cols=67  Identities=16%  Similarity=0.251  Sum_probs=38.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|++++
T Consensus        59 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           59 GADPQLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4555555555555555555555555555555 555555555555555555555555555555555544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.75  E-value=8.5e-18  Score=85.32  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       145 ~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            356777888888888888888888888888887 7788888888888888888888888888888888764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.75  E-value=9.6e-18  Score=87.64  Aligned_cols=70  Identities=21%  Similarity=0.293  Sum_probs=66.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            357889999999999999999999999999998 9999999999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.75  E-value=8e-18  Score=81.21  Aligned_cols=69  Identities=22%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||+|+|+..++.+++++|++++
T Consensus        90 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            468899999999999999999999999999998 899999999999999999999999999999998865

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.74  E-value=1.6e-17  Score=79.08  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=62.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ .. ++++.++..|.||+|+|+..++.+++++|+++
T Consensus        89 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHH-hc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            468899999999999999999999999999998 66 88999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.74  E-value=2.1e-17  Score=75.97  Aligned_cols=70  Identities=39%  Similarity=0.577  Sum_probs=64.8

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|++++..+..|.+|||+|+..++.+++++|+ ..+..++.++..|.||||+|+..++.+++++|++++.
T Consensus        23 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~   92 (126)
T 1n0r_A           23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (126)
T ss_dssp             HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            357788889999999999999999999999998 8999999999999999999999999999999999764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.74  E-value=9.7e-18  Score=82.15  Aligned_cols=69  Identities=22%  Similarity=0.289  Sum_probs=65.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||+|+|+..++.+++++|++.+
T Consensus       122 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            468899999999999999999999999999998 889999999999999999999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.74  E-value=5.4e-17  Score=78.83  Aligned_cols=68  Identities=25%  Similarity=0.359  Sum_probs=64.0

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++++
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   96 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA   96 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5678889999999999999999999999998 8999999999999999999999999999999999864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.73  E-value=1.2e-17  Score=91.56  Aligned_cols=70  Identities=24%  Similarity=0.367  Sum_probs=64.0

Q ss_pred             ccccCcccC------CCCCCcHHHHHHH---cCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQ------MDNDVTPVYLAAQ---EGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~------~~~~~t~l~~a~~---~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..|+++|..      +..|.||||+|+.   .++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       153 ~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll-~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  231 (497)
T 3lvq_E          153 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA  231 (497)
T ss_dssp             HTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHH-HHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCC
T ss_pred             hhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            357777766      7889999999977   89999999998 8999999999999999999999999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.73  E-value=3.6e-17  Score=81.43  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|++++
T Consensus       115 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  181 (223)
T 2f8y_A          115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  181 (223)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            4444444444555555555555555555544 444444444444555555555555555555554443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.73  E-value=3.7e-17  Score=77.71  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM   67 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   67 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||+|+|+..|+.+++++|
T Consensus        88 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            468899999999999999999999999999998 88999999999999999999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=84.29  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .|.+.+..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|++.
T Consensus       172 ~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll-~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  238 (276)
T 4hbd_A          172 LGNINAKASQAGQTALMLAVSHGRVDVVKALL-ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAV  238 (276)
T ss_dssp             HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTS
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            35566777888999999999999999999998 89999999999999999999999999999999983

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=2.8e-17  Score=87.63  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             cccCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQM--DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|+++|..+  ..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++++
T Consensus       222 ~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Ga  292 (368)
T 3jue_A          222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA  292 (368)
T ss_dssp             TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcC
Confidence            466676666  66777777777777777777776 6777777777777777777777777777777777653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.73  E-value=3.7e-17  Score=81.39  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+|++++.++..|.||+|+|+..++.+++++|+ +.|++++.++..|.||+++|+..++.+++++|+++++.
T Consensus       146 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          146 KNGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            357788888888888888888888888888887 78888888888888888888888888888888888764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.73  E-value=2.6e-17  Score=83.99  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++.++..|.||||+|+..++.+++++|++..+.+++.++..|.||||+|+..++.+++++|+++|+
T Consensus       207 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            35788888888999999999999999999999833888999999999999999999999999999998875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.73  E-value=3.4e-17  Score=84.48  Aligned_cols=65  Identities=25%  Similarity=0.379  Sum_probs=60.0

Q ss_pred             cccCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQE---GHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++..+..|.||||+|+..   ++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll-~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  229 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA  229 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHH-HCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            445578899999999999   8999999998 8999999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.73  E-value=2.9e-17  Score=78.92  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=64.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+.+++..+..|.||||+|+..++.+++++|+ +.+++++..+..|.||||+|+..++.+++++|++.++
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (167)
T 3v31_A           25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV   93 (167)
T ss_dssp             HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            46788889999999999999999999999998 8899999999999999999999999999999998753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.72  E-value=3.5e-17  Score=81.64  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG-GSLYVRAKDGMAPIHAAAQMGCLSCLKWME   68 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   68 (76)
                      +|++++.++..|.||||+|+..++.+++++|+ ..+ .+++.++..|.||||+|+..++.+++++|+
T Consensus       129 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLC-GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34555555555556666666555566555555 444 555555555666666666666666665555

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.72  E-value=6.7e-17  Score=81.10  Aligned_cols=70  Identities=16%  Similarity=0.297  Sum_probs=59.0

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+ ..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       137 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  207 (241)
T 1k1a_A          137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA  207 (241)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            3567777777 67888999998888888888887 7888888888888999999998889999988888764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.72  E-value=7.1e-18  Score=84.75  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         8 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +..+..|.||||+|+..++.+++++|+ ..|++++.++. .|.||||+|+..++.+++++|+++|
T Consensus       111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D          111 KATNYNGHTCLHLASIHGYLGIVELLV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            444445555555555555555555555 55555555554 5555555555555555555555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.72  E-value=1.2e-16  Score=83.49  Aligned_cols=67  Identities=19%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +.+++..+..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|++++
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  114 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG  114 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC
Confidence            4555666666666666666666666666666 566666666666666666666666666666666654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.72  E-value=6.6e-17  Score=80.83  Aligned_cols=69  Identities=20%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       128 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  196 (231)
T 3aji_A          128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA  196 (231)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            46667777777777777777777777777776 6777777777777788888877777777777777653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.72  E-value=1.8e-16  Score=76.06  Aligned_cols=68  Identities=21%  Similarity=0.411  Sum_probs=62.6

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+++..+..|.||||+|+..++.+++++|+ +.+.+++.++..|.||||+|+..++.+++++|++.++
T Consensus        32 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   99 (165)
T 3twr_A           32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA   99 (165)
T ss_dssp             TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCccccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Confidence            4566777788999999999999999999998 8999999999999999999999999999999999864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.72  E-value=5.6e-18  Score=80.88  Aligned_cols=69  Identities=20%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMA-PIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~t-pl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+ .++.+++++|+ ..|++++.++..|.| |||+|+..++.+++++|+++++
T Consensus        33 ~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll-~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga  102 (156)
T 1bi7_B           33 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA  102 (156)
T ss_dssp             TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCC
Confidence            467889999999999999985 89999999998 889999999999998 9999999999999999998763

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.71  E-value=3.7e-17  Score=87.92  Aligned_cols=69  Identities=23%  Similarity=0.396  Sum_probs=54.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       300 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga  368 (437)
T 1n11_A          300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA  368 (437)
T ss_dssp             HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC
Confidence            46677777777888888888888888888887 7788888888888888888888888888888887764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=6.9e-17  Score=79.38  Aligned_cols=66  Identities=20%  Similarity=0.218  Sum_probs=41.0

Q ss_pred             cCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGH-----LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ++++.++..|.||||+|+..+.     .+++++|+ +.|++++.++..|.||+|+|+..++.+++++|+++|
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM-ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            5555666666666666666555     56666665 566666666666666666666666666666666553

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.71  E-value=1.8e-16  Score=79.08  Aligned_cols=69  Identities=28%  Similarity=0.360  Sum_probs=61.0

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK   74 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   74 (76)
                      .+++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|++.+..+
T Consensus        98 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  166 (228)
T 2dzn_A           98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA  166 (228)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             cccccCCcCCCCHHHHHHHcCCHhHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            778888888999999999999999999998 889999999999999999999999999999999887443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=1.7e-16  Score=77.98  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=51.5

Q ss_pred             cCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|++.+.
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~   96 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT   96 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            467777777888888888888888888887 7777777777778888888888888888887775443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.71  E-value=7.7e-17  Score=83.13  Aligned_cols=68  Identities=22%  Similarity=0.349  Sum_probs=44.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .|++++..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|++.+
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG  148 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence            35566666666666666666666666666665 566666666666666666666666666666666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=82.37  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=41.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      ..|+++|..+..|.||||+|+..|+.+++++|+ ..+++++.++..|.||+++++..++.+++++|++.
T Consensus        74 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  141 (269)
T 4b93_B           74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS  141 (269)
T ss_dssp             -CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCcCccCCCCCCccccccccChHHHHHHHHHC
Confidence            457788888888888888888888877777776 55554444444444444444444444444444433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.71  E-value=4.4e-17  Score=81.58  Aligned_cols=68  Identities=13%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHH----HHHHHhcCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVL----KFLVLEAGGSL------YVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~----~~l~~~~~~~~------~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++.+|..|.||||+|+..++.+++    ++|+ ..++..      +.++..|.||||+|+..|+.+++++|++++
T Consensus       143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll-~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL-SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHH-HTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHH-hcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4566666666666666666666666655    5555 555554      355666666666666666666666666654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.70  E-value=6.9e-17  Score=84.13  Aligned_cols=69  Identities=25%  Similarity=0.353  Sum_probs=62.7

Q ss_pred             cccCccc------CCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANS------QMDNDVTPVYLAAQE---GHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|++++.      .+..|.||||+|+..   ++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       173 ~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  250 (301)
T 2b0o_E          173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA  250 (301)
T ss_dssp             TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4667766      578899999999997   8999999998 8899999999999999999999999999999999874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.70  E-value=6.6e-17  Score=83.43  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG-MAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g-~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..| .||||+|+..|+.+++++|++.++.
T Consensus        83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A           83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence            357778888888888888888888888888887 7788888888777 7888888888888888888887653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.70  E-value=2.3e-17  Score=84.37  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCcc-------ccCCCCCcHHHHHHHcCCHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGH---------LEVLKFLVLEAGGSLY-------VRAKDGMAPIHAAAQMGCLSCLKW   66 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~l~~~~~~~~~-------~~~~~g~tpl~~a~~~~~~~~~~~   66 (76)
                      +|++++.++..|.||||+|+..++         .+++++|+ ..|++++       .++..|.||||+|+..|+.+++++
T Consensus       173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~  251 (273)
T 2pnn_A          173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL-ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY  251 (273)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH-HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHH
Confidence            689999999999999999999888         78899998 8888775       488999999999999999999999


Q ss_pred             HHhCCCcc
Q psy14142         67 MEHRPAVK   74 (76)
Q Consensus        67 l~~~~~~~   74 (76)
                      |+++|+.+
T Consensus       252 Ll~~ga~d  259 (273)
T 2pnn_A          252 ILQREIHE  259 (273)
T ss_dssp             HHHHHTC-
T ss_pred             HHHCCCCC
Confidence            99998854

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.70  E-value=1.3e-16  Score=79.99  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=51.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+++++
T Consensus       133 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  201 (237)
T 3b7b_A          133 KGSDINIRDNEENICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS  201 (237)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC
Confidence            46667777777777777777777777777776 7777777777777777777777777777777777653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.70  E-value=3.4e-17  Score=86.50  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=44.7

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+++++
T Consensus       204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          204 LDYANKQGNSHLHWAILINWEDVAMRFV-EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            6666666677777777777777777666 6666666666677777777777777777777766543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.70  E-value=2.8e-17  Score=83.38  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             cccCcccCCCCCCcHHHHHHH--cCCHH-------HHHHHHHhcCCCc-------cccCCCCCcHHHHHHHcCCHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQ--EGHLE-------VLKFLVLEAGGSL-------YVRAKDGMAPIHAAAQMGCLSCLKW   66 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~l~~~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~~~   66 (76)
                      +|++++.++..|.||||+|+.  .++.+       ++++|+ ..|+++       +.++..|.||||+|+..|+.+++++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  239 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL-QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH  239 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH-HcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence            789999999999999999999  78888       999998 888888       8899999999999999999999999


Q ss_pred             HHhCCC
Q psy14142         67 MEHRPA   72 (76)
Q Consensus        67 l~~~~~   72 (76)
                      |++++.
T Consensus       240 Ll~~g~  245 (256)
T 2etb_A          240 ILQREF  245 (256)
T ss_dssp             HHHHHH
T ss_pred             HHhCCC
Confidence            998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.70  E-value=1.7e-16  Score=84.38  Aligned_cols=68  Identities=22%  Similarity=0.322  Sum_probs=57.9

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +++++..+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+++++
T Consensus       303 ~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             CCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            3788888888888888888888888888887 7888888888888888888888888888888888765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.70  E-value=2.7e-16  Score=80.30  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+++++..+..|.||||+|+..++.+++++|+ ..|+.++.++.. |.||||+|+..++.+++++|+++|+
T Consensus       147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  216 (282)
T 1oy3_D          147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA  216 (282)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            35678888999999999999999999999998 899999988854 9999999999999999999999864

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.70  E-value=2.2e-16  Score=79.02  Aligned_cols=68  Identities=21%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCc-----cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSL-----YVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-----~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |++++.++..|.||||+|+..++.+++++|+ +.++..     +..+..|.||||+|+..|+.+++++|++.++
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   99 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA   99 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCC
Confidence            7899999999999999999999999999998 777765     5567789999999999999999999999864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.70  E-value=4.8e-17  Score=85.92  Aligned_cols=70  Identities=19%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS-----LYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~-----~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ ..++.     ++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       161 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          161 QLGASPTAKDKADETPLMRAMEFRNREALDLMM-DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-hcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            357888888888999999999999999999988 77777     88888889999999999999999999988764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=1.1e-16  Score=72.76  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=57.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ....+.+|.++||+|+..++.+++++|+ ..+++++.++..|.||||+|+..++.+++++|+++++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga   81 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA   81 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3455778999999999999999999998 8899999999999999999999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=6.5e-17  Score=86.24  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|+++|..|..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|+..+
T Consensus       256 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL-~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          256 QNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH-HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            468999999999999999999999999999998 899999999999999999999999999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.69  E-value=6.5e-17  Score=82.04  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             ccccCcccCCCC-------------CCcHHHHHHHcCCHHHHHHHHHh---cCCCccccCCCCCcHHHHHHH--cCCHH-
Q psy14142          2 TYEMSANSQMDN-------------DVTPVYLAAQEGHLEVLKFLVLE---AGGSLYVRAKDGMAPIHAAAQ--MGCLS-   62 (76)
Q Consensus         2 ~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~g~tpl~~a~~--~~~~~-   62 (76)
                      .+|++++..+..             |.||||+|+..++.+++++|+ .   .|++++.++..|.||||+|+.  .++.+ 
T Consensus       111 ~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~  189 (256)
T 2etb_A          111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-ENPHQPASLEATDSLGNTVLHALVMIADNSPEN  189 (256)
T ss_dssp             HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH-HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred             HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH-hccccCCCcCccCCCCCCHHHHHHHcccCCchh
Confidence            357788887775             999999999999999999998 7   899999999999999999998  77888 


Q ss_pred             ------HHHHHHhCC
Q psy14142         63 ------CLKWMEHRP   71 (76)
Q Consensus        63 ------~~~~l~~~~   71 (76)
                            ++++|+++|
T Consensus       190 ~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          190 SALVIHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcC
Confidence                  999998865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.69  E-value=3.7e-17  Score=83.02  Aligned_cols=69  Identities=16%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCc-------cccCCCCCcHHHHHHHcCCHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGH---------LEVLKFLVLEAGGSL-------YVRAKDGMAPIHAAAQMGCLSCLKW   66 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~l~~~~~~~~-------~~~~~~g~tpl~~a~~~~~~~~~~~   66 (76)
                      +|++++.++..|.||||+|+..++         .+++++|+ ..|+++       +.++..|.||||+|+..|+.+++++
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL-IKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH-HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH-HhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence            789999999999999999998887         68999998 888887       6789999999999999999999999


Q ss_pred             HHhCCC
Q psy14142         67 MEHRPA   72 (76)
Q Consensus        67 l~~~~~   72 (76)
                      |++++.
T Consensus       244 Ll~~g~  249 (260)
T 3jxi_A          244 IIRREI  249 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHhCC
Confidence            998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.69  E-value=3.4e-16  Score=78.51  Aligned_cols=67  Identities=24%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..|.||||+|+..++.+++++|+ +.|+.++.++..|.||||+|+..++.+++++|++.+
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  100 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG  100 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            4444555555555555555555555555554 455555555555555555555555555555555544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.69  E-value=7.7e-17  Score=81.87  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             ccccCcccCC--------------CCCCcHHHHHHHcCCHHHHHHHHHh---cCCCccccCCCCCcHHHHHHHcCC----
Q psy14142          2 TYEMSANSQM--------------DNDVTPVYLAAQEGHLEVLKFLVLE---AGGSLYVRAKDGMAPIHAAAQMGC----   60 (76)
Q Consensus         2 ~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~g~tpl~~a~~~~~----   60 (76)
                      .+|++++..+              ..|.||||+|+..++.+++++|+ +   .|++++.++..|.||||+|+..++    
T Consensus       114 ~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~  192 (260)
T 3jxi_A          114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-ENGHKQADLRRQDSRGNTVLHALVAIADNTRE  192 (260)
T ss_dssp             HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH-HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHH
T ss_pred             hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH-hccccCCCCcccCCCCCcHHHHHHHhccCchh
Confidence            3577777777              67999999999999999999998 7   899999999999999999998887    


Q ss_pred             -----HHHHHHHHhCC
Q psy14142         61 -----LSCLKWMEHRP   71 (76)
Q Consensus        61 -----~~~~~~l~~~~   71 (76)
                           .+++++|++.|
T Consensus       193 ~~~~~~~~v~~Ll~~g  208 (260)
T 3jxi_A          193 NTKFVTKMYDLLLIKC  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC
Confidence                 68999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.69  E-value=1.7e-16  Score=80.56  Aligned_cols=69  Identities=19%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||+++|+..|+.+++++|....
T Consensus       178 ~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          178 KNGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            468899999999999999999999999999998 999999999999999999999999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.69  E-value=5.4e-17  Score=85.09  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             ccccCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhC
Q psy14142          2 TYEMSANS-QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC---LSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~---~~~~~~l~~~   70 (76)
                      ..|+++|. .+..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..|+   .+++..|++.
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            45789999 8999999999999999999999998 8999999999999999999999988   4555555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.69  E-value=1.3e-16  Score=85.79  Aligned_cols=67  Identities=31%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |++++..+..+.||||+|+..|+.+++++|+ +.++.++.++..|.||||+|+..|+.+++++|++++
T Consensus        37 g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  103 (437)
T 1n11_A           37 GASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN  103 (437)
T ss_dssp             TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence            3444444444444444444444444444444 444444444444455555555555555555444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.68  E-value=3.9e-16  Score=78.05  Aligned_cols=66  Identities=23%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      |++++..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|++.
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3344444444444444444444444444444 44444444444444444444444444444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.68  E-value=1.1e-16  Score=81.89  Aligned_cols=69  Identities=19%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             ccccCcccCCC--------------CCCcHHHHHHHcCCHHHHHHHHHh---cCCCccccCCCCCcHHHHHHHcCC----
Q psy14142          2 TYEMSANSQMD--------------NDVTPVYLAAQEGHLEVLKFLVLE---AGGSLYVRAKDGMAPIHAAAQMGC----   60 (76)
Q Consensus         2 ~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~g~tpl~~a~~~~~----   60 (76)
                      .+|++++..+.              .|.||||+|+..++.+++++|+ +   .|++++.++..|.||||+|+..++    
T Consensus       122 ~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~  200 (273)
T 2pnn_A          122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL-QNSWQPADISARDSVGNTVLHALVEVADNTVD  200 (273)
T ss_dssp             HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH-HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH-hcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence            35777777775              7999999999999999999998 7   899999999999999999999888    


Q ss_pred             -----HHHHHHHHhCC
Q psy14142         61 -----LSCLKWMEHRP   71 (76)
Q Consensus        61 -----~~~~~~l~~~~   71 (76)
                           .+++++|++.+
T Consensus       201 ~~~~~~~~v~~Ll~~g  216 (273)
T 2pnn_A          201 NTKFVTSMYNEILILG  216 (273)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence                 78999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=1.6e-16  Score=84.51  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      ..|+++|..|..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|++.+
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  222 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  222 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHH-HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            468899999999999999999999999999998 899999999999999999999999999999999865

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=1.6e-16  Score=72.41  Aligned_cols=63  Identities=33%  Similarity=0.453  Sum_probs=59.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|..|.|+||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            46788999999999999999999998 8899999999999999999999999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.67  E-value=9e-16  Score=77.09  Aligned_cols=65  Identities=28%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +++..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..++.+++++|++.+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  101 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC  101 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            44445555555555555555555555554 455555555555555555555555555555555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.67  E-value=5.9e-16  Score=81.09  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=59.0

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+++++.+|..|.||||+|+..|+.+++++|+ +.|++++.+     +|||+|+..++.+++++|+++|+
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA  325 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGA  325 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-TTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcC
Confidence            47899999999999999999999999999998 899887653     59999999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.67  E-value=1.7e-17  Score=81.46  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCC------HHHHHHHHHhcCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGH------LEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMG-----CLSCLKWMEH   69 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~------~~~~~~l~~~~~~~~~~~~~~g~-tpl~~a~~~~-----~~~~~~~l~~   69 (76)
                      +|+++|.++..|+||||+|+..++      .+++++|+ ..|++++.++..|. ||||+|+..+     +.+++++|++
T Consensus        64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHH-HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHH-HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            466666666666666666666554      34566665 56666666666666 6666666532     2345566665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.66  E-value=6.1e-16  Score=79.80  Aligned_cols=68  Identities=22%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|++++.++..|.||||+|+..++.+++++|+ +.|++++. +..|.||||+|+..++.+++++|+++|+
T Consensus       179 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          179 YGGNIDHKISHLGTPLYLACENQQRACVKKLL-ESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH-HTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            56777777777888888888888888888877 77777764 6677788888888888888888877754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.66  E-value=9e-16  Score=78.30  Aligned_cols=67  Identities=25%  Similarity=0.346  Sum_probs=35.2

Q ss_pred             ccCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          4 EMSANSQ-MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         4 ~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      |.+++.. +..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|++++
T Consensus        28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLL-RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3444444 344555555555555555555554 455555555555555555555555555555555543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.66  E-value=2e-17  Score=83.33  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHH--HHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAA--AQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a--~~~~~~~~~~~l~~~~   71 (76)
                      .+|++++..+..|.||||+|+..++.+++++|+ +.|++++.++ ..|.||||+|  +..++.+++++|++.|
T Consensus        75 ~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           75 TAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            468899999999999999999999999999998 8999999986 6999999999  8999999999999865

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.66  E-value=1.4e-16  Score=82.17  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=41.2

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++..  +|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|++++
T Consensus        53 ~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  118 (285)
T 3kea_A           53 AGALKNLL--ENEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  118 (285)
T ss_dssp             TTGGGSCC--TTCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCCCCC--CCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            34455444  2566666666666666666665 566666666666666666666666666666666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.66  E-value=1.3e-15  Score=76.41  Aligned_cols=69  Identities=23%  Similarity=0.254  Sum_probs=54.7

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+.+++..+..|.||||+|+..++.+++++|+ +.|+.++.++..|.||||+|+..++.+++++|++.+.
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA  103 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45677777778888888888888888888887 7778877778888888888888888888888877653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.66  E-value=6.4e-17  Score=80.76  Aligned_cols=69  Identities=23%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      |++++.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||+|+|+..++.++++.|+..++.
T Consensus       130 g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL-AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             TCCCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            8899999999999999999999999999998 88999999999999999999999999999998887754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.65  E-value=1.8e-15  Score=77.98  Aligned_cols=63  Identities=29%  Similarity=0.392  Sum_probs=58.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..+..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence            35678999999999999999999998 9999999999999999999999999999999999874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.65  E-value=7.9e-16  Score=76.97  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             cccCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          3 YEMSANSQMD-NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         3 ~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+++++..+. .|.||||+|+..++.+++++|+ +.|++++.++..|.||+++|+..++.+++++|++.++.
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            5677887876 8899999999999999999998 88999999999999999999999999999999987653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.64  E-value=5.6e-16  Score=78.24  Aligned_cols=69  Identities=12%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|++++. +..+.|+||+|+..|+.++++.|+ ..+++++.++..|.||||+|+..|+.+++++|+++++
T Consensus        26 ~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga   94 (239)
T 1ycs_B           26 AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV   94 (239)
T ss_dssp             ------------CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             ccCCCccc-CchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45677764 356899999999999999999998 8999999999999999999999999999999999763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.63  E-value=7e-17  Score=79.30  Aligned_cols=68  Identities=13%  Similarity=0.061  Sum_probs=60.9

Q ss_pred             ccccCcccCCCCCC-cHHHHHHHcCC-----HHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDV-TPVYLAAQEGH-----LEVLKFLVLE-AGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~-t~l~~a~~~~~-----~~~~~~l~~~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+|+++|.+|..|. ||||+|+..+.     .+++++|+ . .|++++.++..|.||||+|+..++.+++++|..+
T Consensus       102 ~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll-~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF-SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH-TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH-HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            47899999999999 99999998543     45889998 7 9999999999999999999999999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.63  E-value=2.9e-15  Score=68.98  Aligned_cols=61  Identities=25%  Similarity=0.287  Sum_probs=55.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         11 MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        11 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +..+.++||+|+..++.++++.++ ..+.+++.++..|.||||+|+..++.+++++|++.++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   64 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA   64 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            456889999999999999999998 8999999999999999999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.61  E-value=2.1e-15  Score=76.47  Aligned_cols=68  Identities=21%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH----------------HcCCHHHH
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA----------------QMGCLSCL   64 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~----------------~~~~~~~~   64 (76)
                      .+|++++..+ ..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+                ..|+.+++
T Consensus        98 ~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A           98 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             HTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHH
Confidence            4688999888 78999999999999999999998 889999999999999998887                56788888


Q ss_pred             HHHHhC
Q psy14142         65 KWMEHR   70 (76)
Q Consensus        65 ~~l~~~   70 (76)
                      ++|++.
T Consensus       177 ~~L~~~  182 (244)
T 3ui2_A          177 NVLEGQ  182 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.61  E-value=2e-15  Score=73.64  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             ccccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q psy14142          2 TYEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM   58 (76)
Q Consensus         2 ~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~   58 (76)
                      .+|++++..+ ..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..
T Consensus        97 ~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A           97 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHH-HcCCCCcCCCCCCCCHHHHHHHh
Confidence            4688998888 88999999999999999999998 88999999999999999998765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.58  E-value=7e-15  Score=77.13  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=57.3

Q ss_pred             cCcccCCCCCCcHHHHHHH----cCCHHHHHHHHHhcCC-----------------------------------------
Q psy14142          5 MSANSQMDNDVTPVYLAAQ----EGHLEVLKFLVLEAGG-----------------------------------------   39 (76)
Q Consensus         5 ~~~~~~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~~-----------------------------------------   39 (76)
                      .+++.++..|.||||+|+.    .++.+++++++ +.+.                                         
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll-~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~  270 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL-DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  270 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHH-HHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHH-HHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHH
Confidence            5678888899999999998    88999999887 4421                                         


Q ss_pred             ----CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         40 ----SLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        40 ----~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                          .++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       271 Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                467788899999999999999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=72.14  Aligned_cols=68  Identities=18%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .|++++..+..|.||||+|+..++.+++++|+ ..+....... ..|.||||+|+..++.+++++|++.+
T Consensus        31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g   99 (240)
T 3eu9_A           31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG   99 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH-HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence            35556666666666666666666666666665 5555444333 33566666666666666666666554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.41  E-value=6.3e-15  Score=78.85  Aligned_cols=57  Identities=28%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142         13 NDVTPVYLAAQEGHLEVLKFLVLEAGGS---LYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus        13 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+.+|||+|+..|+.+++++|+ ..|++   .+..+.. .||||+|+..|+.+++++|++++
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll-~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~g  186 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELA  186 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-hCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcC
Confidence            3445555555555555555555 44532   1111122 55555555555555555555554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.34  E-value=3.4e-13  Score=72.22  Aligned_cols=56  Identities=25%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCC
Q psy14142         15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYV--RAKDGMAPIHAAA-QMGCLSCLKWMEHRP   71 (76)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~--~~~~g~tpl~~a~-~~~~~~~~~~l~~~~   71 (76)
                      .||||+|+..|+.+++++|+ ..|++++.  .+..|.||||+|+ ..|+.+++++|++.+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll-~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLC-ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             CCHHHHHHHCCCHHHHHHHH-HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            66777777777777777666 66666555  5556667777777 777777777766643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-09
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + ++   N++     +P++ AAQ+GH +++  L L+ G S    + DG  P+  A ++G 
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGY 375

Query: 61  LSCLKWME 68
           +S    ++
Sbjct: 376 ISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-09
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 8  NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          N       TP+++AA+ GH EV K+L L+    +  +AKD   P+H AA++G  + +K +
Sbjct: 27 NVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

Query: 68 EHRPA 72
              A
Sbjct: 86 LENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-09
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
          TP+++A+  GHL ++K L L+ G S  V       P+H AA+ G     K++
Sbjct: 2  TPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 52

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           +  E S         TP+++AA+ G + V + L LE         K+G+ P+H A     
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELL-LERDAHPNAAGKNGLTPLHVAVHHNN 177

Query: 61  LSCLKWMEHRPA 72
           L  +K +  R  
Sbjct: 178 LDIVKLLLPRGG 189

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 7   ANSQMDNDVTPVYLAAQEGHLEVLKFL--VLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
           A+ +        ++AA  G    L  L  +L +   + V   +       AA+ G L  L
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 65  KWMEHRPA 72
             +     
Sbjct: 143 NRLCELAP 150

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
                 +     LAA+ GHL VL  L  E   +  +             AA+ G L  L 
Sbjct: 120 KVIQAENYQAFRLAAENGHLHVLNRL-CELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 66  WMEHRPAVK 74
            +      +
Sbjct: 179 RLCELAPTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 6   SANSQMDNDVTPVYLAAQEGHLEVLKFLV----LEAGGSLYVRAKDGMAPIHAAAQMGCL 61
           S   Q    +  +     E  L+ ++FL+    ++A         D    +  A ++G  
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 62  SCLKWMEHRPAV 73
                +   P+V
Sbjct: 331 GACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 6/67 (8%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
            +++        L+  +G  +++         S  ++    +  +        L  ++++
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 68  EHRPAVK 74
              P +K
Sbjct: 299 LSIPGIK 305

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 8e-08
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
           N+Q  N  T + +AA+ G++ ++  L L+ G   ++  K G+ P+   A
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDAL-LDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 8   NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
           N  +D    TP++      +LE++K L ++ G +       G + +  A +         
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHL-VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 67  MEH 69
            E 
Sbjct: 159 FEA 161

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (77), Expect = 6e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
            S  +   +       E    +L+ L L+   +  + A+D  G   ++ AA++G +S + 
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 66  W 66
            
Sbjct: 277 A 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 10  QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           Q ++  TP+ LAAQEG +EV+ +L ++ G S+             A      + + 
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYL-IQQGASVEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.6 bits (75), Expect = 0.001
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 8/74 (10%)

Query: 4  EMSANSQMDND-VTPVYLAAQEGHLEVLKFLV-------LEAGGSLYVRAKDGMAPIHAA 55
            S N        T ++  A     E  + L+       + AG  +     D   P+  A
Sbjct: 22 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 81

Query: 56 AQMGCLSCLKWMEH 69
                  + ++  
Sbjct: 82 VLARRRRLVAYLMK 95

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.2 bits (74), Expect = 0.001
 Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 16 TPVYLAAQ-EGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVK 74
          +P+ L  +  G   + + +  E      +  +     +H  A        + +    A +
Sbjct: 2  SPIKLHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 75 L 75
           
Sbjct: 60 C 60

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-07
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR 70
           P++ A  E     ++ L+      L  + +DG  P+H +          ++  +
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (72), Expect = 0.002
 Identities = 13/64 (20%), Positives = 20/64 (31%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
              + + N Q     TP++ A  EGH +    LV + G    +    G      A     
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 218

Query: 61  LSCL 64
               
Sbjct: 219 KKFF 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-07
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
           N + +   TP+ LA ++ HL +++ L+ +    +     DG   +  A ++      +
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-06
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSL-YVRAKDGMAPIHAAAQMGCLSCLKWMEH 69
           D   +  A Q   +++++ L LE G ++ +   + G  P+H A QM     ++ +  
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQL-LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
            +           T +  AA++GH+EVLK L+ E G  +      G   +  A      S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 63  CLKWMEH 69
            ++ + H
Sbjct: 197 DVEAITH 203

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 6e-07
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
           +      N +  +  TP++ AA  G  E  + L +E    +    K G      A +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL-VENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP 71
          +D      A   G  E +  L LE G  +     DG+  +H A     +  +K++    
Sbjct: 39 DDGAVFLAACSSGDTEEVLRL-LERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLKWMEH 69
          ++  T ++LA    H   L FL+  + G  Y+  ++  G   +H AA +G  S ++ +  
Sbjct: 7  EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 3   YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
                  +     TP++LA +     VL+ L L+AG     R   G  P+ +A       
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELL-LKAGADPTARMYGGRTPLGSALLRPNPI 239

Query: 63  CLKW 66
             + 
Sbjct: 240 LARL 243

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-06
 Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + +  + N+QM +  + ++ A+  G L +++ L + +G    ++      P+  A     
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-VRSGADSSLKNCHNDTPLMVARSRRV 222

Query: 61  LSCLK 65
           +  L+
Sbjct: 223 IDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 12 DNDVTPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
          ++  TP+++A  +G+L  +  LV    + G  L +       P+H A      S ++ + 
Sbjct: 1  EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 69 H 69
           
Sbjct: 61 T 61

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 9e-06
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 18 VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH 69
          V   A  G LE LK  +L          +D    +H A   G    ++++  
Sbjct: 7  VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 6e-04
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 8   NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
           N+   N  TP++ AA +   E+   L LE G +   +       +H AA  G L  +  +
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVML-LEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 68  EH 69
            +
Sbjct: 156 LY 157

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.001
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + Y+ S N Q     TP++LA  E  +E  K L +  G S+Y+  K+   P+  A   G 
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLL-VSQGASIYIENKEEKTPLQVAKG-GL 213

Query: 61  LSCLKWM 67
              LK M
Sbjct: 214 GLILKRM 220

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 1   MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
           + +  + ++Q D D TP++LAA+EG  E  K L L+   +  +       P   A++   
Sbjct: 143 LMHHANRDAQDDKDETPLFLAAREGSYEASKAL-LDNFANREITDHMDRLPRDVASERLH 201

Query: 61  LSCLKWME 68
              ++ ++
Sbjct: 202 HDIVRLLD 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 5e-04
 Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 16 TPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH 69
          + ++LA       +   ++         L  +      P+H A         + +  
Sbjct: 4  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.81
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.76
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.74
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.72
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.69
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.68
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.68
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.67
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.67
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.66
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.63
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.62
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.61
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.61
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.61
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.6
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.59
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.59
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.57
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.54
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.52
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.47
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.36
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.34

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-22  Score=92.26  Aligned_cols=71  Identities=27%  Similarity=0.372  Sum_probs=67.2

Q ss_pred             CccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         1 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.+|+++|.++..|+||||+|+..++.+++++++ ..+++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        21 l~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   91 (130)
T d1ycsb1          21 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA   91 (130)
T ss_dssp             TSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCCcccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999998 8899999999999999999999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.7e-21  Score=92.29  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+|+++|.++..|.||||+|+..++.+++++|+ ..|++++.++..|.||||+|+..|+.+++++|++.++.
T Consensus        69 ~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          69 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HcCCChhhhhhhhcccccccccccccccccccc-ccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            368899999999999999999999999999998 89999999999999999999999999999999886543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.6e-21  Score=88.84  Aligned_cols=70  Identities=27%  Similarity=0.464  Sum_probs=66.5

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.|++++.++..|.||+|+|+..++.+++++++ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        23 ~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Ga   92 (118)
T d1myoa_          23 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA   92 (118)
T ss_dssp             TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCC
T ss_pred             Hhhhccccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCchhhhhhhhcccc
Confidence            568999999999999999999999999999998 9999999999999999999999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.3e-20  Score=92.41  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      ++|++++.++..|.||||+++..++.++++++++..+.+++.++..|.||||+|+..++.+++++|+++|+-
T Consensus       207 ~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            468899999999999999999999999999998557899999999999999999999999999999999863

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-19  Score=82.41  Aligned_cols=67  Identities=28%  Similarity=0.371  Sum_probs=60.4

Q ss_pred             ccccCcccCCCCCC-cHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          2 TYEMSANSQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         2 ~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      .+|++++.++..+. +|||+|+..|+.+++++|+ +.|++++.++..|.||+|+|+..|+.+++++|++
T Consensus        56 ~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          56 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            46788888888765 6999999999999999998 8899999999999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=9.2e-19  Score=82.05  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM   67 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   67 (76)
                      .++++.+.++..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|
T Consensus        88 ~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll-~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCccccccccCchHHHhhhhcchhheeeecc-ccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            357788889999999999999999999999998 89999999999999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1.1e-18  Score=85.10  Aligned_cols=64  Identities=23%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM   67 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   67 (76)
                      ++.+++..|..|.||||+|+..|+.++++.|+ +.|++++.++..|.||||+|++.|+.+++++|
T Consensus       145 ~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         145 HHANRDAQDDKDETPLFLAAREGSYEASKALL-DNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccchhccccHHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            46778888999999999999999999999998 89999999999999999999999999999876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=90.64  Aligned_cols=67  Identities=24%  Similarity=0.423  Sum_probs=62.2

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      ..|+++|.++..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|..
T Consensus       318 ~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll-~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            357899999999999999999999999999999 8999999999999999999999999999987643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=80.75  Aligned_cols=67  Identities=28%  Similarity=0.406  Sum_probs=60.7

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .++++++.++..+.+|||+|+..++.+++++|+  .+++++.++..|.||||+|+..|+.+++++|+++
T Consensus        89 ~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~--~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH--TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccCCCCeeecccccccccccccccc--ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            357888999999999999999999999999775  5788899999999999999999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=1.3e-17  Score=83.76  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=62.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+.+.+.++..|.||||+|+..++.+++++|+ +.|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus       210 ~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll-~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            45677888999999999999999999999998 89999999999999999999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.1e-17  Score=78.05  Aligned_cols=61  Identities=26%  Similarity=0.413  Sum_probs=55.7

Q ss_pred             CCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         11 MDNDVTPVYLAAQE---GHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        11 ~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +..|.||||+|+..   +..+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga  105 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA  105 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhccccccccccccccccccccccCc
Confidence            56789999999974   5788999998 8999999999999999999999999999999999864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.74  E-value=3.4e-19  Score=92.87  Aligned_cols=70  Identities=23%  Similarity=0.247  Sum_probs=61.3

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA--KDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+|+++|.++..|+||||+|+..|+.+++++|+ +.|++++..+  ..|.||||+|+..|+.+++++|++.++
T Consensus       114 ~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll-~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             -CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCC
Confidence            568899999999999999999999999999998 8898888765  458999999999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.9e-17  Score=81.90  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             ccCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          4 EMSANS-QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         4 ~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      +++.+. .+..|.||||+|+..++.+++++|+ +.|++++.++..|.||||+|+..++.+++++|+++|+.
T Consensus       181 ~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll-~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccccHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            344443 3567889999999999999999888 78888998898899999999999999999999998874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=78.17  Aligned_cols=62  Identities=23%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH---hcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         12 DNDVTPVYLAAQEGHLEVLKFLVL---EAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        12 ~~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      .+|.||||+|+..|+.++++.|+.   ..|++++.++..|.||||+|+..|+.+++++|+++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~   65 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS   65 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc
Confidence            369999999999999999887762   47889999999999999999999999999999998753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1e-16  Score=79.94  Aligned_cols=63  Identities=24%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS---LYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         9 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ..+.+|.||||+|+..++.+++++|+ ..+++   ++.++..|.||||+|+..|+.+++++|++.|+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll-~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLL-GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHH-HHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccCcCCCCCCccchHHhhcccccccccccccc
Confidence            45667788888888888888888777 55554   44566677788888888888888888777763

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7e-17  Score=84.56  Aligned_cols=69  Identities=30%  Similarity=0.441  Sum_probs=62.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|+++|..|..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..|+.+++++|+...
T Consensus        21 ~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~   89 (408)
T d1n11a_          21 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN   89 (408)
T ss_dssp             HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Confidence            468899999999999999999999999999998 889999999999999999999999999999887654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.5e-16  Score=73.81  Aligned_cols=70  Identities=26%  Similarity=0.369  Sum_probs=61.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .++.+++..+..+.+++++|+..+..++++.+++..+.+.+.++..|.||||+|+..++.+++++|+++|
T Consensus        87 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          87 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            3567788888999999999999999999999984444478889999999999999999999999999886

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.68  E-value=1.2e-16  Score=80.26  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=63.0

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      +.|+++|.+|..|.||||+|+..|+.+++++|+ +.|++++.++..|.||++++...++.+++.++...
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll-~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             HcCCCccccCCCCCeeecccccccccccccccc-ccccccccccccccccccchhhhcchhhhhhhhhc
Confidence            468999999999999999999999999999998 89999999999999999999999999988877654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=77.44  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=40.9

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +|++++..+..+.+|+|+++..+...+.+++. ..+.+++.++..|.||||+|+..|+.+++++|+++|
T Consensus       125 ~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~-~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCcCCCCCccchhhhhcCCcchhhhhc-cccceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            34455555555555555555555555555554 555556666666677777777777777777776665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.9e-17  Score=79.68  Aligned_cols=66  Identities=35%  Similarity=0.451  Sum_probs=60.6

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEH   69 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   69 (76)
                      .++.+++.++..|+||||+|+..++.+++++|+ +.|++++.+|..|.||||+|. .|+.+++++|++
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL-~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            357889999999999999999999999999998 899999999999999999984 688899999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-17  Score=74.82  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=61.2

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHhCC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~-tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      .+|+++|..+..|.+++|+|+ .++.+++++|+ ..|++++.++..+. +|||+|+..|+.+++++|+++|
T Consensus        24 ~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g   92 (125)
T d1bi7b_          24 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG   92 (125)
T ss_dssp             TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HcCCccccccccccccccccc-ccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999998765 78999999998 89999999887765 6999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=2.7e-15  Score=75.89  Aligned_cols=66  Identities=27%  Similarity=0.366  Sum_probs=58.6

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         6 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +....+..+.||+++++..++.++++.|+ ..|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll-~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga  256 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccc-cceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            34455677899999999999999999998 8999999999999999999999999999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.8e-15  Score=74.38  Aligned_cols=67  Identities=19%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG-GSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      .+.+.+.++..|.||+|+++..++.++++.|+ ..+ ..++.++..|.||||+|+..++.+++++|+++
T Consensus       127 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  194 (229)
T d1ixva_         127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLC-GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK  194 (229)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcccccccCCCCCCccchhhhccccccccccc-ccccccccccccccCCchhhhcccccHHHHHHHHHh
Confidence            45566777788888999888888888888887 444 56778888888999999888888888888864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=75.19  Aligned_cols=69  Identities=26%  Similarity=0.312  Sum_probs=63.5

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .++++|.++..|.||||+|+..++.+++++|+ ..|++++.++..|.+|++.+...++.++++.|+..+.
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~   96 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT   96 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             CCCCcccCCCCCCccccccccccccccccccc-cccccccccccccccccccccccccccccchhhhhcc
Confidence            57789999999999999999999999999998 8999999999999999999999999999999987653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8.8e-16  Score=69.57  Aligned_cols=57  Identities=26%  Similarity=0.356  Sum_probs=53.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .|||++|+..|+.++++.|+ +.|++++.++..|.||+|+|+..++.+++++|++.++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~   59 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA   59 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC
T ss_pred             ChHHHHHHHCCCHHHHHHHH-Hhhhccccccccccccccccccccccccccccccccc
Confidence            47999999999999999998 8999999999999999999999999999999998864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.9e-15  Score=74.32  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        16 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +|||+|+..|+.++++.|+...+..++.++..|.||||+|+..|+.+++++|+++++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga   58 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME   58 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhc
Confidence            577777777777777666644555666677777777777777777777777776653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=1.1e-14  Score=70.73  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++++++..+..|.|++++++..+...+++.++ ..+..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus       112 ~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~-~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         112 ADADINAADNSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hcccccccCCCCCCcchhhcccCcceeeeeec-cccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence            56778888999999999999999999999997 8899999999999999999999999999999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=75.10  Aligned_cols=69  Identities=14%  Similarity=0.144  Sum_probs=59.3

Q ss_pred             cccCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          3 YEMSANSQM-DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         3 ~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      .+..++..+ ..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||+|+..++.+++++|++...
T Consensus       133 ~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll-~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         133 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-TTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             cCcccccccccCCCCccccccccccHHHHHHHH-hcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            355565554 56899999999999999999998 8999999999999999999999999999999988653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=5.7e-15  Score=74.67  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRP   71 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   71 (76)
                      +.|+|+.||..|+.++++.|+ +.|++++.++..|.||||+|+..|+.+++++|++++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~   96 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG   96 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccc
Confidence            345666666666666666665 566666666666666666666666666666666554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.9e-17  Score=78.04  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             ccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHH
Q psy14142          4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL   64 (76)
Q Consensus         4 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~   64 (76)
                      +.+.+.++..|.+|||+|+..|+.+++++|+ +.|++++.++..|.||||+|++.|+.+++
T Consensus       167 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         167 GANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             ccccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            3344444455555555555555555555554 44555555555555555555554444443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=6.6e-15  Score=75.29  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             ccCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q psy14142          4 EMSANSQ-MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC   60 (76)
Q Consensus         4 ~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~   60 (76)
                      +.++|.. |..|.||||+|+..|+.+++++|+ +.|++++.++..|.||||.|+..++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhccc
Confidence            4567755 888999999999999999999998 8999999999999999999998664

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.2e-15  Score=67.96  Aligned_cols=56  Identities=13%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142         16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        16 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      +.|+.|+..|+.++++.|+ +.|++++.++..|.||||+|+..++.+++++|++.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll-~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~   58 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV   58 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HcCCCcccccccccccccccccccccccccccccccc
Confidence            5688999999999999998 8999999999999999999999999999999998763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-14  Score=67.18  Aligned_cols=70  Identities=33%  Similarity=0.450  Sum_probs=55.9

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      ++.+++..+..+.+|++.++..++.++.+.++ ..+.+++.++..|.||||+|+..|+.+++++|++..++
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~  126 (156)
T d1bd8a_          57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL  126 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCT
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccCCCCeeeccccccccccccccccccccc
Confidence            45667777777788888888888888888877 77888888888899999999999999999888764433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.6e-14  Score=66.31  Aligned_cols=67  Identities=24%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             ccccCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy14142          2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHR   70 (76)
Q Consensus         2 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   70 (76)
                      ..|++++.+|..|.||||+|+ .++.+++++|+ ..+++++..+..+.+|++.+...++.+.+.+|++.
T Consensus        22 ~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~   88 (156)
T d1ihba_          22 QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF   88 (156)
T ss_dssp             TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HCCCCcCccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccccccccccc
Confidence            456777777777777777664 56777777776 66666555555555555555555555555555443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.52  E-value=7.1e-16  Score=80.30  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=54.5

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHH---HHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKF---LVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~---l~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      ++.++..|.|+|++|+..|+.+++++   |+ ..|+.++.++..|.||||+|+..|+.+++++|++.|+
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~-~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHH-hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            44566788999999999999887765   55 8899999999999999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.4e-14  Score=74.12  Aligned_cols=49  Identities=27%  Similarity=0.464  Sum_probs=46.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14142          7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA   56 (76)
Q Consensus         7 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~g~tpl~~a~   56 (76)
                      +|.+|..|.||||+|++.|+.+++++|+ +.|++++.++..|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll-~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHcC
Confidence            6888999999999999999999999999 899999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-12  Score=64.40  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCc
Q psy14142         14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-KDGMAPIHAAAQMGCLSCLKWMEHRPAV   73 (76)
Q Consensus        14 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~   73 (76)
                      +.++|++|++.++.+++++|+ +.|++++.++ ..|.||||+|+..|+.+++++|++.+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll-~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~   64 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD   64 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc
Confidence            467899999999999999998 8899988765 5699999999999999999999887653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.5e-11  Score=57.02  Aligned_cols=69  Identities=19%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             cccCcccCCCCCCcHHHHHHHcCCHHHHHHHHH--------------------------------hcCCCccccCCCCCc
Q psy14142          3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVL--------------------------------EAGGSLYVRAKDGMA   50 (76)
Q Consensus         3 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------------------------------~~~~~~~~~~~~g~t   50 (76)
                      +|++++ .+..|.||||+|+..++.++++.+..                                ..+...+.++..|.|
T Consensus        24 ~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T  102 (153)
T d1awcb_          24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT  102 (153)
T ss_dssp             HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCch
Confidence            466665 57778888888888887776655541                                235567778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCC
Q psy14142         51 PIHAAAQMGCLSCLKWMEHRPA   72 (76)
Q Consensus        51 pl~~a~~~~~~~~~~~l~~~~~   72 (76)
                      |||+|+..|+.+++++|++.|+
T Consensus       103 ~L~~A~~~g~~~iv~~ll~~ga  124 (153)
T d1awcb_         103 ALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHhhhhcchhheeeecccccc
Confidence            9999999999999999999875