Psyllid ID: psy14146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MSLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslyennlTWIMAndtvesssnqfeqpwwkqvmwtsLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMlssdwpfgrfyckVTQFVAVLSICASVFTLMAIsvdstyqy
Flexible Loop (DISEMBL)
MSLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAIsvdstyqy
Low Complexity Region (SEG)
MSLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Disordered region (IsUnstruct)
*****NNLTWIMANDTV****NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD*****
Disordered Region (DISOPRED)
*****NNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Disordered Region (DISEMBL)
MSLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Disordered Region (DISPRO)
**********************QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
P30975	519	Tachykinin-like peptides	yes	N/A	0.849	0.217	0.716	9e-45
P30974	504	Tachykinin-like peptides	no	N/A	0.827	0.218	0.527	3e-30
P16177	452	Neuromedin-K receptor OS=	yes	N/A	0.812	0.238	0.527	4e-28
P47937	452	Neuromedin-K receptor OS=	yes	N/A	0.812	0.238	0.518	1e-27
O97512	467	Neuromedin-K receptor OS=	yes	N/A	0.812	0.231	0.518	4e-26
P29371	465	Neuromedin-K receptor OS=	yes	N/A	0.812	0.232	0.518	5e-26
Q98982	408	Substance-P receptor OS=L	N/A	N/A	0.864	0.281	0.435	5e-25
P79218	384	Substance-K receptor OS=O	no	N/A	0.857	0.296	0.429	5e-23
Q5DUB1	407	Substance-P receptor OS=M	N/A	N/A	0.849	0.277	0.469	7e-23
P05363	384	Substance-K receptor OS=B	no	N/A	0.857	0.296	0.429	7e-23

>sp|P30975|TLR2_DROME Tachykinin-like peptides receptor 99D OS=Drosophila melanogaster GN=Takr99D PE=2 SV=2

 Score =  178 bits (451), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 100/113 (88%)

Query: 16  TVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL 75
           ++E+ S  F  PWW+QV+W+ L+  MV+VATGGNLIV+WIV+  KRMRTVTNYF+VNLS+
Sbjct: 86  SMETGSFAFVVPWWRQVLWSILFGGMVIVATGGNLIVVWIVMTTKRMRTVTNYFIVNLSI 145

Query: 76  ADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFTLMAIS+D
Sbjct: 146 ADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFTLMAISID 198

Probable receptor for tachykinin-like peptides.
Drosophila melanogaster (taxid: 7227)

>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 81/110 (73%)

Query: 19  SSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADA 78
           S +  +E PW ++ +W  ++  M+ VA  GN IV+WIV  H+ MRTVTNYFL+NLS+AD 
Sbjct: 71  SPTRPYELPWEQKTIWAIIFGLMMFVAIAGNGIVLWIVTGHRSMRTVTNYFLLNLSIADL 130

Query: 79  MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           ++S+LN  FNF++ML+SDWPFG  YC +  FVA +++  SVFTL+AIS D
Sbjct: 131 LMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFTLVAISFD 180

May play a role in neurogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P16177|NK3R_RAT Neuromedin-K receptor OS=Rattus norvegicus GN=Tacr3 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query: 21  SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
           +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA V
Sbjct: 62  TNQFVQPSWRIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASV 121

Query: 81  STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct: 122 AAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 169

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Rattus norvegicus (taxid: 10116)

>sp|P47937|NK3R_MOUSE Neuromedin-K receptor OS=Mus musculus GN=Tacr3 PE=2 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 21  SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
           +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA V
Sbjct: 62  TNQFVQPSWRIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASV 121

Query: 81  STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +  N   NF+Y + S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct: 122 AAFNTLVNFIYGVHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 169

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|O97512|NK3R_RABIT Neuromedin-K receptor OS=Oryctolagus cuniculus GN=TACR3 PE=2 SV=2

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 21  SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
           +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct: 77  TNQFVQPSWRIALWSLAYGVVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 136

Query: 81  STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct: 137 AAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 184

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P29371|NK3R_HUMAN Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 21  SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
           +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct: 75  TNQFVQPSWRIALWSLAYGVVVAVAVLGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 134

Query: 81  STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct: 135 AAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 182

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Homo sapiens (taxid: 9606)

>sp|Q98982|NK1R_LITCT Substance-P receptor OS=Lithobates catesbeiana GN=TACR1 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 14  NDTVESSS--NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLV 71
           N T+++ +  NQF QP W+  +W+  Y+ +V+V+  GN+IV+WI++AHKRMRTVTNYFLV
Sbjct: 14  NSTIQNGTKINQFIQPPWQIALWSVAYSIIVIVSLVGNIIVMWIIIAHKRMRTVTNYFLV 73

Query: 72  NLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           NL+ A+A +S  N   NF Y + + W +G  YCK   F  + ++  S++++ AI++D
Sbjct: 74  NLAFAEASMSAFNTVINFTYAIHNHWYYGLIYCKFHNFFPISAVFTSIYSMTAIALD 130

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Lithobates catesbeiana (taxid: 8400)

>sp|P79218|NK2R_RABIT Substance-K receptor OS=Oryctolagus cuniculus GN=TACR2 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 72/114 (63%)

Query: 15  DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
           D+  +    F  P W+  +W + Y  +V+VA  GN  VIWI+LAH+RMRTVTNYF+VNL+
Sbjct: 17  DSNATGVTAFSMPGWQLALWATAYLALVLVAVVGNATVIWIILAHRRMRTVTNYFIVNLA 76

Query: 75  LADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           LAD  ++T N  FNFVY   + W FGR +C       + ++  S++++ AI+ D
Sbjct: 77  LADLCMATFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAAD 130

This is a receptor for the tachykinin neuropeptide substance K (neurokinin A). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5DUB1|NK1R_MERUN Substance-P receptor OS=Meriones unguiculatus GN=TACR1 PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 79/113 (69%)

Query: 16  TVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL 75
           T  S SNQF QP W+ V+W + Y  +VV +  GN++V+WI+LAHKRMRTVTNYFLVNL+ 
Sbjct: 17  TNSSESNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76

Query: 76  ADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS++++ A++ D
Sbjct: 77  AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFD 129

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Meriones unguiculatus (taxid: 10047)

>sp|P05363|NK2R_BOVIN Substance-K receptor OS=Bos taurus GN=TACR2 PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 72/114 (63%)

Query: 15  DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
           D+  +    F  P W+  +WT+ Y  +V+VA  GN  VIWI+LAH+RMRTVTNYF+VNL+
Sbjct: 17  DSNATGITAFSMPGWQLALWTAAYLALVLVAVMGNATVIWIILAHQRMRTVTNYFIVNLA 76

Query: 75  LADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           LAD  ++  N  FNFVY   + W FGR +C       + ++  S++++ AI+ D
Sbjct: 77  LADLCMAAFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAAD 130

This is a receptor for the tachykinin neuropeptide substance K (neurokinin A). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance K > neuromedin-K > substance P.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
380016363	419	PREDICTED: tachykinin-like peptides rece	0.804	0.255	0.803	2e-45
345482635	480	PREDICTED: tachykinin-like peptides rece	0.864	0.239	0.739	2e-45
328783693	421	PREDICTED: tachykinin-like peptides rece	0.917	0.289	0.692	3e-45
350404139	421	PREDICTED: tachykinin-like peptides rece	0.804	0.254	0.813	4e-45
340725225	377	PREDICTED: tachykinin-like peptides rece	0.804	0.283	0.813	5e-45
322799663	151	hypothetical protein SINV_00085 [Solenop	0.954	0.841	0.697	6e-45
383857325	419	PREDICTED: tachykinin-like peptides rece	0.804	0.255	0.794	7e-45
270001272	428	hypothetical protein TcasGA2_TC011198 [T	0.909	0.282	0.704	1e-44
91091524	381	PREDICTED: similar to tachykinin recepto	0.909	0.317	0.704	1e-44
332024897	149	Tachykinin-like peptide receptor 99D [Ac	0.864	0.771	0.747	1e-44

>gi|380016363|ref|XP_003692156.1| PREDICTED: tachykinin-like peptides receptor 99D-like [Apis florea]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 100/107 (93%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
           NQF  PWW+Q++WT L+A M++VATGGNLIVIWIVLAHKRMRTVTNYFLVNLS+ADAMVS
Sbjct: 38  NQFILPWWRQMIWTLLFAGMIIVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSIADAMVS 97

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           TLNVTFN+VYML+S WPFG  YCK++QF+AVL+ICASVFTLMAIS+D
Sbjct: 98  TLNVTFNYVYMLNSHWPFGTLYCKISQFIAVLTICASVFTLMAISID 144

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482635|ref|XP_001607956.2| PREDICTED: tachykinin-like peptides receptor 99D-like [Nasonia vitripennis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 103/115 (89%)

Query: 14  NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
           +D+   +SN+F  PWW+Q++WT L+A M+VVATGGNLIVIWIVLAHKRMRTVTNYFLVNL
Sbjct: 58  DDSDAQNSNKFILPWWRQIIWTVLFAGMIVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 117

Query: 74  SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           S+ADAMVSTLNV FN+ YML+S WPFG  YCK++QF+AV++ICASVFTLMAIS+D
Sbjct: 118 SIADAMVSTLNVIFNYTYMLNSHWPFGNLYCKISQFIAVITICASVFTLMAISID 172

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783693|ref|XP_395081.3| PREDICTED: tachykinin-like peptides receptor 99D-like isoform 1 [Apis mellifera]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 109/130 (83%), Gaps = 8/130 (6%)

Query: 7   NLTWIMANDTVESSSN--------QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLA 58
           N++ +M N T  +++N        QF  PWW+Q++WT L+A M++VATGGNLIVIWIV+A
Sbjct: 17  NISLLMENYTYHNNTNITDLQLRNQFILPWWRQMIWTLLFAGMIIVATGGNLIVIWIVMA 76

Query: 59  HKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICAS 118
           HKRMRTVTNYFLVNLS+ADAMVSTLNVTFN+VYML+S WPFG  YCK+ QFVAVL+ICAS
Sbjct: 77  HKRMRTVTNYFLVNLSIADAMVSTLNVTFNYVYMLNSHWPFGTLYCKICQFVAVLTICAS 136

Query: 119 VFTLMAISVD 128
           VFTLMAIS+D
Sbjct: 137 VFTLMAISID 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404139|ref|XP_003487015.1| PREDICTED: tachykinin-like peptides receptor 99D-like [Bombus impatiens]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 99/107 (92%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
           NQF  PWW+Q++WT L+A M+VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS+ADAMVS
Sbjct: 39  NQFILPWWRQMIWTLLFACMIVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSIADAMVS 98

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           TLNVTFN++YML+S WPFG  YCK+ QFVAVL+ICASVFTLMAIS+D
Sbjct: 99  TLNVTFNYIYMLNSHWPFGTLYCKICQFVAVLTICASVFTLMAISID 145

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725225|ref|XP_003400973.1| PREDICTED: tachykinin-like peptides receptor 99D-like [Bombus terrestris]

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 99/107 (92%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
           NQF  PWW+Q++WT L+A M+VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS+ADAMVS
Sbjct: 39  NQFILPWWRQMIWTLLFACMIVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSIADAMVS 98

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           TLNVTFN++YML+S WPFG  YCK+ QFVAVL+ICASVFTLMAIS+D
Sbjct: 99  TLNVTFNYIYMLNSHWPFGTLYCKICQFVAVLTICASVFTLMAISID 145

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799663|gb|EFZ20918.1| hypothetical protein SINV_00085 [Solenopsis invicta]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/129 (69%), Positives = 107/129 (82%), Gaps = 2/129 (1%)

Query: 2   SLYENNLTWIM--ANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAH 59
           +L+ +N TW     N T     NQF  PWW+Q++WT L+A M+ VATGGNLIVIWIVLAH
Sbjct: 22  TLWYDNDTWHHNGTNYTDLEPRNQFVLPWWRQMIWTLLFAGMITVATGGNLIVIWIVLAH 81

Query: 60  KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASV 119
           +RMRTVTNYFLVNLS+ADAMVSTLNVTFN+ YML+S WPFG  YCK++QF+AVL+ICASV
Sbjct: 82  RRMRTVTNYFLVNLSIADAMVSTLNVTFNYTYMLNSHWPFGTLYCKISQFIAVLTICASV 141

Query: 120 FTLMAISVD 128
           FTLMAIS+D
Sbjct: 142 FTLMAISID 150

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857325|ref|XP_003704155.1| PREDICTED: tachykinin-like peptides receptor 99D-like [Megachile rotundata]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
           NQF  PWW+Q++WT L+A M++VATGGNLIVIWIVLAHKRMRTVTNYFLVNLS+ADAMVS
Sbjct: 37  NQFILPWWRQMIWTLLFAGMIIVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSIADAMVS 96

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           TLNVTFN++YML+S WPFG  YCK+ QF+AVL+ICASVFTLMAIS+D
Sbjct: 97  TLNVTFNYIYMLNSHWPFGTLYCKICQFIAVLTICASVFTLMAISID 143

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001272|gb|EEZ97719.1| hypothetical protein TcasGA2_TC011198 [Tribolium castaneum]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 106/125 (84%), Gaps = 4/125 (3%)

Query: 4   YENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMR 63
           Y  N+++   NDT E   NQF  P W+QV+W+ LYA MV+VATGGNLIVIWIV +HKRMR
Sbjct: 24  YTTNISY---NDT-EEGGNQFILPVWRQVLWSILYAGMVIVATGGNLIVIWIVFSHKRMR 79

Query: 64  TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLM 123
           TVTNYFL+NLS+AD MVSTLNVTFNFVYML+S WPFG  YCK++QF+AVLS+CASVF+LM
Sbjct: 80  TVTNYFLLNLSVADTMVSTLNVTFNFVYMLNSHWPFGELYCKISQFIAVLSVCASVFSLM 139

Query: 124 AISVD 128
           +IS+D
Sbjct: 140 SISID 144

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091524|ref|XP_970102.1| PREDICTED: similar to tachykinin receptor [Tribolium castaneum]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 106/125 (84%), Gaps = 4/125 (3%)

Query: 4   YENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMR 63
           Y  N+++   NDT E   NQF  P W+QV+W+ LYA MV+VATGGNLIVIWIV +HKRMR
Sbjct: 24  YTTNISY---NDT-EEGGNQFILPVWRQVLWSILYAGMVIVATGGNLIVIWIVFSHKRMR 79

Query: 64  TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLM 123
           TVTNYFL+NLS+AD MVSTLNVTFNFVYML+S WPFG  YCK++QF+AVLS+CASVF+LM
Sbjct: 80  TVTNYFLLNLSVADTMVSTLNVTFNFVYMLNSHWPFGELYCKISQFIAVLSVCASVFSLM 139

Query: 124 AISVD 128
           +IS+D
Sbjct: 140 SISID 144

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024897|gb|EGI65085.1| Tachykinin-like peptide receptor 99D [Acromyrmex echinatior]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 101/115 (87%)

Query: 14  NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
           N T  +  NQF  PWW+Q++WT L+A M+ VATGGNLIVIWIVLAH+RMRTVTNYFLVNL
Sbjct: 34  NYTDLAPRNQFVLPWWRQMIWTLLFAGMITVATGGNLIVIWIVLAHRRMRTVTNYFLVNL 93

Query: 74  SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           S+ADAMVSTLNVTFN+ YML+S WPFG  YCK++QF+AVL+ICASVFTLMAIS+D
Sbjct: 94  SIADAMVSTLNVTFNYTYMLNSHWPFGTLYCKISQFIAVLTICASVFTLMAISID 148

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0004622	519	Takr99D "Tachykinin-like recep	0.849	0.217	0.716	2.2e-43
FB|FBgn0004841	504	Takr86C "Tachykinin-like recep	0.827	0.218	0.527	7.7e-30
UNIPROTKB|F1NJ82	419	TACR3 "Uncharacterized protein	0.812	0.257	0.527	9.1e-29
UNIPROTKB|Q9W6I3	411	ASPR "Uncharacterized protein"	0.894	0.289	0.462	9.1e-29
UNIPROTKB|F1N2X0	463	TACR3 "Uncharacterized protein	0.812	0.233	0.527	1.2e-28
ZFIN|ZDB-GENE-090312-188	376	tacr2 "tachykinin receptor 2"	0.857	0.303	0.5	1.2e-28
RGD|3810	452	Tacr3 "tachykinin receptor 3"	0.812	0.238	0.527	1.9e-28
UNIPROTKB|F1S112	360	TACR3 "Uncharacterized protein	0.812	0.3	0.518	2.4e-28
ZFIN|ZDB-GENE-060526-185	413	tacr1a "tachykinin receptor 1a	0.857	0.276	0.495	2.4e-28
UNIPROTKB|P29371	465	TACR3 "Neuromedin-K receptor"	0.812	0.232	0.518	3.5e-28

FB|FBgn0004622 Takr99D "Tachykinin-like receptor at 99D" [Drosophila melanogaster (taxid:7227)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 81/113 (71%), Positives = 100/113 (88%)

Query:    16 TVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL 75
             ++E+ S  F  PWW+QV+W+ L+  MV+VATGGNLIV+WIV+  KRMRTVTNYF+VNLS+
Sbjct:    86 SMETGSFAFVVPWWRQVLWSILFGGMVIVATGGNLIVVWIVMTTKRMRTVTNYFIVNLSI 145

Query:    76 ADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFTLMAIS+D
Sbjct:   146 ADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFTLMAISID 198

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

FB|FBgn0004841 Takr86C "Tachykinin-like receptor at 86C" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 7.7e-30, P = 7.7e-30
 Identities = 58/110 (52%), Positives = 81/110 (73%)

Query:    19 SSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADA 78
             S +  +E PW ++ +W  ++  M+ VA  GN IV+WIV  H+ MRTVTNYFL+NLS+AD 
Sbjct:    71 SPTRPYELPWEQKTIWAIIFGLMMFVAIAGNGIVLWIVTGHRSMRTVTNYFLLNLSIADL 130

Query:    79 MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             ++S+LN  FNF++ML+SDWPFG  YC +  FVA +++  SVFTL+AIS D
Sbjct:   131 LMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFTLVAISFD 180

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1NJ82 TACR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query:    21 SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
             SNQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct:    28 SNQFVQPSWRIALWSLAYGGVVAVAIFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 87

Query:    81 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct:    88 AAFNTLINFIYALHSEWYFGEAYCRFHNFFPITAVFASIYSMTAIAVD 135

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9W6I3 ASPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 55/119 (46%), Positives = 82/119 (68%)

Query:    10 WIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYF 69
             W++     ESS+NQF QP W+  +W   Y  +VVV+  GN++V+WI+LAHKRMRTVTNYF
Sbjct:    15 WLLNASLNESSANQFVQPPWQVALWAVAYTLIVVVSVVGNVVVMWIILAHKRMRTVTNYF 74

Query:    70 LVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             LVNL+ A+A +S  N   NF Y + ++W +G  YCK   F  + ++ AS++++ AI++D
Sbjct:    75 LVNLAFAEASMSAFNTVVNFTYAIHNEWYYGLLYCKFHNFFPIAAVFASIYSMTAIALD 133

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

UNIPROTKB|F1N2X0 TACR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query:    21 SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
             +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct:    73 TNQFVQPSWRIALWSLAYGVVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 132

Query:    81 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AISVD
Sbjct:   133 AAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAISVD 180

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

ZFIN|ZDB-GENE-090312-188 tacr2 "tachykinin receptor 2" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/114 (50%), Positives = 81/114 (71%)

Query:    15 DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
             D  E+S N FEQP W+  +W   Y  +V+++  GN+ VIWI+LAHKRMRTVTNYF+VNL+
Sbjct:    18 DGNETSINLFEQPDWQVALWAIAYTLIVIISFIGNVTVIWIILAHKRMRTVTNYFIVNLA 77

Query:    75 LADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
              +DA ++T N  FNFVY L +DW FG  YCK   F  + ++ +S++++ AI+VD
Sbjct:    78 FSDASMATFNTVFNFVYALHNDWYFGLGYCKFQNFFPITAMFSSIYSMAAIAVD 131

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

RGD|3810 Tacr3 "tachykinin receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query:    21 SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
             +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA V
Sbjct:    62 TNQFVQPSWRIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASV 121

Query:    81 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct:   122 AAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 169

GO:0004995 "tachykinin receptor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0007568 "aging" evidence=IEP

GO:0010460 "positive regulation of heart rate" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEP;IDA

GO:0032590 "dendrite membrane" evidence=IDA

GO:0032809 "neuronal cell body membrane" evidence=IDA

GO:0042053 "regulation of dopamine metabolic process" evidence=IDA

GO:0042220 "response to cocaine" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IDA

GO:0043278 "response to morphine" evidence=IEP

GO:0045777 "positive regulation of blood pressure" evidence=IDA

GO:0060259 "regulation of feeding behavior" evidence=IDA

GO:0070474 "positive regulation of uterine smooth muscle contraction" evidence=IDA

UNIPROTKB|F1S112 TACR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query:    21 SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
             +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct:    74 TNQFVQPSWRIALWSLAYGVVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 133

Query:    81 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct:   134 AAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 181

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

ZFIN|ZDB-GENE-060526-185 tacr1a "tachykinin receptor 1a" [Danio rerio (taxid:7955)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 57/115 (49%), Positives = 82/115 (71%)

Query:    14 NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
             N+T E   NQF QP W+ V+W   Y+ +VVV+  GN+ VIWI+LAHKRMRTVTNYFLVNL
Sbjct:    22 NET-EIYWNQFVQPVWRIVLWAVAYSTIVVVSVVGNITVIWIILAHKRMRTVTNYFLVNL 80

Query:    74 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             + A+A +S  N   NFVY + ++W FG +YC+   F  + ++ AS++++ AI++D
Sbjct:    81 AFAEASMSAFNTVINFVYSVHNEWYFGLYYCRFHNFFPIAAVFASIYSMTAIALD 135

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P29371 TACR3 "Neuromedin-K receptor" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.5e-28, P = 3.5e-28
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query:    21 SNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMV 80
             +NQF QP W+  +W+  Y  +V VA  GNLIVIWI+LAHKRMRTVTNYFLVNL+ +DA +
Sbjct:    75 TNQFVQPSWRIALWSLAYGVVVAVAVLGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASM 134

Query:    81 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +  N   NF+Y L S+W FG  YC+   F  + ++ AS++++ AI+VD
Sbjct:   135 AAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVD 182

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0010460 "positive regulation of heart rate" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0060259 "regulation of feeding behavior" evidence=IEA

GO:0070474 "positive regulation of uterine smooth muscle contraction" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16177	NK3R_RAT	No assigned EC number	0.5277	0.8120	0.2389	yes	N/A
O97512	NK3R_RABIT	No assigned EC number	0.5185	0.8120	0.2312	yes	N/A
P29371	NK3R_HUMAN	No assigned EC number	0.5185	0.8120	0.2322	yes	N/A
P30975	TLR2_DROME	No assigned EC number	0.7168	0.8496	0.2177	yes	N/A
P47937	NK3R_MOUSE	No assigned EC number	0.5185	0.8120	0.2389	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-20
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	2e-05
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	4e-04
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	7e-04

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query: 54  WIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVL 113
            ++L  K++RT TN FL+NL++AD +       +   Y++  DWPFG   CK+  F+ V+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 114 SICASVFTLMAISVD 128
           +  AS+  L AIS+D
Sbjct: 61  NGYASILLLTAISID 75

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN+IVI  VL   +++T  + +L+NL+++D ++  + + F   Y +   W FG F CK+ 
Sbjct: 57  GNIIVI-YVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLPFQIYYYILFQWSFGEFACKIV 114

Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             +  +    S+  +  +SVD   
Sbjct: 115 SGLYYIGFYNSMNFITVMSVDRYI 138

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 37  LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
            Y  + ++   GN  +I ++L  K+++T+T+ ++ NL+++D ++  ++  F  +Y     
Sbjct: 104 FYIIIFILGLFGNAAII-MILFCKKIKTITDIYIFNLAISD-LIFVIDFPF-IIYNEFDQ 160

Query: 97  WPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTY 131
           W FG F CKV      +   +++F +  +S+D  +
Sbjct: 161 WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYF 195

Length = 417

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 37  LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
            Y  + +    GN++VI  VL  KR   V + +L N++++D M+      F+F +++ +D
Sbjct: 34  FYILLFIFGLIGNVLVI-AVLIVKRFMFVVDVYLFNIAMSDLML-----VFSFPFIIHND 87

Query: 97  ---WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
              W FG F CK+   V  +   +++F +  IS+D
Sbjct: 88  LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISID 122

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG4219|consensus	423		99.88
PHA03234	338	DNA packaging protein UL33; Provisional	99.87
PHA02834	323	chemokine receptor-like protein; Provisional	99.81
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.76
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.76
PHA03235	409	DNA packaging protein UL33; Provisional	99.75
KOG4220|consensus	503		99.73
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.66
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.45
KOG2087|consensus	363		99.19
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.81
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.34
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.3
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.96
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.9
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.62
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.46
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	97.1
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	96.97
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.67
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	96.53
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	94.6
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	94.51
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	92.97
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	92.41
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	89.09
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	86.86
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	81.12

>KOG4219|consensus

Probab=99.88  E-value=5.2e-23  Score=149.11  Aligned_cols=111  Identities=50%  Similarity=0.952  Sum_probs=106.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy14146         23 QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRF  102 (133)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~  102 (133)
                      ....+.+.+..+..+|..+.+++++||.++++++..+|++|+.+|+++.|||+||+.++++..+....+.+..+|.+|.+
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            46678888899999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             cchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        103 YCKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       103 ~C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .|++..|+..+...+|+++++++|+|||.||
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AI  137 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAI  137 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.87  E-value=4.9e-21  Score=139.80  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy14146         26 QPWWKQVMWTSLYAPMVVVATGGNLIVIWIV--LAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFY  103 (133)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~--~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~  103 (133)
                      ..+..+.....+|.+++++|++||.++++++  .+++++|+++|+++.|||+||++.++. .|...... ...|++|+..
T Consensus        27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~-~~~w~fG~~l  104 (338)
T PHA03234         27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR-EALFNFNQAF  104 (338)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH-hCCccCchhH
Confidence            3445667778899999999999999999955  455677899999999999999999764 56555443 4579999999


Q ss_pred             chhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        104 CKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       104 C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      |++.+++......+|++++++||+|||+||
T Consensus       105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aI  134 (338)
T PHA03234        105 CQCVLFIYHASCSYSICMLAIIATIRYKTL  134 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHeee
Confidence            999999999999999999999999999986

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.81  E-value=5.2e-19  Score=128.39  Aligned_cols=102  Identities=23%  Similarity=0.417  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhch
Q psy14146         29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQ  108 (133)
Q Consensus        29 ~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  108 (133)
                      ..+.+...++.++.++|++||+++++++.++|++ ++.++++.|||++|++. ....|..+... ..+|..|+..|++.+
T Consensus        26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~  102 (323)
T PHA02834         26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL  102 (323)
T ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence            3456778899999999999999999998876654 56899999999999986 55788766544 457999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        109 FVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       109 ~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +....+..+|++++++||+|||+||
T Consensus       103 ~~~~~~~~~Si~tL~~IsidRY~aI  127 (323)
T PHA02834        103 GVYFVGFFSNMFFVTLISIDRYILV  127 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            9999999999999999999999986

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.76  E-value=2.7e-17  Score=123.12  Aligned_cols=101  Identities=22%  Similarity=0.481  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF  109 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  109 (133)
                      .......++.+++++|++||+++++++.+ |++|++.++++.|||++|++.+ ...|.++... .++|.+|+..|++..+
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~  173 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISA  173 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHH
Confidence            34566678999999999999999987654 7888999999999999999885 5688777654 4679999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +......++.+.++++++|||+||
T Consensus       174 l~~~~~~~Si~~L~~isiDRYlaI  197 (417)
T PHA02638        174 SYYIGFFSNMFLITLMSIDRYFAI  197 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.76  E-value=8.9e-18  Score=122.21  Aligned_cols=104  Identities=22%  Similarity=0.460  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhc
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT  107 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  107 (133)
                      ...+......+.+++++|++||+++++++.++ ++|++.++++.|||++|++.++. .|.........+|..++..|+..
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKIV  114 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCCCCCcHHHHHH
Confidence            44566777889999999999999999998887 88999999999999999987654 66665555567788899999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        108 QFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       108 ~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .+....+..+|.+++++|++|||+||
T Consensus       115 ~~~~~~~~~~S~~~l~~iaidRy~aI  140 (335)
T PHA03087        115 SGLYYIGFYNSMNFITVMSVDRYIAI  140 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999986

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.75  E-value=4.5e-17  Score=121.59  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccch
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLA-HKRM-RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK  105 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~-~~~l-~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~  105 (133)
                      ...+.....++.++.++|++||+++++++.+ +|+. ++..++++.|||++|++. ++..|..+... ...|..|...|+
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck  106 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK  106 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence            4466678899999999999999999987543 3332 345578999999999987 45678765431 122334468999


Q ss_pred             hchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        106 VTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       106 ~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +.++....+..+|++++++||+|||+||
T Consensus       107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI  134 (409)
T PHA03235        107 FASLLYYASCTVGFATVALIAADRYRVI  134 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            9999999999999999999999999986

>KOG4220|consensus

Probab=99.73  E-value=4.9e-20  Score=134.16  Aligned_cols=104  Identities=27%  Similarity=0.505  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF  109 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  109 (133)
                      .......+-..+++++++||++|++.+.-+|++++..|+|+.+||+||++.+.+.+|++..+.+.+.|++|...|.+...
T Consensus        29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLa  108 (503)
T KOG4220|consen   29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLA  108 (503)
T ss_pred             EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHH
Confidence            33455567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +.++...+|++++.+|++|||..|
T Consensus       109 lDYvaSNASVmNLLiISFDRYFsV  132 (503)
T KOG4220|consen  109 LDYVASNASVMNLLIISFDRYFSV  132 (503)
T ss_pred             HHHHhhhhhhhhhheeeeecceee
Confidence            999999999999999999999875

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.66  E-value=5.2e-16  Score=107.17  Aligned_cols=86  Identities=37%  Similarity=0.696  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHH
Q psy14146         48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISV  127 (133)
Q Consensus        48 ~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isi  127 (133)
                      ||.++++++.++|++|++.++++.|||++|++.++...|........++|..++..|++..++...+...+.++++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~   80 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI   80 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999888887777766789999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy14146        128 DSTYQY  133 (133)
Q Consensus       128 dRy~av  133 (133)
                      |||+||
T Consensus        81 dRy~~i   86 (257)
T PF00001_consen   81 DRYLAI   86 (257)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            999975

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.45  E-value=8.5e-14  Score=98.33  Aligned_cols=89  Identities=21%  Similarity=0.354  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHH
Q psy14146         43 VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL  122 (133)
Q Consensus        43 ~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  122 (133)
                      ++|++||..++..+.++|++|+|.++++..+|++|++++....|.....  ..+....+..|..+.+...++...+...+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~   79 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDHQITRSECFWQIFFYIFFQCAQSVIM   79 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--HhheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988777766533  33445678899999999999999999999


Q ss_pred             HHHHHHHhhcC
Q psy14146        123 MAISVDSTYQY  133 (133)
Q Consensus       123 ~~isidRy~av  133 (133)
                      .+|++||++||
T Consensus        80 l~i~iDr~iaV   90 (257)
T PF10320_consen   80 LAIAIDRLIAV   90 (257)
T ss_pred             HHHHhhheeeE
Confidence            99999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=99.19  E-value=2.3e-11  Score=87.93  Aligned_cols=98  Identities=20%  Similarity=0.202  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------Cccccccccchhch
Q psy14146         36 SLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS-------SDWPFGRFYCKVTQ  108 (133)
Q Consensus        36 ~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~-------~~~~~~~~~C~~~~  108 (133)
                      +...++..++++||.+++......|...++..+++.|||+||+++++...-+...+...       .-|..+...|++.|
T Consensus        29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aG  108 (363)
T KOG2087|consen   29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAG  108 (363)
T ss_pred             ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHH
Confidence            45567888999999999998888777767889999999999999998766655554422       12335679999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        109 FVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       109 ~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      |+..++...|++.++.+++||+++|
T Consensus       109 flavFASElSv~~LT~itlEr~l~i  133 (363)
T KOG2087|consen  109 FLAVFASELSVFLLTLITLERWLSI  133 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999999999999999999875

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.81  E-value=5.6e-08  Score=69.25  Aligned_cols=92  Identities=13%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-ccc-cchhchhHhHHHHHHH
Q psy14146         41 MVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPF-GRF-YCKVTQFVAVLSICAS  118 (133)
Q Consensus        41 ~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~-~~~-~C~~~~~~~~~~~~~s  118 (133)
                      ++++|++.|.++++.+.+.|++|++.+.+-.+.+++|.+.++..... .......+... .+. .-.+.+.....+...+
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~-~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~   81 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFW-VVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG   81 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999998754433 33322222222 222 3334478888889999


Q ss_pred             HHHHHHHHHHHhhcC
Q psy14146        119 VFTLMAISVDSTYQY  133 (133)
Q Consensus       119 ~~~l~~isidRy~av  133 (133)
                      ..+..+||++|+.||
T Consensus        82 ~~~~~liaiNRf~ai   96 (274)
T PF10328_consen   82 PLSHLLIAINRFCAI   96 (274)
T ss_pred             HHHHHHHHHHHHhee
Confidence            999999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.34  E-value=2.9e-06  Score=61.53  Aligned_cols=92  Identities=11%  Similarity=0.222  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cc----cccc---ccchhchhH
Q psy14146         41 MVVVATGGNLIVIWIVLAHKRMRT-VTNYFLVNLSLADAMVSTLNVTFNFVYMLSS--DW----PFGR---FYCKVTQFV  110 (133)
Q Consensus        41 ~~~~gi~~N~~vl~~~~~~~~l~~-~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~--~~----~~~~---~~C~~~~~~  110 (133)
                      ++++|+++|.+-+.++.| |++|+ +.|.++..+|++|++..+...+.........  +.    +.+.   ........+
T Consensus         6 ~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l   84 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL   84 (318)
T ss_pred             EeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence            467899999999998855 66665 8999999999999999888777666443322  11    1111   122334567


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        111 AVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       111 ~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ...+...|.|..++||+.|+++|
T Consensus        85 ~~~~~~~S~WL~V~mA~iR~l~i  107 (318)
T PF10324_consen   85 SDIFRRISIWLGVLMALIRYLSI  107 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.30  E-value=2.2e-05  Score=53.74  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146         60 KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus        60 ~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~a  132 (133)
                      ++++.-++-++.||.++|++.++........+...++-..+...|..++++...+...+-+...++|++-|+.
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~  102 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI  102 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556679999999999998775543445544444445678999999999999999999999999988764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.96  E-value=0.00047  Score=50.06  Aligned_cols=101  Identities=13%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAH---KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKV  106 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~---~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~  106 (133)
                      .+.....+.....++|++||..++.+..++   ++.-+|.+..+.+||++.++...............++....+..++.
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI   84 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence            455667888899999999999999887663   22235899999999999998865544444444444544455668888


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHh
Q psy14146        107 TQFVAVLSICASVFTLMAISVDST  130 (133)
Q Consensus       107 ~~~~~~~~~~~s~~~l~~isidRy  130 (133)
                      ..+...+....|.|.-+.+++-=+
T Consensus        85 ~~~~~~f~~~~s~W~tt~LsvfYc  108 (303)
T PF05296_consen   85 IDFLWMFSNSSSLWFTTWLSVFYC  108 (303)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHh
Confidence            888888888999999888887544

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.90  E-value=0.00046  Score=50.09  Aligned_cols=96  Identities=19%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhH
Q psy14146         33 MWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAV  112 (133)
Q Consensus        33 ~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  112 (133)
                      .+..+..+..++.++|-++++....+.|++|+|.+-++.-++++|++..+.....   .. .++...+...|.+++++..
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~---~~-~~~~~~~s~lC~~Qafliq   83 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM---TL-SPSAGENSFLCQFQAFLIQ   83 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---Hh-cccCCCCCcchhhHhHHHH
Confidence            3445566778889999999999999999999999999999999999876543221   11 2223345689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q psy14146        113 LSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus       113 ~~~~~s~~~l~~isidRy~a  132 (133)
                      .+..++.+=.++||++=|..
T Consensus        84 ~f~~as~lWt~~iA~nly~~  103 (303)
T PF05462_consen   84 FFMLASFLWTLCIAFNLYLT  103 (303)
T ss_pred             HhhHHHHHHHHHHHHHhhhe
Confidence            99999988888899887653

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.62  E-value=0.0013  Score=48.03  Aligned_cols=99  Identities=11%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc---
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYC---  104 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C---  104 (133)
                      ...+......+.+.+++-.+.....++++.+++..|.|.+-.+.-|++.|+..........-.....     |...|   
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P  103 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYP  103 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCc
Confidence            4556677777888888888889999999988887788999999999999999875532222222222     22333   


Q ss_pred             ---hhchhHhHHHHHHHHHHHHHHHHHHhh
Q psy14146        105 ---KVTQFVAVLSICASVFTLMAISVDSTY  131 (133)
Q Consensus       105 ---~~~~~~~~~~~~~s~~~l~~isidRy~  131 (133)
                         .+.|.....+...+...-..++++|..
T Consensus       104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~  133 (313)
T PF10321_consen  104 RFIYIMGCIALGSWCGSCIICILLAINRCC  133 (313)
T ss_pred             hHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence               344556667788899999999999975

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.46  E-value=0.0046  Score=45.28  Aligned_cols=98  Identities=10%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcC----ccccccccchhc
Q psy14146         35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNF---VYMLSS----DWPFGRFYCKVT  107 (133)
Q Consensus        35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~---~~~~~~----~~~~~~~~C~~~  107 (133)
                      ..+-.+++++|++.++..+....+++.+|.-..+++....++.+++++.......   ......    +.......|...
T Consensus        20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l   99 (324)
T PF10292_consen   20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL   99 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence            3446677788888888888877777788876778888888888888755433332   222221    233456788888


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146        108 QFVAVLSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus       108 ~~~~~~~~~~s~~~l~~isidRy~a  132 (133)
                      ......+......+..++++||++|
T Consensus       100 R~~~~~~~~~~~~t~v~l~IER~iA  124 (324)
T PF10292_consen  100 RIPYNFGLFLVSFTTVSLVIERTIA  124 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.10  E-value=0.0091  Score=43.05  Aligned_cols=95  Identities=9%  Similarity=0.170  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------ccccccc
Q psy14146         37 LYAPMVVVATGGNLIVIWIVLAHK-RMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDW-----------PFGRFYC  104 (133)
Q Consensus        37 ~~~~~~~~gi~~N~~vl~~~~~~~-~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~-----------~~~~~~C  104 (133)
                      ++.+.+.+|++.|.++++.+.++. +.-+...+++.|-|+.|++.++...-.. ......++           ..|...|
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C   82 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFC   82 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHH
Confidence            456788999999999999987764 3335678999999999999976543322 22222221           2456778


Q ss_pred             hhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146        105 KVTQFVAVLSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus       105 ~~~~~~~~~~~~~s~~~l~~isidRy~a  132 (133)
                      .....+...+...+.+++.+--+.||..
T Consensus        83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~i  110 (292)
T PF10317_consen   83 FFCYHIMLHFSIHSGWSIILSFYYRYYI  110 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777778888888888888899875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.97  E-value=0.0083  Score=43.15  Aligned_cols=90  Identities=10%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhcCc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc--cccccccchhchhHhHHHH
Q psy14146         44 VATGGNLIVIWIVLAHKR----MRTVTNYFLVNLSLADAMVSTLNVTFNFVYML--SSD--WPFGRFYCKVTQFVAVLSI  115 (133)
Q Consensus        44 ~gi~~N~~vl~~~~~~~~----l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~--~~~--~~~~~~~C~~~~~~~~~~~  115 (133)
                      +.+.-...+++.+.+.|+    ++++.+-++.+.+++|++..+...........  ..+  ...++..-++.....+...
T Consensus         7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~   86 (283)
T PF10323_consen    7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL   86 (283)
T ss_pred             ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            344445566666655443    56899999999999999987664443332221  111  1122233456666777778


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy14146        116 CASVFTLMAISVDSTYQY  133 (133)
Q Consensus       116 ~~s~~~l~~isidRy~av  133 (133)
                      .......+.+|+.||.||
T Consensus        87 ~~~~~gi~lls~nR~~ai  104 (283)
T PF10323_consen   87 YIQCIGIVLLSLNRYLAI  104 (283)
T ss_pred             HHHHHhHHHHHHhhhheE
Confidence            889999999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.67  E-value=0.0063  Score=43.40  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHHHHh
Q psy14146         61 RMRTVTNYFLVNLSLADAMVSTL-NVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDST  130 (133)
Q Consensus        61 ~l~~~~~~~l~~La~aDl~~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy  130 (133)
                      +..+|.+..+.||++|+.+..+. +.|.....  .+...+++.+||...|...++...|+.+.+++|+-.-
T Consensus         6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~--~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQA   74 (265)
T PF03402_consen    6 HRLKPIDLILIHLALANILVLLSRGIPQTMAF--FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQA   74 (265)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHH--hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhh
Confidence            34568999999999999999766 44433222  2222358899999999999999999999999987543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.53  E-value=0.039  Score=39.64  Aligned_cols=99  Identities=7%  Similarity=0.029  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccccccccchhchhHh
Q psy14146         35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS---SDWPFGRFYCKVTQFVA  111 (133)
Q Consensus        35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~---~~~~~~~~~C~~~~~~~  111 (133)
                      ..+-.+.+.+....|..+++.+.++|+.+++...+..--...|.+.+....+........   ++....+..=...+...
T Consensus         9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~   88 (273)
T PF10316_consen    9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPS   88 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhH
Confidence            344556777888999999999987777434544455556788999987765544433321   11110122222334455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q psy14146        112 VLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       112 ~~~~~~s~~~l~~isidRy~av  133 (133)
                      ...+.........+|+||.+|+
T Consensus        89 ~~~~~iR~~l~~~Ia~dR~~A~  110 (273)
T PF10316_consen   89 SNLGSIRSILALIIALDRVFAV  110 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5557788889999999999884

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.60  E-value=1.3  Score=32.70  Aligned_cols=98  Identities=11%  Similarity=0.131  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcCCc-hHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHhcCc----cccccccchh
Q psy14146         35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRT-VTNYFLVNLSLADAMVSTLNVT-FN-F-VYMLSSD----WPFGRFYCKV  106 (133)
Q Consensus        35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~-~~~~~l~~La~aDl~~~~~~~~-~~-~-~~~~~~~----~~~~~~~C~~  106 (133)
                      ..+..++.+++.++....+..+.++.-.+. .+..++.+|..+++=......- .. + ..+...+    .......|..
T Consensus        24 ~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~  103 (328)
T PF02117_consen   24 QIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFP  103 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceee
Confidence            445556667777777777777766665554 4455556666555533222111 11 1 1111122    3356778998


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146        107 TQFVAVLSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus       107 ~~~~~~~~~~~s~~~l~~isidRy~a  132 (133)
                      ......++.....+.-+++.+||-+|
T Consensus       104 ~~~~~~~~~~~~~~~q~aL~idRl~a  129 (328)
T PF02117_consen  104 YYYFYYFTNSGMIFIQFALTIDRLLA  129 (328)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999899999999999999876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.51  E-value=0.54  Score=33.24  Aligned_cols=93  Identities=5%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCc--C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC------cc-ccccccchhchh
Q psy14146         41 MVVVATGGNLIVIWIVLAHKR--M-RTVTNYFLVNLSLADAMVSTLNVTFNFVYML-SS------DW-PFGRFYCKVTQF  109 (133)
Q Consensus        41 ~~~~gi~~N~~vl~~~~~~~~--l-~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~-~~------~~-~~~~~~C~~~~~  109 (133)
                      -++.+++.+..+++++.++|+  . +++.+.+...-++.+++.-+...+..-.... .+      .+ +..+.......+
T Consensus         7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~   86 (275)
T PF02118_consen    7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF   86 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence            345566677788888877776  4 6677776666667777665444333111111 00      00 122345566667


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +...+..+...+...+|++|+-+|
T Consensus        87 l~~~~~~~Q~~~~~~is~nR~t~v  110 (275)
T PF02118_consen   87 LQYYFAYVQYLSTILISLNRFTSV  110 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999998653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.97  E-value=0.068  Score=37.17  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=0.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHH
Q psy14146         42 VVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT  121 (133)
Q Consensus        42 ~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~  121 (133)
                      +.+.+++-.+.+......|++|+.++....||++++++..+..... ......+..+..+..|...+.+...+..++..=
T Consensus        11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~W   89 (242)
T PF00002_consen   11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFW   89 (242)
T ss_dssp             HH------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHH
Confidence            3334444445555555567777777788889999998876543211 111101111011235999999888888887777


Q ss_pred             HHHHHHHHhh
Q psy14146        122 LMAISVDSTY  131 (133)
Q Consensus       122 l~~isidRy~  131 (133)
                      +.+.+++-|.
T Consensus        90 m~~~~~~l~~   99 (242)
T PF00002_consen   90 MLVEAFYLYR   99 (242)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhe
Confidence            7777777654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.41  E-value=0.28  Score=35.46  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------Cccccccccchhch
Q psy14146         40 PMVVVATGGNLIVIWIVLAHKRMR-TVTNYFLVNLSLADAMVSTLNVTFNFVYMLS----------SDWPFGRFYCKVTQ  108 (133)
Q Consensus        40 ~~~~~gi~~N~~vl~~~~~~~~l~-~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~----------~~~~~~~~~C~~~~  108 (133)
                      +..+++++.|.+.++.+.++.+.+ ..-.+++...|+.|++.+..-....-..+..          +++..++.......
T Consensus         7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (307)
T PF10326_consen    7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILL   86 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehh
Confidence            456788999999999987653332 3345677788888888876543222211111          11223344455555


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        109 FVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       109 ~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .....+...+...++.-=+.||.||
T Consensus        87 ~~y~~~f~~~~~llaihFiYRY~av  111 (307)
T PF10326_consen   87 AIYCGCFGMSFSLLAIHFIYRYWAV  111 (307)
T ss_pred             hhhhhhHHHHHHHHHhHhhhheeee
Confidence            5666667777777777778999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=89.09  E-value=7.7  Score=29.43  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------cccccchhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146         67 NYFLVNLSLADAMVSTLNVTFNFVYMLSSDWP-----------FGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ  132 (133)
Q Consensus        67 ~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~a  132 (133)
                      .-.+..+++||++.++-...-...+...++..           .....|........+++.++-+=..+-|+|-|+.
T Consensus        68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv  144 (405)
T PF02101_consen   68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLV  144 (405)
T ss_pred             chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            35677999999999876655555665444221           1236888887777788889989899999998874

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=86.86  E-value=2.1  Score=29.58  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=25.9

Q ss_pred             cccccchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146         99 FGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .+-..|.+..-+...+...+-...+++|++||.-|
T Consensus       112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~V  146 (226)
T PF06681_consen  112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIV  146 (226)
T ss_pred             EEEEeehHHHhHHHHHhhhhccchhhhhhhhhhee
Confidence            45678988777666666666666778999999754

The function of this family is unknown.

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=81.12  E-value=17  Score=25.72  Aligned_cols=34  Identities=3%  Similarity=0.113  Sum_probs=27.4

Q ss_pred             ccccchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        100 GRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .+..++.......+..+.+.+....+++||++|.
T Consensus        81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl  114 (236)
T PF02175_consen   81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIAL  114 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4456666667777888899999999999999983

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		3e-23
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		2e-12
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		3e-12
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		9e-12
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		1e-10
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		2e-10
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		3e-10
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		5e-10
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		5e-10
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		5e-10
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-10
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-10
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		2e-09
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		9e-09
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		9e-09
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		3e-08
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		5e-07
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		1e-06
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		3e-06
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		8e-06
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		2e-05
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-05
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		2e-05
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-05
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		2e-05
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		2e-05
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		4e-05
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		1e-04
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		1e-04
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		2e-04
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		2e-04
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		2e-04
2x72_A	349	Crystal Structure Of The Constitutively Active E113		2e-04

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 77/110 (70%)
Query: 19  SSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADA 78
           S  NQF QP W+ V+W + Y  +VV +  GN++V+WI+LAHKRMRTVTNYFLVNL+ A+A
Sbjct: 20  SEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEA 79
Query: 79  MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
            ++  N   NF Y + ++W +G FYCK   F  + ++ AS++++ A++ D
Sbjct: 80  SMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFD 129

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 27  PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT 86
           P   +V    LY  + V    GN +V++++L H +M+T TN ++ NL+LAD +V  L + 
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLP 179
Query: 87  FNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           F    +L   WPFG   CK    +   ++  S FTL A+SVD
Sbjct: 180 FQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVD 221

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 32  VMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVY 91
           V+ T++Y+ + VV   GN +V+++++ + +M+T TN ++ NL+LADA+V+T     + VY
Sbjct: 23  VIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVY 82
Query: 92  MLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +++S WPFG   CK+   +   ++  S+FTL  +SVD
Sbjct: 83  LMNS-WPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVD 118

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 36  SLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS 95
           +LY+ + VV   GN +V+++++ + +M+T TN ++ NL+LADA+ +T  + F  V  L  
Sbjct: 22  ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMG 80
Query: 96  DWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
            WPFG   CK+   +   ++  S+FTL  +SVD
Sbjct: 81  TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+  
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW 258
Query: 108 QFVAVLSICASVFTLMAISVD 128
             + VL + AS+ TL  I+VD
Sbjct: 259 TSIDVLCVTASIETLCVIAVD 279

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+  
Sbjct: 22  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW 81
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 82  TSIDVLCVTASIETLCVIAVDRYF 105

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 35  TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS 94
           T+LY+ +  V   GN++V++ ++ + +++T TN ++ NL+LADA+ +T  + F     L 
Sbjct: 18  TALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLM 76
Query: 95  SDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             WPFG   CK    +   ++  S+FTL  +SVD
Sbjct: 77  ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVD 110

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 117
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS++TL  I+VD  +
Sbjct: 118 TSIDVLCVTASIWTLCVIAVDRYF 141

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 51  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 110
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 111 TSIDVLCVTASIETLCVIAVDRYF 134

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 57  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 116
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 117 TSIDVLCVTASIETLCVIAVDRYF 140

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 117
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 118 TSIDVLCVTASIETLCVIAVDRYF 141

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 27  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 86
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 87  TSIDVLCVTASIETLCVIAVDRYF 110

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+  
Sbjct: 50  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 109
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 110 TSIDVLCVTASIETLCVIAVDRYF 133

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++VI  +   +R++TVTNYF+ +L+ AD ++    V F    +L   W FG F+C+  
Sbjct: 26  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFW 85
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
             + VL + AS+ TL  I+VD  +
Sbjct: 86  TSIDVLCVTASIETLCVIAVDRYF 109

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 37  LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
           L A +V++   GN++VI  + + +R++T+TN F+ +L+ AD +V  L V F    ++   
Sbjct: 17  LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 97  WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           W +G F C++   + VL + AS+ TL  I++D
Sbjct: 77  WLWGSFLCELWTSLDVLCVTASIETLCVIAID 108

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%)
Query: 37  LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
           L A +V++   GN++VI  + + +R++T+TN F+ +L+ AD +V  L V F    ++   
Sbjct: 17  LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 97  WPFGRFYCKVTQFVAVLSICASVFTLMAISVDS 129
           W +G F C++   + VL + AS+ TL  I++D 
Sbjct: 77  WLWGSFLCELWTSLDVLCVTASIETLCVIAIDR 109

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)
Query: 41  MVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFG 100
           + +V  G NL+V++ V + +++ TV N ++V+LS+AD +V  + +  N +Y+L S W  G
Sbjct: 18  ICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLG 77
Query: 101 RFYCKVTQFVAVLSICASVFTLMAISVDS 129
           R  C     +  ++  AS+F++  + +D 
Sbjct: 78  RPLCLFWLSMDYVASTASIFSVFILCIDR 106

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 29  WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFN 88
           W+ V    L   + +V   GN++VI     +K+++TV NYFL++L+ AD ++  +++   
Sbjct: 10  WQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLF 69
Query: 89  FVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTY 131
             Y++ + W  G   C +   +  ++  ASV  L+ IS D  +
Sbjct: 70  TTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYF 112

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 38  YAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT-FNFVYMLSSD 96
           Y  +++    GN +V   VL  + ++T TNY +V+L++AD +V+TL +    ++ +    
Sbjct: 45  YCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV 104
Query: 97  WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           W F R  C V   + V+   AS++ L AIS+D
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISID 136

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32  VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
           +M +S+Y      + V+A  GN++V W V  +  ++ VTNYF+V+L+ AD  V  L + F
Sbjct: 28  IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 87
Query: 88  NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
                +S+ +      C  +  FV VL+  +S+F+L+AI++D
Sbjct: 88  AIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 126

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 32  VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
           +M +S+Y      + V+A  GN++V W V  +  ++ VTNYF+V+L+ AD +V  L + F
Sbjct: 3   IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPF 62
Query: 88  NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
                +S+ +      C  +  FV VL+  +S+F+L+AI++D
Sbjct: 63  AIT--ISTGFCAACHGCLFIACFVLVLAQ-SSIFSLLAIAID 101

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 18  ESSSNQFEQP-WWKQVMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVN 72
           +   +   QP     +M +S+Y      + V+A  GN++V W V  +  ++ VTNYF+V+
Sbjct: 3   KDDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVS 62
Query: 73  LSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
           L+ AD  V  L + F     +S+ +      C  +  FV VL+  +S+F+L+AI++D
Sbjct: 63  LAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 116

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15  DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
           D+++    + E   + ++   ++Y+ + +    GN +VI ++   K++R++T+ + ++LS
Sbjct: 32  DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75  LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +AD +     +T  F      ++W FG F CK    +  +++ +SV+ L  IS+D
Sbjct: 92  VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15  DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
           D+++    + E   + ++   ++Y+ + +    GN +VI ++   K++R++T+ + ++LS
Sbjct: 32  DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75  LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +AD +     +T  F      ++W FG F CK    +  +++ +SV+ L  IS+D
Sbjct: 92  VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15  DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
           D+++    + E   + ++   ++Y+ + +    GN +VI ++   K++R++T+ + ++LS
Sbjct: 32  DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75  LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           +AD +     +T  F      ++W FG F CK    +  +++ +SV+ L  IS+D
Sbjct: 92  VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32  VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
           +M +S+Y      + V+A  GN++V W V  +  ++ VTNYF+V+L+ AD  V  L + F
Sbjct: 3   IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 62
Query: 88  NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
                +S+ +      C  +  FV VL+  +S+F+L+AI++D
Sbjct: 63  AIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 101

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32  VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
           +M +S+Y      + V+A  GN++V W V  +  ++ VTNYF+V+ + AD +V  L + F
Sbjct: 3   IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPF 62
Query: 88  NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
                +S+ +      C  +  FV VL+  +S+F+L+AI++D
Sbjct: 63  AIA--ISTGFCAACHGCLFIACFVLVLTA-SSIFSLLAIAID 101

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 48  GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
           GN++V+  +  ++ ++TV NYFL +L+ AD ++   ++    +Y +   WP G   C + 
Sbjct: 40  GNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLW 99
Query: 108 QFVAVLSICASVFTLMAISVD 128
             +  +   ASV  L+ IS D
Sbjct: 100 LALDYVVSNASVMNLLIISFD 120

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 26  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 85  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 25  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 84  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 134

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 26  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 85  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 26  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 85  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 25  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 84  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 134

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
           E+      +PW   ++   ++  ++++    N + +++ + HK++RT  NY L+NL++AD
Sbjct: 26  EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             +     T      L   + FG   C +  F A L    ++++L+ ++++
Sbjct: 85  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-42
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-36
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-36
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	3e-24
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	5e-24
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-24
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	6e-24
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	5e-23
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	5e-23
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	5e-23
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	6e-23
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-22
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	6e-22
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-21
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	4e-20

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  142 bits (361), Expect = 1e-42
 Identities = 52/128 (40%), Positives = 85/128 (66%), Gaps = 5/128 (3%)

Query: 6   NNLTWIMANDTVESSSN-----QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHK 60
           +N+  + ++ +   S+N     QF QP W+ V+W + Y  +VV +  GN++V+WI+LAHK
Sbjct: 2   DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61

Query: 61  RMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 120
           RMRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS++
Sbjct: 62  RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIY 121

Query: 121 TLMAISVD 128
           ++ A++ D
Sbjct: 122 SMTAVAFD 129

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  126 bits (318), Expect = 2e-36
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 5   ENNLTWIMANDTVESSS-----NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAH 59
             N     +N T    S       +    W+  M  +    ++++    N + +++ + H
Sbjct: 7   GPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQH 66

Query: 60  KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASV 119
           K++RT  NY L+NL++AD  +     T      L   + FG   C +  F A L    ++
Sbjct: 67  KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 126

Query: 120 FTLMAISVD 128
           ++L+ ++++
Sbjct: 127 WSLVVLAIE 135

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 95.4 bits (237), Expect = 3e-24
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 2   SLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPM---VVVATGGNLIVIWIVLA 58
           S + N              +  ++     +V    +   M   V+    GN++VI  +  
Sbjct: 150 SRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAK 209

Query: 59  HKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICAS 118
            +R++TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+    + VL + AS
Sbjct: 210 FERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTAS 269

Query: 119 VFTLMAISVD 128
           + TL  I+VD
Sbjct: 270 IETLCVIAVD 279

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 94.8 bits (235), Expect = 5e-24
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 14  NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
           +D           P     ++ ++   + V+A  GN++V W V  +  ++ VTNYF+V+L
Sbjct: 4   DDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSL 63

Query: 74  SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           + AD  V  L + F         +      C       ++   +S+F+L+AI++D
Sbjct: 64  AAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFSLLAIAID 116

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 94.8 bits (235), Expect = 5e-24
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 6   NNLTWIMANDTVESSSNQFEQPW---WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRM 62
            N +  +       + +            V    + + +V+    GN++VI  +   +R+
Sbjct: 12  GNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERL 71

Query: 63  RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 122
           +TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ TL
Sbjct: 72  QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETL 131

Query: 123 MAISVD 128
             I+VD
Sbjct: 132 CVIAVD 137

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 94.4 bits (234), Expect = 6e-24
 Identities = 27/115 (23%), Positives = 55/115 (47%)

Query: 14  NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
           + +  S +       ++ V    +   + +V   GN++V+  +  ++ ++TV NYFL +L
Sbjct: 6   DSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSL 65

Query: 74  SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           + AD ++   ++    +Y +   WP G   C +   +  +   ASV  L+ IS D
Sbjct: 66  ACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 92.1 bits (228), Expect = 5e-23
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 13  ANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVN 72
            N T  + ++           +   Y  +++    GN +V   VL  + ++T TNY +V+
Sbjct: 20  LNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVS 79

Query: 73  LSLADAMVSTLNVTFNFVYMLSSD-WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           L++AD +V+TL + +     ++   W F R  C V   + V+   AS++ L AIS+D
Sbjct: 80  LAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISID 136

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 92.0 bits (228), Expect = 5e-23
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 16  TVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL 75
           +               +   +LY+ + VV   GN +V+++++ + +M+T TN ++ NL+L
Sbjct: 2   SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLAL 61

Query: 76  ADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           ADA+  T  + F  V  L   WPFG   CK+   +   ++  S+FTL  +SVD
Sbjct: 62  ADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 91.7 bits (227), Expect = 5e-23
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 18  ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
               +    P     ++ ++   + V+A  GN++V W V  +  ++ VTNYF+V+L+ AD
Sbjct: 18  YKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD 77

Query: 78  AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
             V  L + F         +      C       ++   +S+F+L+AI++D
Sbjct: 78  IAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFSLLAIAID 126

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 91.7 bits (227), Expect = 6e-23
 Identities = 27/102 (26%), Positives = 57/102 (55%)

Query: 27  PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT 86
              + +    + + + +V  G NL+V++ V + +++ TV N ++V+LS+AD +V  + + 
Sbjct: 4   ASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63

Query: 87  FNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
            N +Y+L S W  GR  C     +  ++  AS+F++  + +D
Sbjct: 64  MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCID 105

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 90.0 bits (223), Expect = 2e-22
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 2   SLYENNLTWIMANDTVESSSNQFEQ-PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHK 60
            L +N   W   +  V     +F+Q P               ++  GGN IVI++    K
Sbjct: 4   DLRDNETWWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTK 63

Query: 61  RMRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASV 119
            ++T  N F++NL+ +D   S +N      +      W FG   CKV  F+  +    S+
Sbjct: 64  SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSI 123

Query: 120 FTLMAISVD 128
            T+  IS+D
Sbjct: 124 MTMAMISID 132

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 87.5 bits (217), Expect = 6e-22
 Identities = 31/98 (31%), Positives = 58/98 (59%)

Query: 31  QVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFV 90
           +   + L A +V++   GN++VI  + + +R++T+TN F+ +L+ AD +V  L V F   
Sbjct: 11  EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT 70

Query: 91  YMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
            ++   W +G F C++   + VL + AS+ TL  I++D
Sbjct: 71  LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAID 108

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 88.4 bits (218), Expect = 1e-21
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 7   NLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVT 66
           N   I+ +       N          + + ++  +       N+ V+  +   K+     
Sbjct: 39  NYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPM 98

Query: 67  NYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAIS 126
            YF+ NL+L+D +      T N +   ++ +        + +    +++ ASVF+L+AI+
Sbjct: 99  YYFIGNLALSDLLAGVA-YTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIA 157

Query: 127 VD 128
           ++
Sbjct: 158 IE 159

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 83.8 bits (207), Expect = 4e-20
 Identities = 28/115 (24%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 14  NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
            D+++    + E   + ++   ++Y+ + +    GN +VI ++   K++R++T+ + ++L
Sbjct: 31  YDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 90

Query: 74  SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
           S+AD +   + + F  V  + ++W FG F CK    +  +++ +SV+ L  IS+D
Sbjct: 91  SVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.9
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.88
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.88
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.87
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.86
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.86
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.86
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.85
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.85
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.84
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.83
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.83
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.83
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.83
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.83
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.83
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.83
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.81
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	97.72
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.31

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.90  E-value=1.7e-22  Score=145.91  Aligned_cols=111  Identities=44%  Similarity=0.919  Sum_probs=99.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy14146         23 QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRF  102 (133)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~  102 (133)
                      +...+.+.......++.+++++|++||.++++++.++|++|++.++++.|||++|++.++...|........++|..++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~  103 (364)
T 2ks9_A           24 QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLF  103 (364)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHH
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHH
Confidence            34444555556678899999999999999999999999999999999999999999999888898887777788999999


Q ss_pred             cchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        103 YCKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       103 ~C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .|++..++...+..+|++++++||+|||+||
T Consensus       104 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI  134 (364)
T 2ks9_A          104 YCKFHNFFPIAAVFASIYSMTAVAFDRYMAI  134 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999985

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.88  E-value=1.9e-22  Score=152.50  Aligned_cols=110  Identities=21%  Similarity=0.412  Sum_probs=95.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccc
Q psy14146         24 FEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRM---RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS--SDWP   98 (133)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l---~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~--~~~~   98 (133)
                      .......+.+...+|.+++++|++||+++++++.++|++   +++.|+++.|||++|++.+++.+|..+.....  +.|.
T Consensus        25 ~~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~  104 (510)
T 4grv_A           25 VNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWA  104 (510)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCS
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            344556677778889999999999999999999887654   47889999999999999999999988877653  5699


Q ss_pred             cccccchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146         99 FGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +|...|++..++...+..+|++++++||+|||+||
T Consensus       105 ~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai  139 (510)
T 4grv_A          105 FGDAGCRGYYFLRDACTYATALNVASLSVARYLAI  139 (510)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEE
Confidence            99999999999999999999999999999999986

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.88  E-value=4.5e-22  Score=149.92  Aligned_cols=106  Identities=31%  Similarity=0.464  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhc
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT  107 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  107 (133)
                      .........++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.....+.|.+|...|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW  116 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence            33445667889999999999999999999999999999999999999999999998899988888888999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        108 QFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       108 ~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .++..++..+|++++++||+|||+||
T Consensus       117 ~~~~~~~~~~Si~~l~~isidRy~aI  142 (500)
T 2rh1_A          117 TSIDVLCVTASIETLCVIAVDRYFAI  142 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            99999999999999999999999986

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.87  E-value=2.4e-21  Score=138.81  Aligned_cols=107  Identities=21%  Similarity=0.384  Sum_probs=98.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchh
Q psy14146         27 PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKV  106 (133)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~  106 (133)
                      .++.......++.+++++|++||.++++++.++|++|++.++++.|||++|++.++...|........+.|..++..|++
T Consensus        34 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  113 (349)
T 1u19_A           34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL  113 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHH
Confidence            45566677788999999999999999999999999999999999999999999999888888877778889999999999


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        107 TQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       107 ~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ..++...+..+|++++++|++|||+||
T Consensus       114 ~~~~~~~~~~~s~~~l~~isidRy~aI  140 (349)
T 1u19_A          114 EGFFATLGGEIALWSLVVLAIERYVVV  140 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            999999999999999999999999985

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.86  E-value=4.4e-21  Score=135.38  Aligned_cols=102  Identities=26%  Similarity=0.458  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF  109 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  109 (133)
                      .+......|.+++++|++||.++++++.++|++|+|.|+++.|||++|++.++. .|...... ..+|..|+..|+...+
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~-~~~~~~~~~~c~~~~~   87 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASK-VNGWIFGTFLCKVVSL   87 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHH-HSSSCCSSHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhc-cCCCccchhHHHHHhh
Confidence            456777889999999999999999999999999999999999999999998754 66665554 3569999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ....+..+|.+++++||+|||+||
T Consensus        88 ~~~~~~~~s~~~l~~isidRy~aI  111 (296)
T 2lnl_A           88 LKEVNFYSGILLLACISVDRYLAI  111 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999986

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.86  E-value=1.6e-21  Score=144.59  Aligned_cols=104  Identities=25%  Similarity=0.468  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF  109 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  109 (133)
                      ...+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.....+.|..+...|++..+
T Consensus        22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  101 (467)
T 3uon_A           22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLA  101 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHH
Confidence            34667788999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +..++..+|++++++||+|||+||
T Consensus       102 ~~~~~~~~s~~~l~~isidRy~ai  125 (467)
T 3uon_A          102 LDYVVSNASVMNLLIISFDRYFCV  125 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999985

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.86  E-value=4.5e-21  Score=141.94  Aligned_cols=106  Identities=31%  Similarity=0.590  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchh
Q psy14146         27 PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKV  106 (133)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~  106 (133)
                      ....+.....++.+++++|++||+++++++.++|++|++.++++.|||++|++.++. .|..+.....+.|..+...|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~   91 (464)
T 4dkl_A           13 SMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKI   91 (464)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhh
Confidence            344567788899999999999999999999999999999999999999999999876 8888888888899999999999


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        107 TQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       107 ~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ..++..++..+|++++++||+|||+||
T Consensus        92 ~~~~~~~~~~~s~~~l~~is~dRy~aI  118 (464)
T 4dkl_A           92 VISIDYYNMFTSIFTLCTMSVDRYIAV  118 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999985

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.85  E-value=4.4e-21  Score=142.86  Aligned_cols=105  Identities=29%  Similarity=0.474  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccccccccchhc
Q psy14146         29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS-SDWPFGRFYCKVT  107 (133)
Q Consensus        29 ~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  107 (133)
                      ..+.+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+..... +.|..+...|++.
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            345566678899999999999999999999999999999999999999999998889988876665 6799999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        108 QFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       108 ~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .++..++..+|++++++||+|||+||
T Consensus       116 ~~~~~~~~~~s~~~l~~is~dRy~aI  141 (481)
T 3pbl_A          116 VTLDVMMCTASIWNLCAISIDRYTAV  141 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999985

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.85  E-value=9.4e-21  Score=141.70  Aligned_cols=107  Identities=25%  Similarity=0.511  Sum_probs=96.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Q psy14146         25 EQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYC  104 (133)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C  104 (133)
                      ......+.+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.+ +..|..+..... +|..+...|
T Consensus        42 ~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C  119 (502)
T 3odu_A           42 ENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLC  119 (502)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhh
Confidence            344556778888999999999999999999999999999999999999999999996 568887766544 799999999


Q ss_pred             hhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        105 KVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       105 ~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ++..++..++..+|++++++||+|||+||
T Consensus       120 ~~~~~~~~~~~~~s~~~l~~is~dRy~ai  148 (502)
T 3odu_A          120 KAVHVIYTVNLYSSVWILAFISLDRYLAI  148 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            99999999999999999999999999986

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=139.71  Aligned_cols=107  Identities=21%  Similarity=0.451  Sum_probs=94.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccccc
Q psy14146         26 QPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYM-LSSDWPFGRFYC  104 (133)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~-~~~~~~~~~~~C  104 (133)
                      +....+.+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++. .|...... ..+.|..+...|
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C   93 (484)
T 3vw7_A           15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELC   93 (484)
T ss_dssp             TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHH
Confidence            4466677888999999999999999999999999999999999999999999999765 55544444 445899999999


Q ss_pred             hhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        105 KVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       105 ~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ++..++..++..+|++++++||+|||+||
T Consensus        94 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI  122 (484)
T 3vw7_A           94 RFVTAAFYCNMYASILLMTVISIDRFLAV  122 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHheEE
Confidence            99999999999999999999999999985

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.83  E-value=2.1e-20  Score=141.54  Aligned_cols=101  Identities=16%  Similarity=0.247  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHh
Q psy14146         32 VMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVA  111 (133)
Q Consensus        32 ~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  111 (133)
                      .+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.. ....|..+...|++..++.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~~  142 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSM  142 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHHH
Confidence            677888999999999999999999999999999999999999999999998888876655 5567888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q psy14146        112 VLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       112 ~~~~~~s~~~l~~isidRy~av  133 (133)
                      .++..+|++++++||+|||+||
T Consensus       143 ~~~~~~S~~~l~~isidRy~aI  164 (520)
T 3v2y_A          143 FVALSASVFSLLAIAIERYITM  164 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhEE
Confidence            9999999999999999999986

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.83  E-value=3.9e-20  Score=136.48  Aligned_cols=108  Identities=25%  Similarity=0.422  Sum_probs=96.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy14146         24 FEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFY  103 (133)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~  103 (133)
                      ..++.....+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+...  ..|..+...
T Consensus        24 ~~~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~  101 (447)
T 4eiy_A           24 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHG  101 (447)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHH
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccH
Confidence            344556667888899999999999999999999999999999999999999999999988898877643  456778899


Q ss_pred             chhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        104 CKVTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       104 C~~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      |++..++..++..+|++++++||+|||+||
T Consensus       102 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI  131 (447)
T 4eiy_A          102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAI  131 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHeEE
Confidence            999999999999999999999999999985

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.83  E-value=5.1e-20  Score=136.60  Aligned_cols=106  Identities=25%  Similarity=0.344  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCccccccccchh
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKV  106 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~-~~~~~~~~~~~~~~~~~~~C~~  106 (133)
                      .........++.+++++|++||+++++++.++|++|++.++++.|||++|++.++.. .|..+.....++|..+...|++
T Consensus        31 ~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~  110 (448)
T 2z73_A           31 DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHH
Confidence            344556678889999999999999999999999999999999999999999998764 7777777777889999999999


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        107 TQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       107 ~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ..++...+..+|++++++||+|||+||
T Consensus       111 ~~~~~~~~~~~S~~~l~~isidRy~aI  137 (448)
T 2z73_A          111 YGFIGGIFGFMSIMTMAMISIDRYNVI  137 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999986

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.83  E-value=1.6e-20  Score=132.52  Aligned_cols=106  Identities=29%  Similarity=0.457  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhc
Q psy14146         28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT  107 (133)
Q Consensus        28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  107 (133)
                      ...+.....++.+++++|++||.++++++.++|++|++.++++.|||++|++.++...|........++|..++..|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   87 (315)
T 4amj_A            8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHH
Confidence            34556777888999999999999999999999999999999999999999999888899888888888999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        108 QFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       108 ~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      .++...+..+|.++++++|+|||+||
T Consensus        88 ~~~~~~~~~~S~~~l~~isidRy~aI  113 (315)
T 4amj_A           88 TSLDVLCVTASIETLCVIAIDRYLAI  113 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999985

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=139.37  Aligned_cols=103  Identities=26%  Similarity=0.516  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhH
Q psy14146         31 QVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFV  110 (133)
Q Consensus        31 ~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  110 (133)
                      ......++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.....+.|..+...|++..++
T Consensus         8 ~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~   87 (452)
T 3rze_A            8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSM   87 (452)
T ss_dssp             -CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999988888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        111 AVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       111 ~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ..++..+|++++++||+|||+||
T Consensus        88 ~~~~~~~s~~~l~~is~dRy~aI  110 (452)
T 3rze_A           88 DYVASTASIFSVFILCIDRYRSV  110 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999985

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.83  E-value=1.7e-20  Score=139.56  Aligned_cols=102  Identities=25%  Similarity=0.449  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146         30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF  109 (133)
Q Consensus        30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  109 (133)
                      ...+...++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+...  ..|..+...|++..+
T Consensus        20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~   97 (488)
T 3eml_A           20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIAC   97 (488)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999988898877643  367788899999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        110 VAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       110 ~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      +..++..+|++++++||+|||+||
T Consensus        98 ~~~~~~~~s~~~l~~is~dRy~aI  121 (488)
T 3eml_A           98 FVLVLTQSSIFSLLAIAIDRYIAI  121 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhheeE
Confidence            999999999999999999999985

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.81  E-value=8.9e-20  Score=137.71  Aligned_cols=105  Identities=31%  Similarity=0.501  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhch
Q psy14146         29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQ  108 (133)
Q Consensus        29 ~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  108 (133)
                      ........++.+++++|++||+++++++.++|++|+|.++++.|||++|++.++...|..+.....+.|..+...|++..
T Consensus       180 ~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  259 (514)
T 3sn6_R          180 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT  259 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHH
Confidence            34556678899999999999999999999999999999999999999999999888999888888889999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        109 FVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       109 ~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ++..++..+|++++++||+|||+||
T Consensus       260 ~l~~~~~~~S~~~l~~isidRy~aI  284 (514)
T 3sn6_R          260 SIDVLCVTASIETLCVIAVDRYFAI  284 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999985

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=97.72  E-value=8.6e-06  Score=38.24  Aligned_cols=17  Identities=35%  Similarity=0.508  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHhhcC
Q psy14146        117 ASVFTLMAISVDSTYQY  133 (133)
Q Consensus       117 ~s~~~l~~isidRy~av  133 (133)
                      +|++++++||+|||+||
T Consensus         2 ~Si~~L~~is~dRy~aI   18 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSI   18 (32)
T ss_dssp             HHHHHHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            68899999999999985

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.31  E-value=1.3e-05  Score=43.82  Aligned_cols=31  Identities=26%  Similarity=0.565  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Q psy14146         33 MWTSLYAPMVVVATGGNLIVIWIVLAHKRMR   63 (133)
Q Consensus        33 ~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~   63 (133)
                      ....+|.+++++|++||.++++++.++|.-+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            6678899999999999999999998877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-11

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 23/111 (20%), Positives = 52/111 (46%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
             +    W+  M  +    ++++    N + +++ + HK++RT  NY L+NL++AD  + 
Sbjct: 28  QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ 132
               T      L   + FG   C +  F A L    ++++L+ ++++    
Sbjct: 88  FGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.82

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=1.3e-19  Score=128.17  Aligned_cols=108  Identities=21%  Similarity=0.380  Sum_probs=99.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccch
Q psy14146         26 QPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK  105 (133)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~  105 (133)
                      .+++.......++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.....+.|..+...|+
T Consensus        32 ~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~  111 (348)
T d1u19a_          32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN  111 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhh
Confidence            34556667788899999999999999999999999999999999999999999999988998888888888888899999


Q ss_pred             hchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146        106 VTQFVAVLSICASVFTLMAISVDSTYQY  133 (133)
Q Consensus       106 ~~~~~~~~~~~~s~~~l~~isidRy~av  133 (133)
                      ...+....+..++.++++++++|||++|
T Consensus       112 ~~~~~~~~~~~~s~~~l~~is~~R~~~i  139 (348)
T d1u19a_         112 LEGFFATLGGEIALWSLVVLAIERYVVV  139 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccceeeecchhhhhhcccceee
Confidence            9999999999999999999999999874