Psyllid ID: psy1415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
Protein Sequence
MNHDGPDVQSLEKVSGHTVLGLGLAGLVFVATVCLATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEHHHHHHEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEcccccccccccccccEEEEEEcccccccEEEEEEcccccccccEEEEccccccccccccEEEEEEEEcccccccccccEEEEEEEEcccccccccccEEEccccccccccEEEEEEEEcccccccccEEEEEEEccccccccccccEEEccccccccccccccccEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEEEEccEEEEEccccccccccccccccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccccccccccHccccccccccccccccccccccccccEEccccccHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEccccccccccccccEEEEEEEEcccccEEccccccccccEEEEEEEEEcccHHHHcEEEEEEEEEEcccccccccEEEEEEEcccccccccccccccEEEcccHHHccccEEEEEEEcccccccccccEEEEEEcccccccccccHHHHHccccccccccccccEEEEEEEEccccccEEEEEEEEcccHccccccccccEEEEEEEccccccccEEccccccccccEEEEEEEEcccHHHHcccEEEEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHcccccHHHHcccc
Coil and Loop (DISEMBL)
mnhdgpdvqslekVSGHTVLGLGLAGLVFVATVCLATcycrrrsspleAKKLALSQMtlkrptavrspaaagpnshylkkspsptyatpvaNQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCycrrrtsplEAKKLALSQMtlkrptavrspaaagpnshylkkspsptyatpvaslvnsptgstnsnngagsnshspiqpcvalpgtvvitenekaaplvlgvagpttagngpaangtdsddscalvnketvdcdgnaegklgQIFFKIKYQEKENVLVVTVIKCRDlfikdtpsgssdpyvkvhllpdkqkvkTRVLrktrnpiyneeftftgitphqlkgstlHFVVFSfdrysrddigsTLHFVVFSfdrysrddiVGEVFYSLQSFETYGSTLHFVVFSfdrysrddiVGEVFYSLQsfetyghslsfcrdiqprnlriksqgRGEILLSLCWQPAANRFTIVVLKarnlpkmdvtgladpYVKVYLLYKGQRVAKKKTHvkkrtlnpvynesfvfevpadnldsVSLELLLLDWDRVTKNEVigrldlggdkssgtalthwtdvcnsprRQIAEWLTYR
Flexible Loop (DISEMBL)
MNHDGPDVQSLEKVSGHTVLGLGLAGLVFVATVCLATCYcrrrsspleaKKLALSQMtlkrptavrspaaagpnshylkkspsptyATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKEtvdcdgnaeGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIkdtpsgssdpyvkvhllpdkqkvktrvlrktrnpiyneeftftgitphqlkGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVlkarnlpkmdvtgladpYVKVYLLYKgqrvakkkthvkkrtlnpvynesFVFEVPADNLDSVSLELLLLDWDRVTKNEVIgrldlggdkssgtalthwtdvcnsprrqiaewltyr
Low Complexity Region (SEG)
MNHDGPDVQSLEKVSghtvlglglaglvfvatvCLATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKeaearaefaeKTVKKLQKEVDRLEVSGHtvlglglaglvfaatvCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVnsptgstnsnngagsnshspIQPCVALPGTVVITENEKAAPLVLGVagpttagngpaangtDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAdnldsvslelllldwdRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR
Disordered region (IsUnstruct)
**************SGHTVLGLGLAGLVFVATVCLATCYCRR**************************************************************LAV***************V*KLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRT************************************************************************PCVALPGTVVITENEKAAPLVLG***********************LVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDT******PYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLT**
Disordered Region (DISOPRED)
************KVSGHTVLGLGLAGLVFVATVCLATCYCR**********************************************************************************************SGHTVLGLGLAGLVFAATVCLATC*********************************************************************************************************************************************GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY**************************LSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG****KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR
Disordered Region (DISEMBL)
***********EKVSGHTVLGLGLAGLVFVATVCLATCYCRRRSSPLEAKKLALSQMTLKRP***************LKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRP***************LKKSPSPTYATPVASLVN******************PIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGN*********DDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR
Disordered Region (DISPRO)
*****PDVQSLEKVSGHTVLGLGLAGLVFVATVCLATCYCRRRSS*********************************************************KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTS***********************************************************************************************************************************GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW*TY*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHDGPDVQSLEKVSGHTVLGLGLAGLVFVATVCLATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	622	2.2.26 [Sep-21-2011]
Q9R0N3	430	Synaptotagmin-11 OS=Mus m	yes	N/A	0.427	0.618	0.426	6e-67
Q9BT88	431	Synaptotagmin-11 OS=Homo	yes	N/A	0.427	0.617	0.420	8e-67
O08835	430	Synaptotagmin-11 OS=Rattu	yes	N/A	0.427	0.618	0.420	2e-66
Q9H2B2	425	Synaptotagmin-4 OS=Homo s	no	N/A	0.427	0.625	0.423	4e-65
P50232	425	Synaptotagmin-4 OS=Rattus	no	N/A	0.427	0.625	0.414	1e-63
P40749	425	Synaptotagmin-4 OS=Mus mu	no	N/A	0.427	0.625	0.411	1e-63
Q5R4J5	419	Synaptotagmin-1 OS=Pongo	no	N/A	0.427	0.634	0.376	1e-53
O43581	403	Synaptotagmin-7 OS=Homo s	no	N/A	0.432	0.667	0.360	1e-51
P21521	474	Synaptotagmin 1 OS=Drosop	no	N/A	0.442	0.580	0.383	4e-50
P24507	537	Synaptotagmin-C OS=Diplob	N/A	N/A	0.445	0.515	0.352	1e-49

>sp|Q9R0N3|SYT11_MOUSE Synaptotagmin-11 OS=Mus musculus GN=Syt11 PE=2 SV=2

 Score =  255 bits (652), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/321 (42%), Positives = 189/321 (58%), Gaps = 55/321 (17%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRK 358
           LG + F + Y   +  LVVT+ +   L + D  +  SDPY+K+ +LPDK+ +VKTRVLRK
Sbjct: 157 LGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRK 216

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIV 418
           T +P+++E FTF GI   QL+   LHF+V SFDR+SRDD+                    
Sbjct: 217 TLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDV-------------------- 256

Query: 419 GEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRN 478
                                           +GEV   L   +     +   RDI  RN
Sbjct: 257 --------------------------------IGEVMVPLAGVDPSTGKVQLTRDIIKRN 284

Query: 479 LRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLA-DPYVKVYLLYKGQRVA 537
           ++ K   RGE+ +SL +QP A R T+VVLKAR+LPKMD+TGL+ +PYVKV + Y  +R+A
Sbjct: 285 IQ-KCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIA 343

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK TLNPV+NESF++++P D L  +S+E L++D+DR TKNEV+GRL LG    +
Sbjct: 344 KKKTHVKKCTLNPVFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVT 403

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
            +   HW +VC SPR+ IA+W
Sbjct: 404 TSGAEHWREVCESPRKPIAKW 424

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.
Mus musculus (taxid: 10090)

>sp|Q9BT88|SYT11_HUMAN Synaptotagmin-11 OS=Homo sapiens GN=SYT11 PE=1 SV=2

 Score =  255 bits (651), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 135/321 (42%), Positives = 189/321 (58%), Gaps = 55/321 (17%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRK 358
           LG + F + Y   +  LVVT+ +   L + D  +  SDPY+K+ +LPDK+ +VKTRVLRK
Sbjct: 158 LGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRK 217

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIV 418
           T +P+++E FTF GI   QL+   LHF+V SFDR+SRDD+                    
Sbjct: 218 TLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDV-------------------- 257

Query: 419 GEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRN 478
                                           +GEV   L   +     +   RDI  RN
Sbjct: 258 --------------------------------IGEVMVPLAGVDPSTGKVQLTRDIIKRN 285

Query: 479 LRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLA-DPYVKVYLLYKGQRVA 537
           ++ K   RGE+ +SL +QP A R T+VVLKAR+LPKMD+TGL+ +PYVKV + Y  +R+A
Sbjct: 286 IQ-KCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIA 344

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK TLNP++NESF++++P D L  +S+E L++D+DR TKNEV+GRL LG    +
Sbjct: 345 KKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVT 404

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
            +   HW +VC SPR+ +A+W
Sbjct: 405 ASGAEHWREVCESPRKPVAKW 425

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Homo sapiens (taxid: 9606)

>sp|O08835|SYT11_RAT Synaptotagmin-11 OS=Rattus norvegicus GN=Syt11 PE=2 SV=2

 Score =  254 bits (649), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/321 (42%), Positives = 189/321 (58%), Gaps = 55/321 (17%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRK 358
           LG + F + Y   +  LVVT+ +   L + D  +  SDPY+K+ +LPDK+ +VKTRVLRK
Sbjct: 157 LGSLTFSVDYNFPKKALVVTIQEAHGLPVMDGQTQGSDPYIKMTILPDKRHRVKTRVLRK 216

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIV 418
           T +P+++E FTF GI   QL+   LHF+V SFDR+SRDD+                    
Sbjct: 217 TLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDV-------------------- 256

Query: 419 GEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRN 478
                                           +GEV   L   +     +   RDI  RN
Sbjct: 257 --------------------------------IGEVMVPLAGVDPSTGKVQLTRDIIKRN 284

Query: 479 LRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLA-DPYVKVYLLYKGQRVA 537
           ++ K   RGE+ +SL +QP A R T+VVLKAR+LPKMD+TGL+ +PYVKV + Y  +R+A
Sbjct: 285 IQ-KCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIA 343

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK TLNP++NESF++++P D L  +S+E L++D+DR TKNEV+GRL LG    +
Sbjct: 344 KKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVT 403

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
            +   HW +VC SPR+ +A+W
Sbjct: 404 TSGAEHWREVCESPRKPVAKW 424

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9H2B2|SYT4_HUMAN Synaptotagmin-4 OS=Homo sapiens GN=SYT4 PE=1 SV=1

 Score =  249 bits (636), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 55/321 (17%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLR 357
           KLG +FF ++Y  +    VV + + R L   D  S +SDPY+K+ +LP+K+ KVKTRVLR
Sbjct: 153 KLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 212

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KT +P ++E FT                                                
Sbjct: 213 KTLDPAFDETFT------------------------------------------------ 224

Query: 418 VGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPR 477
               FY +   +     LHF + SFDR+SRDDI+GEV   L   E     +   R+I  R
Sbjct: 225 ----FYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIKR 280

Query: 478 NLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 537
           N+R KS GRGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++
Sbjct: 281 NVR-KSSGRGELLISLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 339

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK T N V+NE FVF++P + L+ +S+E L+LD +R ++NEVIG+L LG   + 
Sbjct: 340 KKKTHVKKCTPNAVFNELFVFDIPCEGLEDISVEFLVLDSERGSRNEVIGQLVLGA-AAE 398

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
           GT   HW ++C+ PRRQIA+W
Sbjct: 399 GTGGEHWKEICDYPRRQIAKW 419

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Homo sapiens (taxid: 9606)

>sp|P50232|SYT4_RAT Synaptotagmin-4 OS=Rattus norvegicus GN=Syt4 PE=1 SV=1

 Score =  244 bits (624), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/321 (41%), Positives = 188/321 (58%), Gaps = 55/321 (17%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLR 357
           KLG +F  ++Y  ++   VV + + + L   D  S +SDPY+K+ +LP+K+ KVKTRVLR
Sbjct: 153 KLGTLFLSLEYNFEKKAFVVNIKEAQGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 212

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KT +P+++E FT                                                
Sbjct: 213 KTLDPVFDETFT------------------------------------------------ 224

Query: 418 VGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPR 477
               FY +        +LHF V SFDR+SRDD++GEV   L   E     +   R+I  R
Sbjct: 225 ----FYGVPYPHIQELSLHFTVLSFDRFSRDDVIGEVLVPLSGIELSDGKMLMTREIIKR 280

Query: 478 NLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 537
           N + KS GRGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++
Sbjct: 281 NAK-KSSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 339

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG   + 
Sbjct: 340 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAE 398

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
           G+   HW ++C+ PRRQIA+W
Sbjct: 399 GSGGGHWKEICDFPRRQIAKW 419

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Rattus norvegicus (taxid: 10116)

>sp|P40749|SYT4_MOUSE Synaptotagmin-4 OS=Mus musculus GN=Syt4 PE=2 SV=2

 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/321 (41%), Positives = 188/321 (58%), Gaps = 55/321 (17%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLR 357
           KLG +F  ++Y  ++   VV + + + L   D  S +SDPY+K+ +LP+K+ +VKTRVLR
Sbjct: 153 KLGTLFLSLEYNFEKKAFVVNIKEAQGLPAMDEQSMTSDPYIKMTILPEKKHRVKTRVLR 212

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KT +P+++E FT                                                
Sbjct: 213 KTLDPVFDETFT------------------------------------------------ 224

Query: 418 VGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPR 477
               FY +        +LHF V SFDR+SRDD++GEV   L   E     +   R+I  R
Sbjct: 225 ----FYGIPYPHIQELSLHFTVLSFDRFSRDDVIGEVLIPLSGIELSDGKMLMTREIIKR 280

Query: 478 NLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 537
           N + KS GRGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++
Sbjct: 281 NAK-KSSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 339

Query: 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597
           KKKTHVKK T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG   + 
Sbjct: 340 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAE 398

Query: 598 GTALTHWTDVCNSPRRQIAEW 618
           G+   HW ++C+ PRRQIA+W
Sbjct: 399 GSGGGHWKEICDFPRRQIAKW 419

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Mus musculus (taxid: 10090)

>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 185/324 (57%), Gaps = 58/324 (17%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLRK 358
           LG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V RK
Sbjct: 140 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHRK 198

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIV 418
           T NP++NE+FTF                                                
Sbjct: 199 TLNPVFNEQFTF------------------------------------------------ 210

Query: 419 GEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRN 478
            +V YS    E  G TL   V+ FDR+S+ DI+GE    + + + +GH     RD+Q   
Sbjct: 211 -KVPYS----ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD-FGHVTEEWRDLQSAE 264

Query: 479 LRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK 538
            + + +  G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ K
Sbjct: 265 -KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 323

Query: 539 KKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG 598
           K+T +KK TLNP YNESF FEVP + +  V + + +LD+D++ KN+ IG++ +G + S+G
Sbjct: 324 KETTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STG 382

Query: 599 TALTHWTDVCNSPRRQIAEWLTYR 622
             L HW+D+  +PRR IA+W T +
Sbjct: 383 AELRHWSDMLANPRRPIAQWHTLQ 406

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Pongo abelii (taxid: 9601)

>sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 184/327 (56%), Gaps = 58/327 (17%)

Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KV 351
           +G +   LG+I F + Y  +E+ L V ++K ++L  KD  SG+SDP+VK++LLPDK+ K+
Sbjct: 129 EGCSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDF-SGTSDPFVKIYLLPDKKHKL 187

Query: 352 KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDR 411
           +T+V RK  NP +NE F F G                                  F +++
Sbjct: 188 ETKVKRKNLNPHWNETFLFEG----------------------------------FPYEK 213

Query: 412 YSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFC 471
                +V  + Y LQ            V  +DR+SR+D +GEV   L   +      +F 
Sbjct: 214 -----VVQRILY-LQ------------VLDYDRFSRNDPIGEVSIPLNKVD-LTQMQTFW 254

Query: 472 RDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY 531
           +D++P      S  RGE+LLSLC+ P+AN   + ++KARNL  MD+ G +DPYVKV+L+Y
Sbjct: 255 KDLKP--CSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMY 312

Query: 532 KGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           K +RV KKKT   KR LNP++NESF F++P + L   ++ + ++D D++++N+VIG++ L
Sbjct: 313 KDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 372

Query: 592 GGDKSSGTALTHWTDVCNSPRRQIAEW 618
              KS    + HW D+   PR+ +A+W
Sbjct: 373 SW-KSGPGEVKHWKDMIARPRQPVAQW 398

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Homo sapiens (taxid: 9606)

>sp|P21521|SY65_DROME Synaptotagmin 1 OS=Drosophila melanogaster GN=Syt1 PE=1 SV=2

 Score =  199 bits (507), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 180/331 (54%), Gaps = 56/331 (16%)

Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-V 351
           D  +E KLG++ FK++Y    N L VTVI+  +L   D   G+SDPYVKV+LLPDK+K  
Sbjct: 186 DKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALDM-GGTSDPYVKVYLLPDKKKKF 244

Query: 352 KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDR 411
           +T+V RKT +P++NE FT                                          
Sbjct: 245 ETKVHRKTLSPVFNETFT------------------------------------------ 262

Query: 412 YSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFC 471
                     F SL   +    TL F +F FDR+S+ D +GEV   L + +    ++   
Sbjct: 263 ----------FKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTID-LAQTIEEW 311

Query: 472 RDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY 531
           RD+         +  G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK+ ++ 
Sbjct: 312 RDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQ 371

Query: 532 KGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            G+R+ KKKT VKK TLNP YNESF FEVP + +  + L + ++D+DR+  +E IGR  L
Sbjct: 372 NGKRLKKKKTSVKKCTLNPYYNESFSFEVPFEQMQKICLVVTVVDYDRIGTSEPIGRCIL 431

Query: 592 GGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622
           G    +GT L HW+D+  SPRR IA+W T +
Sbjct: 432 GC-MGTGTELRHWSDMLASPRRPIAQWHTLK 461

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Drosophila melanogaster (taxid: 7227)

>sp|P24507|SY63_DIPOM Synaptotagmin-C OS=Diplobatis ommata GN=P65-C PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 181/340 (53%), Gaps = 63/340 (18%)

Query: 284 LVNKETVDCDGNAEGKL--GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVK 341
           L  + ++D +     K+  G+I F ++Y      LVV ++K  DL  KD  +G SDPYVK
Sbjct: 219 LYKQRSIDTEAKKHQKVNCGRINFMLRYTYTTEQLVVKILKALDLPAKDA-NGFSDPYVK 277

Query: 342 VHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGS 400
           ++LLPD K+K +T+V RKT NPI+NE F F  +  ++L+   LHF V+ F          
Sbjct: 278 IYLLPDRKKKFQTKVHRKTLNPIFNETFQF-NVPFNELQNRKLHFSVYDF---------- 326

Query: 401 TLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 460
                    DR+SR D++G+V                                V  +L  
Sbjct: 327 ---------DRFSRHDLIGQV--------------------------------VLDNLLE 345

Query: 461 FETYGHSLSFCRDIQPRNLRIKSQ--GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT 518
           F  +    +  RDI    L   S+    GEI  SLC+ P A R TI ++KA NL  MD+T
Sbjct: 346 FSDFSEDTTIWRDI----LEATSEKADLGEINFSLCYLPTAGRLTITIIKATNLKAMDLT 401

Query: 519 GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578
           G +DPYVK  L+   +R+ K+KT +KK TLNPVYNE+ VF++P +N++ V++ + ++D+D
Sbjct: 402 GFSDPYVKASLICDERRLKKRKTSIKKNTLNPVYNEALVFDIPNENMEHVNVIIAVMDYD 461

Query: 579 RVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
            +  NEVIG   + G+ + G    HW ++  +PR+ I +W
Sbjct: 462 CIGHNEVIGMCRV-GNATDGPGREHWNEMLANPRKPIEQW 500

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
242016312	451	synaptotagmin-4, putative [Pediculus hum	0.673	0.929	0.452	1e-109
91091970	440	PREDICTED: similar to AGAP001800-PA [Tri	0.660	0.934	0.439	1e-105
307168339	445	Synaptotagmin-11 [Camponotus floridanus]	0.675	0.943	0.448	1e-105
195157242	482	GL12434 [Drosophila persimilis] gi|19845	0.678	0.875	0.457	1e-105
225581138	482	GA27501 [Drosophila miranda]	0.678	0.875	0.457	1e-105
195395574	471	GJ10932 [Drosophila virilis] gi|19414312	0.644	0.851	0.432	1e-104
195037755	473	GH18298 [Drosophila grimshawi] gi|193894	0.684	0.900	0.446	1e-104
347966627	473	AGAP001800-PB [Anopheles gambiae str. PE	0.646	0.849	0.430	1e-100
195344195	470	GM10947 [Drosophila sechellia] gi|194133	0.654	0.865	0.433	6e-98
332027389	444	Synaptotagmin-11 [Acromyrmex echinatior]	0.655	0.918	0.415	2e-97

>gi|242016312|ref|XP_002428773.1| synaptotagmin-4, putative [Pediculus humanus corporis] gi|212513458|gb|EEB16035.1| synaptotagmin-4, putative [Pediculus humanus corporis]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/506 (45%), Positives = 295/506 (58%), Gaps = 87/506 (17%)

Query: 135 VSGHTVLGLGLAGLVFAATVCLATCYCRR-RTSPLEAKKL------------ALSQMTLK 181
           +S   ++G+ LA L F   +   TC+C R R +   + KL             L+    +
Sbjct: 6   ISTPALVGICLAALAFFVGIFAVTCFCHRSRYTNYGSNKLFGSKKFKAGAEKPLAFHQHR 65

Query: 182 RPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVA 241
           +PTAV+SPA  G N HYLKKSPSPT      S  ++ +  TN +        SPI     
Sbjct: 66  KPTAVKSPAGTGGNIHYLKKSPSPT-GGKSPSGGSAASSPTNPD------QRSPITDLSP 118

Query: 242 LPGTVVITENEKAAPLVLGVAGPTTA--GNGPAANGTDSDDSCALVNKETVDCDGNAEGK 299
                   EN +   L +  + P          +N   S D      K T      + GK
Sbjct: 119 TAAACAGGENGQKNTLTVTNSAPVCVVENEKQKSNSVQSKDETESNEKNTT-----STGK 173

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKT 359
           LG I FK++Y+ ++N L+V+V+KC+DL  KD+ + SSDPYVK+ LLPDKQ          
Sbjct: 174 LGLIVFKLRYKTEKNALIVSVVKCKDLPAKDSNTDSSDPYVKLQLLPDKQ---------- 223

Query: 360 RNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
                           H++K   L                           R +R+ +  
Sbjct: 224 ----------------HKVKTRVL---------------------------RKTRNPVYD 240

Query: 420 E--VFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY---GHSLSFCRDI 474
           E   FY +   +   +TLHFVV SFDRYSRDDI+GEVF SL + +        L+ CR+I
Sbjct: 241 EDFTFYGISPSQLQATTLHFVVLSFDRYSRDDIIGEVFCSLSNIDVTQFENQQLALCREI 300

Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ 534
           QPR+++I+SQGRGEIL+SLCWQPAANR T+V+LKARNLPKMDVTGLADPYVK+YLL   Q
Sbjct: 301 QPRSIKIRSQGRGEILISLCWQPAANRLTVVILKARNLPKMDVTGLADPYVKMYLLCNNQ 360

Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVP--ADNLDSVSLELLLLDWDRVTKNEVIGRLDLG 592
           R+AKKKTHVKKRTLNPV+NESF+FE+P  A+ LD++SLE LLLDWDRVTKNEVIGRL+LG
Sbjct: 361 RIAKKKTHVKKRTLNPVFNESFIFEIPAGAEKLDNISLEFLLLDWDRVTKNEVIGRLELG 420

Query: 593 GDKSSGTALTHWTDVCNSPRRQIAEW 618
           G+K++GTAL HW +VCNSPRRQIAEW
Sbjct: 421 GEKATGTALHHWNEVCNSPRRQIAEW 446

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091970|ref|XP_968583.1| PREDICTED: similar to AGAP001800-PA [Tribolium castaneum] gi|270001306|gb|EEZ97753.1| synaptotagmin IV [Tribolium castaneum]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/503 (43%), Positives = 290/503 (57%), Gaps = 92/503 (18%)

Query: 135 VSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQ----MTLKRPTAVRSPA 190
           V+  T++GL L G VF   +   TC+C R+     AK+    Q       +RPTAV+SPA
Sbjct: 14  VTSPTIVGLCLGGGVFVLCMAALTCFCYRQRRSHSAKRHGPDQPLAFHAHRRPTAVKSPA 73

Query: 191 AAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITE 250
             G  +HYLKKSPSPT  +     +++P   +                          + 
Sbjct: 74  --GATTHYLKKSPSPTGPSKTPPGMSAPHTPS----------------------PTGSSS 109

Query: 251 NEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCD----GNAEGKLGQIFFK 306
              A PL  GVA      +    +   +++      KE ++ +      +   LGQ+ FK
Sbjct: 110 GSMAGPLESGVANDKVDHSATMKDVYTTENEVHTPTKEEIETNEKNLQQSAAYLGQLVFK 169

Query: 307 IKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNE 366
           ++Y+  +N L+V+V++CRDL  KD   GSSDPYVK+ LLPDKQ                 
Sbjct: 170 LRYKHDKNALIVSVVRCRDLPAKDPNLGSSDPYVKLQLLPDKQ----------------- 212

Query: 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGE--VFYS 424
                    H++K   L                           R +R+ +  E   FY 
Sbjct: 213 ---------HKVKTRVL---------------------------RKTRNPVYDEDFTFYG 236

Query: 425 LQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY---GHSLSFCRDIQPRNLRI 481
           +   +    TLHFVV SFDRYSRDDI+GEVF +L + +        ++ CR+IQPR+L+I
Sbjct: 237 INFNQLPNITLHFVVLSFDRYSRDDIIGEVFCALNTVDVTQIENQQMALCREIQPRSLKI 296

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
           +SQGRGE+L+SLCWQPAANR T+VVLKARNLPKMDVTGLADPYVK+YLLY GQR+AKKKT
Sbjct: 297 RSQGRGELLVSLCWQPAANRLTVVVLKARNLPKMDVTGLADPYVKIYLLYNGQRIAKKKT 356

Query: 542 HVKKRTLNPVYNESFVFEVPA--DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGT 599
           HVKKRTL+PV+NESFVF++PA  + L++VSLE LLLDWDRVTKNEVIGRL++GG K +GT
Sbjct: 357 HVKKRTLSPVFNESFVFDIPAGGEGLENVSLEFLLLDWDRVTKNEVIGRLEMGGAKCTGT 416

Query: 600 ALTHWTDVCNSPRRQIAEWLTYR 622
           AL HW +VCNS RRQIA+W   R
Sbjct: 417 ALHHWNEVCNSARRQIADWHKLR 439

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168339|gb|EFN61539.1| Synaptotagmin-11 [Camponotus floridanus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/511 (44%), Positives = 299/511 (58%), Gaps = 91/511 (17%)

Query: 126 LQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTA 185
           L + V+ +  +    L LG A L+ A  +    C  RR  + L + K    +   ++PTA
Sbjct: 11  LIRPVEPVSTATLVTLCLGAAFLLCAVAMTWWLCRRRREHTKLSSDKSLAFRPPHRKPTA 70

Query: 186 VRSPAAAGPNSHYLKKSPSPT--YATPVAS--LVNSPTGSTNSNNGAGSNS-HSPIQPCV 240
           V+ P   G  SHYLKKSPSPT    +P  S     SPTGS +SN  +   +  S   P  
Sbjct: 71  VKRP---GSPSHYLKKSPSPTGPAKSPPGSGGQTPSPTGSQSSNPASQPRTPQSAGTPVQ 127

Query: 241 ALPGTVVIT-ENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGK 299
             P  V ++ ENE+                          D   L N E V+ + N   +
Sbjct: 128 TPPVEVAVSIENER--------------------------DKAELENNEKVEREKNQTAE 161

Query: 300 -----LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKT 353
                LGQ+ FK++Y+ ++N L VTV+KC+ L  +   + + DPYVK+ LLPDKQ+ VKT
Sbjct: 162 NNKDNLGQLVFKLRYRSEQNALAVTVVKCKGLPARGQQNATCDPYVKLQLLPDKQQHVKT 221

Query: 354 RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS 413
           RVLR TR+P+Y+E+FTF GI+  QL+  +LHF+V SFDR                   YS
Sbjct: 222 RVLRNTRDPVYDEDFTFFGISQSQLQKISLHFIVLSFDR-------------------YS 262

Query: 414 RDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRD 473
           RDDI+GE+  +L S     S L                          +     +S CR 
Sbjct: 263 RDDIIGELTCALSSV----SGLE-------------------------DADNQEISLCRK 293

Query: 474 IQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG 533
           I PR+L+I+SQGRGE+L+SLCWQP  +R T+VVLKAR+LPKMDVTGLADPYVK+YLLY  
Sbjct: 294 ICPRSLKIQSQGRGELLVSLCWQPVNSRLTVVVLKARSLPKMDVTGLADPYVKIYLLYNQ 353

Query: 534 QRVAKKKTHVKKRTLNPVYNESFVFEVP--ADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           QR+AKKKTHVKKRTL+PV+NESFVF++P  AD L++VSLE +LLDWDRVTKNEVIGRL+ 
Sbjct: 354 QRIAKKKTHVKKRTLSPVFNESFVFDIPNGADGLNNVSLEFMLLDWDRVTKNEVIGRLEF 413

Query: 592 GGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622
           GG K  G+A+ HW +VC+SPRRQIAEW   R
Sbjct: 414 GGPKCQGSAVNHWKEVCSSPRRQIAEWHKLR 444

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195157242|ref|XP_002019505.1| GL12434 [Drosophila persimilis] gi|198454860|ref|XP_002137956.1| GA27501 [Drosophila pseudoobscura pseudoobscura] gi|194116096|gb|EDW38139.1| GL12434 [Drosophila persimilis] gi|198132985|gb|EDY68514.1| GA27501 [Drosophila pseudoobscura pseudoobscura]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/516 (45%), Positives = 300/516 (58%), Gaps = 94/516 (18%)

Query: 140 VLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYL 199
           +LGL  A  V ++  C+     R R         +      +RPTAVRSP+   P  HYL
Sbjct: 19  ILGL-TAAAVLSSVACICAKQMRIRNKKQNHHDASFPFQPTRRPTAVRSPSGQPP--HYL 75

Query: 200 KKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVL 259
           KKSPSPT    +  L  SP    +++  A  N     +  V +       + ++A    +
Sbjct: 76  KKSPSPTNGKQMGLL--SPMQDQSTSPTAPPNMKYTEEDEVPM-QQEQQQQQQQAQQHQM 132

Query: 260 GVAGPTTAGNG--------------PAANG--TDSDDSCALVN-KETVDCDGNAEGKLGQ 302
           G       GNG                ANG  T + D  AL N KE V  D    GKLG 
Sbjct: 133 GNKLTVVDGNGMKQSLHNHHHSPVETIANGNVTITLDDHALTNGKELVIAD--QYGKLGT 190

Query: 303 IFFKIKYQEKENVLVVTVIKCRDLFIK-------DTPSG-------SSDPYVKVHLLPDK 348
           I+FK++Y  + N L+V++I+CR L  K       D P+G       ++DPYVK+ LLPDK
Sbjct: 191 IYFKLRYLAERNALMVSIIRCRGLPCKGGSGGTGDIPTGMNGRTQAATDPYVKLQLLPDK 250

Query: 349 Q-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVF 407
           Q KVKTRV+R TRNP+Y+E+FTF G+  + L+  +LHFV+ SFDR               
Sbjct: 251 QHKVKTRVVRNTRNPVYDEDFTFYGLNINDLQNMSLHFVILSFDR--------------- 295

Query: 408 SFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHS 467
               YSRDD++GEV   L S E                   DI  E             +
Sbjct: 296 ----YSRDDVIGEVVCPLSSIEI-----------------GDISKE-------------A 321

Query: 468 LSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKV 527
           LS  ++IQPR+L+I++QGRGE+L+SLCWQPAA R T+V+LKARNLP+MDVTGLADPYVK+
Sbjct: 322 LSISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKI 381

Query: 528 YLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-----DNLDSVSLELLLLDWDRVTK 582
           YLLY GQR+AKKKTHVKKRTL+PV+NESF F++PA      +L+ VSLEL+LLDWDRVTK
Sbjct: 382 YLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGTGASLEGVSLELMLLDWDRVTK 441

Query: 583 NEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           NEVIGRL+LGG  SS TAL HW +VCNSPRRQIAEW
Sbjct: 442 NEVIGRLELGGPTSSSTALNHWNEVCNSPRRQIAEW 477

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225581138|gb|ACN94708.1| GA27501 [Drosophila miranda]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/516 (45%), Positives = 300/516 (58%), Gaps = 94/516 (18%)

Query: 140 VLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYL 199
           +LGL  A  V ++  C+     R R         +      +RPTAVRSP+   P  HYL
Sbjct: 19  ILGL-TAAAVLSSVACICAKQMRIRNKKQNHHDASFPFQPTRRPTAVRSPSGQPP--HYL 75

Query: 200 KKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVL 259
           KKSPSPT    +  L  SP    +++  A  N     +  V +       + ++A    +
Sbjct: 76  KKSPSPTNGKQMGLL--SPMQDQSTSPTAPPNMKYTEEDEVPM-QQEQQQQQQQAQQHQM 132

Query: 260 GVAGPTTAGNG--------------PAANG--TDSDDSCALVN-KETVDCDGNAEGKLGQ 302
           G       GNG                ANG  T + D  AL N KE V  D    GKLG 
Sbjct: 133 GNKLTVVDGNGMKQSLHNHHHSPVETIANGNVTITLDDHALTNGKELVIAD--QYGKLGT 190

Query: 303 IFFKIKYQEKENVLVVTVIKCRDLFIK-------DTPSG-------SSDPYVKVHLLPDK 348
           I+FK++Y  + N L+V++I+CR L  K       D P+G       ++DPYVK+ LLPDK
Sbjct: 191 IYFKLRYLAERNALMVSIIRCRGLPCKGGSGGTGDIPTGINGRTQAATDPYVKLQLLPDK 250

Query: 349 Q-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVF 407
           Q KVKTRV+R TRNP+Y+E+FTF G+  + L+  +LHFV+ SFDR               
Sbjct: 251 QHKVKTRVVRNTRNPVYDEDFTFYGLNINDLQNMSLHFVILSFDR--------------- 295

Query: 408 SFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHS 467
               YSRDD++GEV   L S E                   DI  E             +
Sbjct: 296 ----YSRDDVIGEVVCPLSSIEI-----------------GDISKE-------------A 321

Query: 468 LSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKV 527
           LS  ++IQPR+L+I++QGRGE+L+SLCWQPAA R T+V+LKARNLP+MDVTGLADPYVK+
Sbjct: 322 LSISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKI 381

Query: 528 YLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-----DNLDSVSLELLLLDWDRVTK 582
           YLLY GQR+AKKKTHVKKRTL+PV+NESF F++PA      +L+ VSLEL+LLDWDRVTK
Sbjct: 382 YLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGTGASLEGVSLELMLLDWDRVTK 441

Query: 583 NEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           NEVIGRL+LGG  SS TAL HW +VCNSPRRQIAEW
Sbjct: 442 NEVIGRLELGGPTSSSTALNHWNEVCNSPRRQIAEW 477

Source: Drosophila miranda

Species: Drosophila miranda

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395574|ref|XP_002056411.1| GJ10932 [Drosophila virilis] gi|194143120|gb|EDW59523.1| GJ10932 [Drosophila virilis]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/543 (43%), Positives = 294/543 (54%), Gaps = 142/543 (26%)

Query: 134 EVSGHTVLGLGLAGLVFAATVCLATCYC----RRRTSPLEAKKLALSQMTLKRPTAVRSP 189
           +VS    +   + GL  AA +    C C    R R         +      +RPTAVRSP
Sbjct: 8   DVSMMDTIVPAILGLTAAAVLSTVACICAKQMRIRNKKQNQHDASFPFQPTRRPTAVRSP 67

Query: 190 AAAGPNSHYLKKSPSPT------YATPVASLVNSPTGSTN-------------------- 223
           +   P  HYLKKSPSPT        +P+     SPT   N                    
Sbjct: 68  SGQPP--HYLKKSPSPTGGKQMGLLSPMQDQSTSPTAPPNMKYNEEDEVTQPQLAQQQQQ 125

Query: 224 --------SNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANG 275
                    N    +  HSP++      G V IT +E             T  NG     
Sbjct: 126 NSNKLHVVDNAKHHNQHHSPVETIAN--GNVTITLDE-------------TLSNG----- 165

Query: 276 TDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIK------ 329
                      KE   CD    GKLG I+FK++Y  + N L+V++I+CR L  K      
Sbjct: 166 -----------KELTVCD--QYGKLGTIYFKLRYLAERNALMVSIIRCRGLPCKGGAGGT 212

Query: 330 -DTPSG-------SSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKG 380
            D P+G       ++DPYVK+ LLPDKQ KVKTRV+R TRNP+Y+E+FTF G+  + L+ 
Sbjct: 213 GDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQN 272

Query: 381 STLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVF 440
            +LHFV+ SFDR                   YSRDD++GEV   L S E           
Sbjct: 273 MSLHFVILSFDR-------------------YSRDDVIGEVVCPLSSIEI---------- 303

Query: 441 SFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAAN 500
                   DI  E             +LS  ++IQPR+L+I++QGRGE+L+SLCWQPAA 
Sbjct: 304 -------GDISKE-------------ALSISKEIQPRSLKIRAQGRGELLISLCWQPAAG 343

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
           R T+V+LKARNLP+MDVTGLADPYVK+YLLY GQR+AKKKTHVKKRTL+PV+NESF F++
Sbjct: 344 RLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDI 403

Query: 561 PADN-----LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615
           PA       L+ VSLEL+LLDWDRVTKNEVIGRL+LGG  SS TAL HW +VC+SPRRQI
Sbjct: 404 PAAEGTGATLEGVSLELMLLDWDRVTKNEVIGRLELGGPNSSSTALNHWNEVCSSPRRQI 463

Query: 616 AEW 618
           AEW
Sbjct: 464 AEW 466

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195037755|ref|XP_001990326.1| GH18298 [Drosophila grimshawi] gi|193894522|gb|EDV93388.1| GH18298 [Drosophila grimshawi]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/520 (44%), Positives = 297/520 (57%), Gaps = 94/520 (18%)

Query: 134 EVSGHTVLGLGLAGLVFAATVCLATCYC----RRRTSPLEAKKLALSQMTLKRPTAVRSP 189
           +VS    +   + GL  AA +    C C    R R         +      +RPTAVRSP
Sbjct: 8   DVSMMDTIVPAILGLTAAAVLSTVACICAKQMRIRNKKQNHHDSSFPFQPTRRPTAVRSP 67

Query: 190 AAAGPNSHYLKKSPSPT------YATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALP 243
           +   P  HYLKKSPSPT        +P+     SP    N+      +  SP  P     
Sbjct: 68  SGQPP--HYLKKSPSPTGGKQMSLLSPMQDQTTSPIAPQNTK--YAEDDESP--PQQMAQ 121

Query: 244 GTVVITENEKAAPLVLGVAGPTTAGNGPA---ANG--TDSDDSCALVNKETVDCDGNAEG 298
                  + K    V+  A      + P    ANG  T + D      KE    D    G
Sbjct: 122 QQQHHQSSNKLN--VVDNAKNHNQHHSPVETIANGNVTITLDETLSNGKEMTISD--QYG 177

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIK-------DTPSG-------SSDPYVKVHL 344
           KLG I+FK++Y  + N L+V++I+CR L  K       D P+G       ++DPYVK+ L
Sbjct: 178 KLGTIYFKLRYLSERNALMVSIIRCRGLPCKGGAGGTGDIPTGMNGRTQAATDPYVKLQL 237

Query: 345 LPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLH 403
           LPDKQ KVKTRV+R TRNP+Y+E+FTF G++ + L+  +LHFV+ SFDR           
Sbjct: 238 LPDKQHKVKTRVVRNTRNPVYDEDFTFYGLSINDLQNMSLHFVILSFDR----------- 286

Query: 404 FVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 463
                   YSRDD++GEV   L S E                     +G++         
Sbjct: 287 --------YSRDDVIGEVVCPLTSIE---------------------IGDI--------- 308

Query: 464 YGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADP 523
              +LS  ++IQPR+L+I++QGRGE+L+SLCWQPAA R T+V+LKARNLP+MDVTGLADP
Sbjct: 309 SKEALSISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADP 368

Query: 524 YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-----DNLDSVSLELLLLDWD 578
           YVK+YLLY GQR+AKKKTHVKKRTL+PV+NESF F++PA      +L+ VSLEL+LLDWD
Sbjct: 369 YVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWD 428

Query: 579 RVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           RVTKNEVIGRL+LGG  SS TAL HW +VCNSPRRQIAEW
Sbjct: 429 RVTKNEVIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEW 468

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966627|ref|XP_003435948.1| AGAP001800-PB [Anopheles gambiae str. PEST] gi|333469973|gb|EGK97465.1| AGAP001800-PB [Anopheles gambiae str. PEST]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/527 (43%), Positives = 291/527 (55%), Gaps = 125/527 (23%)

Query: 147 GLVFAATVCLATCYCRRRTSPLEAKKLALSQMTL-----KRPTAVRSPAAAGPNSHYLKK 201
           GL  AA + +  C+C RR    + KK      +L     + P AVRSP+   P   YLKK
Sbjct: 20  GLTAAAILAVTACFCARRFR-RQHKKAGHEASSLPFQPPRPPKAVRSPSGQPP--QYLKK 76

Query: 202 SPSPTYATPVASLV--NSPTGSTNSNNGAGSNSH-----------SPIQPCVALPGTVVI 248
           SPSPT   P+   +   SPT  T +  G  + +            S + P        +I
Sbjct: 77  SPSPTSIKPLPGHLPAQSPTDQTTAAGGTTAATATTTLATTTTTTSIVPPTKYTEENELI 136

Query: 249 TEN---EKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGKLGQIFF 305
            +N   E  +P V  +  P+   NG                      DG   GKLG I F
Sbjct: 137 PKNAQLEPKSPDVSELGDPSACENG----------------------DGTEHGKLGTIVF 174

Query: 306 KIKYQEKENVLVVTVIKCRDLFIKDTPSG-----------------------SSDPYVKV 342
           K+++    + LVV+V++CR L  K+  +                        ++DPYVK+
Sbjct: 175 KLRFLADRSALVVSVVRCRGLPGKNHGTAAAELSTIGGGTMLCNGSANGKQTATDPYVKL 234

Query: 343 HLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGST 401
            LLPDKQ KVKTRVLR TRNP+Y+E+FTF G+T  +L G +LHFVV SFDR         
Sbjct: 235 QLLPDKQHKVKTRVLRNTRNPVYDEDFTFYGLTLSELAGMSLHFVVLSFDR--------- 285

Query: 402 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 461
                     YSRDD++GEV   L   +                            LQ  
Sbjct: 286 ----------YSRDDVIGEVVCPLSGID----------------------------LQQI 307

Query: 462 ETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLA 521
           E     ++  R+IQPR+L+I++QGRGE+L+SLCWQPAA R T+V+LKARNLP+MDVTGLA
Sbjct: 308 EN--QQVALSREIQPRSLKIRAQGRGELLISLCWQPAAARLTVVLLKARNLPRMDVTGLA 365

Query: 522 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP------ADNLDSVSLELLLL 575
           DPYVK+YLLY GQR+AKKKTHVKKRTL+PV+NESF F++P         LD VSLEL+LL
Sbjct: 366 DPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPTTEGAGGATLDGVSLELMLL 425

Query: 576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622
           DWDRVTKNEVIGRL+LGG +S+G+AL HW +VCNSPRRQIA+W   R
Sbjct: 426 DWDRVTKNEVIGRLELGGPRSNGSALNHWKEVCNSPRRQIADWHKLR 472

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195344195|ref|XP_002038674.1| GM10947 [Drosophila sechellia] gi|194133695|gb|EDW55211.1| GM10947 [Drosophila sechellia]

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 223/514 (43%), Positives = 291/514 (56%), Gaps = 107/514 (20%)

Query: 145 LAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTL-----KRPTAVRSPAAAGPNSHYL 199
           + GL  AA +    C C R+   L  KK +    +      +RPTAVRSP+   P  HYL
Sbjct: 19  ILGLTAAAVLSSVACICARQMR-LRNKKQSQHDASFPFQPTRRPTAVRSPSGQPP--HYL 75

Query: 200 KKSPSPT------YATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCV-ALPGTVVITENE 252
           KKSPSPT        +P+     SP GS  S+   G +     +P + A   T+++ +  
Sbjct: 76  KKSPSPTGGKQMGLLSPMQDQSTSPIGSGMSSTARGDD-----RPAMRAAECTMIVVDG- 129

Query: 253 KAAPLVLGVAGPTTAGNGPA---ANGTDS---DDSCALVNKETVDCDGNAEGKLGQIFFK 306
                ++G        + P    ANG+ +   DD      KE    D    GKLG I+FK
Sbjct: 130 -----MVGAHAARQLHHSPVETIANGSVTITLDDHSLTNGKELTVTD--QYGKLGTIYFK 182

Query: 307 IKYQEKENVLVVTVIKCRDLFIK-------DTPSG-------SSDPYVKVHLLPDKQKVK 352
           ++Y  + N L+V++I+CR L  K       D P+G       ++DPYVK+ LLPDKQ   
Sbjct: 183 LRYLAERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQ--- 239

Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412
                                  H++K   +        R +R+ +             Y
Sbjct: 240 -----------------------HKVKTRVV--------RNTRNPV-------------Y 255

Query: 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET---YGHSLS 469
             D      FY L   +    +LHFV+ SFDRYSRDD++GEV   L S E       +LS
Sbjct: 256 DED----FTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALS 311

Query: 470 FCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYL 529
             ++IQPR+L+I++QGRGE+L+SLCWQPAA R T+V+LKARNLP+MDVTGLADPYVK+YL
Sbjct: 312 ISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYL 371

Query: 530 LYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-----DNLDSVSLELLLLDWDRVTKNE 584
           LY GQR+AKKKTHVKKRTL+PV+NESF F++PA      +L+ VSLEL+LLDWDRVTKNE
Sbjct: 372 LYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNE 431

Query: 585 VIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           VIGRL+LGG  SS TAL HW +VCNSPRRQIAEW
Sbjct: 432 VIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEW 465

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027389|gb|EGI67472.1| Synaptotagmin-11 [Acromyrmex echinatior]

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 289/522 (55%), Gaps = 114/522 (21%)

Query: 126 LQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTA 185
           L + V+ +  +    L +G A L+ A  +    C  RR  + L + K    +   ++PTA
Sbjct: 11  LIRPVEPVSTATLVTLCIGAAFLLCAVAMTWWLCRRRREHTKLSSDKSLAFRPPHRKPTA 70

Query: 186 VRSPAAAGPNSHYLKKSPSPT--YATPVAS--LVNSPTGSTNSN--------NGAGSNSH 233
           V+SP   G  SHYLKKSPSPT    +P  S     SPTGS +SN          AG+   
Sbjct: 71  VKSP---GSTSHYLKKSPSPTGPAKSPPGSGGQTPSPTGSQSSNPASQPRTPQSAGTPVQ 127

Query: 234 SPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCD 293
           +P++  V++       ENE+                          D   L N E V+ +
Sbjct: 128 TPVEVAVSI-------ENER--------------------------DKAELENNEKVERE 154

Query: 294 G-----NAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK 348
                 N +  LGQ+ FK++Y+ ++N L VTV+KC+ L  +   + +SDPYVK+ LLPDK
Sbjct: 155 KCQTAENDKDNLGQLVFKLRYRSEQNALAVTVVKCKGLPARGQQNATSDPYVKLQLLPDK 214

Query: 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFS 408
           Q                          H +K   L                         
Sbjct: 215 Q--------------------------HHVKTRVL------------------------- 223

Query: 409 FDRYSRDDIVGE--VFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF----E 462
             R +RD +  E   F+ +   +    +LHF+V SFDRYSRDDI+GE+  +L S     +
Sbjct: 224 --RNTRDPVYDEDFTFFGISQSQLQKISLHFIVLSFDRYSRDDIIGELTCALSSVPGLED 281

Query: 463 TYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLAD 522
                +S CR I PR+L+I+SQGRGE+L+SLCWQP  +R T+VVLKARNLPKMDVTGLAD
Sbjct: 282 ADNQEISLCRKIYPRSLKIQSQGRGELLVSLCWQPVTSRLTVVVLKARNLPKMDVTGLAD 341

Query: 523 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP--ADNLDSVSLELLLLDWDRV 580
           PYVK+YLLY  QR+AKKKTHVKKRTL+PV+NESFVF++P  AD L++VSLE +LLDWDRV
Sbjct: 342 PYVKIYLLYNQQRIAKKKTHVKKRTLSPVFNESFVFDIPNGADGLNNVSLEFMLLDWDRV 401

Query: 581 TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622
           TKNEVIGRL+ GG K  G+A+ HW +VC+SPRRQIA+W   R
Sbjct: 402 TKNEVIGRLEFGGPKCQGSAVNHWKEVCSSPRRQIADWHKLR 443

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
FB|FBgn0028400	474	Syt4 "Synaptotagmin 4" [Drosop	0.466	0.611	0.480	5.9e-74
UNIPROTKB|F1S5A0	362	SYT2 "Uncharacterized protein"	0.300	0.516	0.410	2.5e-59
UNIPROTKB|G5E6N8	417	SYT2 "Uncharacterized protein"	0.300	0.448	0.410	3.2e-59
MGI|MGI:99666	422	Syt2 "synaptotagmin II" [Mus m	0.300	0.443	0.410	8.8e-57
UNIPROTKB|Q8N9I0	419	SYT2 "Synaptotagmin-2" [Homo s	0.300	0.446	0.410	1.4e-56
RGD|3804	422	Syt2 "synaptotagmin II" [Rattu	0.300	0.443	0.410	1.4e-56
UNIPROTKB|P29101	422	Syt2 "Synaptotagmin-2" [Rattus	0.300	0.443	0.410	1.4e-56
UNIPROTKB|F1NJH3	518	F1NJH3 "Uncharacterized protei	0.287	0.345	0.418	1e-55
MGI|MGI:1859545	403	Syt7 "synaptotagmin VII" [Mus	0.289	0.446	0.407	2e-55
UNIPROTKB|F1M262	440	Syt7 "Protein Syt7" [Rattus no	0.289	0.409	0.407	2.6e-55

FB|FBgn0028400 Syt4 "Synaptotagmin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 669 (240.6 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 147/306 (48%), Positives = 187/306 (61%)

Query:   324 RDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTL 383
             ++L + D        Y K+  L ++  +   + R    P      + TG  P  + G T 
Sbjct:   169 KELTVTDQYGKLGTIYFKLRYLAERNALMVSITRCRGLPCKGGS-SGTGDIPTGMNGRTQ 227

Query:   384 HFVVFSFDRYSRDDI-GSTLHFVVFSFDRYSRDDIVGE--VFYSLQSFETYGSTLHFVVF 440
                  + D Y +  +     H V     R +R+ +  E   FY L   +    +LHFV+ 
Sbjct:   228 A----ATDPYVKLQLLPDKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVIL 283

Query:   441 SFDRYSRDDIVGEVFYSLQSFETYGHS---LSFCRDIQPRNLRIKSQGRGEILLSLCWQP 497
             SFDRYSRDD++GEV   L S E    S   LS  ++IQPR+L+I++QGRGE+L+SLCWQP
Sbjct:   284 SFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKEIQPRSLKIRAQGRGELLISLCWQP 343

Query:   498 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFV 557
             AA R T+V+LKARNLP+MDVTGLADPYVK+YLLY GQR+AKKKTHVKKRTL+PV+NESF 
Sbjct:   344 AAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFA 403

Query:   558 FEVPAXXXXXXXXXXXXXXXX-----RVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPR 612
             F++PA                     RVTKNEVIGRL+LGG  SS TAL HW +VCNSPR
Sbjct:   404 FDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNSSSTALNHWNEVCNSPR 463

Query:   613 RQIAEW 618
             RQIAEW
Sbjct:   464 RQIAEW 469

GO:0005886 "plasma membrane" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0005544 "calcium-dependent phospholipid binding" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IMP

GO:0044456 "synapse part" evidence=IDA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IMP

UNIPROTKB|F1S5A0 SYT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 2.5e-59, Sum P(3) = 2.5e-59
 Identities = 78/190 (41%), Positives = 119/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   159 ELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 216

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   217 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 276

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G + ++GT L HW+D+ 
Sbjct:   277 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSN-ATGTELRHWSDML 335

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   336 ANPRRPIAQW 345

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|G5E6N8 SYT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 387 (141.3 bits), Expect = 3.2e-59, Sum P(3) = 3.2e-59
 Identities = 78/190 (41%), Positives = 118/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   214 ELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 271

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   272 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 331

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G   ++GT L HW+D+ 
Sbjct:   332 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSS-ATGTELRHWSDML 390

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   391 ANPRRPIAQW 400

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:99666 Syt2 "synaptotagmin II" [Mus musculus (taxid:10090)]

 Score = 389 (142.0 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 78/190 (41%), Positives = 119/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   219 ELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 276

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   277 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 336

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G + ++GT L HW+D+ 
Sbjct:   337 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSN-ATGTELRHWSDML 395

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   396 ANPRRPIAQW 405

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8N9I0 SYT2 "Synaptotagmin-2" [Homo sapiens (taxid:9606)]

 Score = 388 (141.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 78/190 (41%), Positives = 119/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   216 ELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 273

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   274 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 333

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G + ++GT L HW+D+ 
Sbjct:   334 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSN-ATGTELRHWSDML 392

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   393 ANPRRPIAQW 402

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|3804 Syt2 "synaptotagmin II" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 78/190 (41%), Positives = 119/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   219 ELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 276

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   277 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 336

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G + ++GT L HW+D+ 
Sbjct:   337 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSN-ATGTELRHWSDML 395

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   396 ANPRRPIAQW 405

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA;ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA;ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0019905 "syntaxin binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|P29101 Syt2 "Synaptotagmin-2" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 78/190 (41%), Positives = 119/190 (62%)

Query:   429 ETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGE 488
             E  G TL   ++ FDR+S+ DI+GEV   + + +  G  +   RD+Q    + + +  G+
Sbjct:   219 ELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDL-GQPIEEWRDLQGGE-KEEPEKLGD 276

Query:   489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
             I  SL + P A + T+ +L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT VKK+TL
Sbjct:   277 ICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTL 336

Query:   549 NPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
             NP +NESF FE+P                 ++ KNE IG++ +G + ++GT L HW+D+ 
Sbjct:   337 NPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSN-ATGTELRHWSDML 395

Query:   609 NSPRRQIAEW 618
              +PRR IA+W
Sbjct:   396 ANPRRPIAQW 405

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1NJH3 F1NJH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
 Identities = 77/184 (41%), Positives = 113/184 (61%)

Query:   435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
             L+  V  +DR+SR+D +GEV   L   +     + F +D++P +    S  RGE+LLSLC
Sbjct:   335 LYLQVLDYDRFSRNDPIGEVSIPLNKVDLT--QMQFWKDLKPCS--DGSGSRGELLLSLC 390

Query:   495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
             + P+AN   + ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT V KR LNPV+NE
Sbjct:   391 YNPSANSIVVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVVMKRCLNPVFNE 450

Query:   555 SFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQ 614
             SF F++P                 R+++N+VIG++ L   KS    + HW D+   PR+ 
Sbjct:   451 SFSFDIPTERLRETTIVITVMDKDRLSRNDVIGKIYLSW-KSGPGEVKHWKDMIARPRQA 509

Query:   615 IAEW 618
             +A+W
Sbjct:   510 VAQW 513

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1859545 Syt7 "synaptotagmin VII" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 75/184 (40%), Positives = 113/184 (61%)

Query:   435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
             L+  V  +DR+SR+D +GEV   L   +      +F +D++P +    S  RGE+LLSLC
Sbjct:   219 LYLQVLDYDRFSRNDPIGEVSIPLNKVDLT-QMQTFWKDLKPCS--DGSGSRGELLLSLC 275

Query:   495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
             + P+AN   + ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT  KKR LNP++NE
Sbjct:   276 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 335

Query:   555 SFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQ 614
             SF F++P                 ++++N+VIG++ L   KS    + HW D+   PR+ 
Sbjct:   336 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW-KSGPGEVKHWKDMIARPRQP 394

Query:   615 IAEW 618
             +A+W
Sbjct:   395 VAQW 398

GO:0001778 "plasma membrane repair" evidence=IDA

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005764 "lysosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031045 "dense core granule" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=ISO

UNIPROTKB|F1M262 Syt7 "Protein Syt7" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 75/184 (40%), Positives = 113/184 (61%)

Query:   435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
             L+  V  +DR+SR+D +GEV   L   +      +F +D++P +    S  RGE+LLSLC
Sbjct:   256 LYLQVLDYDRFSRNDPIGEVSIPLNKVDLT-QMQTFWKDLKPCS--DGSGSRGELLLSLC 312

Query:   495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
             + P+AN   + ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT  KKR LNP++NE
Sbjct:   313 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 372

Query:   555 SFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQ 614
             SF F++P                 ++++N+VIG++ L   KS    + HW D+   PR+ 
Sbjct:   373 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW-KSGPGEVKHWKDMIARPRQP 431

Query:   615 IAEW 618
             +A+W
Sbjct:   432 VAQW 435

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	622
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	7e-79
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-59
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-55
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	8e-53
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	7e-48
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-46
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	6e-32
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-30
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-30
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-28
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	5e-28
pfam00168	85	pfam00168, C2, C2 domain	7e-28
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	2e-27
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-27
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	3e-27
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	5e-24
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	7e-24
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	9e-24
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-23
pfam00168	85	pfam00168, C2, C2 domain	2e-23
cd00030	102	cd00030, C2, C2 domain	2e-23
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	2e-23
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	5e-23
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	7e-23
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-22
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-22
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	4e-22
cd00030	102	cd00030, C2, C2 domain	2e-21
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-21
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	6e-21
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	7e-21
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-20
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-20
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-20
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	7e-20
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-19
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	8e-19
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	8e-19
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-18
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-18
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	5e-18
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	5e-18
pfam00261	237	pfam00261, Tropomyosin, Tropomyosin	1e-17
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-17
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-17
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-17
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	6e-17
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	7e-17
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	8e-17
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-16
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	7e-16
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	3e-15
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-15
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	8e-15
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	8e-15
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	1e-14
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-14
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	6e-14
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-13
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	2e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-12
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	5e-12
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-12
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	8e-12
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	9e-12
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	9e-12
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-11
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-11
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	4e-11
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	5e-11
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	6e-11
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-10
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	5e-10
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	5e-10
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	6e-10
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	7e-10
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-09
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-09
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-09
cd08692	135	cd08692, C2B_Tac2-N, C2 domain second repeat found	2e-09
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	4e-09
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	5e-09
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	6e-09
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	8e-09
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	1e-08
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	2e-08
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-08
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	3e-08
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-08
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	3e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-08
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-08
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	6e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	7e-08
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	7e-08
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	1e-07
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-07
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-07
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	2e-07
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	2e-07
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	3e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-07
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-07
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	9e-07
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	2e-06
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-06
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	4e-06
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	7e-06
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	8e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	8e-06
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	9e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	1e-05
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-05
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	3e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	5e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	5e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	5e-05
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-04
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-04
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	2e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-04
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	3e-04
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	4e-04
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	4e-04
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	5e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	6e-04
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	8e-04
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	0.001
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.001
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	0.001
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.001
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	0.002
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	0.002
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.002
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	0.003
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	0.003
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.004

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score =  245 bits (627), Expect = 7e-79
 Identities = 93/133 (69%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+LLSLC+QP  NR T+VVLKAR+LPKMDV+GLADPYVKV L Y  +R++KKKTHVKK
Sbjct: 1   RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
            TLNPV+NESFVF++P++ L+ +S+E L+LD DRVTKNEVIGRL LG  K+SG+   HW 
Sbjct: 61  CTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGP-KASGSGGHHWK 119

Query: 606 DVCNSPRRQIAEW 618
           +VCN PRRQIAEW
Sbjct: 120 EVCNPPRRQIAEW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  194 bits (496), Expect = 2e-59
 Identities = 76/132 (57%), Positives = 97/132 (73%), Gaps = 1/132 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           GE+LLSL + P A R T+VVLKARNLP  D  GL+DPYVKV LL  G+++ KKKT VKK 
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNPV+NE+F F+VPA+ L+ VSL + ++D D V +NEVIG++ LG D S G  L HW +
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD-SGGEELEHWNE 119

Query: 607 VCNSPRRQIAEW 618
           +  SPR+ IA W
Sbjct: 120 MLASPRKPIARW 131

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score =  184 bits (469), Expect = 1e-55
 Identities = 71/133 (53%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+LLSLC+ P ANR T+ ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT +KK
Sbjct: 1   RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           RTLNPV+NESF+F +P + L   +L + ++D DR+++N++IG++ LG  KS G  L HW 
Sbjct: 61  RTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGW-KSGGLELKHWK 119

Query: 606 DVCNSPRRQIAEW 618
           D+ + PR+ +A+W
Sbjct: 120 DMLSKPRQPVAQW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score =  177 bits (450), Expect = 8e-53
 Identities = 71/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT +KKR
Sbjct: 2   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR 61

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNP YNESF FEVP + +  V L + +LD+DR+ KN+ IG++ LG   ++G  L HW+D
Sbjct: 62  TLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGC-NATGAELRHWSD 120

Query: 607 VCNSPRRQIAEWLT 620
           +  SPRR IA+W T
Sbjct: 121 MLASPRRPIAQWHT 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score =  163 bits (415), Expect = 7e-48
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 20/133 (15%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLR 357
           KLG +FF ++Y  ++  L+V +I+CRDL   D  SG+SDPYVK+ LLP+K+ KVKTRVLR
Sbjct: 1   KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KTRNP+Y+E FTF GI  +QL+                     +LHF V SFDRYSRDD+
Sbjct: 61  KTRNPVYDETFTFYGIPYNQLQ-------------------DLSLHFAVLSFDRYSRDDV 101

Query: 418 VGEVFYSLQSFET 430
           +GEV   L   + 
Sbjct: 102 IGEVVCPLAGADL 114

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score =  160 bits (406), Expect = 1e-46
 Identities = 67/132 (50%), Positives = 97/132 (73%), Gaps = 1/132 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           GE++ SLC+ P A R T+ ++KARNL  MD+TG +DPYVKV L+ +G+R+ KKKT VKK 
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNP YNE+ VF+VP +N+D+VSL + ++D+DRV  NE+IG   +G + + G    HW +
Sbjct: 61  TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN-ADGQGREHWNE 119

Query: 607 VCNSPRRQIAEW 618
           +  +PR+ IA+W
Sbjct: 120 MLANPRKPIAQW 131

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score =  119 bits (301), Expect = 6e-32
 Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 1/132 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           GEILLSL + P A R T+VV+KARNL   +    ADP+VKVYLL  G++++KKKT VK+ 
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
             NP++NE+ +F VPA  L  +SL + + +     K   +G + + G  +SG  L+HW  
Sbjct: 62  DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHV-IIGPAASGMGLSHWNQ 120

Query: 607 VCNSPRRQIAEW 618
           +  S R+ +A W
Sbjct: 121 MLASLRKPVAMW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  115 bits (290), Expect = 2e-30
 Identities = 48/101 (47%), Positives = 67/101 (66%), Gaps = 3/101 (2%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLR 357
           KLG++ F + Y  + N L V +I+  DL   D   G+SDPYVKV+LLPD K+K +T+V R
Sbjct: 1   KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDM-GGTSDPYVKVYLLPDKKKKFETKVHR 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           KT NP++NE FTF  +   +L   TL F V+ FDR+S+ D+
Sbjct: 60  KTLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDL 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score =  114 bits (287), Expect = 6e-30
 Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 5/108 (4%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG I L +  +   N+ T+ V +A+NL  MD  GL+DPYVK+ L+   +   K+KT   K
Sbjct: 1   RGRIYLKISVK--DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK 58

Query: 546 RTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTKNEVIGRLDLG 592
           +TLNPV+NE+F F++ PAD    +S+E  + DWDR T+N+ +G L  G
Sbjct: 59  KTLNPVWNETFTFDLKPADKDRRLSIE--VWDWDRTTRNDFMGSLSFG 104

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score =  110 bits (277), Expect = 1e-28
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLR 357
            LG+I F + Y  +E+ L + ++K  +L  KD  SG+SDP+VK++LLPD K K++T+V R
Sbjct: 1   NLGRIQFSVSYDFQESTLTLKILKAVELPAKDF-SGTSDPFVKIYLLPDKKHKLETKVKR 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           K  NP +NE F F G    +L+   L+  V  +DR+SR+D IG   
Sbjct: 60  KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVS 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score =  108 bits (272), Expect = 5e-28
 Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKK 545
           GE+LLSL + P+A R  + +++A+ L + D++  +DP+VK+ L++ G ++ K KKT   +
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMR 59

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
            T++P YNESF F+VP + L++VSL   +   +  + N+ IGR+ +G   S  +   HW 
Sbjct: 60  GTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWR 119

Query: 606 DVCNSPRRQIAEW 618
            + NS R  + +W
Sbjct: 120 RMLNSQRTAVEQW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  106 bits (267), Expect = 7e-28
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            + V+ A+NLP  D+ G +DPYVKV L   GQ+   KKT V K TLNPV+NE+F FEV  
Sbjct: 2   RVTVISAKNLPPKDLNGKSDPYVKVSLG--GQKKDTKKTKVVKNTLNPVWNETFTFEVTL 59

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR 588
             L    L + + D+DR  K++ IG 
Sbjct: 60  PELA--ELRIEVYDYDRFGKDDFIGE 83

Length = 85

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score =  107 bits (269), Expect = 2e-27
 Identities = 56/134 (41%), Positives = 86/134 (64%), Gaps = 3/134 (2%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL--ADPYVKVYLLYKGQRVAKKKTHVK 544
           GE+LLS+ + PAANR  +VV+KA+NL    +  L   D  VKV L ++  ++ KK+T   
Sbjct: 2   GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA 61

Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHW 604
           K  +NPV+NE  +FE+P++ L + S+EL +L+ D   ++  +GR  L G  +SGT   HW
Sbjct: 62  KHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSL-GLHTSGTERQHW 120

Query: 605 TDVCNSPRRQIAEW 618
            ++ ++PRRQIA W
Sbjct: 121 EEMLDNPRRQIAMW 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score =  107 bits (268), Expect = 2e-27
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 548
           IL+SL +        + +++  NL  MD  G +DP+VK+YL     + +K KT VKK+TL
Sbjct: 2   ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTL 61

Query: 549 NPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608
           NP +NE F +++   +L   +LE+ + D D    N+ IG L LG + + G  L HW D  
Sbjct: 62  NPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN-AKGERLRHWLDCL 120

Query: 609 NSPRRQIAEWLT 620
            +P ++I  W T
Sbjct: 121 KNPDKKIEAWHT 132

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score =  107 bits (268), Expect = 3e-27
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
            G+I +SL + P  NR T+VVL+AR L ++D       YVKV L+   + V  KKT V  
Sbjct: 1   LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAH-TSVYVKVSLMIHNKVVKTKKTEVVD 59

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDK-SSGTALTHW 604
              +P +NESF F+V +  LD+ SL L ++    V K++++GR+ LG    + G  L HW
Sbjct: 60  GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW 119

Query: 605 TDVCNSPRRQIAEW 618
            D+ + P+  I  W
Sbjct: 120 NDMLSKPKELIKRW 133

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 97.0 bits (242), Expect = 5e-24
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP---DKQKVKTRVL 356
           LG + F + Y    + L  T+I+ + L   D  +G SDPYVK++LLP      K++T+ +
Sbjct: 1   LGTLEFTLLYDPANSALHCTIIRAKGLKAMDA-NGLSDPYVKLNLLPGASKATKLRTKTV 59

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGST 401
            KTRNP +NE  T+ GIT   ++  TL  +V   DR+  D +G T
Sbjct: 60  HKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGET 104

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 96.9 bits (242), Expect = 7e-24
 Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 24/141 (17%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP-----DKQKVKT 353
             G +  K  Y+  E  L V ++  R+L   D  +GSSDP+VKV LLP     D    KT
Sbjct: 1   PYGVLTVKAYYRASEQSLRVEILNARNLLPLD-SNGSSDPFVKVELLPRHLFPDVPTPKT 59

Query: 354 RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS 413
           +V +KT  P+++E F F  + P Q                     G+ L F V  +D   
Sbjct: 60  QVKKKTLFPLFDESFEFN-VPPEQCSVE-----------------GALLLFTVKDYDLLG 101

Query: 414 RDDIVGEVFYSLQSFETYGST 434
            +D  GE F  L        T
Sbjct: 102 SNDFEGEAFLPLNDIPGVEDT 122

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 96.2 bits (240), Expect = 9e-24
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 9/126 (7%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK--THV 543
            G++  SL +   +N+ T+ +++A +LP MD+ G +DPYVKVYLL       KKK  T V
Sbjct: 2   LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD----KKKKFETKV 57

Query: 544 KKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSGTAL 601
            ++TLNPV+NE+F F+VP   L + +L   + D+DR +K+++IG  R+ L      G   
Sbjct: 58  HRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL-LTVDLGHVT 116

Query: 602 THWTDV 607
             W D+
Sbjct: 117 EEWRDL 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 95.6 bits (238), Expect = 1e-23
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
             T+ ++ ARNLP  D  G +DPYVKV L   G    KKKT V K TLNPV+NE+F FEV
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLD--GDPKEKKKTKVVKNTLNPVWNETFEFEV 58

Query: 561 PADNLDSVSLELLLLDWDRVTKNEVIGRL 589
           P   L  + +E  + D DR  +++ IG++
Sbjct: 59  PPPELAELEIE--VYDKDRFGRDDFIGQV 85

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTGIT 374
           L VTVI  ++L  KD  +G SDPYVKV L   K+   KT+V++ T NP++NE FTF    
Sbjct: 1   LRVTVISAKNLPPKD-LNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTL 59

Query: 375 PHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           P     + L   V+ +DR+ +DD IG  
Sbjct: 60  PE---LAELRIEVYDYDRFGKDDFIGEV 84

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
             + V++ARNLP  D+ G +DPYVKV L  K     K KT V K TLNPV+NE+F F V 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK----QKFKTKVVKNTLNPVWNETFEFPVL 56

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGR--LDLGGDKSSGTALTHW 604
             + +S +L + + D DR +K++ +G   + L     SG     W
Sbjct: 57  --DPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKR 546
           E+LL L +     R ++ V+K  N   + +    D YVK+ LL   GQ ++K KT +++ 
Sbjct: 3   ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG 62

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
             +P + E+FVF+V    L  V+L   + +  ++ + E+IG   LG + S      HW +
Sbjct: 63  QPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNE 122

Query: 607 VCNSPRRQIAEWLT 620
           +  S  +Q+  W T
Sbjct: 123 MKESKGQQVCRWHT 136

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 94.2 bits (235), Expect = 5e-23
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G+I F + Y  K   L V + +CR+L   D     S+PYVKV+LLPDK    K KT V +
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
            T NP++NE   +  I+  QL+  TL   V+  DR+ R+ 
Sbjct: 61  NTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNT 99

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 93.9 bits (234), Expect = 7e-23
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 21/126 (16%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVK-TRVLRKT 359
           G+++F ++Y  +E  L V++IK R+L  +       DP+VKV LLPD+++   ++V RKT
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT 60

Query: 360 RNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
           +NP ++E F F                  SF    R     TL   V+  DR+SR  I+G
Sbjct: 61  QNPNFDETFVFQ----------------VSFKELQR----RTLRLSVYDVDRFSRHCIIG 100

Query: 420 EVFYSL 425
            V + L
Sbjct: 101 HVLFPL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 93.1 bits (232), Expect = 1e-22
 Identities = 32/88 (36%), Positives = 51/88 (57%)

Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK 544
             G I L++ +     +  + V K RNLP  D + + DPYV++YLL    +  ++KT VK
Sbjct: 1   PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVK 60

Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLEL 572
           K  LNPV++E+F F V  + L   +L++
Sbjct: 61  KDNLNPVFDETFEFPVSLEELKRRTLDV 88

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 93.9 bits (234), Expect = 2e-22
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 486 RGEILLSL-CWQPAANR-----------FTIVVLKARNLPKMDVTGLADPYVKVYLLYKG 533
           RGE+ ++L    P +               + V +A+NLP +   G +D +VK YLL   
Sbjct: 1   RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60

Query: 534 QRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIG--RLD 590
            + +K+KT V K+++NPV+N +FV++ V  ++L    LEL + D D+++ N+ +G  RL 
Sbjct: 61  SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLG 120

Query: 591 LGGDKSSGTA----------LTHWTDVCNSP 611
           LG  KS G A          +  W  + ++P
Sbjct: 121 LGTGKSYGQAVDWMDSTGEEILLWQKMLDNP 151

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 91.7 bits (228), Expect = 4e-22
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+  SL +        + +++ARNL   D +G ADPY KV LL        K++ + K
Sbjct: 2   RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNT--KQSKIHK 59

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           +TLNP ++ESFVFEVP   L   +LE+LL D+D+ +++E IG ++L
Sbjct: 60  KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 10/111 (9%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L VTVI+ R+L  KD  +G SDPYVKV L   KQK KT+V++ T NP++NE F F  + P
Sbjct: 1   LRVTVIEARNLPAKDL-NGKSDPYVKVSLG-GKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 376 HQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSRDDIVGEVFYSL 425
              +  TL   V+  DR+S+DD +G     V             GE++  L
Sbjct: 59  ---ESDTLTVEVWDKDRFSKDDFLGE----VEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 89.6 bits (223), Expect = 3e-21
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
           G++   + Y      L V V+K R+L   D   G SDPYVKV LL   +K+   KT V +
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGK-GLSDPYVKVSLLQGGKKLKKKKTSVKK 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
            T NP++NE F+F  +   QL+  +L   V   D   R+++
Sbjct: 60  GTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEV 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 5/108 (4%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY-KGQRVAKKKTHVK 544
            G I  S+ +    +  T+ +LKA  LP  D +G +DP+VK+YLL  K     K +T VK
Sbjct: 2   LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKH---KLETKVK 58

Query: 545 KRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           ++ LNP +NE+F+FE  P + L    L L +LD+DR ++N+ IG + L
Sbjct: 59  RKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 88.2 bits (219), Expect = 7e-21
 Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 3/100 (3%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVK-TRVLRK 358
            G++ F ++Y +   +L V +I+ R+L  +D  SG++DPY KV LLPD+   K +++ +K
Sbjct: 2   RGELHFSLEYDKDMGILNVKLIQARNLQPRDF-SGTADPYCKVRLLPDRSNTKQSKIHKK 60

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           T NP ++E F F  + P +L   TL  +++ FD++SRD+ 
Sbjct: 61  TLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDEC 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLL-PDK--QKVKTRVL 356
            G++   + Y    N + V +IK R+L   D  +G+SDPYVKV L+  DK  +K KT + 
Sbjct: 1   RGELLLSLCYNPTANRITVNIIKARNLKAMDI-NGTSDPYVKVWLMYKDKRVEKKKTVIK 59

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IG 399
           ++T NP++NE F F  I   +L+ +TL   V   DR SR+D IG
Sbjct: 60  KRTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 15/113 (13%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
           G+I+ KI    K+N L V V + ++L   D P+G SDPYVK+ L+PD   + K KT+ ++
Sbjct: 2   GRIYLKISV--KDNKLTVEVREAKNLIPMD-PNGLSDPYVKLKLIPDPKNETKQKTKTIK 58

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSF 409
           KT NP++NE FTF  + P   K   L   V+ +DR +R+D +GS       SF
Sbjct: 59  KTLNPVWNETFTFD-LKP-ADKDRRLSIEVWDWDRTTRNDFMGS------LSF 103

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 86.4 bits (214), Expect = 2e-20
 Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGI 373
            L V +I  R+L  KD   G SDPYVKV L  D K+K KT+V++ T NP++NE F F   
Sbjct: 1   TLTVKIISARNLPPKD-KGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVP 59

Query: 374 TPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
            P   + + L   V+  DR+ RDD IG  
Sbjct: 60  PP---ELAELEIEVYDKDRFGRDDFIGQV 85

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 85.4 bits (212), Expect = 7e-20
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKK 545
           G +  S+ +     + T+ ++KARNLP         DP+VKV LL   +R    ++ VK+
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRS--LQSKVKR 58

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGR 588
           +T NP ++E+FVF+V    L   +L L + D DR +++ +IG 
Sbjct: 59  KTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGH 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 8/92 (8%)

Query: 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
            T+ V+ A NLP  D  G +DP+VK YL   G++V K  T   K+TLNPV+NESF   VP
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYL--NGEKVFK--TKTIKKTLNPVWNESFEVPVP 56

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGR--LDL 591
           +     + +E  + DWDR  K++++G   +DL
Sbjct: 57  SRVRAVLKVE--VYDWDRGGKDDLLGSAYIDL 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 82.7 bits (205), Expect = 8e-19
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 494 CWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL--YKGQRVAKKKTHVKKRTLNPV 551
            ++ +     + +L ARNL  +D  G +DP+VKV LL  +    V   KT VKK+TL P+
Sbjct: 10  YYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL 69

Query: 552 YNESFVFEVPAD--NLDSVSLELLLLDWDRVTKNEVIG 587
           ++ESF F VP +  +++   L   + D+D +  N+  G
Sbjct: 70  FDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEG 107

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 82.3 bits (204), Expect = 8e-19
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G I + L +    ++  + VL+AR+LP  D   L +PYVKVYLL      +K++T   K+
Sbjct: 3   GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK 62

Query: 547 TLNPVYNESFVF-EVPADNLDSVSLELLLLDWDRVTKNEVIG 587
           TLNP +N++F +  V  + L   +LE+ + D+DR  +N+ +G
Sbjct: 63  TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLG 104

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVL 356
           LG+I   I+Y  +   L+VTV KCR+L   D  S   DPYV+++LLPDK K    KT V 
Sbjct: 2   LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCD-SSDIPDPYVRLYLLPDKSKSTRRKTSVK 60

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVV 387
           +   NP+++E F F  ++  +LK  TL   V
Sbjct: 61  KDNLNPVFDETFEFP-VSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
           G+I  ++ Y +  + L+VTV++ RDL  +D      +PYVKV+LLPD   K K +T+ ++
Sbjct: 3   GRIQIQLWYDKVTSQLIVTVLQARDLPPRDD-GSLRNPYVKVYLLPDRSEKSKRRTKTVK 61

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           KT NP +N+ F ++ +    LK  TL   V+ +DR   +D 
Sbjct: 62  KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDF 102

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 80.5 bits (199), Expect = 5e-18
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLRK 358
           +I   + Y  +   L+V +I+C +L   D  +G SDP+VK++L PD  K    KT+V +K
Sbjct: 1   KILVSLMYNTQRRGLIVGIIRCVNLAAMDA-NGYSDPFVKLYLKPDAGKKSKHKTQVKKK 59

Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGS 400
           T NP +NEEF +  I    L   TL   V+  D    +D IG 
Sbjct: 60  TLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGG 101

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 80.2 bits (198), Expect = 5e-18
 Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G+I F + Y  K   L V V +CR+L   D     S+PYVK +LLPDK    K KT + R
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
            T NP+YNE   ++ I+  QL+  TL   V+ +DR+ R+   + L  V    D ++ D  
Sbjct: 62  NTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRN---TFLGEVEIPLDSWNFDSQ 117

Query: 418 VGEVF 422
             E  
Sbjct: 118 HEECL 122

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 28/44 (63%), Positives = 37/44 (84%)

Query: 91  ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
           A+QR + Y+ +I+ L  KLKEAE RAEFAE++V+KL+KEVDRLE
Sbjct: 167 ASQREDSYEEKIRDLTEKLKEAETRAEFAERSVQKLEKEVDRLE 210

Length = 237

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
            G +  +L + PA +     +++A+ L  MD  GL+DPYVK+ LL    +  K +T    
Sbjct: 1   LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH 60

Query: 546 RTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIG 587
           +T NP +NE+  +  +  +++   +L LL+LD DR   N+ +G
Sbjct: 61  KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKK 545
           GEI  SL +        + + + RNL   D     ++PYVKVYLL    + +K+KT VKK
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            T NPV+NE+  + +    L++ +L+L +   DR  +N  +G +++
Sbjct: 61  NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEI 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G + F + Y  K   L V VI+C+DL   D     SDPYVK +LLPDK    K KT V +
Sbjct: 2   GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
           KT NP++NE   +  +   +L    L+  V+  D   R+
Sbjct: 62  KTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRN 99

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 77.1 bits (190), Expect = 6e-17
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVK 544
           +G +  +L + P      + V++ ++L   D     +DPYVK YLL       K+KT VK
Sbjct: 1   QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVK 60

Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           K+TLNPV+NE+  ++V  + L +  L L +   D + +N  +G +++
Sbjct: 61  KKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEV 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 76.9 bits (190), Expect = 7e-17
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLA-DPYVKVYLLYKGQRVAKKKTHVKK 545
           G++ LS+ ++       ++V+ A+NLP +D  G   DPYVK YLL   Q+  K+KT V +
Sbjct: 2   GQVKLSISYK--NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57

Query: 546 RTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL-GGDKSSGTALTH 603
           +T NP +NE  V++ +P ++L    L++ +   D + +NE +G + +             
Sbjct: 58  KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117

Query: 604 W 604
           W
Sbjct: 118 W 118

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
           GQ+   I Y  K   L V V+  ++L + D      DPYVK +LLPD QK    KT+V+R
Sbjct: 2   GQVKLSISY--KNGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393
           KTRNP +NE   + G+    L+   L   V+S D  
Sbjct: 58  KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVL 356
           LG I F ++Y      L V +++ ++L   D   G SDPYVK+HL+ + +++   KT + 
Sbjct: 1   LGDICFSLRYVPTAGKLTVVILEAKNLKKMDV-GGLSDPYVKIHLMQNGKRLKKKKTTIK 59

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IG 399
           ++T NP YNE F+F  +   Q++   L   V  +DR  ++D IG
Sbjct: 60  KRTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 73.5 bits (181), Expect = 7e-16
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 503 TIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN-ESFVFEV 560
            + V+ AR+LP MD  + L D +V+V     G    K  T V K++LNPV+N E F FEV
Sbjct: 2   KVRVVAARDLPVMDRSSDLTDAFVEVKF---GSTTYK--TDVVKKSLNPVWNSEWFRFEV 56

Query: 561 PADNLDSVSLELLLLDWDRVTKNEVIGR--LDLGG--DKSSGTALTHW 604
             + L    L++ ++D D  + N+ IG+  +DL     K S + ++ W
Sbjct: 57  DDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGW 104

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 4/105 (3%)

Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHV 543
             G +  SL +        + +++ R+LP MD  +G +DPYVK+ LL + +   K KT V
Sbjct: 1   KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEH--KVKTRV 58

Query: 544 KKRTLNPVYNESFVF-EVPADNLDSVSLELLLLDWDRVTKNEVIG 587
            ++T NPVY+E+F F  +P + L  +SL   +L +DR ++++VIG
Sbjct: 59  LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIG 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 9/85 (10%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE--VPAD 563
           V++ARNL   D  G +DPY+K+ L    +++  +  ++   TLNPV+ + F  E  +P +
Sbjct: 6   VVRARNLQPKDPNGKSDPYLKIKLG--KKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62

Query: 564 NLDSVSLELLLLDWDRVTKNEVIGR 588
           ++  +S    ++D+D +  +++IG 
Sbjct: 63  SILKIS----VMDYDLLGSDDLIGE 83

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
           G++   + YQ   N L V V+K R L   D  SG +DPYVKV+L   K+++   KT V +
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDV-SGLADPYVKVNLYYGKKRISKKKTHVKK 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
            T NP++NE F F  I   +L+  ++ F+V   DR +++++
Sbjct: 61  CTLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEV 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 27/114 (23%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           +L V V++  +L ++D    SSDPYV + L    QKVKTRV++K  NP++NEE T +   
Sbjct: 3   LLKVRVVRGTNLAVRDF--TSSDPYVVLTL--GNQKVKTRVIKKNLNPVWNEELTLSVPN 58

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
           P                          L   VF  D +S+DD +GE    L+  
Sbjct: 59  PMAP-----------------------LKLEVFDKDTFSKDDSMGEAEIDLEPL 89

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 16/112 (14%)

Query: 301 GQIFFKIKY--QEKEN----------VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK 348
           G++   +KY   E E            L V V + ++L       G+SD +VK +LLPDK
Sbjct: 2   GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALK-SGGTSDSFVKCYLLPDK 60

Query: 349 QKV---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
            K    KT V++K+ NP++N  F + G++P  L  + L   V+  D+ S +D
Sbjct: 61  SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSND 112

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           GEIL SL +        + V + RNL   D     ++PYVK YLL    R +K+KT +K+
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            T NPVYNE+  + +    L++ +L+L +  +DR  +N  +G +++
Sbjct: 62  NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 68.3 bits (167), Expect = 6e-14
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G+I F + Y  + + L +T+  CR+L   D       PYVKV LLPDK    K KT V +
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388
            T NP++NE   +  +    L    L   V+
Sbjct: 62  GTVNPVFNETLKYV-VEADLLSSRQLQVSVW 91

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 20/114 (17%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTGI 373
           VLVVT+ +  DL   D  +GSSDPYV        + +  TR++RK  NP++ E   F  +
Sbjct: 2   VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET-WFVLV 60

Query: 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
           TP ++K                   G  L   ++  DR++ DD +G V   L+ 
Sbjct: 61  TPDEVK------------------AGERLSCRLWDSDRFTADDRLGRVEIDLKE 96

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLR 357
           K G +    +Y      L VTVI+ +D+  KD   G+S   V + LLP K Q+ KT+V +
Sbjct: 1   KCGDLDVAFEYDPSARKLTVTVIRAQDIPTKDR-GGASSWQVHLVLLPSKKQRAKTKV-Q 58

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
           +  NP++NE FTF+ + P +L    L F ++  +R  ++
Sbjct: 59  RGPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKE 97

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
           TIV+++ +NLP MD  GL+DPYVK  L   G    K K+ V  +TLNP + E F   +  
Sbjct: 3   TIVLVEGKNLPPMDDNGLSDPYVKFRL---GNE--KYKSKVCSKTLNPQWLEQFDLHLFD 57

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR--LDL 591
           D   S  LE+ + D D   K+E IGR  +DL
Sbjct: 58  DQ--SQILEIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLR 357
           G++ F + Y      L +T+IK R+L   D  +G SDPYVKV L+ +    +K KT V +
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDI-TGFSDPYVKVSLMCEGRRLKKKKTSVKK 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392
            T NP YNE   F  + P  +   +L   V  +DR
Sbjct: 60  NTLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDR 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 69.0 bits (169), Expect = 5e-12
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 503  TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            TI++    NLP  D  G +DP+VK  L    + V K K    K+TLNPV+NE F  EV  
Sbjct: 1043 TIMLRSGENLPSSDENGYSDPFVK--LFLNEKSVYKTKVV--KKTLNPVWNEEFTIEVLN 1098

Query: 563  DNLDSVSLELLLLDWDRVTKNEVIG 587
               D +   + + DWD   KN+++G
Sbjct: 1099 RVKDVL--TINVNDWDSGEKNDLLG 1121

Length = 1227

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 62.4 bits (152), Expect = 8e-12
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQR---VAKKKTHVKKRTLNPVYNESFVFEV 560
           + VL   +L K D+ G +DPYVK+ L Y       +   +T   K+TLNP +NE F F V
Sbjct: 4   VKVLAGIDLAKKDIFGASDPYVKISL-YDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV 62

Query: 561 -PADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            P ++     L   + D +R+T+++ +G++++
Sbjct: 63  NPREH----RLLFEVFDENRLTRDDFLGQVEV 90

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNL-PKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           G+I L L  +       + V++AR L  K     L  PYVKVYLL   + +AKKKT + +
Sbjct: 18  GDIQLGLYDKKGQ--LEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75

Query: 546 RTLNPVYNESFVFEV 560
           +TL+P+Y +  VF+V
Sbjct: 76  KTLDPLYQQQLVFDV 90

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
           FTI +++A NL      GL+DPYV +      +R+AK +T     TLNP ++E F  EVP
Sbjct: 3   FTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRT--IYDTLNPRWDEEFELEVP 60

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGR 588
           A     + +   + D   V K+++ GR
Sbjct: 61  AGE--PLWISATVWDRSFVGKHDLCGR 85

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565
           VL+AR+L   D  G +DP+V+V+  Y GQ     +T V K++  P +NE F FE+     
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVF--YNGQ---TLETSVVKKSCYPRWNEVFEFELMEGAD 60

Query: 566 DSVSLELLLLDWDRVTKNEVIGRL 589
             +S+E  + DWD V+KN+ +G++
Sbjct: 61  SPLSVE--VWDWDLVSKNDFLGKV 82

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           ++ V V++ R+L  KD P+G SDPY+K+ L   K   +   +  T NP++ + F      
Sbjct: 1   LVRVYVVRARNLQPKD-PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATL 59

Query: 375 PHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           P     S L   V  +D    DD IG T
Sbjct: 60  PGN---SILKISVMDYDLLGSDDLIGET 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 16/89 (17%)

Query: 509 ARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF---EVP---- 561
           AR+L   D +GL+DP+ +V  L + Q     +T V K TL+P ++++ +F   E+     
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQ-----ETEVIKETLSPTWDQTLIFDEVELYGSPE 64

Query: 562 --ADNLDSVSLELLLLDWDRVTKNEVIGR 588
             A N   V +E  L D D V K+E +GR
Sbjct: 65  EIAQNPPLVVVE--LFDQDSVGKDEFLGR 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLL-PDKQKVK-TRVLRKTRNPIYNEEFTFTGI 373
           L V V++CRDL +K   +G+ DP+ +V L    K   K T+V +KT NP ++E F F   
Sbjct: 1   LSVRVLECRDLALKS--NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELT 58

Query: 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGS 433
                +         SF     D   S L   ++     S DD +GEV   LQ  +  GS
Sbjct: 59  IGFSYE-------KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGS 111

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
           G+I   + Y      L V V+K R+L + D    ++DP+VKV+LL D +K+   KT V R
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNL-VWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390
              NPI+NE   F+ +    L+  +L   V   
Sbjct: 61  DDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAES 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV--P 561
           + V++AR L      G  DP VKV +   GQ   KK T VKK T  P YNE F F     
Sbjct: 8   VRVIEARQLV----GGNIDPVVKVEVG--GQ---KKYTSVKKGTNCPFYNEYFFFNFHES 58

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIG--RLDLG 592
            D L    +++ + D   +  + +IG  +LD+G
Sbjct: 59  PDELFDKIIKISVYDSRSLRSDTLIGSFKLDVG 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 18/96 (18%)

Query: 504 IVVLKARNLPKMD------VTGLADPYVKVYLLYKGQRVAKK--KTHVKKRTLNPVYNES 555
           I V++A++L   D      V G +DPYV V       RV  +  K+ V K  LNP +NE 
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIV-------RVGAQTFKSKVIKENLNPKWNE- 56

Query: 556 FVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            V+E   D +    LE+ L D D   K++ +GRL +
Sbjct: 57  -VYEAVVDEVPGQELEIELFDED-PDKDDFLGRLSI 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTR---VLR 357
           G++   + Y      L V +I+ + L   D  S  SDP+VK+ L+   + +KT+    +R
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDM-SQGSDPFVKIQLVHGLKLIKTKKTSCMR 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
            T +P YNE F+F  +   +L+  +L F V+  +  S +D
Sbjct: 60  GTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSND 98

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 13/117 (11%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKK 545
           G++ ++  + P+A + T+ V++A+++P  D  G +   V + LL  K QR    KT V++
Sbjct: 3   GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQR---AKTKVQR 59

Query: 546 RTLNPVYNESFVF-EVPADNLDSVSLELLLLDWDRVTKNEVIG-------RLDLGGD 594
              NPV+NE+F F  V  + L++++L   L   +R+ K  +IG       +L+L G+
Sbjct: 60  GP-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGE 115

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 21/122 (17%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L V V+  RDL + D  S  +D +V+V         KT V++K+ NP++N E        
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKF--GSTTYKTDVVKKSLNPVWNSE-------- 50

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTL 435
                       F F+    +     L   V   D YS +D +G+V+  L       S  
Sbjct: 51  -----------WFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVS 99

Query: 436 HF 437
             
Sbjct: 100 QI 101

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 26/116 (22%)

Query: 501 RFTIVVLKARNLPKMD--------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           RF   + +A +LP+MD                 L DPYV+V   + GQ+V   KT VKK 
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVS--FAGQKV---KTSVKKN 55

Query: 547 TLNPVYNESFVFEVPADNLDSV--SLELLLLDWDRVTKNEVIGR--LDLGGDKSSG 598
           + NP +NE  VF    +    +   +++ + DWDRV  ++VIG   +DL    +SG
Sbjct: 56  SYNPEWNEQIVF---PEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 506 VLKARNLP---KMDVTGLA-DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
           +    +LP    M  TG   DP+V +     G+RV +  T  ++ TLNPV+NE   FEV 
Sbjct: 7   IKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFR--TSWRRHTLNPVFNERLAFEV- 60

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
             +  +  ++  +LD D+ + N+ +    L
Sbjct: 61  YPHEKNFDIQFKVLDKDKFSFNDYVATGSL 90

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L + + + R+L  +D   G+SDPYVK      K   K++ + K  NP+++E+FT      
Sbjct: 2   LDIHLKEGRNLAARDR-GGTSDPYVKFKY-GGKTVYKSKTIYKNLNPVWDEKFTL----- 54

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGST 434
                     +         +D+   L+  VF +DR   DD +G  F  L + E    T
Sbjct: 55  ---------PI---------EDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPT 95

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTGIT 374
           L V VI   +L   D  +G SDP+VK +L  + +KV KT+ ++KT NP++NE F    + 
Sbjct: 1   LTVDVISAENLPSADR-NGKSDPFVKFYL--NGEKVFKTKTIKKTLNPVWNESFE---VP 54

Query: 375 PHQLKGSTLHFVVFSFDRYSRDD-IGST 401
                 + L   V+ +DR  +DD +GS 
Sbjct: 55  VPSRVRAVLKVEVYDWDRGGKDDLLGSA 82

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176074 cd08692, C2B_Tac2-N, C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT 547
           E+ L  C+Q   +R  + +L+A+NLP          +VKV +   G  + KKKT + K +
Sbjct: 2   ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSS 61

Query: 548 LNPV-YNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
              V + E+ +F V       +   + L     V +   +G++ +  D SS  A+  W D
Sbjct: 62  NGQVKWGETMIFPVTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKD 120

Query: 607 VCNSPRRQIAEW 618
              +P + + +W
Sbjct: 121 TIANPEKVVTKW 132

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 135

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 14/90 (15%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHL-----LPDKQKVKTRVLRKTRNPIYNEEFT 369
           +L V V+   DL  KD   G+SDPYVK+ L       +   V+T+ ++KT NP +NEEF 
Sbjct: 1   ILRVKVLAGIDLAKKDI-FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFF 59

Query: 370 FTGITP--HQLKGSTLHFVVFSFDRYSRDD 397
           F  + P  H+L      F VF  +R +RDD
Sbjct: 60  FR-VNPREHRLL-----FEVFDENRLTRDD 83

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVL 356
           +G I  ++   +K+  L V VI+ R L  K        PYVKV+LL  K+   K KT++ 
Sbjct: 17  MGDI--QLGLYDKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIA 74

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVV 387
           RKT +P+Y ++  F         G TL  +V
Sbjct: 75  RKTLDPLYQQQLVF----DVSPTGKTLQVIV 101

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 53.7 bits (130), Expect = 6e-09
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 507 LKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565
              + L K D  G +DP++++    + G  V   +T V K TLNPV+     F +P   L
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63

Query: 566 ----DSVSLELLLLDWDRVTKNEVIG 587
                   +++ + D+D   K+++IG
Sbjct: 64  CNGDYDRPIKIEVYDYDSSGKHDLIG 89

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 10/83 (12%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA---KKKTHVKKRTLNPVYNESFV 557
             T+ VL+A N+ K D+    D YV+++L       A   KK+T   K ++NPV+NE+F 
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWL-----PTASDEKKRTKTIKNSINPVWNETFE 55

Query: 558 FEVPADNLDSVSLELLLLDWDRV 580
           F + +  + +V LEL ++D D V
Sbjct: 56  FRIQS-QVKNV-LELTVMDEDYV 76

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTG-LADPYVKVYLLYKGQRVAKKKTHVKK 545
           GEI  +L +    +   I +   RNL   D       PYVKV LL      +K+KT VKK
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLEL 572
            T+NPV+NE+  + V AD L S  L++
Sbjct: 62  GTVNPVFNETLKYVVEADLLSSRQLQV 88

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPY--VKVHLLPDKQKVK-TRVLRKTRNPIYNEEFTFTG 372
           L V VI+C DL +K   +G+ DPY  V +     KQ  K T+V +KT NP ++E F F  
Sbjct: 2   LSVRVIECSDLALK---NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58

Query: 373 ITPHQLKGS 381
                 +  
Sbjct: 59  TIDSSPEKK 67

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 25/105 (23%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           V+ + +++ ++L      +G SDPYVK  L    +K K++V  KT NP + E+F      
Sbjct: 1   VVTIVLVEGKNL-PPMDDNGLSDPYVKFRL--GNEKYKSKVCSKTLNPQWLEQFDL---- 53

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
            H                   DD    L   V+  D   +D+ +G
Sbjct: 54  -HLF-----------------DDQSQILEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           LVV V+  +DL  KD   GSS  YV++    D QK +TR   K  NP++NE+  F    P
Sbjct: 2   LVVEVVDAQDLMPKDG-QGSSSAYVELDF--DGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 376 HQLKGSTLHFVVFSFDRYSR 395
            +L    L   V++  R  R
Sbjct: 59  SRLSNLVLEVYVYNDRRSGR 78

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 11/89 (12%)

Query: 505 VVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV--PA 562
           +V+  +NLP +   G  D   KV   ++G    KKKT V +  LNPV+NE+F + +    
Sbjct: 1   LVVSLKNLPGL--KGKGDRIAKV--TFRG---VKKKTRVLENELNPVWNETFEWPLAGSP 53

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           D  +  SLE+++ D+++V +N +IG   +
Sbjct: 54  DPDE--SLEIVVKDYEKVGRNRLIGSATV 80

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           VL VT+   R L   D   G+ DPYV   +   ++  +T+V + T NP++NE        
Sbjct: 3   VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE-------- 54

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGS- 433
                  T + +V S            L+  V+ F+   +D ++G   + L S       
Sbjct: 55  -------TKYILVNSL--------TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQ 99

Query: 434 ---TLHFVVFSFDRYSRDDIVGEVFYSLQSF 461
              T + +            VGE+ Y L+ F
Sbjct: 100 ENLTKNLL-------RNGKPVGELNYDLRFF 123

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 316 LVVTVIKCRDLF-IKDTPSGSSDPYVKVHLL----PDKQKVKTRVLRK-TRNPIYNEEFT 369
           L + +I  + L   K       DPYV+V +      D  K KT+V++    NP++NE F 
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 370 FTGITPHQLKGSTLHFVVFSFDRYSRDDIG 399
           F    P     + L FVV+  D    D +G
Sbjct: 64  FDVTVPEL---AFLRFVVYDEDSGDDDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
           + +L+A+NLP     G  DPY  V L     +V   +T   ++ LNP + E FVF+ P  
Sbjct: 4   LRILEAKNLP---SKGTRDPYCTVSL----DQVEVARTKTVEK-LNPFWGEEFVFDDPPP 55

Query: 564 NLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           ++   +L     D     ++ VIG++ L
Sbjct: 56  DVTFFTLSFYNKDKRSKDRDIVIGKVAL 83

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
           ++ VL+ R+L      G  DP+ +V L Y  +   K+ T VKK+T NP ++E+F FE+  
Sbjct: 2   SVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKR-TKVKKKTNNPRFDEAFYFELTI 59

Query: 563 DN-------------LDSVSLELLLLDWDRVTKNEVIGR 588
                          L+   L + L     V+ ++ +G 
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGE 98

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 15/95 (15%)

Query: 318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFT-GITPH 376
           V VI+ R L       G+ DP VKV +   K+   T V + T  P YNE F F    +P 
Sbjct: 8   VRVIEARQL-----VGGNIDPVVKVEVGGQKKY--TSVKKGTNCPFYNEYFFFNFHESPD 60

Query: 377 QLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFD 410
           +L    +   V+       D  IGS      F  D
Sbjct: 61  ELFDKIIKISVYDSRSLRSDTLIGS------FKLD 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 315 VLVVTVIKCRDLFIKDT-----PSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFT 369
           VL + VI+ +DL  KD        G SDPYV V +    Q  K++V+++  NP +NE   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNE--V 57

Query: 370 FTGITPHQLKGSTLHFVVFSFDRYSRDDIGST 401
           +  +   ++ G  L   +F  D    D +G  
Sbjct: 58  YEAVV-DEVPGQELEIELFDEDPDKDDFLGRL 88

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 28/119 (23%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           GQ+   I+ Q     L + V++ + L  + T SG+ + YVK+ L PDK+   + KT  + 
Sbjct: 1   GQLKLSIEGQN--RKLTLHVLEAKGL--RSTNSGTCNSYVKISLSPDKEVRFRQKTSTVP 56

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDD 416
            + NP+++E F+F                       +  D    L   V++    SRD 
Sbjct: 57  DSANPLFHETFSF---------------------DVNERDYQKRLLVTVWNKLSKSRDS 94

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
             + V++A  L   D+ G +DP+  + L       A+ +TH   +TLNP +N+ F F  P
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCVLEL-----VNARLQTHTIYKTLNPEWNKIFTF--P 55

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGRL 589
             ++  V LE+ + D D+  K E +G++
Sbjct: 56  IKDIHDV-LEVTVYDEDKDKKPEFLGKV 82

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
           + V++  NL   D T  +DPYV + L   G +  K KT V K+ LNPV+NE     VP  
Sbjct: 6   VRVVRGTNLAVRDFTS-SDPYVVLTL---GNQ--KVKTRVIKKNLNPVWNEELTLSVPNP 59

Query: 564 NLDSVSLELLLLDWDRVTKNEVIG 587
                 L+L + D D  +K++ +G
Sbjct: 60  MA---PLKLEVFDKDTFSKDDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKT 359
           +G +  KIK  E       T+            +G+ DPY+ V    D+   KTRV + T
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTI------------NGTVDPYITVTF-SDRVIGKTRVKKNT 481

Query: 360 RNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
            NP++NE               T + ++ SF           L+  ++ F+ +  D +VG
Sbjct: 482 LNPVWNE---------------TFYILLNSFT--------DPLNLSLYDFNSFKSDKVVG 518

Query: 420 EVFYSLQSFETYGSTLH-FVVFSFDRYSRDDIVGEVFYSLQSFET 463
                L          +    F  +  +    VG + Y L+ F  
Sbjct: 519 STQLDLALLHQNPVKKNELYEFLRNTKN----VGRLTYDLRFFPV 559

Length = 1227

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
           + ++ V++  +L      G  DPY  V L+Y  ++   K+T VKK+T NP ++E+F F+V
Sbjct: 1   KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58

Query: 561 PADN 564
             D+
Sbjct: 59  TIDS 62

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 30/101 (29%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK----------------------- 540
           + V++A+ L   DV G +DPY  + ++   +    +K                       
Sbjct: 32  VTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91

Query: 541 -THVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD-WDR 579
            T VK +TLNPV+NE+F FEV     + VS + L LD WD 
Sbjct: 92  VTEVKPQTLNPVWNETFRFEV-----EDVSNDQLHLDIWDH 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 505 VVLK-ARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
           + LK  RNL   D  G +DPYVK    Y G+ V K KT  K   LNPV++E F   +   
Sbjct: 4   IHLKEGRNLAARDRGGTSDPYVKFK--YGGKTVYKSKTIYK--NLNPVWDEKFTLPI--- 56

Query: 564 NLDSVSLELLL--LDWDRVTKNEVIGR--LDL 591
             + V+  L +   D+DR   ++ +G   +DL
Sbjct: 57  --EDVTQPLYIKVFDYDRGLTDDFMGSAFVDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565
           V+ A++L   D  G +  YV++   + GQ+   K+T  K + LNPV+NE  VF V     
Sbjct: 6   VVDAQDLMPKDGQGSSSAYVELD--FDGQK---KRTRTKPKDLNPVWNEKLVFNVS---- 56

Query: 566 DSVSLELLLLD 576
           D   L  L+L+
Sbjct: 57  DPSRLSNLVLE 67

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 501 RFTIVVLKARNLPKM--DVTGLADPYVKVYLLYKG---QRVAKKKTHVKKR-TLNPVYNE 554
             TI ++  + LPK   D   + DPYV+V +   G      AK KT V K    NPV+NE
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIH--GLPADDSAKFKTKVVKNNGFNPVWNE 60

Query: 555 SFVFEV 560
           +F F+V
Sbjct: 61  TFEFDV 66

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 18/100 (18%)

Query: 501 RFTIVVLKARNLPKMD-VTGLADPYVKV------YLLYKGQRVAKKKTHVKKRTLNPVYN 553
             TI   +A +LPK D  TG +DPYV          LY         T + ++ LNPV+ 
Sbjct: 4   VVTIH--RATDLPKADFGTGSSDPYVTASFAKFGKPLYS--------TRIIRKDLNPVWE 53

Query: 554 ES-FVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG 592
           E+ FV   P +      L   L D DR T ++ +GR+++ 
Sbjct: 54  ETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEID 93

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 315 VLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGI 373
           VL V V++ +DL  KD +  G SDPY  + +    Q+ KT+ +  T NP +N    F   
Sbjct: 2   VLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFP-- 57

Query: 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                                       L  +++  DR++  D +GE   +L+ 
Sbjct: 58  --------------------IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
           + +I V+ A+ L   D TG +DPYV V +   G+   KK+T    + LNPV+NE F FE
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQV---GK--TKKRTKTIPQNLNPVWNEKFHFE 55

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTR---VL 356
           LG I   + Y    N L V V++ R L   D     +  YVKV L+   + VKT+   V+
Sbjct: 1   LGDIQISLTYNPTLNRLTVVVLRARGLRQLD--HAHTSVYVKVSLMIHNKVVKTKKTEVV 58

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVV 387
               +P +NE F+F  +T  QL  ++L   V
Sbjct: 59  DGAASPSFNESFSF-KVTSRQLDTASLSLSV 88

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHL--LPDKQKVKTRVLRKTRNPIYNEEFTFTG 372
           +L V V++  ++   D  S + D YV++ L    D +K +T+ ++ + NP++NE F F  
Sbjct: 1   LLTVRVLRATNITKGDLLS-TPDCYVELWLPTASD-EKKRTKTIKNSINPVWNETFEF-- 56

Query: 373 ITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
               Q+K + L   V   D Y  DD   T+ F V
Sbjct: 57  RIQSQVK-NVLELTVMDED-YVMDDHLGTVLFDV 88

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 21/114 (18%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGIT 374
           L +T+I   DL       G    Y  V + P   K  T V R    NP +NE        
Sbjct: 2   LEITIISAEDL-KNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETL------ 53

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
                        F  D          L   V+       D ++GEV   L+  
Sbjct: 54  ------------RFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++ LS+  Q    + T+ VL+A+ L   + +G  + YVK+ L    +   ++KT     
Sbjct: 1   GQLKLSIEGQ--NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD 57

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK 582
           + NP+++E+F F+V   N       LL+  W++++K
Sbjct: 58  SANPLFHETFSFDV---NERDYQKRLLVTVWNKLSK 90

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 504 IVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
           + V++A++L   D    G +DPY  + +   G    + KT     TLNP +N     E P
Sbjct: 5   VHVVEAKDLAAKDRSGKGKSDPYAILSV---GA--QRFKTQTIPNTLNPKWNYW--CEFP 57

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
             +  +  L+L+L D DR    + +G  D+
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDI 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA--KKKTHVKKRT-LNPVYNESFVFEV 560
           +VVLKARNLP        DPY  +       R+    KKT    R   +P ++E   FE+
Sbjct: 5   VVVLKARNLPNKRKLDKQDPYCVL-------RIGGVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 561 PADNLDSVSLELLLLDWDRVTKNEVIGR--LDL 591
             D      L++ + D D   K ++IG   +DL
Sbjct: 58  TED--KKPILKVAVFD-DDKRKPDLIGDTEVDL 87

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 558
            + V  A  L K D  G ADPYV +    +G+ V   ++ V+K TL+P ++   +F
Sbjct: 6   QVHVHSAEGLSKQDSGGGADPYVIIKC--EGESV---RSPVQKDTLSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 504 IVVLKARNLPKMD--VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
           + +  A  L K D  + G  DPY+ V    +       KT VKK TLNPV+NE+F   + 
Sbjct: 440 VKIKSAEGLKKSDSTINGTVDPYITVTFSDRV----IGKTRVKKNTLNPVWNETFY--IL 493

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDLG 592
            ++     L L L D++    ++V+G   L 
Sbjct: 494 LNSFTD-PLNLSLYDFNSFKSDKVVGSTQLD 523

Length = 1227

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 324 RDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT----PHQLK 379
           RDL   D  SG SDP+ +V  L   Q  +T V+++T +P +++   F  +     P ++ 
Sbjct: 11  RDLLAADK-SGLSDPFARVSFL--NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIA 67

Query: 380 GSTLHFVV--FSFDRYSRDD-IGSTL 402
            +    VV  F  D   +D+ +G ++
Sbjct: 68  QNPPLVVVELFDQDSVGKDEFLGRSV 93

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
           + +TV+  + L  KD  +G+SDPYV V +   K K +T+ + +  NP++NE+F F
Sbjct: 3   ISITVVCAQGLIAKDK-TGTSDPYVTVQV--GKTKKRTKTIPQNLNPVWNEKFHF 54

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
           I +++ +NLP  D+TG +DPY  V    K       +T    +TLNP + E +   +P  
Sbjct: 4   IRIVEGKNLPAKDITGSSDPYCIV----KVDNEVIIRTATVWKTLNPFWGEEYTVHLP-- 57

Query: 564 NLDSVSLELLLLDWDRVTKNEVIGRLDL 591
                ++   +LD D +++++VIG++ L
Sbjct: 58  -PGFHTVSFYVLDEDTLSRDDVIGKVSL 84

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 25/108 (23%)

Query: 319 TVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQL 378
            V+  ++L       G  D   KV     K+K  TRVL    NP++NE            
Sbjct: 1   LVVSLKNLPGLK---GKGDRIAKVTFRGVKKK--TRVLENELNPVWNE------------ 43

Query: 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426
                    F +      D   +L  VV  +++  R+ ++G    SLQ
Sbjct: 44  --------TFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQ 83

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 507 LKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK--KTHVKKRTLNPVYNESFVFE 559
           +  RNL   DV   +DP+V VY+   G     +  +T V K  LNP +  +F  +
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD 61

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561
             + +  A+NLP    T    PYV++ +   G+    +K+ VK+RT NPV+ E F F V 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTV---GK--TTQKSKVKERTNNPVWEEGFTFLVR 56

Query: 562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
                 + +E+     D  T    +G L L
Sbjct: 57  NPENQELEIEVK----DDKTGKS-LGSLTL 81

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRV-LRKTRNPIYNEEFTF 370
           L VTVI+ +DL   D  +   + +VK  L    Q ++TR    +  NP +NEE  F
Sbjct: 2   LRVTVIEAQDLVPSD-KNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMF 54

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 25/111 (22%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L   V++ RDL  KD  +G+SDP+V+V    + Q ++T V++K+  P +NE         
Sbjct: 2   LRCHVLEARDLAPKDR-NGTSDPFVRVFY--NGQTLETSVVKKSCYPRWNE--------- 49

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426
                      VF F+    +   S L   V+ +D  S++D +G+V +S+Q
Sbjct: 50  -----------VFEFEL--MEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQ 87

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565
           V+KAR LP        DP V+V L   G      K  ++ RT NP +N+ F F    D L
Sbjct: 6   VVKARGLP----ANSNDPVVEVKL---GNYKGSTK-AIE-RTSNPEWNQVFAFS--KDRL 54

Query: 566 DSVSLELLLLDWDRVT-KNEVIGRL--DLG 592
              +LE+ +  WD+   K++ +G +  DL 
Sbjct: 55  QGSTLEVSV--WDKDKAKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L+V  IK          +GSS+PY  + +    QK ++   + T NP ++E F F     
Sbjct: 1   LLVKNIK---ANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLF----- 52

Query: 376 HQLKGST--LHFVVF 388
            +L  ++  L F V+
Sbjct: 53  -ELSPNSKELLFEVY 66

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 25/93 (26%)

Query: 337 DPYVKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395
           DP+V +      ++V +T   R T NP++NE   F  + PH+           +FD    
Sbjct: 27  DPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE-VYPHEK----------NFD---- 68

Query: 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
                 + F V   D++S +D V     S+Q  
Sbjct: 69  ------IQFKVLDKDKFSFNDYVATGSLSVQEL 95

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L+V +++ RDL   +  +G SDPY +V +    Q+ KT+V+  T NP +N    F     
Sbjct: 17  LMVVIVEGRDLKPCN-SNGKSDPYCEVSM--GSQEHKTKVVSDTLNPKWNSSMQF---FV 70

Query: 376 HQLKGSTLHFVVFSFDRYSRDD 397
             L+   L   VF  D +S DD
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDD 92

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 26/104 (25%)

Query: 324 RDLFIKDTPSGSSDPYVKVHLLPDKQKVK-TRVLRKTRNPIYNEEFTFTGITPHQLKGST 382
           + L   ++ +G   PY +++L  + + V  TRV +KT NP +N                 
Sbjct: 1   KGLDTSESKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNAST-------------- 44

Query: 383 LHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426
             F+V        D   S +  VV   DR   D ++G V  SL 
Sbjct: 45  -EFLV-------TDRRKSRVTVVVKD-DRDRHDPVLGSVSISLN 79

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 333 SGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS 389
           S   DPYV+V    D Q   KT V +KT NP +NE FT   +TP     STL F V+S
Sbjct: 19  SFKPDPYVEV--TVDGQPPKKTEVSKKTSNPKWNEHFTVL-VTPQ----STLEFKVWS 69

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 28/84 (33%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPY---------------------------VKVHLLPD 347
           VL VTVI+ + L  KD  +G SDPY                           V    +P 
Sbjct: 29  VLKVTVIEAKGLLAKD-VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPA 87

Query: 348 KQKVKTRVLRKTRNPIYNEEFTFT 371
           K    T V  +T NP++NE F F 
Sbjct: 88  KSIKVTEVKPQTLNPVWNETFRFE 111

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 317 VVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFT 371
            VTV++ R L  K   SG++D YV + L   K+K  T V  KT +P++ EE +F 
Sbjct: 2   QVTVLQARGLLCK-GKSGTNDAYVIIQL--GKEKYSTSVKEKTTSPVWKEECSFE 53

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
           V  V V     L  +D   G +DPYV +    + + V++ V + T +P ++ +  F
Sbjct: 4   VTQVHVHSAEGLSKQD-SGGGADPYVIIKC--EGESVRSPVQKDTLSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 29/128 (22%)

Query: 313 ENVLVVTVIKCRDLFIKDTPSGSS----DPYVKVHL-LP--DKQKVKTRVLRKTRNPIYN 365
           ++ + +T+++C  +     PSG +    D YVK     P  + Q  KT  ++ T +P YN
Sbjct: 1   DSSIELTIVRCIGI---PLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYN 57

Query: 366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFS---FDRYSRDDIVGEVF 422
           E F       H+           SF R  +      L F V+    F R   D ++G   
Sbjct: 58  ESFKLNINRKHR-----------SFQRVFKR---HGLKFEVYHKGGFLR--SDKLLGTAQ 101

Query: 423 YSLQSFET 430
             L+  ET
Sbjct: 102 VKLEPLET 109

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565
           + KA +L  ++  G  DPYV+V +      + K +T     TLNPV++E     V + N 
Sbjct: 7   IRKANDLKNLEGVGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVPVTSPN- 61

Query: 566 DSVSLELLLLDWDRVTKNEVIGRLDL 591
             ++LE  ++D+++V K+  +G +++
Sbjct: 62  QKITLE--VMDYEKVGKDRSLGSVEI 85

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
           L V VI+   L   D   G SDP+  + L+    +++T  + KT NP +N+ FTF
Sbjct: 3   LQVKVIRASGLAAADI-GGKSDPFCVLELV--NARLQTHTIYKTLNPEWNKIFTF 54

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 31/109 (28%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPY--VKVHLLPDKQKV-KTRVLRKTRNPIYNEEFTFTG 372
           L + +++ ++L  KD  +GSSDPY  VKV    D + + +T  + KT NP + EE+T   
Sbjct: 2   LYIRIVEGKNLPAKDI-TGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTV-- 54

Query: 373 ITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEV 421
                L     H                T+ F V   D  SRDD++G+V
Sbjct: 55  ----HLPP-GFH----------------TVSFYVLDEDTLSRDDVIGKV 82

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 302 QIFFKIKYQEKENVLVVTVIKCRD---LFIKDTPSGSSDPYVKVHLLPDKQKV----KTR 354
           Q+   ++Y   ++ LV++V + R+   L I +    +S  YV+V LLP         +T+
Sbjct: 2   QVQIGLRYDSGDSSLVISVEQLRNLSALSIPE----NSKVYVRVALLPCSSSTSCLFRTK 57

Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
            L     P++NE F    I+  +L   TL   V S     +++ 
Sbjct: 58  ALEDQDKPVFNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEEC 100

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 16/95 (16%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L V V+K R L     P+ S+DP V+V L     K  T+ + +T NP +N+ F F+    
Sbjct: 2   LYVRVVKARGL-----PANSNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFSKDR- 53

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFD 410
             L+GSTL   V+  D+   D +G         FD
Sbjct: 54  --LQGSTLEVSVWDKDKAKDDFLGG------VCFD 80

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 510 RNLPK-MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSV 568
           + L      TGL  PY ++YL   G+ V    T VKK+T NP +N S  F V  D   S 
Sbjct: 1   KGLDTSESKTGLLSPYAELYL--NGKLV--YTTRVKKKTNNPSWNASTEFLVT-DRRKSR 55

Query: 569 SLELLLLDWDRVTKNEVIG 587
            + +++ D DR   + V+G
Sbjct: 56  -VTVVVKD-DRDRHDPVLG 72

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 556
           R T+  L A  L K D+  L DP+  +  +  GQ      T V K+TL+P +NE F
Sbjct: 3   RLTV--LCADGLAKRDLFRLPDPFAVI-TVDGGQ---THSTDVAKKTLDPKWNEHF 52

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 337 DPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFT 371
           DPYV+V      QKVKT V + + NP +NE+  F 
Sbjct: 36  DPYVEVSFA--GQKVKTSVKKNSYNPEWNEQIVFP 68

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
           R  +V+++ R+L   +  G +DPY +V +        + KT V   TLNP +N S  F V
Sbjct: 16  RLMVVIVEGRDLKPCNSNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 561 PADNLDSVSLELLLLDWDRVTKNEVIGR 588
                D   L + + D D  + ++ +GR
Sbjct: 71  KDLEQD--VLCITVFDRDFFSPDDFLGR 96

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 20/58 (34%), Positives = 23/58 (39%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
           TIV      LP        D YVK    Y  +     KT   K T +P YNESF   +
Sbjct: 7   TIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNI 64

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 91  ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE----VSGHTVLGLGLA 146
           A + +EEY+    +L  KLK+ E  A+  EK   +L++E  RLE     S      L   
Sbjct: 24  AQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAE 83

Query: 147 GLVFAATVCLATCYCRRRTSPLE--AKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPS 204
                A V        ++ +      ++L  +Q   +R       AAA           +
Sbjct: 84  VDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAA-----------A 132

Query: 205 PTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQ 237
           PT    VA+ VN      + N    S       
Sbjct: 133 PTAPPHVAAPVNGEQLEPDDNGEEASADLETDP 165

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV----KTRVLRKTRNPIY 364
           Y      L V VIK  + F     + + D YVK+ LL    +     KT + R   +P +
Sbjct: 10  YNALTGRLSVEVIKGSN-FKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEF 68

Query: 365 NEEFTFTGITPHQLKGSTLHFVVFS 389
            E F F  +   QL   TL F V++
Sbjct: 69  KETFVFQ-VALFQLSEVTLMFSVYN 92

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF---EV 560
           + V++A++L   D   + + +VK  L   G +V + +   + R  NP +NE  +F   E 
Sbjct: 4   VTVIEAQDLVPSDKNRVPEVFVKAQL---GNQVLRTRP-SQTRNGNPSWNEELMFVAAEP 59

Query: 561 PADNLDSVSLELLLLDWDRVTKN--EVIGR 588
             D+L  +S+E      DRV  N  E +GR
Sbjct: 60  FEDHL-ILSVE------DRVGPNKDEPLGR 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN 564
           VL+A  LP   V     PY  + L      V   +T V++   NPV++E FVF+ +P   
Sbjct: 10  VLEAHKLPVKHVP---HPYCVISL----NEVKVARTKVRE-GPNPVWSEEFVFDDLPP-- 59

Query: 565 LDSVSLELLLLDWDRVTKNEVIGRL 589
            D  S  + L +  + +K+  I  +
Sbjct: 60  -DVNSFTISLSNKAKRSKDSEIAEV 83

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 504 IVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
           + +  AR L   D + G  DPYV   +     R    +T VKK T NPV+NE+    V  
Sbjct: 6   VTIKSARGLKGSDIIGGTVDPYVTFSI---SNRRELARTKVKKDTSNPVWNETKYILV-- 60

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            N  +  L L + D++   K+++IG  + 
Sbjct: 61  -NSLTEPLNLTVYDFNDKRKDKLIGTAEF 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK----THVKKRTLNPVYNESFVF 558
           T+ V+ A +L K   TG+  P+V+V L+  G  ++ KK    T  K    +P YNE+F F
Sbjct: 3   TVKVVAANDL-KWQTTGMFRPFVEVNLI--GPHLSDKKRKFATKSKNNNWSPKYNETFQF 59

Query: 559 EVPA-DNLDSVSLELLLLDWDRVTKNEVIG 587
            +   D+ +S  L + + D+     + ++G
Sbjct: 60  ILGNEDDPESYELHICVKDYCFARDDRLVG 89

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 316  LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
            L + +    +L   D  +G SDP+VK+  L +K   KT+V++KT NP++NEEFT      
Sbjct: 1042 LTIMLRSGENLPSSDE-NGYSDPFVKL-FLNEKSVYKTKVVKKTLNPVWNEEFTI----- 1094

Query: 376  HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTL 435
             ++       +                   V  +D   ++D++G     L   E  G+T 
Sbjct: 1095 -EVLNRVKDVLT----------------INVNDWDSGEKNDLLGTAEIDLSKLEPGGTTN 1137

Query: 436  HFVVF 440
              +  
Sbjct: 1138 SNIPL 1142

Length = 1227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	622
KOG1028|consensus	421		100.0
KOG1028|consensus	421		100.0
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.95
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.95
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.95
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.95
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.93
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.93
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.93
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.93
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.92
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.92
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.92
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.91
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.9
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.9
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.88
KOG1013|consensus	362		99.88
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.86
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.86
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.86
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.85
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.85
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.85
KOG2059|consensus	800		99.84
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.84
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.83
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.83
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.83
KOG1003|consensus	205		99.83
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.83
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.82
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.82
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.82
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.82
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.82
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.81
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.81
KOG2059|consensus	800		99.81
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.81
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.81
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.8
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.79
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.79
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.79
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.79
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.79
KOG0696|consensus	683		99.78
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.78
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.78
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.77
KOG1013|consensus	362		99.77
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.77
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.77
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.76
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.76
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.75
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.75
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.75
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.74
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.74
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.74
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.73
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.73
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.73
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.73
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.72
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.72
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.72
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.72
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.71
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.71
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.7
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.7
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.7
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.7
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.69
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.69
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.69
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.69
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.68
KOG0696|consensus	683		99.68
KOG1030|consensus	168		99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.67
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.66
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.66
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.66
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.65
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.65
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.64
KOG1030|consensus	168		99.64
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.64
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.64
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.63
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.63
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.63
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.62
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.62
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.62
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.62
KOG1327|consensus	529		99.62
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.62
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.62
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.61
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.61
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.61
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.6
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.6
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.6
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.6
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.6
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.59
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.59
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.59
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.59
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.59
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.58
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.58
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.58
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.58
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.58
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.57
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.57
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.57
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.57
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.56
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.56
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.56
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.56
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.56
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.55
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.55
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.55
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.55
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.55
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.54
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.54
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.54
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.54
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.54
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.53
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.53
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.53
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.53
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.53
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.53
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.52
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.52
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.51
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.51
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.51
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.5
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.5
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.5
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.5
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.5
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.49
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.49
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.49
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.48
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.48
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.48
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.47
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.46
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.46
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.46
KOG1326|consensus	1105		99.46
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.46
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.45
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.44
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.44
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.43
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.42
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.42
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.42
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.42
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.41
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.41
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.41
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.4
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.4
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.36
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.35
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.35
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.35
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.35
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.34
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.34
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.33
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.32
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.31
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.25
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.25
PLN03008	868	Phospholipase D delta	99.24
PLN03008	868	Phospholipase D delta	99.24
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.21
KOG1326|consensus	1105		99.16
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.13
KOG1327|consensus	529		99.12
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.1
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.06
KOG1011|consensus	1283		99.06
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.02
KOG1328|consensus	1103		98.99
KOG1328|consensus	1103		98.96
PLN02223	537	phosphoinositide phospholipase C	98.96
PLN02952	599	phosphoinositide phospholipase C	98.92
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.91
KOG0905|consensus	1639		98.9
KOG0905|consensus	1639		98.83
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.82
KOG1011|consensus	1283		98.82
PLN02230	598	phosphoinositide phospholipase C 4	98.75
PLN02222	581	phosphoinositide phospholipase C 2	98.73
KOG1031|consensus	1169		98.72
PLN02223	537	phosphoinositide phospholipase C	98.66
PLN02228	567	Phosphoinositide phospholipase C	98.65
KOG0169|consensus	746		98.64
PLN02952	599	phosphoinositide phospholipase C	98.59
PLN02270	808	phospholipase D alpha	98.54
KOG1264|consensus	1267		98.5
PLN02230	598	phosphoinositide phospholipase C 4	98.47
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.46
PLN02222	581	phosphoinositide phospholipase C 2	98.45
KOG1031|consensus	1169		98.41
PLN02228	567	Phosphoinositide phospholipase C	98.4
KOG2060|consensus	405		98.39
PLN02270	808	phospholipase D alpha	98.38
KOG0169|consensus	746		98.36
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.29
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.29
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.25
KOG1264|consensus	1267		98.12
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.83
KOG2060|consensus	405		97.75
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.69
PLN02352	758	phospholipase D epsilon	97.56
PLN02964	644	phosphatidylserine decarboxylase	97.28
PLN02352	758	phospholipase D epsilon	97.27
PLN02964	644	phosphatidylserine decarboxylase	96.99
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.92
KOG1003|consensus	205		96.91
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.75
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.72
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	96.38
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.38
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.35
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.28
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.37
KOG1265|consensus	1189		94.75
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.64
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.57
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.51
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.46
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.36
KOG3837|consensus	523		94.24
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.1
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.06
KOG3837|consensus	523		92.91
PF15627	156	CEP76-C2: CEP76 C2 domain	92.44
KOG1265|consensus	1189		92.17
PF15627	156	CEP76-C2: CEP76 C2 domain	91.43
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	91.38
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.93
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	90.13
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	89.02
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	87.9
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	87.72
PF11471	60	Sugarporin_N: Maltoporin periplasmic N-terminal ex	87.24
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.9
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	86.19
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	85.99
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	85.07
KOG1452|consensus	442		85.01
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.39
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.25
KOG1452|consensus	442		81.07
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	80.83
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	80.6

>KOG1028|consensus

Probab=100.00  E-value=5.3e-41  Score=359.89  Aligned_cols=269  Identities=49%  Similarity=0.825  Sum_probs=239.3

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      ....|+|.+++.|......|.|+|++|++|+.+| ..|.+||||+++++|+.+ +.+|++.++++||+|||+|.|. +..
T Consensus       150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d-~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~  227 (421)
T KOG1028|consen  150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKD-RGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPY  227 (421)
T ss_pred             ceeeeeEEEEEEecccCCEEEEEEEEecCCCccc-CCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCH
Confidence            4567999999999999999999999999999999 788999999999999885 9999999999999999999998 888


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEE
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVF  455 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~  455 (622)
                      +++....|.+.||                   |+|++++|++||++.++|..+.....                  ...|
T Consensus       228 ~~l~~~~L~l~V~-------------------~~drfsr~~~iGev~~~l~~~~~~~~------------------~~~w  270 (421)
T KOG1028|consen  228 EELSNRVLHLSVY-------------------DFDRFSRHDFIGEVILPLGEVDLLST------------------TLFW  270 (421)
T ss_pred             HHhccCEEEEEEE-------------------ecCCcccccEEEEEEecCcccccccc------------------ceee
Confidence            8898888888888                   99999999999999999888861111                  2233


Q ss_pred             EeeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE
Q psy1415         456 YSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR  535 (622)
Q Consensus       456 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~  535 (622)
                      ..+.....                . .....|+|.++++|.|..|.|+|.|++|++|..++..+.+||||++.+..++++
T Consensus       271 ~~l~~~~~----------------~-~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~  333 (421)
T KOG1028|consen  271 KDLQPSST----------------D-SEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR  333 (421)
T ss_pred             eccccccC----------------C-cccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce
Confidence            33332111                1 112228999999999999999999999999999999999999999999988888


Q ss_pred             eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      ..+++|.+.++++||+|||+|.|.|+...+++.+|.|+|||++.++++++||++.++.. ..+.+..||.+++++|++++
T Consensus       334 ~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~-~~~~~~~hW~~m~~~p~~pv  412 (421)
T KOG1028|consen  334 LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD-STGEEVRHWQEMLNSPRKPV  412 (421)
T ss_pred             eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC-CCchHHHHHHHHHhCccCce
Confidence            88999999999999999999999999988999899999999999999999999999974 46788999999999999999


Q ss_pred             eeEEecC
Q psy1415         616 AEWLTYR  622 (622)
Q Consensus       616 ~~w~~l~  622 (622)
                      ++||.||
T Consensus       413 ~~wh~l~  419 (421)
T KOG1028|consen  413 AQWHSLR  419 (421)
T ss_pred             eeeEecc
Confidence            9999997

>KOG1028|consensus

Probab=100.00  E-value=1.7e-33  Score=301.97  Aligned_cols=250  Identities=23%  Similarity=0.274  Sum_probs=211.8

Q ss_pred             hhhhhcccccceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCC
Q psy1415         129 EVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYA  208 (622)
Q Consensus       129 ~~~~le~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~  208 (622)
                      .++.-+.++-..+|.+-+++.|+.                +...|.++|+.+.++++.+..+.+||   |||+.++|+++
T Consensus       141 ~~~~~~~~~~~~~G~l~fsl~Yd~----------------~~~~L~V~V~qa~~Lp~~d~~g~sdp---yVK~~llPdk~  201 (421)
T KOG1028|consen  141 SLDSNELENVKAVGNLQFSLQYDF----------------ELNLLTVRVIQAHDLPAKDRGGTSDP---YVKVYLLPDKK  201 (421)
T ss_pred             ccccCCCccceeeeeEEEEEEecc----------------cCCEEEEEEEEecCCCcccCCCCCCC---eeEEEEcCCCC
Confidence            333344445678999999999988                66667777777777777776677899   99999999999


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCCCCCCCCCCCCccccccccc
Q psy1415         209 TPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKE  288 (622)
Q Consensus       209 ~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~~  288 (622)
                      ++.||+|.++|+||.|||+|.|. +.+.++..+.|.|.|||+|+++++++||++.++|..+.....      ...|....
T Consensus       202 ~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~------~~~w~~l~  274 (421)
T KOG1028|consen  202 GKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST------TLFWKDLQ  274 (421)
T ss_pred             CcceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccccc------ceeeeccc
Confidence            99999999999999999999999 888889999999999999999999999999999888765542      23465544


Q ss_pred             cccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeee
Q psy1415         289 TVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYN  365 (622)
Q Consensus       289 ~~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~  365 (622)
                      .........  .|+|.+++.|.|..++|.|.|++|+||..++ .++.+||||+++++.+++   ++||.+.++++||+||
T Consensus       275 ~~~~~~~~~--~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~-~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~n  351 (421)
T KOG1028|consen  275 PSSTDSEEL--AGELLLSLCYLPTAGRLTVVVIKARNLKSMD-VGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFN  351 (421)
T ss_pred             cccCCcccc--cceEEEEEEeecCCCeEEEEEEEecCCCccc-CCCCCCccEEEEEecCCceeeeeeeecccCCCCCccc
Confidence            332222222  2899999999999999999999999999999 799999999999987765   8999999999999999


Q ss_pred             ceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       366 e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      |+|.|. ++++++++..+.|.||                   |++.++++++||.+.+....
T Consensus       352 esf~F~-vp~~~l~~~~l~l~V~-------------------d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  352 ETFVFD-VPPEQLAEVSLELTVW-------------------DHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccEEEe-CCHHHhheeEEEEEEE-------------------EcccccccceeeEEEecCCC
Confidence            999996 9999998877777777                   99999999999998887765

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.95  E-value=2e-26  Score=258.52  Aligned_cols=382  Identities=21%  Similarity=0.266  Sum_probs=250.0

Q ss_pred             CCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCC
Q psy1415         190 AAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGN  269 (622)
Q Consensus       190 ~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l  269 (622)
                      ++.||   ||.+...  +.-..||++.+++.||+|||+|+....+..    ++|.++|||+|+...|+.+|.+.+.|..+
T Consensus       457 ~~vDp---yit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n~~~sd~vvG~~~l~L~~L  527 (1227)
T COG5038         457 GTVDP---YITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFNSFKSDKVVGSTQLDLALL  527 (1227)
T ss_pred             CCCCc---eEEEEec--cccCCccceeeccCCccccceEEEEecccC----CceeEEEEeccccCCcceeeeEEechHHh
Confidence            56788   9999963  555559999999999999999999877766    89999999999999999999999877766


Q ss_pred             CCCCCCCCCCccc--------------cccccccccCC---CC---CCCcceEEEEEEE---------------------
Q psy1415         270 GPAANGTDSDDSC--------------ALVNKETVDCD---GN---AEGKLGQIFFKIK---------------------  308 (622)
Q Consensus       270 ~~~~~~~~~~~~~--------------~~~~~~~~~~~---~~---~~~~~G~i~~~l~---------------------  308 (622)
                      ...+....+....              .|+..-.....   ..   .....|-+.+.+.                     
T Consensus       528 ~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~  607 (1227)
T COG5038         528 HQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYT  607 (1227)
T ss_pred             hhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEe
Confidence            5443221110000              00000000000   00   0111122322222                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy1415         309 --------------------------------------------------------------------------------  308 (622)
Q Consensus       309 --------------------------------------------------------------------------------  308 (622)
                                                                                                      
T Consensus       608 ~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~  687 (1227)
T COG5038         608 NAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFI  687 (1227)
T ss_pred             cceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcceEEE
Confidence                                                                                            


Q ss_pred             ---EEC---------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeE
Q psy1415         309 ---YQE---------------KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFT  369 (622)
Q Consensus       309 ---~~~---------------~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~  369 (622)
                         |.|               ..|.+++.|..|.+|.... .++++|||+++.+  ++. ++||-....++||.|++...
T Consensus       688 t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i-~g~~~dPya~v~~--n~~~k~rti~~~~~~npiw~~i~Y  764 (1227)
T COG5038         688 TNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEI-PGGKSDPYATVLV--NNLVKYRTIYGSSTLNPIWNEILY  764 (1227)
T ss_pred             EeccceeeccccccceeeecCccceEEEEeehhhcccccc-cCcccccceEEEe--cceeEEEEecccCccccceeeeEE
Confidence               111               1377899999999999777 7899999999999  554 89999999999999999876


Q ss_pred             EcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEee-----c-
Q psy1415         370 FTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSF-----D-  443 (622)
Q Consensus       370 f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l-----~-  443 (622)
                      ..+..+.+    .+.+.+                   .|++..+.|..+|++.++++++...+.........-     . 
T Consensus       765 v~v~sk~~----r~~l~~-------------------~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~  821 (1227)
T COG5038         765 VPVTSKNQ----RLTLEC-------------------MDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGK  821 (1227)
T ss_pred             EEecCCcc----EEeeee-------------------ecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccc
Confidence            65444332    344444                   488889999999999999998876322111100000     0 


Q ss_pred             -cCCCCccceeEEEeeecccc----------------------------cCc----------------------------
Q psy1415         444 -RYSRDDIVGEVFYSLQSFET----------------------------YGH----------------------------  466 (622)
Q Consensus       444 -~~~~~~~~g~~~~~l~~~~~----------------------------~~~----------------------------  466 (622)
                       ..+...+.|.+-|....+..                            .++                            
T Consensus       822 l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k  901 (1227)
T COG5038         822 LSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLK  901 (1227)
T ss_pred             cccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcc
Confidence             00001111111111100000                            000                            


Q ss_pred             -------cc-----------------------ccc-cc--------------------------------------cCc-
Q psy1415         467 -------SL-----------------------SFC-RD--------------------------------------IQP-  476 (622)
Q Consensus       467 -------~~-----------------------~~~-~~--------------------------------------~~~-  476 (622)
                             .+                       ..- .+                                      ... 
T Consensus       902 ~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a  981 (1227)
T COG5038         902 PKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNA  981 (1227)
T ss_pred             hhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCC
Confidence                   00                       000 00                                      000 


Q ss_pred             --cc---------------------cccccCCCCceeeeccccCC------------ccEEEEEEEeecCCCCCCCCCCC
Q psy1415         477 --RN---------------------LRIKSQGRGEILLSLCWQPA------------ANRFTIVVLKARNLPKMDVTGLA  521 (622)
Q Consensus       477 --~~---------------------~~~~~~~~G~l~i~l~~~~~------------~g~L~V~I~~A~~L~~~d~~g~s  521 (622)
                        .+                     ....-.+...+.+++.|.|.            .|.|.|.+..|.||+..|.+|.+
T Consensus       982 ~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~s 1061 (1227)
T COG5038         982 KKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYS 1061 (1227)
T ss_pred             cccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCC
Confidence              00                     00000111345555666654            48999999999999999999999


Q ss_pred             CcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCccc
Q psy1415         522 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL  601 (622)
Q Consensus       522 DPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~  601 (622)
                      ||||++.+  ++..  .++|.++++|+||.|||.|..+|.+...+  .++|.|+|||...+++.||.+.|+|..+.....
T Consensus      1062 Dpfv~~~l--n~k~--vyktkv~KktlNPvwNEe~~i~v~~r~~D--~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038        1062 DPFVKLFL--NEKS--VYKTKVVKKTLNPVWNEEFTIEVLNRVKD--VLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred             CceEEEEe--ccee--cccccchhccCCCCccccceEeeeccccc--eEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence            99999999  5543  78999999999999999999999876544  499999999999999999999999987766666


Q ss_pred             chhhhhhcCCC
Q psy1415         602 THWTDVCNSPR  612 (622)
Q Consensus       602 ~~W~~L~~~p~  612 (622)
                      ..|.=.+..+.
T Consensus      1136 ~n~~i~ldgk~ 1146 (1227)
T COG5038        1136 TNSNIPLDGKT 1146 (1227)
T ss_pred             cceeeeccCcc
Confidence            66666655544

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.95  E-value=7.4e-28  Score=216.49  Aligned_cols=133  Identities=25%  Similarity=0.481  Sum_probs=123.0

Q ss_pred             ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCC-CCeeecEEEEEecCCCCC
Q psy1415         488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL-NPVYNESFVFEVPADNLD  566 (622)
Q Consensus       488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tl-nP~wne~f~f~v~~~~l~  566 (622)
                      +|+++++|+|..++|+|.|++|+||++++..+.+||||++++.+.++...++||+++++|+ ||.|||.|.|+|+.+. .
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~   80 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-H   80 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-h
Confidence            7899999999999999999999999998777888999999999888888899999999995 6999999999999764 4


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      +.+|.|+|||++..+++++||++.++.+...+.+..||.+++.+|+++|++||.|
T Consensus        81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence            6889999999999999999999999987666778999999999999999999987

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.95  E-value=4.3e-28  Score=221.15  Aligned_cols=136  Identities=40%  Similarity=0.627  Sum_probs=126.4

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD  563 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~  563 (622)
                      .|+|+++++|.|..+.|.|.|++|+||++++.  .+.+||||++++.+++++..++||+++++++||+|||.|.|.|+..
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            38999999999999999999999999999983  3558999999999877777789999999999999999999999988


Q ss_pred             CCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         564 NLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       564 ~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      ++.+.+|.|+|||++.++++++||++.|++. ..+.+..||.+++.+|++.|++||.|.
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~-~~g~~~~hW~~ml~~p~~~va~WH~L~  138 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLH-TSGTERQHWEEMLDNPRRQIAMWHQLH  138 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCc-CCCcHHHHHHHHHhCCCCchhEEEECC
Confidence            8888899999999999999999999999985 578899999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.95  E-value=7.8e-28  Score=219.57  Aligned_cols=136  Identities=43%  Similarity=0.701  Sum_probs=127.7

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      .|+|.++++|.|..+.|.|.|++|+||+.++..|.+||||++++.+++....++||+++++++||+|||.|.|.|+..++
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l   80 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence            38999999999999999999999999999999999999999999887776668899999999999999999999988788


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .+.+|.|+|||++.++++++||++.|+.. ..+.+..||++++.+|++.+++||.||
T Consensus        81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~-~~g~~~~hW~~ml~~~~~~v~~WH~l~  136 (136)
T cd08406          81 QDLSLRVTVAESTEDGKTPNVGHVIIGPA-ASGMGLSHWNQMLASLRKPVAMWHPLR  136 (136)
T ss_pred             CCcEEEEEEEeCCCCCCCCeeEEEEECCC-CCChhHHHHHHHHHCCCCeeeEeeecC
Confidence            88899999999999999999999999974 678999999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.93  E-value=7.5e-26  Score=207.41  Aligned_cols=135  Identities=30%  Similarity=0.562  Sum_probs=124.2

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC-CeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~-~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      |+|.+++.|.+..+.|.|.|++|+||++++..|.+||||++++.+. +....++||++++++.||+|||.|.|+++..++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            6899999999999999999999999999999999999999999864 444567899999999999999999999998788


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      .+.+|.|+|||++.++++++||++.|++......+..||++++.+|+++|++||+|
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l  137 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL  137 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence            88899999999999999999999999986555567899999999999999999998

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.93  E-value=2e-25  Score=204.37  Aligned_cols=135  Identities=34%  Similarity=0.637  Sum_probs=123.3

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      |+|.+++.|.|..+.|+|.|++|++|+.++..|.+||||++++.++.....+++|+++++++||.|||.|.|.++..+++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            78999999999999999999999999999999999999999986655555578999999999999999999999877777


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      +..|.|+|||++..+++++||++.|+.....+....||+.|+..|+++|++||.|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l  135 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL  135 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence            7779999999999999999999999976566667899999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.93  E-value=3.1e-25  Score=203.44  Aligned_cols=135  Identities=38%  Similarity=0.650  Sum_probs=124.6

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      .|+|.+++.|.+..+.|+|.|++|+||++++ .+.+||||++.+.+++....+++|++++++.||.|||.|.|.|+..++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l   79 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL   79 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence            4899999999999999999999999999999 888999999999887666667899999999999999999999987778


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCC-CCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGD-KSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~-~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      .+..|.|+|||++.++++++||++.|+.. ...+.+..||++++.+|++.|++||+|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l  136 (137)
T cd08409          80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL  136 (137)
T ss_pred             CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence            87889999999999999999999999974 355788999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.93  E-value=3.5e-25  Score=203.13  Aligned_cols=135  Identities=53%  Similarity=0.922  Sum_probs=124.1

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      .|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.++..++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   80 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI   80 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence            48999999999999999999999999999999999999999999776655567889999999999999999999986666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      +...|.|+|||++.++++++||++.|++. ..+.+..||++|+..|++.|++||+|
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~-~~~~~~~~W~~~~~~~~~~~~~wh~~  135 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCN-ATGAELRHWSDMLASPRRPIAQWHTL  135 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCc-cCChHHHHHHHHHhCCCCeeeEEEEc
Confidence            66679999999999999999999999995 56888999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.92  E-value=6.1e-25  Score=201.54  Aligned_cols=135  Identities=68%  Similarity=1.136  Sum_probs=124.9

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.++++|.+..+.|.|.|++|+||+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.++...+
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence            58999999999999999999999999999999999999999999776666668899999999999999999999986666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      .+..|.|+|||++.++++++||++.|++.. .+.+..+|+.|...|+++|++||.|
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~~~~~~i~~Wh~l  135 (136)
T cd08404          81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCNPPRRQIAEWHML  135 (136)
T ss_pred             CCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHhCCCCeeeEEEec
Confidence            666799999999999999999999999977 7889999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.92  E-value=7.9e-25  Score=200.79  Aligned_cols=136  Identities=51%  Similarity=0.970  Sum_probs=123.5

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.++++|.+..+.|.|.|++|+||++++..|.+||||++.+.+++....+++|++++++.||.|||.|.|.++...+
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~   80 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence            58999999999999999999999999999999999999999999765444457799999999999999999999876666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .+..|.|+|||++.++++++||++.|++... +...++|++|+..|++.|++||.|+
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~~~~~~~~~~~wh~l~  136 (136)
T cd08405          81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDMLSKPRQPVAQWHRLK  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHHHhCCCCchhEEEecC
Confidence            6667999999999999999999999999654 8889999999999999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.92  E-value=1.5e-24  Score=198.45  Aligned_cols=134  Identities=50%  Similarity=0.941  Sum_probs=122.9

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      |+|.+++.|.+..+.|+|.|++|++|++++..|.+||||++++.+.+....+++|.++++++||.|||.|.|.++...+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            78999999999999999999999999999999999999999997766555678999999999999999999998766666


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      +..|.|+|||++.++++++||++.|++. ..+.+..+|++++..|++.+++||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~wh~~  134 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPN-ADGQGREHWNEMLANPRKPIAQWHQL  134 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCC-CCCchHHHHHHHHHCCCCeeeEeecC
Confidence            6679999999999999999999999985 66788999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.91  E-value=2.3e-24  Score=196.94  Aligned_cols=133  Identities=36%  Similarity=0.667  Sum_probs=121.0

Q ss_pred             ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCc
Q psy1415         488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS  567 (622)
Q Consensus       488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~  567 (622)
                      .|++++.|.+..+.|.|.|++|++|++++..|.+||||++++.+++....+++|+++++++||.|||.|.|.+...++..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            37889999999999999999999999999999999999999987655555789999999999999999999998766666


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      ..|.|+|||++..+++++||++.|++. ..+....+||+++..|++++++||.|
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~-~~~~~~~~W~~~l~~~~~~~~~wh~l  133 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGIN-AKGERLRHWLDCLKNPDKKIEAWHTL  133 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecC-CCCchHHHHHHHHhCCCCChheeecC
Confidence            779999999999999999999999996 46778899999999999999999986

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.90  E-value=2.7e-23  Score=189.96  Aligned_cols=134  Identities=56%  Similarity=0.923  Sum_probs=123.7

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      |+|.++++|.+..+.|.|.|++|+||+..+..+.+||||++++.+.+....+++|+++.++.||.|||.|.|.+....+.
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            78999999999999999999999999999989999999999998766666678999999999999999999998876555


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      ...|.|+|||++..+++++||.+.++++. .+.+..+|++|+..|++.|++||+|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~~~~~~~~wh~~  134 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLASPRKPIARWHKL  134 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhCCCCceEEeeeC
Confidence            56799999999998899999999999987 8899999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.90  E-value=2.5e-23  Score=182.76  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=105.2

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      |+|.++++|.|..+.|+|.|++|++|+ .  .|.+||||++++.+..+ ..+++|+++++|+||+|||.|.|.|+.+++.
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~   76 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL   76 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence            578999999999999999999999998 3  46699999999976444 3477999999999999999999999998999


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhh
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDV  607 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L  607 (622)
                      +.+|.|+|||+|+++++++||++.+++.+. .+.+..||.+|
T Consensus        77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            999999999999999999999999999764 57788899875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.88  E-value=1.9e-22  Score=189.97  Aligned_cols=137  Identities=31%  Similarity=0.612  Sum_probs=121.7

Q ss_pred             CCceeeeccccC------------CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeee
Q psy1415         486 RGEILLSLCWQP------------AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN  553 (622)
Q Consensus       486 ~G~l~i~l~~~~------------~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn  553 (622)
                      +|+|.++++|.|            ..|.|+|.|++|+||+..+..|.+||||++++.+++....++||++++++.||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            589999999988            55899999999999999999999999999999765544557899999999999999


Q ss_pred             cEEEEEec-CCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC------------CCcccchhhhhhcCCCCceeeEEe
Q psy1415         554 ESFVFEVP-ADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS------------SGTALTHWTDVCNSPRRQIAEWLT  620 (622)
Q Consensus       554 e~f~f~v~-~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~------------~~~~~~~W~~L~~~p~~~i~~w~~  620 (622)
                      |.|.|.+. ..++.+..|.|+|||++.++++++||++.+++...            .+.+..||+.|+.+|++.|++..+
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~  160 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP  160 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence            99999853 33555667999999999999999999999999853            578899999999999999999999


Q ss_pred             cC
Q psy1415         621 YR  622 (622)
Q Consensus       621 l~  622 (622)
                      ||
T Consensus       161 ~~  162 (162)
T cd04020         161 LR  162 (162)
T ss_pred             cC
Confidence            98

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>KOG1013|consensus

Probab=99.88  E-value=8.4e-24  Score=209.18  Aligned_cols=274  Identities=28%  Similarity=0.441  Sum_probs=226.9

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|.+.+.+.|......+..++.+|.+|..++ .++..|||++..++++..   +.+|++..+++||.|+|+..+..+
T Consensus        76 at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~-~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i  154 (362)
T KOG1013|consen   76 ATTLGALEFELLYDSESRMLDTTLDRAKGLKPMD-INGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGI  154 (362)
T ss_pred             hhhccchhhhhhhhhhhhhcceeechhcccchhh-hhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccc
Confidence            3467999999999999999999999999999999 899999999999988765   788999999999999998766545


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCcccee
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGE  453 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~  453 (622)
                      ..+......+++.|.                   |.+.+...+++|+..+++..+.+..++.-                .
T Consensus       155 ~~~~~~~K~~Rk~vc-------------------dn~~~~~~~sqGq~r~~lkKl~p~q~k~f----------------~  199 (362)
T KOG1013|consen  155 TDDDTHLKVLRKVVC-------------------DNDKKTHNESQGQSRVSLKKLKPLQRKSF----------------N  199 (362)
T ss_pred             ccchhhhhhhheeec-------------------cCcccccccCcccchhhhhccChhhcchh----------------h
Confidence            555555556666766                   77888888999999988887762221000                0


Q ss_pred             EEEeeecccccCcccccccccCc-cccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC
Q psy1415         454 VFYSLQSFETYGHSLSFCRDIQP-RNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK  532 (622)
Q Consensus       454 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~  532 (622)
                      .|+              ...+.+ +.-......+|++.+++.|.....-+.|.++++.+|..+|.+|.+||||+.++.++
T Consensus       200 ~cl--------------~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pd  265 (362)
T KOG1013|consen  200 ICL--------------EKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPD  265 (362)
T ss_pred             hhh--------------hccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCC
Confidence            011              011111 11111236789999999999999999999999999999999999999999999876


Q ss_pred             CeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCC
Q psy1415         533 GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPR  612 (622)
Q Consensus       533 ~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~  612 (622)
                      .....+++|.+.++++||.||+.|.|.+...++..+.+.|+|||++..+..+++|-+..++ ...+.-..||+..+..+.
T Consensus       266 v~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~-~rr~~v~~h~gr~~~~~~  344 (362)
T KOG1013|consen  266 VGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG-YRRGEVHKHWGRCLFDQD  344 (362)
T ss_pred             cchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc-cccchhhcCccccccccc
Confidence            6666789999999999999999999999999999999999999999998999999999886 466788899999999999


Q ss_pred             CceeeEEec
Q psy1415         613 RQIAEWLTY  621 (622)
Q Consensus       613 ~~i~~w~~l  621 (622)
                      ..+..||.|
T Consensus       345 a~~~~ss~l  353 (362)
T KOG1013|consen  345 ANFERSSGL  353 (362)
T ss_pred             ccccccccc
Confidence            999999976

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.86  E-value=9.5e-22  Score=177.53  Aligned_cols=122  Identities=29%  Similarity=0.537  Sum_probs=108.2

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~  564 (622)
                      +|+|++++.|.+..+.|+|.|++|+||++++.. |.+||||++++.+++....++||+++++++||.|||.|.|.+...+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            599999999999999999999999999999975 8999999999987655455789999999999999999999998767


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDV  607 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L  607 (622)
                      +.+..|.|+|||++.++++++||++.|+|.+.. ......||+|
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            777789999999999999999999999998543 3556778876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.86  E-value=1.1e-21  Score=176.05  Aligned_cols=120  Identities=20%  Similarity=0.303  Sum_probs=108.5

Q ss_pred             ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE-eeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR-VAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~-~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      +|++++.|.+..+.|.|.|++|+||++++..|.+||||++++.++... ..++||+++++++||+|||.|.|+|+..++.
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            689999999999999999999999999998999999999999886643 3478999999999999999999999988889


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCC--CCcccchhhhh
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKS--SGTALTHWTDV  607 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~--~~~~~~~W~~L  607 (622)
                      +.+|.|+|||++.++++++||.+.|+|.+.  .+....+||+|
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999999999999999999999999854  33468889976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.86  E-value=1.9e-21  Score=175.94  Aligned_cols=122  Identities=30%  Similarity=0.397  Sum_probs=108.4

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~  564 (622)
                      .|+|++++.|.+..+.|.|.|++|+||++++.. |.+||||++++.++.....++||++++++.||+|||.|.|.++..+
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            389999999999999999999999999999875 9999999999988665556889999999999999999999998777


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC----Ccccchhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS----GTALTHWTDV  607 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~----~~~~~~W~~L  607 (622)
                      +.+..|.|+|||++.++++++||++.|+|.+..    +....+||+|
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            777889999999999999999999999997542    3466778876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.85  E-value=3.1e-21  Score=173.31  Aligned_cols=118  Identities=31%  Similarity=0.574  Sum_probs=103.9

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNL  565 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~~~l  565 (622)
                      |+|.+++.|.  .+.|+|.|++|+||++++ .|.+||||++++.+......++||++++++.||.|||+|.|++ +..++
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l   78 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL   78 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence            8999999998  799999999999999999 9999999999998765555688999999999999999999997 54566


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhh
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDV  607 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L  607 (622)
                      .+..|.|+|||++.++++++||++.|+|.+... ....+||.|
T Consensus        79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            677899999999999999999999999986553 446778875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.85  E-value=8.4e-21  Score=166.83  Aligned_cols=105  Identities=16%  Similarity=0.349  Sum_probs=95.5

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQL  378 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l  378 (622)
                      |+|++++.|.+..+.|+|+|++|++|+ .   .|.+||||+++++++.+  +++|++.++|+||+|||+|.|. ++.+++
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~---~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l   75 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS-V---DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEES   75 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC-C---CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHh
Confidence            589999999999999999999999998 3   35599999999986443  8899999999999999999998 889999


Q ss_pred             CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .+.+|.|+||                   |+|+++++++||++.++++++.
T Consensus        76 ~~~tL~~~V~-------------------d~Drfs~~d~IG~v~l~l~~~~  107 (118)
T cd08677          76 LDGTLTLTLR-------------------CCDRFSRHSTLGELRLKLADVS  107 (118)
T ss_pred             CCcEEEEEEE-------------------eCCCCCCCceEEEEEEcccccc
Confidence            9988888888                   9999999999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.85  E-value=6e-21  Score=172.22  Aligned_cols=122  Identities=31%  Similarity=0.533  Sum_probs=106.7

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~  564 (622)
                      .|+|++++.|.+..+.|.|.|++|+||++.+. .|.+||||++++.+++....++||+++++++||.|||.|.|.+...+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   80 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ   80 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence            48999999999999999999999999998875 58899999999987665555789999999999999999999998766


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDV  607 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L  607 (622)
                      +.+..|.|+|||++.++++++||++.|+|.... ......||+|
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            777789999999999999999999999997542 4556677765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>KOG2059|consensus

Probab=99.84  E-value=5.9e-21  Score=204.47  Aligned_cols=233  Identities=17%  Similarity=0.179  Sum_probs=182.8

Q ss_pred             ccccccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEE
Q psy1415         169 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVI  248 (622)
Q Consensus       169 ~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~  248 (622)
                      ..+.|.+++.+++.+|+.+..|++||   |.-+.+  +..--.+|.++.++++|.|.|.|+|..+..+    +.|.|.||
T Consensus         3 ~~~sl~vki~E~knL~~~~~~g~~D~---yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~   73 (800)
T KOG2059|consen    3 VEQSLKVKIGEAKNLPSYGPSGMRDC---YCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVW   73 (800)
T ss_pred             cccceeEEEeecccCCCCCCCCCcCc---ceEEee--cchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEe
Confidence            34667889999999999999999999   999987  4455669999999999999999999988766    89999999


Q ss_pred             eccccCCCcceeeeccCCCCCCCCCCCCCCCccccccccccccCCCCCCCcceEEEEEEEEEC--CCCEEEEEEEEeeCC
Q psy1415         249 TENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQE--KENVLVVTVIKCRDL  326 (622)
Q Consensus       249 d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~--~~~~L~V~vi~a~~L  326 (622)
                      |.| +++|+.||++.+.-.+|..++ +.+.     |+.++.+++.   .+..|+|++.+...+  ....+...+++++++
T Consensus        74 D~d-~~~D~~IGKvai~re~l~~~~-~~d~-----W~~L~~VD~d---sEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~  143 (800)
T KOG2059|consen   74 DRD-LKRDDIIGKVAIKREDLHMYP-GKDT-----WFSLQPVDPD---SEVQGKVHLELALTEAIQSSGLVCHVLKTRQG  143 (800)
T ss_pred             ccc-cccccccceeeeeHHHHhhCC-CCcc-----ceeccccCCC---hhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence            999 999999999999999998887 4444     8888877543   445699999988866  356678888899998


Q ss_pred             CCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEE
Q psy1415         327 FIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHF  404 (622)
Q Consensus       327 ~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i  404 (622)
                      -+.+  ++.+|||+.+....+..  ..+|+++++|.||.|+|.|.|. +....-+...-.+..      ...+.-..|++
T Consensus       144 ~P~~--~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~------~~e~~~l~irv  214 (800)
T KOG2059|consen  144 LPII--NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMP------EEEDDMLEIRV  214 (800)
T ss_pred             Ccee--CCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCc------ccCCceeeEEE
Confidence            8886  66799999999843332  6799999999999999999997 443321111111111      11122345788


Q ss_pred             EEEe-ccCCCCcceeeEEEEeCCccc
Q psy1415         405 VVFS-FDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       405 ~v~d-~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ++|+ ++...+++|+|++.+++..+.
T Consensus       215 ~lW~~~~~~~~~~FlGevrv~v~~~~  240 (800)
T KOG2059|consen  215 DLWNDLNLVINDVFLGEVRVPVDVLR  240 (800)
T ss_pred             eeccchhhhhhhhhceeEEeehhhhh
Confidence            8899 555556999999999998775

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.84  E-value=1.4e-20  Score=172.96  Aligned_cols=123  Identities=30%  Similarity=0.519  Sum_probs=107.7

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP  561 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~  561 (622)
                      ....|+|.+++.|  ..+.|.|.|++|+||++++ ..|.+||||++++.+++....++||+++++++||+|||.|.|.+.
T Consensus        14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~   91 (146)
T cd04028          14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS   91 (146)
T ss_pred             CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence            4568999999999  4789999999999999874 578999999999988766666889999999999999999999997


Q ss_pred             CCCCCccEEEEEEE-EcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         562 ADNLDSVSLELLLL-DWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       562 ~~~l~~~~L~i~V~-D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                         +.+..|.|+|| |++.++++++||.+.|+|+... +.....||.|.+.
T Consensus        92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence               45667999999 6888889999999999998763 5677889999865

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.83  E-value=6.7e-20  Score=165.47  Aligned_cols=111  Identities=40%  Similarity=0.634  Sum_probs=98.9

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      +|+|++++.|.+..+.|.|.|++|+||+.++ .. |.+||||++++.|++.   ++||+++++++||+|||+|.|. ++.
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d-~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~   78 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAAD-PKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VER   78 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcC-CCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCH
Confidence            4999999999999999999999999999998 54 7899999999987763   6899999999999999999997 777


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                      .++....|.|.||                   |++.++++++||++.++|.++...
T Consensus        79 ~~l~~~~L~~~V~-------------------d~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          79 EELPTRVLNLSVW-------------------HRDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             HHhCCCEEEEEEE-------------------eCCCCCCCcEeEEEEEecCccccC
Confidence            7777667777777                   889889999999999999999733

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.83  E-value=7.2e-20  Score=165.60  Aligned_cols=122  Identities=31%  Similarity=0.551  Sum_probs=103.9

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      .|+|.+++.|.+..+.|.|.|++|+||+.++ .. |.+||||+++++|+..   ++||++++++.||+|||+|.|. ++.
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d-~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~   78 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGD-EKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEA   78 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccC-CCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCH
Confidence            3899999999999999999999999999988 44 8999999999988753   7899999999999999999998 777


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC-ceeeEEEEee
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG-STLHFVVFSF  442 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~~~l  442 (622)
                      .++....|.+.||                   |++.++++++||++.|+|+++...+ +.....|+.+
T Consensus        79 ~~l~~~~L~v~V~-------------------~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          79 DLLSSRQLQVSVW-------------------HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             HHhCCcEEEEEEE-------------------eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            7777777777777                   8888889999999999999996333 3444455443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.83  E-value=1.2e-19  Score=163.62  Aligned_cols=110  Identities=42%  Similarity=0.724  Sum_probs=97.6

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|++++.|.+..+.|.|.|++|+||...+...+.+||||++++.+++.   ++||+++++++||+|||+|.|. ++..+
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~   80 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ   80 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence            8999999999999999999999999998873358899999999987653   7899999999999999999997 77777


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      +....|.|.||                   |++..+++++||++.++++.+..
T Consensus        81 l~~~~L~~~V~-------------------d~~~~~~~~~lG~~~i~l~~~~~  114 (125)
T cd04029          81 LETRTLQLSVW-------------------HYDRFGRNTFLGEVEIPLDSWNF  114 (125)
T ss_pred             hCCCEEEEEEE-------------------ECCCCCCCcEEEEEEEeCCcccc
Confidence            76666777777                   99998999999999999999973

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>KOG1003|consensus

Probab=99.83  E-value=2e-22  Score=185.30  Aligned_cols=97  Identities=37%  Similarity=0.437  Sum_probs=93.4

Q ss_pred             eccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy1415          41 RRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAE  113 (622)
Q Consensus        41 ~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae  113 (622)
                      .+|||+||+|||+|+|+||||+++ |++++|+++.+   .++    ||||+++++++++|++|.|+++|+.|++||||||
T Consensus        79 adrK~eEVarkL~iiE~dLE~~ee-raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE  157 (205)
T KOG1003|consen   79 ADRKYEEVARKLVIIEGELERAEE-RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE  157 (205)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence            479999999999999999999999 99999999999   666    9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccc
Q psy1415         114 ARAEFAEKTVKKLQKEVDRLEVSGH  138 (622)
Q Consensus       114 ~rae~ae~~~~~l~~~~~~le~~~~  138 (622)
                      +|||||||+|.+||+++|+||+..+
T Consensus       158 ~rAE~aERsVakLeke~DdlE~kl~  182 (205)
T KOG1003|consen  158 TRAEFAERRVAKLEKERDDLEEKLE  182 (205)
T ss_pred             hhHHHHHHHHHHHcccHHHHHHhhH
Confidence            9999999999999999999999864

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.83  E-value=3.7e-20  Score=166.98  Aligned_cols=121  Identities=38%  Similarity=0.665  Sum_probs=106.9

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.+++.|.+..+.|.|.|++|+||+.++..|.+||||++++.+.+.  .+++|++++++.||.|||.|.|.++..++
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l   79 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQEL   79 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence            6999999999999999999999999999999999999999999965433  26789999999999999999999887666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC  608 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~  608 (622)
                      .+..|.|+|||++.++++++||++.|+|.++. +...+.||+|.
T Consensus        80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            66779999999999999999999999998654 55667787764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.82  E-value=5e-20  Score=166.10  Aligned_cols=121  Identities=37%  Similarity=0.663  Sum_probs=107.0

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      .|+|.+++.|.+..+.|+|.|++|+||+.++..|.+||||++++.+...  .+++|++++++.||.|||.|.|.+...++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l   79 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSEL   79 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHh
Confidence            6899999999999999999999999999999999999999999976433  36789999999999999999999876566


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhhh
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDVC  608 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~  608 (622)
                      .+..|.|+|||++.++++++||++.++|.++ .+....+|++|.
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            6667999999999999999999999999864 356778888763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=5.4e-20  Score=165.54  Aligned_cols=121  Identities=31%  Similarity=0.548  Sum_probs=106.1

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      |+|.+++.|.+..+.|+|.|++|+||+.++ ..|.+||||++++.+++....+++|++++++.||.|||.|.|.+...++
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            789999999999999999999999999998 7889999999999765444447899999999999999999999887666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhh
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDV  607 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L  607 (622)
                      ....|.|+|||++.++++++||++.++|.+. .+....+||+|
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            6677999999999999999999999999865 34566778865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.82  E-value=4.7e-20  Score=166.42  Aligned_cols=122  Identities=31%  Similarity=0.560  Sum_probs=106.2

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC-CC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-DN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~-~~  564 (622)
                      .|+|.+++.|.+..+.|+|.|++|++|+.++..+.+||||++++.+.+....+++|++++++.||.|||.|.|.+.. .+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            58999999999999999999999999999999999999999999764444457799999999999999999998643 44


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      +....|.|+|||++.++++++||++.++|.+....+..+||+|
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L  124 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPL  124 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEEC
Confidence            5556799999999999999999999999987555566788876

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.82  E-value=7.8e-20  Score=165.51  Aligned_cols=123  Identities=29%  Similarity=0.584  Sum_probs=107.9

Q ss_pred             CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415         485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN  564 (622)
Q Consensus       485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~  564 (622)
                      +.|+|.+++.|.+..+.|+|.|++|+||+.++..+.+||||++.+.+++....+++|++++++.||.|||.|.|.+...+
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~   80 (127)
T cd04030           1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE   80 (127)
T ss_pred             CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence            36999999999999999999999999999999999999999999977554456889999999999999999999998766


Q ss_pred             CCccEEEEEEEEcCCC--CCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415         565 LDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSS-GTALTHWTDV  607 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~--~~d~~LG~v~i~L~~~~-~~~~~~W~~L  607 (622)
                      +++..|.|.|||++.+  +++++||++.|+|.++. +....+||+|
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            6667799999999875  68999999999998653 3556778876

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.82  E-value=5.7e-19  Score=159.98  Aligned_cols=112  Identities=56%  Similarity=1.000  Sum_probs=98.2

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      .|+|.+++.|.+..+.|.|+|++|+||+..+ .. +.+||||++++.++++ ++||+++++++||+|||+|.|..++..+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~-~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~   80 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMD-EQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ   80 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCC-CCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence            6999999999999999999999999999988 44 8899999999976654 7899999999999999999995466666


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                      +....|.|.||                   |++.++++++||++.++|+++...
T Consensus        81 ~~~~~L~~~V~-------------------d~d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          81 LQDLSLHFAVL-------------------SFDRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             hCCCEEEEEEE-------------------EcCCCCCCceeEEEEEeccccCCC
Confidence            66656666666                   888889999999999999999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.81  E-value=1.5e-19  Score=162.30  Aligned_cols=107  Identities=29%  Similarity=0.459  Sum_probs=99.5

Q ss_pred             EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---c-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---Q-KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       302 ~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      +|++++.|.+..+.|.|.|++|+||+.++ ..+.+||||+++++|++   . .+||++++++.||+|||+|.|. ++.++
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~-~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~   79 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALS-IPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTK   79 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccc-cCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHH
Confidence            68999999999999999999999999988 68899999999999877   2 7999999999999999999998 88999


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +.+..|.|.||                   |++..+++++||++.++|+++.
T Consensus        80 L~~~~L~~~V~-------------------~~~~~~~~~~lG~~~i~L~~~~  112 (124)
T cd08680          80 LYQKTLQVDVC-------------------SVGPDQQEECLGGAQISLADFE  112 (124)
T ss_pred             hhcCEEEEEEE-------------------eCCCCCceeEEEEEEEEhhhcc
Confidence            98888888888                   8888889999999999999996

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.81  E-value=3.2e-19  Score=160.23  Aligned_cols=106  Identities=38%  Similarity=0.673  Sum_probs=94.0

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|.+++.|.  .+.|.|.|++|+||+.++  .+.+||||++++.++..   ++||++++++.||+|||+|.|.+++..+
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~--~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC--CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            8999999998  799999999999999997  68899999999987642   7899999999999999999998446666


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +....|.|.||                   |++.++++++||++.++|.++.
T Consensus        78 l~~~~L~~~V~-------------------d~d~~~~~~~lG~~~i~l~~l~  110 (122)
T cd08381          78 LQQRVLQVSVW-------------------SHDSLVENEFLGGVCIPLKKLD  110 (122)
T ss_pred             hCCCEEEEEEE-------------------eCCCCcCCcEEEEEEEeccccc
Confidence            66666767666                   8998889999999999999997

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>KOG2059|consensus

Probab=99.81  E-value=5.9e-20  Score=196.90  Aligned_cols=236  Identities=29%  Similarity=0.464  Sum_probs=177.2

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      ..|.|.|.+|+||+..+ ..|.+||||.|.+  +.. ++||.++.+++.|.|.|.|.|. ++.. +  ..|.|-||    
T Consensus         5 ~sl~vki~E~knL~~~~-~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~-F--~~l~fYv~----   73 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYG-PSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-IPRT-F--RYLSFYVW----   73 (800)
T ss_pred             cceeEEEeecccCCCCC-CCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-cCcc-e--eeEEEEEe----
Confidence            46889999999999998 7999999999999  766 9999999999999999999997 4432 2  23555555    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEEEeeecccccCccccccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCR  472 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~  472 (622)
                                     |.| +++|+.||.+.|.-.+|..+.+                  -.-|+.++..+.         
T Consensus        74 ---------------D~d-~~~D~~IGKvai~re~l~~~~~------------------~d~W~~L~~VD~---------  110 (800)
T KOG2059|consen   74 ---------------DRD-LKRDDIIGKVAIKREDLHMYPG------------------KDTWFSLQPVDP---------  110 (800)
T ss_pred             ---------------ccc-cccccccceeeeeHHHHhhCCC------------------CccceeccccCC---------
Confidence                           988 8999999999999888863332                  223444433221         


Q ss_pred             ccCccccccccCCCCceeeeccccCCc--cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCC
Q psy1415         473 DIQPRNLRIKSQGRGEILLSLCWQPAA--NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNP  550 (622)
Q Consensus       473 ~~~~~~~~~~~~~~G~l~i~l~~~~~~--g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP  550 (622)
                               ..+-+|++.+.+.+.+..  .-+...++.++++.+.+ +|.+|||+.+...+... ....+|.+++++.+|
T Consensus       111 ---------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p  179 (800)
T KOG2059|consen  111 ---------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSK-LKEKKTKVKKKTTNP  179 (800)
T ss_pred             ---------ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccch-hhccccceeeeccCc
Confidence                     234466666666554332  34667777888887766 45599999999854322 224689999999999


Q ss_pred             eeecEEEEEecCC-------------CCCccEEEEEEEE-cCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCc
Q psy1415         551 VYNESFVFEVPAD-------------NLDSVSLELLLLD-WDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQ  614 (622)
Q Consensus       551 ~wne~f~f~v~~~-------------~l~~~~L~i~V~D-~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~  614 (622)
                      .|+|.|+|.+...             +.....|.+++|| ++.+..+.|+|++.+++.... ...-..||-|...|.+.
T Consensus       180 ~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~  258 (800)
T KOG2059|consen  180 QFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGE  258 (800)
T ss_pred             chhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcc
Confidence            9999999998755             1123459999998 677777999999999997544 56678899998887653

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.81  E-value=4.1e-19  Score=160.04  Aligned_cols=109  Identities=33%  Similarity=0.614  Sum_probs=99.7

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQL  378 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l  378 (622)
                      .|+|++++.|.+..+.|.|+|++|+||+..+ ..+.+||||++.++++++ ++||+++++ .||+|||+|.|..++.+++
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~-~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l   79 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKD-RGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL   79 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchh-cCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence            6999999999999999999999999999998 788899999999887764 889999888 9999999999976788888


Q ss_pred             CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .+..|.|.||                   |++.++++++||++.++|+++.
T Consensus        80 ~~~~L~~~V~-------------------~~~~~~~~~~lG~~~i~L~~l~  111 (124)
T cd08389          80 NNMALRFRLY-------------------GVERMRKERLIGEKVVPLSQLN  111 (124)
T ss_pred             ccCEEEEEEE-------------------ECCCcccCceEEEEEEeccccC
Confidence            8878888888                   8888899999999999999996

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.81  E-value=2.9e-19  Score=161.93  Aligned_cols=110  Identities=35%  Similarity=0.634  Sum_probs=96.5

Q ss_pred             CCCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEE-EecC
Q psy1415         485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF-EVPA  562 (622)
Q Consensus       485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f-~v~~  562 (622)
                      .+|+|.+++.|.+..+.|+|.|++|+||+.++.. |.+||||++.+.+...  .+.||+++++++||.|||.|.| .+..
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~   78 (128)
T cd08388           1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPY   78 (128)
T ss_pred             CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCH
Confidence            3699999999999999999999999999999876 8999999999975433  3678999999999999999999 4655


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      .++.+..|.|+|||++.++++++||++.|+|.+.
T Consensus        79 ~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l  112 (128)
T cd08388          79 NQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA  112 (128)
T ss_pred             HHhCCCEEEEEEEEcCCCCCCceeEEEEEecccc
Confidence            5555667999999999999999999999999843

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.80  E-value=1.8e-19  Score=160.97  Aligned_cols=117  Identities=21%  Similarity=0.389  Sum_probs=99.4

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      |+|+++++|  ..+.|.|.|++|+||++++ .|.+||||+++++++.....++||++++++.||.|||.|.|.++..++.
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence            678888887  5789999999999999998 8899999999998866555677999999999999999999999766554


Q ss_pred             ccEEEEEEEEcCCCC-CCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415         567 SVSLELLLLDWDRVT-KNEVIGRLDLGGDKSS-GTALTHWTDV  607 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~-~d~~LG~v~i~L~~~~-~~~~~~W~~L  607 (622)
                      . .|.|+|||++..+ ++++||.+.|+|.++. +.....||.|
T Consensus        78 ~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          78 K-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             C-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            4 5899999998875 4789999999998654 4556777754

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.79  E-value=1.4e-18  Score=156.71  Aligned_cols=110  Identities=47%  Similarity=0.786  Sum_probs=97.1

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      +.|+|.+++.|.+..+.|.|+|++|+||+.++ ..+.+||||++++.++.. +++|++++++.||+|||+|.|. +...+
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~   78 (124)
T cd08385           1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSE   78 (124)
T ss_pred             CccEEEEEEEEeCCCCEEEEEEEEeeCCCCcc-CCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHH
Confidence            36999999999999999999999999999998 688999999999976554 8899999999999999999997 66555


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +....|.|.||                   |++..+++++||++.++++++.
T Consensus        79 l~~~~l~~~V~-------------------d~d~~~~~~~lG~~~i~l~~~~  111 (124)
T cd08385          79 LGNKTLVFSVY-------------------DFDRFSKHDLIGEVRVPLLTVD  111 (124)
T ss_pred             hCCCEEEEEEE-------------------eCCCCCCCceeEEEEEecCccc
Confidence            65556666666                   8888889999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.79  E-value=1.3e-18  Score=156.79  Aligned_cols=109  Identities=36%  Similarity=0.733  Sum_probs=97.2

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL  378 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l  378 (622)
                      .|+|++++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++ .+++|++++++.||+|+|+|.|. +...++
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l   79 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRD-FSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQEL   79 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCC-CCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHh
Confidence            5999999999999999999999999999998 78899999999997654 48999999999999999999997 666666


Q ss_pred             CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ....|.|.||                   |++.++++++||++.++++++.
T Consensus        80 ~~~~l~i~V~-------------------d~~~~~~~~~iG~~~i~l~~~~  111 (124)
T cd08387          80 PKRTLEVLLY-------------------DFDQFSRDECIGVVELPLAEVD  111 (124)
T ss_pred             CCCEEEEEEE-------------------ECCCCCCCceeEEEEEeccccc
Confidence            5556666666                   9888889999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.79  E-value=7.3e-19  Score=160.47  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=96.1

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC--CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS--GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~--~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      .|+|.+++.|.+..++|.|.|++|+||..++ .+  +.+||||+|+++++++   ++||+++++++||+|||.|.|. ++
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d-~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~   78 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQ-LKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LP   78 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccc-cCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CC
Confidence            3899999999999999999999999999887 22  4489999999988664   7899999999999999999998 88


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      .+++....|.|.|+                   |++..+++++||++.+++..
T Consensus        79 ~~~L~~~~L~~~V~-------------------d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          79 SELLAASSVELEVL-------------------NQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             HHHhCccEEEEEEE-------------------eCCCCcCcceeceEEecCcC
Confidence            88888888888887                   99999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.79  E-value=6.8e-19  Score=160.71  Aligned_cols=107  Identities=32%  Similarity=0.507  Sum_probs=97.0

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|.+++.|.+..+.|.|.|++|+||+..+ ..+.+||||++++.+++.   +.||+++++++||+|||+|.|. ++..
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~-~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~   78 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDN-GKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAI   78 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCcc-CCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHH
Confidence            4999999999999999999999999999998 789999999999987654   6789999999999999999998 8878


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      ++.+..|.|.||                   |++..+++++||++.++...
T Consensus        79 ~l~~~~l~~~V~-------------------~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          79 VLQDLSLRVTVA-------------------ESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             HhCCcEEEEEEE-------------------eCCCCCCCCeeEEEEECCCC
Confidence            888888888888                   88888999999999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=4.8e-19  Score=159.62  Aligned_cols=120  Identities=27%  Similarity=0.488  Sum_probs=105.4

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~  564 (622)
                      .|+|.+++.|.+..+.|+|+|++|+||++.+..|.+||||++.+.+...  .++||+++++ .||+|||.|.|+ +...+
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~   78 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE   78 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence            5899999999999999999999999999999999999999998876543  3678999888 999999999998 77667


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC  608 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~  608 (622)
                      +.+..|.|+|||++.++++++||++.|+|.+.. +.....||+|.
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            778889999999999999999999999998653 45667788764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG0696|consensus

Probab=99.78  E-value=1e-19  Score=185.17  Aligned_cols=176  Identities=27%  Similarity=0.469  Sum_probs=139.3

Q ss_pred             eeEEEEeeccCCCCccceeEEEeeecccccCcccc-----cccccCcccc-ccccCCCCceeeeccccCCccEEEEEEEe
Q psy1415         435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLS-----FCRDIQPRNL-RIKSQGRGEILLSLCWQPAANRFTIVVLK  508 (622)
Q Consensus       435 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~G~l~i~l~~~~~~g~L~V~I~~  508 (622)
                      ..|..+.+.+++..+..|.++|.+-.....-....     .|....|.-. ......+|.|.+.+..  ....|+|.|..
T Consensus       111 Hkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~e  188 (683)
T KOG0696|consen  111 HKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKE  188 (683)
T ss_pred             cceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcchhhcceEEEEEEe--cCceEEEEehh
Confidence            44556666777777778888877754332111111     2222222221 1345678998888765  56789999999


Q ss_pred             ecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEE
Q psy1415         509 ARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGR  588 (622)
Q Consensus       509 A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~  588 (622)
                      |+||.+||.+|.|||||++++.++.+...+++|++++.++||+|||+|+|.+...+- +..|.|+|||||+-++++|+|+
T Consensus       189 a~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGs  267 (683)
T KOG0696|consen  189 AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGS  267 (683)
T ss_pred             hccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc-cceeEEEEecccccccccccce
Confidence            999999999999999999999988777789999999999999999999999976554 4569999999999999999999


Q ss_pred             EEECCCCCCCcccchhhhhhcCCCC
Q psy1415         589 LDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       589 v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                      ..+++++++..+.+.||.|+..-.+
T Consensus       268 lSFgisEl~K~p~~GWyKlLsqeEG  292 (683)
T KOG0696|consen  268 LSFGISELQKAPVDGWYKLLSQEEG  292 (683)
T ss_pred             ecccHHHHhhcchhhHHHHhhhhcC
Confidence            9999999999999999999987544

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.78  E-value=8.7e-19  Score=158.22  Aligned_cols=121  Identities=38%  Similarity=0.652  Sum_probs=103.5

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~~~  564 (622)
                      +|+|++++.|.+..+.|+|.|++|+||+.++..|.+||||++++.+.+.  .+.+|++++++.||.|||.|.|.+ +...
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~   79 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK   79 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence            6999999999999999999999999999999999999999999864333  257999999999999999999984 3333


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC  608 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~  608 (622)
                      +.+..|.|+|||++.++++++||++.|++.++. +.....|+.|.
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            445679999999999999999999999998643 45667788764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.78  E-value=5.8e-18  Score=155.71  Aligned_cols=109  Identities=31%  Similarity=0.526  Sum_probs=91.0

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|.+++.|  ..+.|.|.|++|+||..++...+.+||||+++++++++   ++||+++++++||+|||+|.|. +
T Consensus        14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v   90 (146)
T cd04028          14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-V   90 (146)
T ss_pred             CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-E
Confidence            3457999999999  47899999999999988642568899999999998764   8899999999999999999997 4


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .   +.+..|.|.||+                  |++..+++++||++.++|+.+.
T Consensus        91 ~---l~~~~L~v~V~~------------------d~~~~~~~~~iG~~~i~L~~l~  125 (146)
T cd04028          91 S---PTGKTLQVIVWG------------------DYGRMDKKVFMGVAQILLDDLD  125 (146)
T ss_pred             c---CCCCEEEEEEEe------------------CCCCCCCCceEEEEEEEccccc
Confidence            3   344455555551                  4677788999999999999986

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.77  E-value=6.4e-18  Score=152.94  Aligned_cols=109  Identities=37%  Similarity=0.659  Sum_probs=96.9

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|.+++.|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++   .++||++++++.||+|||+|.|. +...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~   79 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCD-SSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLE   79 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCcc-CCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHH
Confidence            5999999999999999999999999999998 68899999999997654   38999999999999999999997 7777


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCC--CCcceeeEEEEeCCccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY--SRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~--~~d~~iG~~~i~l~~l~  429 (622)
                      +++...|.+.||                   |.+..  +++++||++.+++.++.
T Consensus        80 ~l~~~~l~i~v~-------------------~~~~~~~~~~~~iG~~~i~l~~l~  115 (127)
T cd04030          80 ELKRRTLDVAVK-------------------NSKSFLSREKKLLGQVLIDLSDLD  115 (127)
T ss_pred             HhcCCEEEEEEE-------------------ECCcccCCCCceEEEEEEeccccc
Confidence            776667777777                   77764  68999999999999986

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>KOG1013|consensus

Probab=99.77  E-value=4.8e-19  Score=175.64  Aligned_cols=253  Identities=23%  Similarity=0.295  Sum_probs=200.2

Q ss_pred             hhhhhcccccceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCC
Q psy1415         129 EVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYA  208 (622)
Q Consensus       129 ~~~~le~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~  208 (622)
                      +++..+-.+++-+|.+.+.+.|+.                +..-+-.+...+.++-....++..||   ||++.++|.-.
T Consensus        67 ~~~~~d~~~at~lg~~~~~~~y~~----------------~~~~~~~tl~~a~~lk~~~~~~~~d~---~~~~~llpga~  127 (362)
T KOG1013|consen   67 EVASYDSDPATTLGALEFELLYDS----------------ESRMLDTTLDRAKGLKPMDINGLADP---YVKLHLLPGAG  127 (362)
T ss_pred             cccccccchhhhccchhhhhhhhh----------------hhhhcceeechhcccchhhhhhhcch---HHhhhcccchh
Confidence            344444445777999999999998                55566666667777777778888999   99999988655


Q ss_pred             --CCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCCCCCCCCCCCCccccccc
Q psy1415         209 --TPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVN  286 (622)
Q Consensus       209 --~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~  286 (622)
                        ...+|++..|++||.|+|+-....+.......-.+++.|.|.+.+...+++|+..+.+.-+.+......  .  .|+.
T Consensus       128 kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f--~--~cl~  203 (362)
T KOG1013|consen  128 KLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSF--N--ICLE  203 (362)
T ss_pred             hhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchh--h--hhhh
Confidence              356899999999999999977766666666667899999999999999999998887777766553111  1  2222


Q ss_pred             ccccc--CCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCC
Q psy1415         287 KETVD--CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRN  361 (622)
Q Consensus       287 ~~~~~--~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~n  361 (622)
                      .....  .....-+.+|+|.+++.|......+.|.+++|.+|..+| .++-+||||+.++.++..   ++||.+.++++|
T Consensus       204 ~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssD-sng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~  282 (362)
T KOG1013|consen  204 KSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSD-SNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLN  282 (362)
T ss_pred             ccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccc-cCCCCCccceeecCCCcchhhcccCcchhccCC
Confidence            22221  112223678999999999999999999999999999999 899999999999987665   889999999999


Q ss_pred             CeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeC
Q psy1415         362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSL  425 (622)
Q Consensus       362 P~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l  425 (622)
                      |.|++.|.|. +.+.+|.+.++.+.|+                   |++..+..+++|-....+
T Consensus       283 p~fd~~~~~~-i~pgdLa~~kv~lsvg-------------------d~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  283 PEFDEEFFYD-IGPGDLAYKKVALSVG-------------------DYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             cccccccccc-CCccchhcceEEEeec-------------------ccCCCcCccCCCcccccc
Confidence            9999999887 8888998888888887                   888777888888765543

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.77  E-value=6e-18  Score=152.65  Aligned_cols=109  Identities=37%  Similarity=0.641  Sum_probs=94.7

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|.+++.|.+..+.|.|+|++|++|...+ .++.+||||++++.+++   .+++|++++++.||+|||+|.|.++...
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   80 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRD-DGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE   80 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcC-CCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence            5999999999999999999999999999998 68899999999997543   3889999999999999999999755555


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ++....|.|.||                   |++..+++++||++.++|++.
T Consensus        81 ~l~~~~l~~~V~-------------------d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          81 TLKERTLEVTVW-------------------DYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             HhCCCEEEEEEE-------------------eCCCCCCCcEeeEEEEecccc
Confidence            555556666666                   888888999999999999984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.77  E-value=7.1e-18  Score=152.24  Aligned_cols=110  Identities=43%  Similarity=0.728  Sum_probs=95.5

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL  378 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l  378 (622)
                      .|+|++++.|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++ ..++|++++++.||+|||+|.|..++.+.+
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l   80 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKD-FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL   80 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCcc-CCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence            5999999999999999999999999999998 68899999999997654 489999999999999999999964444445


Q ss_pred             CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ....|.|.||                   |++..+++++||++.++++++.
T Consensus        81 ~~~~l~~~v~-------------------d~d~~~~~~~iG~~~i~l~~l~  112 (125)
T cd08386          81 QQRVLYLQVL-------------------DYDRFSRNDPIGEVSLPLNKVD  112 (125)
T ss_pred             CCCEEEEEEE-------------------eCCCCcCCcEeeEEEEeccccc
Confidence            4445555555                   9988889999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.77  E-value=2.4e-18  Score=154.88  Aligned_cols=120  Identities=31%  Similarity=0.516  Sum_probs=103.5

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      |+|.+++.|.+..+.|+|.|++|+||+.++ ..|.+||||++++.+.+..  ..+|+++++++||.|||.|.|.+....+
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~--~~~T~v~~~~~~P~wne~f~f~i~~~~l   78 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERR--SLQSKVKRKTQNPNFDETFVFQVSFKEL   78 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCC--ceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence            789999999999999999999999999998 6889999999999765432  5689999999999999999999876666


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhh
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVC  608 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~  608 (622)
                      ....|.|.|||++..+++++||++.++|.++.. .....|++|.
T Consensus        79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            556799999999998899999999999986543 4445777763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=1.3e-17  Score=150.03  Aligned_cols=109  Identities=41%  Similarity=0.700  Sum_probs=94.4

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|++++.|.+..+.|.|.|++|+||+..+...+.+||||++++.+++.   +++|++++++.||+|||+|.|. +...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~   79 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ   79 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence            8999999999999999999999999998862367899999999976543   7899999999999999999997 66666


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +....|.|.||                   |++..+++++||++.++|+++.
T Consensus        80 l~~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~l~~l~  112 (123)
T cd08521          80 LETRTLQLSVW-------------------HHDRFGRNTFLGEVEIPLDSWD  112 (123)
T ss_pred             hCCCEEEEEEE-------------------eCCCCcCCceeeEEEEeccccc
Confidence            65555666655                   8888889999999999999996

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.76  E-value=9.6e-18  Score=158.00  Aligned_cols=113  Identities=35%  Similarity=0.602  Sum_probs=96.6

Q ss_pred             ceEEEEEEEEEC------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCee
Q psy1415         300 LGQIFFKIKYQE------------KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIY  364 (622)
Q Consensus       300 ~G~i~~~l~~~~------------~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W  364 (622)
                      +|+|.+++.|.+            ..+.|.|+|++|+||+..+ .++.+||||++++.+++   .++||++++++.||+|
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d-~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W   79 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALK-SGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW   79 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCC-CCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence            489999999999            5589999999999999998 68999999999987654   2899999999999999


Q ss_pred             eceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415         365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG  432 (622)
Q Consensus       365 ~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~  432 (622)
                      ||+|.|..+...++.+..|.|.||                   |++.++++++||++.++++++...+
T Consensus        80 nE~f~f~~~~~~~l~~~~L~i~V~-------------------d~d~~~~d~~lG~v~i~l~~~~~~~  128 (162)
T cd04020          80 NHTFVYDGVSPEDLSQACLELTVW-------------------DHDKLSSNDFLGGVRLGLGTGKSYG  128 (162)
T ss_pred             CCEEEEecCCHHHhCCCEEEEEEE-------------------eCCCCCCCceEEEEEEeCCccccCC
Confidence            999999755566665555666665                   9998889999999999999987333

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.75  E-value=1.9e-17  Score=149.14  Aligned_cols=106  Identities=18%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCC-CCeeeceeEEcccCcc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTR-NPIYNEEFTFTGITPH  376 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~-nP~W~e~f~f~~~~~~  376 (622)
                      .+|.+++.|+|..++|+|.|++|+||++++ ..+.+||||||++.++++   ++||+++++|+ ||+|||+|.|. ++.+
T Consensus         1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~-~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~   78 (135)
T cd08692           1 AELQLGTCFQAVNSRIQLQILEAQNLPSSS-TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQ   78 (135)
T ss_pred             CeEEEEeeecCcCCeEEEEEEEccCCCccc-CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCch
Confidence            378999999999999999999999999885 466789999999887665   89999999995 69999999998 6554


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      + .+..|.+.||                   |+++.+++++||++.++.+..
T Consensus        79 ~-~~v~l~v~v~-------------------d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          79 E-HGIQFLIKLY-------------------SRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             h-heeEEEEEEE-------------------eCCCCcCCceEEEEEECCccC
Confidence            3 2444444444                   999999999999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.75  E-value=1.9e-17  Score=151.84  Aligned_cols=108  Identities=34%  Similarity=0.635  Sum_probs=94.0

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||+|++.++++   .++|+++++++||.|||+|.|. +...
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~   78 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFE   78 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCccc-CCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHH
Confidence            4899999999999999999999999999998 789999999999965443   6789999999999999999997 6666


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      +++...|.|.||                   |++.++++++||++.+++...
T Consensus        79 ~l~~~~l~~~v~-------------------d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          79 QIQKVHLIVTVL-------------------DYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             HhCCCEEEEEEE-------------------eCCCCCCCceeEEEEECCccC
Confidence            665555666665                   999999999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.75  E-value=1.2e-17  Score=153.10  Aligned_cols=108  Identities=28%  Similarity=0.429  Sum_probs=97.0

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      .|+|.+++.|.+..++|.|.|++|+||..++ .++.+||||+++++++.+    ++||++++++.||+|||+|.|. ++.
T Consensus         1 ~~ei~~sL~Y~~~~~~L~V~VikarnL~~~~-~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~   78 (138)
T cd08408           1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLA-MNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VAL   78 (138)
T ss_pred             CCeEEEEeEEcCCCCeEEEEEEEecCCCccc-cCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCH
Confidence            3789999999999999999999999999998 688999999999987542    6799999999999999999998 888


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      +++....|.|.||                   |++.++++++||++.+++...
T Consensus        79 ~~l~~~~L~~~V~-------------------~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          79 FQLSEVTLMFSVY-------------------NKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             HHhCccEEEEEEE-------------------ECCCCCCCcEEEEEEECCcCC
Confidence            8888878888888                   888889999999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.74  E-value=3.3e-17  Score=147.39  Aligned_cols=110  Identities=36%  Similarity=0.732  Sum_probs=94.4

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCC
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLK  379 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~  379 (622)
                      |+|.+++.|.+..+.|.|.|++|+||+.++..++.+||||++++.+++. .++|+++++++||+|||.|.|. ++..++.
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~   79 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ   79 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence            8999999999999999999999999998862267899999999876544 7899999999999999999997 6665554


Q ss_pred             CcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         380 GSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       380 ~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      ...|.|.||                   |++..+++++||++.++|+++..
T Consensus        80 ~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~L~~l~~  111 (123)
T cd08390          80 RRTLRLSVY-------------------DVDRFSRHCIIGHVLFPLKDLDL  111 (123)
T ss_pred             ccEEEEEEE-------------------ECCcCCCCcEEEEEEEeccceec
Confidence            445555555                   88888889999999999999973

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=2.1e-17  Score=147.21  Aligned_cols=109  Identities=23%  Similarity=0.357  Sum_probs=88.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEe--CCeEeeEeeeeeccCCCCCeeecEEEEEecCC-CCCccEEEEEEEEc
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLY--KGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDW  577 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~--~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-~l~~~~L~i~V~D~  577 (622)
                      .|+|.|++|++|+..+ .|.+||||++++.+  .+....+++|+++.+++||+|||.|.|.+..+ .+....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999888 59999999999853  22333467899999999999999999999865 35566799999999


Q ss_pred             CCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      +..+++++||++.++|.+.. +.....|++|...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            98889999999999998544 3445668777443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.74  E-value=2.4e-17  Score=151.11  Aligned_cols=107  Identities=36%  Similarity=0.627  Sum_probs=94.4

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|.++++|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++.   .+||++++++.||.|+|+|.|. +...
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d-~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~   78 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMD-VSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSE   78 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccc-cCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHH
Confidence            4999999999999999999999999999998 789999999999976554   6799999999999999999997 6666


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      ++....|.|.||                   |++..+++++||++.+++..
T Consensus        79 ~~~~~~l~~~v~-------------------d~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          79 ELEDISVEFLVL-------------------DSDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             HhCCCEEEEEEE-------------------ECCCCCCCccEEEEEECCcC
Confidence            655556666666                   99988999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.73  E-value=2.5e-17  Score=150.44  Aligned_cols=112  Identities=32%  Similarity=0.518  Sum_probs=97.7

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCe--EeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPAD  563 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~--~~~~~kT~~~~~tlnP~wne~f~f~v~~~  563 (622)
                      .|+|.++++|.+..+.|+|.|++|++|+.++..|.+||||++++.+...  ...+++|+++++++||.|||.|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            6899999999999999999999999999999999999999999965432  23478999999999999999999998753


Q ss_pred             C--CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC
Q psy1415         564 N--LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       564 ~--l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~  597 (622)
                      +  ..+..|.|+|||++.++++++||++.++|.++.
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            2  345679999999999999999999999997443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.73  E-value=3.3e-17  Score=149.97  Aligned_cols=107  Identities=30%  Similarity=0.571  Sum_probs=93.2

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|.+++.|.+..+.|.|.|++|++|+..| .++.+||||++++.++..   +++|++++++.||+|||+|.|. +...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d-~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~   78 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTD-MSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEE   78 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHH
Confidence            789999999999999999999999999998 688999999999866543   6899999999999999999998 77777


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ++...|.|.||                   |++..+++++||++.++....
T Consensus        79 l~~~~l~~~V~-------------------d~d~~~~~~~iG~~~l~~~~~  110 (135)
T cd08410          79 LENVSLVFTVY-------------------GHNVKSSNDFIGRIVIGQYSS  110 (135)
T ss_pred             hCCCEEEEEEE-------------------eCCCCCCCcEEEEEEEcCccC
Confidence            76666777777                   888889999999988765433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.73  E-value=2.1e-17  Score=150.48  Aligned_cols=127  Identities=35%  Similarity=0.624  Sum_probs=109.1

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.+++.|.+  +.|+|.|++|++|+..+..+.+||||++.+.+.+....+++|+++.++.||.||+.|.|.+...+.
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~   78 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK   78 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence            589999999976  899999999999999998899999999999754444457899999999999999999999875443


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                       ...|.|+|||++..+++++||++.++|.+........||+|.+.-.+..
T Consensus        79 -~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~  127 (131)
T cd04026          79 -DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEY  127 (131)
T ss_pred             -CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCcccccc
Confidence             3469999999999889999999999998777667888999988766543

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.73  E-value=3.8e-17  Score=149.77  Aligned_cols=108  Identities=37%  Similarity=0.647  Sum_probs=94.1

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|.+++.|.+..+.|.|+|++|+||+..+ .++.+||||++++.+++.   .++|++++++.||+|||+|.|. +..+
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~   78 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMD-INGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLE   78 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccc-cCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHH
Confidence            4999999999999999999999999999988 688999999999876543   6899999999999999999997 6656


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      +++...|.|.||                   |++..+++++||++.+++.+.
T Consensus        79 ~~~~~~l~~~v~-------------------d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          79 RLRETTLIITVM-------------------DKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             HhCCCEEEEEEE-------------------ECCCCCCCcEeEEEEECCccC
Confidence            555555666666                   888888999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.72  E-value=5e-17  Score=148.38  Aligned_cols=105  Identities=35%  Similarity=0.580  Sum_probs=91.9

Q ss_pred             EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415         302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQL  378 (622)
Q Consensus       302 ~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l  378 (622)
                      +|++++.|.+..+.|.|+|++|++|+..+ .++.+||||++++.+++.   +++|+++++++||+|||+|.|. +...++
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d-~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l   78 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMD-ANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDL   78 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcC-CCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHh
Confidence            47899999999999999999999999998 688999999999976542   7899999999999999999997 666666


Q ss_pred             CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      ....|.|.||                   |++..+++++||++.++++.
T Consensus        79 ~~~~l~~~V~-------------------d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          79 AKKTLEITVW-------------------DKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCEEEEEEE-------------------eCCCCCCccEEEEEEEecCC
Confidence            5556666666                   88888899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.72  E-value=7.2e-17  Score=144.22  Aligned_cols=104  Identities=26%  Similarity=0.492  Sum_probs=87.4

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|.+++.|  ..+.|.|.|++|+||+.++  .+.+||||+++++|+..   ++||++++++.||+|||+|.|. +..++
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~--~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~   75 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN--SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERD   75 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC--CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHH
Confidence            788888888  6789999999999999987  67899999999987653   7799999999999999999997 55555


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCC-CcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS-RDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~-~d~~iG~~~i~l~~l~  429 (622)
                      +.. .|.|.||                   |++... ++++||++.+++.++.
T Consensus        76 ~~~-~l~v~V~-------------------~~~~~~~~~~~lG~~~i~l~~~~  108 (119)
T cd08685          76 YQK-RLLVTVW-------------------NKLSKSRDSGLLGCMSFGVKSIV  108 (119)
T ss_pred             hCC-EEEEEEE-------------------CCCCCcCCCEEEEEEEecHHHhc
Confidence            433 4555555                   888765 4789999999999997

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.72  E-value=4e-17  Score=149.72  Aligned_cols=107  Identities=29%  Similarity=0.479  Sum_probs=94.6

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|++++.|.+..+.|.|.|++|+||+..+  .+.+||||++++.++++   ++||++++++.||+|||+|.|. ++.+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~--~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~   77 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD--HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSR   77 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc--CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHH
Confidence            4999999999999999999999999999887  56799999999987654   6799999999999999999997 7878


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ++....|.|.|+                   |.+..+++++||++.++....
T Consensus        78 ~l~~~~L~~~V~-------------------~~~~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          78 QLDTASLSLSVM-------------------QSGGVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             HhCccEEEEEEE-------------------eCCCCCCcceEEEEEECCccc
Confidence            887777777777                   888888999999999986543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.72  E-value=4.3e-17  Score=147.39  Aligned_cols=106  Identities=27%  Similarity=0.442  Sum_probs=90.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC---CCCccEEEEEEEEcC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---NLDSVSLELLLLDWD  578 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~---~l~~~~L~i~V~D~d  578 (622)
                      ++|+|++|+||+.++..|.+||||++.+.  +   .+++|+++++++||.|||.|.|.++..   +.....|.|.|||++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~--~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~   75 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG--K---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN   75 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC--C---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence            57999999999999999999999999983  2   266899999999999999999999752   234556999999999


Q ss_pred             CCCCCceeEEEEECCCCCC---CcccchhhhhhcCCC
Q psy1415         579 RVTKNEVIGRLDLGGDKSS---GTALTHWTDVCNSPR  612 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~~p~  612 (622)
                      .+++|++||++.|+|.+..   +....+||+|.+.++
T Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~  112 (126)
T cd08682          76 LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG  112 (126)
T ss_pred             ccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC
Confidence            9999999999999998644   456688999987554

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.71  E-value=5.5e-17  Score=144.83  Aligned_cols=105  Identities=19%  Similarity=0.308  Sum_probs=88.6

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      |.|+|+|++|++++..+ .|.+||||++.+  ++.   +.+|+++.+ +.||.|||.|.|.+....   ..|.|+|||+|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l--g~~---~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d   72 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV--GHA---VYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDER   72 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE--CCE---EEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeCC
Confidence            78999999999998877 799999999999  332   558999876 799999999999997432   35999999999


Q ss_pred             CCCCCceeEEEEECCCC-C-CCcccchhhhhhcCCCC
Q psy1415         579 RVTKNEVIGRLDLGGDK-S-SGTALTHWTDVCNSPRR  613 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~-~-~~~~~~~W~~L~~~p~~  613 (622)
                      .+++|++||++.|++.. . .+...+.||+|.+..++
T Consensus        73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~  109 (121)
T cd04016          73 AFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE  109 (121)
T ss_pred             CCcCCceEEEEEEECchhccCCCCccccEeCcCccCC
Confidence            99999999999999963 3 45678999999885544

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.71  E-value=8.8e-17  Score=147.00  Aligned_cols=106  Identities=34%  Similarity=0.596  Sum_probs=92.2

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++.   .++|++++++.||.|+|+|.|. +..+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d-~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~   78 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMD-ITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPEN   78 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccc-cCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHH
Confidence            789999999999999999999999999998 789999999999875443   7899999999999999999997 66665


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      +....|.|.||                   |++..+++++||++.+++..
T Consensus        79 ~~~~~l~~~v~-------------------d~~~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          79 VDNVSLIIAVV-------------------DYDRVGHNELIGVCRVGPNA  109 (134)
T ss_pred             hCCCEEEEEEE-------------------ECCCCCCCceeEEEEECCCC
Confidence            55545666666                   99999999999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=1.5e-16  Score=145.18  Aligned_cols=110  Identities=36%  Similarity=0.645  Sum_probs=92.7

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEccc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      +.|+|.++++|.+..+.|.|.|++|++|+..+ .++.+||||+|++.+..     ..+||+++++++||+|||+|.|. +
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~-~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i   78 (133)
T cd04009           1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLD-SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-V   78 (133)
T ss_pred             CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcC-CCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-e
Confidence            36999999999999999999999999999988 68899999999996543     38999999999999999999997 4


Q ss_pred             Ccc--cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPH--QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~--~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...  ++....                   |.++|||++.++++++||++.++|+++.
T Consensus        79 ~~~~~~~~~~~-------------------l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          79 PPEQCSVEGAL-------------------LLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             chhhcccCCCE-------------------EEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            332  122334                   4455559999989999999999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.70  E-value=1.6e-16  Score=143.66  Aligned_cols=91  Identities=32%  Similarity=0.519  Sum_probs=76.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCc---ccCCCcEEEEEEEeecc
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP---HQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~---~~l~~~~L~~~V~d~d~  392 (622)
                      ++|+|++|+||+.++ .+|.+||||+|++  ++.++||+++++++||+|||+|.|. +..   ++.....|.|.||    
T Consensus         1 ~~V~V~~A~~L~~~d-~~g~~dpYv~v~l--~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~----   72 (126)
T cd08682           1 VQVTVLQARGLLCKG-KSGTNDAYVIIQL--GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVM----   72 (126)
T ss_pred             CEEEEEECcCCcCCC-CCcCCCceEEEEE--CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEE----
Confidence            478999999999998 7889999999999  6778999999999999999999997 432   1233344555555    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |++.++++++||++.++++++.
T Consensus        73 ---------------d~~~~~~d~~iG~~~i~l~~l~   94 (126)
T cd08682          73 ---------------HRNLLGLDKFLGQVSIPLNDLD   94 (126)
T ss_pred             ---------------EccccCCCceeEEEEEEHHHhh
Confidence                           9988889999999999999986

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.70  E-value=3.5e-16  Score=140.81  Aligned_cols=110  Identities=37%  Similarity=0.680  Sum_probs=94.2

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      .|+|.+++.|.+..+.|.|.|++|++|+..+ ..+.+||||++++.++..   +++|++++++.||+|||+|.|......
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~   79 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMD-ANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE   79 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCC-CCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence            4899999999999999999999999999988 678999999999876542   899999999999999999999535545


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      ++.+..+.|.||                   |++.. ++++||++.++++++..
T Consensus        80 ~~~~~~l~~~v~-------------------d~~~~-~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          80 DIQRKTLRLLVL-------------------DEDRF-GNDFLGETRIPLKKLKP  113 (123)
T ss_pred             HhCCCEEEEEEE-------------------EcCCc-CCeeEEEEEEEcccCCC
Confidence            555555666666                   88887 88999999999999973

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.70  E-value=1.2e-16  Score=143.96  Aligned_cols=111  Identities=31%  Similarity=0.564  Sum_probs=96.2

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN  564 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~  564 (622)
                      .|+|.+++.|.+..+.|+|.|++|++|++.+..+.+||||++.+.++.....+.+|++++++.||.||+.|.|. +...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            48999999999999999999999999999998899999999999765444457899999999999999999996 43334


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~  597 (622)
                      +.+..|.|+|||++.+ .+++||.+.++|.++.
T Consensus        81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~  112 (123)
T cd04035          81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLK  112 (123)
T ss_pred             hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCC
Confidence            4455799999999988 8999999999997554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.69  E-value=8.5e-17  Score=148.80  Aligned_cols=109  Identities=23%  Similarity=0.409  Sum_probs=91.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec-------------CCCCCc
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP-------------ADNLDS  567 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~-------------~~~l~~  567 (622)
                      .|+|.|++|+||+.  .+|.+||||++++.++.....+++|+++++++||.|||.|.|.+.             ..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999988  578999999999976543444779999999999999999999995             224445


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEECCCCCCC--cccchhhhhhcCC
Q psy1415         568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSSG--TALTHWTDVCNSP  611 (622)
Q Consensus       568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~--~~~~~W~~L~~~p  611 (622)
                      ..|.|.|||++.+++|+|||++.|+|..+..  .....||.|....
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            6799999999998899999999999986554  4678999997653

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=3.1e-16  Score=139.65  Aligned_cols=96  Identities=27%  Similarity=0.395  Sum_probs=78.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeC----CC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP----DK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS  389 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~----~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d  389 (622)
                      .|+|.|++|++|+..+  .|.+||||+|++..    .. ++++|+++.+++||+|||+|.|.+.....+....|.|.|| 
T Consensus         1 kL~V~Vi~A~~L~~~d--~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~-   77 (120)
T cd08395           1 KVTVKVVAANDLKWQT--TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVK-   77 (120)
T ss_pred             CEEEEEEECcCCCccc--CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE-
Confidence            4889999999999887  48999999999852    22 2679999999999999999999843333445555666666 


Q ss_pred             eccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         390 FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       390 ~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                                        |++..+++++||++.++++++...
T Consensus        78 ------------------D~d~~~~dd~IG~~~l~l~~~~~~  101 (120)
T cd08395          78 ------------------DYCFARDDRLVGVTVLQLRDIAQA  101 (120)
T ss_pred             ------------------EecccCCCCEEEEEEEEHHHCcCC
Confidence                              888878899999999999999833

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.69  E-value=8.4e-17  Score=141.90  Aligned_cols=103  Identities=31%  Similarity=0.544  Sum_probs=87.9

Q ss_pred             EEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         502 FTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      |+|.|++|++|++++. .|.+||||+++++  +   .++||+++++++||.| ||.|.|.++...+.+..|.|+|||++.
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~   75 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG--S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT   75 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC--C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence            5799999999999984 7899999999983  2   3778999999999999 999999998766655679999999999


Q ss_pred             CCCCceeEEEEECCCCCCC----cccchhhhhhc
Q psy1415         580 VTKNEVIGRLDLGGDKSSG----TALTHWTDVCN  609 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~~----~~~~~W~~L~~  609 (622)
                      ++++++||++.+++..+..    .....||.|++
T Consensus        76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            9999999999999975433    34667887765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.69  E-value=3e-16  Score=142.10  Aligned_cols=93  Identities=38%  Similarity=0.537  Sum_probs=78.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      .|.|.|++|++|...+ .++.+||||++++  +++.++|++++++.||+|||.|.|.+..+..+....|.|.||      
T Consensus         1 ~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~--~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~------   71 (127)
T cd04022           1 KLVVEVVDAQDLMPKD-GQGSSSAYVELDF--DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVY------   71 (127)
T ss_pred             CeEEEEEEeeCCCCCC-CCCCcCcEEEEEE--CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEe------
Confidence            3789999999999998 6889999999999  667889999999999999999999744344444445666665      


Q ss_pred             CCCCCcceEEEEEeccCCC-CcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYS-RDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~-~d~~iG~~~i~l~~l~  429 (622)
                                   |.+.++ ++++||++.++++++.
T Consensus        72 -------------d~~~~~~~d~~lG~v~i~l~~l~   94 (127)
T cd04022          72 -------------NDRRSGRRRSFLGRVRISGTSFV   94 (127)
T ss_pred             -------------eCCCCcCCCCeeeEEEEcHHHcC
Confidence                         888776 7999999999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.68  E-value=1.1e-16  Score=143.81  Aligned_cols=101  Identities=18%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             EEEEEEEeecC---CCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         501 RFTIVVLKARN---LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       501 ~L~V~I~~A~~---L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      .|.|.|++|++   |+.+|..|.+||||.+.+  +++   +.||+++++++||.|||+|.|.+....   ..|.|+|||+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~~---~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~   72 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GPK---WVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDN   72 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEE--CCE---EeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEEC
Confidence            38999999999   888999999999999998  332   568999999999999999999997432   2599999999


Q ss_pred             CCCC------CCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         578 DRVT------KNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       578 d~~~------~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      +.++      +|++||++.|+|.... +....+||+|..
T Consensus        73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence            8874      8999999999987654 566789999984

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG0696|consensus

Probab=99.68  E-value=2.7e-17  Score=167.64  Aligned_cols=116  Identities=35%  Similarity=0.715  Sum_probs=103.6

Q ss_pred             ccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeec
Q psy1415         290 VDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNE  366 (622)
Q Consensus       290 ~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e  366 (622)
                      ..+..+..+.+|+|.+.++.  ....|.|.|.+|+||.++| .+|.|||||++.+.|+.+   ++||++++.++||+|||
T Consensus       158 slCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMD-pNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE  234 (683)
T KOG0696|consen  158 SLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE  234 (683)
T ss_pred             cccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccC-CCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence            45677888899999998887  6789999999999999999 899999999999998765   89999999999999999


Q ss_pred             eeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       367 ~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +|.|. ..+                    .|.++.|.+||||||+.+++||+|..++.+++|.
T Consensus       235 tftf~-Lkp--------------------~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~  276 (683)
T KOG0696|consen  235 TFTFK-LKP--------------------SDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ  276 (683)
T ss_pred             eeEEe-ccc--------------------ccccceeEEEEecccccccccccceecccHHHHh
Confidence            99996 332                    4566778888889999999999999999999997

>KOG1030|consensus

Probab=99.68  E-value=1.7e-16  Score=144.94  Aligned_cols=98  Identities=28%  Similarity=0.353  Sum_probs=84.1

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .|.|+|.|.+|.||...|..+++||||.+.+++.     +.||+++++++||+|||.|+|.|..+.   ..|.++|||+|
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D   76 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTRVVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKD   76 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeeeeecCCCCCcccceEEEEecCCC---ceEEEEEEeCC
Confidence            5789999999999999998899999999999433     668999999999999999999998543   34999999999


Q ss_pred             CCCCCceeEEEEECCCCCCCcccchhh
Q psy1415         579 RVTKNEVIGRLDLGGDKSSGTALTHWT  605 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~~~~~~~W~  605 (622)
                      .+++|||||.++|+|... -.....||
T Consensus        77 ~fs~dD~mG~A~I~l~p~-~~~~~~~~  102 (168)
T KOG1030|consen   77 TFSSDDFMGEATIPLKPL-LEAQKMDY  102 (168)
T ss_pred             CCCcccccceeeeccHHH-HHHhhhhc
Confidence            999999999999999533 34444555

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=9.8e-17  Score=148.67  Aligned_cols=108  Identities=38%  Similarity=0.588  Sum_probs=90.5

Q ss_pred             EEEEEEEeecCCCCCCCCC--------------CCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTG--------------LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD  566 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g--------------~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~  566 (622)
                      .|.|+|++|++|+.+|..+              .+||||++.+  ++.   +.+|+++++++||+|||.|.|++..+...
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~--~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF--AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLC   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE--CCE---eeecceEcCCCCCCcceEEEEEeeCCCcC
Confidence            3789999999999998554              6899999998  443   45899999999999999999997654443


Q ss_pred             ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCccc--------chhhhhhcCCCCc
Q psy1415         567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL--------THWTDVCNSPRRQ  614 (622)
Q Consensus       567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~--------~~W~~L~~~p~~~  614 (622)
                       ..|.|+|||+|..++|++||++.|++.++...+.        .+|+.|++.|++-
T Consensus        76 -~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          76 -ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             -CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence             3599999999999999999999999976554443        5899999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=1.4e-16  Score=140.78  Aligned_cols=105  Identities=27%  Similarity=0.466  Sum_probs=87.4

Q ss_pred             cEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC-CccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l-~~~~L~i~V~D~  577 (622)
                      |.|+|+|++|++|+.++.. |.+||||++++...+.  .+.+|+++++++||.|||.|.|.+...++ ....|.|+|||+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~   78 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS   78 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence            6899999999999999988 9999999999855442  35799999999999999999998875543 245699999999


Q ss_pred             CCCCCCceeEEEEECCCCCCCcccchhhhhh
Q psy1415         578 DRVTKNEVIGRLDLGGDKSSGTALTHWTDVC  608 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~  608 (622)
                      +.+++|++||++.+++.++.  ....|+++.
T Consensus        79 d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~  107 (111)
T cd04041          79 DRFTADDRLGRVEIDLKELI--EDRNWMGRR  107 (111)
T ss_pred             CCCCCCCcceEEEEEHHHHh--cCCCCCccc
Confidence            99999999999999997554  344566553

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.67  E-value=5.5e-16  Score=141.84  Aligned_cols=96  Identities=27%  Similarity=0.455  Sum_probs=83.4

Q ss_pred             ccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       495 ~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      ..+..|.|+|.|++|++|++++..|.+||||++.+  +.   .+++|+++++++||.||+.|.|.+..  .....|.|+|
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~--~~---~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V   82 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM--GS---QEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITV   82 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE--CC---EeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEE
Confidence            35567999999999999999999999999999998  22   26799999999999999999999863  3344699999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCC
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~  597 (622)
                      ||++.+++|++||++.++|.++.
T Consensus        83 ~D~d~~~~d~~lG~~~i~l~~l~  105 (136)
T cd08375          83 FDRDFFSPDDFLGRTEIRVADIL  105 (136)
T ss_pred             EECCCCCCCCeeEEEEEEHHHhc
Confidence            99999999999999999997543

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.66  E-value=1.3e-15  Score=135.90  Aligned_cols=89  Identities=15%  Similarity=0.256  Sum_probs=73.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|.|+|++|++|+..+  .|++||||++.+  ++++++|+++.+ +.||+|||+|.|. +...   ...|.|.||    
T Consensus         2 g~L~v~v~~Ak~l~~~~--~g~sDPYv~i~l--g~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~----   69 (121)
T cd04016           2 GRLSITVVQAKLVKNYG--LTRMDPYCRIRV--GHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIF----   69 (121)
T ss_pred             cEEEEEEEEccCCCcCC--CCCCCceEEEEE--CCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEE----
Confidence            68999999999987765  689999999999  778889999875 7999999999997 4322   124555555    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc-cc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~-l~  429 (622)
                                     |+|.+++|++||.+.+++.. +.
T Consensus        70 ---------------d~d~~~~dd~iG~~~i~l~~~~~   92 (121)
T cd04016          70 ---------------DERAFTMDERIAWTHITIPESVF   92 (121)
T ss_pred             ---------------eCCCCcCCceEEEEEEECchhcc
Confidence                           99999999999999999964 44

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.66  E-value=5.1e-15  Score=167.60  Aligned_cols=253  Identities=25%  Similarity=0.408  Sum_probs=173.3

Q ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         312 KENVLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d-~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      +.|.+.+.|.+|++|...+ ..++..|||+.+.. .+....||++.+++.||+|||+|... +.                
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~-~~r~~gkT~v~~nt~nPvwNEt~Yi~-ln----------------  495 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF-SDRVIGKTRVKKNTLNPVWNETFYIL-LN----------------  495 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEe-ccccCCccceeeccCCccccceEEEE-ec----------------
Confidence            4588999999999998876 24788999999996 23337799999999999999999764 21                


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEEEee------------
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSL------------  458 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l------------  458 (622)
                            .++.+|.++|||.+...+|+.+|.+.++|+.+..+....+.....+   ......|++.|.+            
T Consensus       496 ------s~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~---~~~k~vGrL~yDl~ffp~~e~k~~~  566 (1227)
T COG5038         496 ------SFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL---RNTKNVGRLTYDLRFFPVIEDKKEL  566 (1227)
T ss_pred             ------ccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee---ccCccceEEEEeeeeecccCCcccc
Confidence                  2334566666699998999999999999998875533322111111   0011112222221            


Q ss_pred             -------------------ecccccCcc----------c-------------ccccc----------------------c
Q psy1415         459 -------------------QSFETYGHS----------L-------------SFCRD----------------------I  474 (622)
Q Consensus       459 -------------------~~~~~~~~~----------~-------------~~~~~----------------------~  474 (622)
                                         .........          +             .....                      .
T Consensus       567 ~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~  646 (1227)
T COG5038         567 KGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVT  646 (1227)
T ss_pred             ccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEe
Confidence                               110000000          0             00000                      0


Q ss_pred             Ccc-------------------cc-----ccccCCCCceeeeccccC---------------CccEEEEEEEeecCCCCC
Q psy1415         475 QPR-------------------NL-----RIKSQGRGEILLSLCWQP---------------AANRFTIVVLKARNLPKM  515 (622)
Q Consensus       475 ~~~-------------------~~-----~~~~~~~G~l~i~l~~~~---------------~~g~L~V~I~~A~~L~~~  515 (622)
                      .+.                   ..     -....++|.|.++..|.|               ..|.++|.|..|.+|...
T Consensus       647 ~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~  726 (1227)
T COG5038         647 FDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNE  726 (1227)
T ss_pred             cccccCceeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhccccc
Confidence            000                   00     001134577777765544               447899999999999988


Q ss_pred             CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCC
Q psy1415         516 DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDK  595 (622)
Q Consensus       516 d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~  595 (622)
                      ...|.+|||+++.+  ++  ..++||-....++||.||+..+.++..+.   ..|.+.++|++..+.|.+||.+.+++.+
T Consensus       727 i~g~~~dPya~v~~--n~--~~k~rti~~~~~~npiw~~i~Yv~v~sk~---~r~~l~~~~~~~sgddr~lg~~~i~vsn  799 (1227)
T COG5038         727 IPGGKSDPYATVLV--NN--LVKYRTIYGSSTLNPIWNEILYVPVTSKN---QRLTLECMDYEESGDDRNLGEVNINVSN  799 (1227)
T ss_pred             ccCcccccceEEEe--cc--eeEEEEecccCccccceeeeEEEEecCCc---cEEeeeeecchhccccceeceeeeeeee
Confidence            88999999999988  33  35889999999999999999999998652   2388889999999999999999999886


Q ss_pred             CCC
Q psy1415         596 SSG  598 (622)
Q Consensus       596 ~~~  598 (622)
                      ...
T Consensus       800 ~~~  802 (1227)
T COG5038         800 VSK  802 (1227)
T ss_pred             eee
Confidence            554

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.66  E-value=1.4e-15  Score=138.74  Aligned_cols=106  Identities=37%  Similarity=0.608  Sum_probs=92.5

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|++++.|.+..+.|.|.|++|+||+..+ ..+.+||||++++.+++.   .++|++++++.||.|||+|.|. +...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~   78 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSD-GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQ   78 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCcc-CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHH
Confidence            789999999999999999999999999988 688999999999976543   6799999999999999999997 66655


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      +....|.|.||                   |.+..+++++||++.+++++
T Consensus        79 l~~~~l~~~v~-------------------d~~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          79 LEEVSLVITVV-------------------DKDSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             hCCcEEEEEEE-------------------ecCCCCCCceeEEEEECCCC
Confidence            54555666666                   88887889999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.65  E-value=3e-16  Score=142.13  Aligned_cols=105  Identities=29%  Similarity=0.479  Sum_probs=89.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-CCCccEEEEEEEEcCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDR  579 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-~l~~~~L~i~V~D~d~  579 (622)
                      .|+|.|++|++|++.+..|.+||||++++.  +.   +++|+++.++.||.|||.|.|.+... .+.+..|.|+|||++.
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~~---~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~   75 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD--GQ---KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR   75 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CE---EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence            489999999999999999999999999983  32   56899999999999999999998743 2334569999999998


Q ss_pred             CC-CCceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415         580 VT-KNEVIGRLDLGGDKSS--GTALTHWTDVCNS  610 (622)
Q Consensus       580 ~~-~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~  610 (622)
                      ++ ++++||++.|++..+.  +....+||+|...
T Consensus        76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~  109 (127)
T cd04022          76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR  109 (127)
T ss_pred             CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence            86 8999999999998654  4667889999753

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.65  E-value=8.3e-16  Score=137.97  Aligned_cols=105  Identities=23%  Similarity=0.370  Sum_probs=90.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .|+|.|++|++|+..+..|.+||||++++  ++.  ..++|+++.++.||.|||.|.|.+..  .. ..|.|+|||++..
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~--~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~--~~-~~l~~~v~D~d~~   73 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGK--TVYKSKTIYKNLNPVWDEKFTLPIED--VT-QPLYIKVFDYDRG   73 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEE--CCE--EEEEeeeccCCCCCccceeEEEEecC--CC-CeEEEEEEeCCCC
Confidence            37899999999999999999999999998  332  26789999999999999999999863  23 4599999999999


Q ss_pred             CCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415         581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR  612 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~  612 (622)
                      +++++||++.+++.++. +.....|++|.+..+
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~  106 (121)
T cd04042          74 LTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS  106 (121)
T ss_pred             CCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC
Confidence            99999999999997655 567788999987665

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=5e-16  Score=144.15  Aligned_cols=107  Identities=30%  Similarity=0.513  Sum_probs=90.0

Q ss_pred             ccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE------------------------eeEeeeeeccCCCCC
Q psy1415         495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR------------------------VAKKKTHVKKRTLNP  550 (622)
Q Consensus       495 ~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~------------------------~~~~kT~~~~~tlnP  550 (622)
                      ..|+.+.|+|.|++|++|.++|..|.+||||++.+.+....                        ...++|.++.+++||
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            46778899999999999999999999999999998543211                        124789999999999


Q ss_pred             eeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhh
Q psy1415         551 VYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       551 ~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      .|||.|.|.+..  +.+..|.|+|||++    +++||++.++++++.+.+.++||.|
T Consensus       103 ~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            999999999863  34456999999987    8899999999987777778888875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>KOG1030|consensus

Probab=99.64  E-value=8.9e-16  Score=140.20  Aligned_cols=91  Identities=43%  Similarity=0.608  Sum_probs=80.7

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      .|.|.|.|++|.||..+| +.++|||||.+.+  ++++.||+++++++||+|||.|.|.+.                   
T Consensus         5 vGLL~v~v~~g~~L~~rD-~~~sSDPyVVl~l--g~q~lkT~~v~~n~NPeWNe~ltf~v~-------------------   62 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRD-FLGSSDPYVVLEL--GNQKLKTRVVYKNLNPEWNEELTFTVK-------------------   62 (168)
T ss_pred             ceEEEEEEEeecCeeeec-cccCCCCeEEEEE--CCeeeeeeeecCCCCCcccceEEEEec-------------------
Confidence            478999999999999999 6699999999999  889999999999999999999999632                   


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                          |.+.+|++.|||+|.++.||+||.+.|+|..+.
T Consensus        63 ----d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~   95 (168)
T KOG1030|consen   63 ----DPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLL   95 (168)
T ss_pred             ----CCCceEEEEEEeCCCCCcccccceeeeccHHHH
Confidence                344556666669999999999999999999886

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.64  E-value=6.8e-16  Score=138.10  Aligned_cols=109  Identities=28%  Similarity=0.429  Sum_probs=92.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|++|++|++.+..|.+||||++++.+.+  ..+++|++++++.||.|||.|.|.+....  ...|.|+|||++.+ 
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-
Confidence            78999999999999988999999999985432  23679999999999999999999987542  33599999999998 


Q ss_pred             CCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415         582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i  615 (622)
                      ++++||++.+++..+. +.....|++|...+.+.+
T Consensus        77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l  111 (119)
T cd04036          77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEEL  111 (119)
T ss_pred             CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceE
Confidence            8999999999997644 567788999988766655

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.6e-15  Score=135.80  Aligned_cols=115  Identities=22%  Similarity=0.382  Sum_probs=99.3

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      |.|+|.|++|++|+..+..|.+||||++.+  ++.  .+++|.++.++.||.|||.|.|.+...   +..|.|+|||++.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~--~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~   73 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV--NGI--VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEK   73 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEE--CCE--EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCC
Confidence            579999999999999999999999999998  333  367899999999999999999988643   2369999999999


Q ss_pred             CCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      .+++++||++.+++.++.......||.|+++-.....+...|
T Consensus        74 ~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  115 (120)
T cd04045          74 VGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSL  115 (120)
T ss_pred             CCCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeEeecc
Confidence            999999999999998887778899999999876666665554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.64  E-value=9.5e-16  Score=136.43  Aligned_cols=106  Identities=34%  Similarity=0.458  Sum_probs=90.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .++|.|++|++|+.++..|.+||||++++  ++   .+.+|++++++.||.|||.|.|.+...  .+..|.|+|||++.+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~   73 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL--GN---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG   73 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEE--CC---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC
Confidence            37899999999999999999999999998  33   257899999999999999999998744  244699999999999


Q ss_pred             CCCceeEEEEECCCCCC-CcccchhhhhhcCCCC
Q psy1415         581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRR  613 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~  613 (622)
                      +++++||++.++|.+.. +.....|++|.+..|+
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~  107 (116)
T cd08376          74 KKDEFIGRCEIDLSALPREQTHSLELELEDGEGS  107 (116)
T ss_pred             CCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcE
Confidence            99999999999997543 4667889999876443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.63  E-value=1.1e-15  Score=136.57  Aligned_cols=104  Identities=25%  Similarity=0.403  Sum_probs=87.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      |.|+|.|++|++|++.+..|.+||||++.+.+     .+++|+++. ++.||.|||.|.|.+..+.  ...|.|+|||++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~   73 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDDD   73 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCC
Confidence            67999999999999999999999999999833     256788775 4799999999999998542  346999999999


Q ss_pred             CCCCCceeEEEEECCCCC-CCcccchhhhhhcCC
Q psy1415         579 RVTKNEVIGRLDLGGDKS-SGTALTHWTDVCNSP  611 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~~~p  611 (622)
                      ..+ +++||++.+++.++ .+....+||+|....
T Consensus        74 ~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  106 (118)
T cd08681          74 KRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG  106 (118)
T ss_pred             CCC-CcceEEEEEecHHHhhcCCCCCcEEeccCC
Confidence            876 99999999999864 345679999998653

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=2.3e-15  Score=131.55  Aligned_cols=99  Identities=29%  Similarity=0.355  Sum_probs=81.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |.|.|++|++|+..+..|.+||||++++  ++   .+++|+++.++.||.|||.|.|.+..+..  ..|.|+|||++.  
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~--~~l~v~v~d~~~--   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTV--GK---TTQKSKVKERTNNPVWEEGFTFLVRNPEN--QELEIEVKDDKT--   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEE--CC---EEEeCccccCCCCCcccceEEEEeCCCCC--CEEEEEEEECCC--
Confidence            7899999999999998999999999999  33   36789999999999999999999985433  359999999876  


Q ss_pred             CCceeEEEEECCCCCCC---cccchhhhhhcC
Q psy1415         582 KNEVIGRLDLGGDKSSG---TALTHWTDVCNS  610 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~~---~~~~~W~~L~~~  610 (622)
                       +++||++.++|.++..   ...+.||+|.++
T Consensus        73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             -CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence             8899999999974332   235667776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.63  E-value=5.4e-15  Score=132.60  Aligned_cols=89  Identities=25%  Similarity=0.471  Sum_probs=73.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|.|++|+||+.++..+|.+||||++++  +++ .++|+++++|+||.|||+|.|. +...   ...|.|.||      
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~------   69 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIY------   69 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEE------
Confidence            67899999999987424678999999999  444 7999999999999999999997 4322   124555555      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |++..+++++||.+.++++++.
T Consensus        70 -------------d~~~~~~~~~iG~~~i~l~~l~   91 (121)
T cd08401          70 -------------DRDVLRRDSVIGKVAIKKEDLH   91 (121)
T ss_pred             -------------ECCCCCCCceEEEEEEEHHHcc
Confidence                         9999899999999999999987

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.62  E-value=1.9e-15  Score=133.44  Aligned_cols=95  Identities=35%  Similarity=0.546  Sum_probs=78.1

Q ss_pred             CEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC-CCcEEEEEEEee
Q psy1415         314 NVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL-KGSTLHFVVFSF  390 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-~~~~L~~~V~d~  390 (622)
                      |.|.|+|++|++|+..+ .. +.+||||+|++.+.+ ..++|+++++++||+|||.|.|. +...++ ....        
T Consensus         1 G~L~V~v~~a~~L~~~d-~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~--------   70 (111)
T cd04041           1 GVLVVTIHRATDLPKAD-FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGER--------   70 (111)
T ss_pred             CEEEEEEEEeeCCCccc-CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCE--------
Confidence            57999999999999998 56 899999999986443 38899999999999999999996 333322 2233        


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                 |.++|||++..+++++||++.+++.++.
T Consensus        71 -----------l~~~V~d~d~~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          71 -----------LSCRLWDSDRFTADDRLGRVEIDLKELI   98 (111)
T ss_pred             -----------EEEEEEeCCCCCCCCcceEEEEEHHHHh
Confidence                       4455559999999999999999999997

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.62  E-value=5.6e-15  Score=132.79  Aligned_cols=89  Identities=29%  Similarity=0.482  Sum_probs=75.0

Q ss_pred             EEEEEEEEeeC---CCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         315 VLVVTVIKCRD---LFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       315 ~L~V~vi~a~~---L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      .|.|.|++|++   |..+| ..|.+||||+|++  ++++.||+++++++||+|||+|.|.+....    ..|.|.||   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d-~~g~sDPYv~i~~--g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~---   70 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKD-GRGSTDAYCVAKY--GPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVF---   70 (126)
T ss_pred             CeEEEEEEeECCccccccc-cCCCCCeeEEEEE--CCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEE---
Confidence            37899999999   88888 7899999999999  778899999999999999999999733322    24555555   


Q ss_pred             cCCCCCCCcceEEEEEeccCC------CCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRY------SRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~------~~d~~iG~~~i~l~~l~  429 (622)
                                      |++..      .+|++||++.++++.+.
T Consensus        71 ----------------d~d~~~~~~~~~~dd~lG~~~i~l~~l~   98 (126)
T cd08379          71 ----------------DNSQSHWKEAVQPDVLIGKVRIRLSTLE   98 (126)
T ss_pred             ----------------ECCCccccccCCCCceEEEEEEEHHHcc
Confidence                            77765      38999999999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.62  E-value=1.5e-15  Score=141.25  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      .|+|.|++|++|++++..|.+||||++.++  +   .+.+|+++.+ ++||.|||.|.|.+..+  ....|.|.|||++.
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~--~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~   73 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG--N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG   73 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC--C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence            389999999999999999999999999993  3   2667888876 69999999999998643  23459999999999


Q ss_pred             CCCCceeEEEEECCCCCC-----CcccchhhhhhcCCC
Q psy1415         580 VTKNEVIGRLDLGGDKSS-----GTALTHWTDVCNSPR  612 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~-----~~~~~~W~~L~~~p~  612 (622)
                      .+++++||++.|+|.++.     +.....||+|.+..+
T Consensus        74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~  111 (150)
T cd04019          74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGG  111 (150)
T ss_pred             CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCC
Confidence            889999999999998653     245689999997654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.62  E-value=1.5e-15  Score=136.62  Aligned_cols=104  Identities=32%  Similarity=0.570  Sum_probs=88.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      +|+|.|++|++|+.++..|.+||||++++  .+.   +.+|+++++++||.|||.|.|.+....  +..|.|+|||++..
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~   73 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY--NGQ---TLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV   73 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEE--CCE---EEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC
Confidence            48999999999999998899999999998  332   468999999999999999999987543  44699999999999


Q ss_pred             CCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      +++++||++.++|.++. +.....||.|....
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~  105 (123)
T cd04025          74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP  105 (123)
T ss_pred             CCCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence            99999999999997553 35568899998643

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>KOG1327|consensus

Probab=99.62  E-value=2.4e-15  Score=160.46  Aligned_cols=184  Identities=19%  Similarity=0.179  Sum_probs=153.1

Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccc----cCCCcceeeeccCCCCCCCCCCCCCCCcccccccc
Q psy1415         212 ASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENE----KAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNK  287 (622)
Q Consensus       212 kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~----~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~  287 (622)
                      +|+++++.+||.|-+.|   .+.+.|+..|.|+|.+||.++    +..+||+|++.|.++++.+....+..         
T Consensus        44 rte~i~~~~~p~f~~~~---~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~---------  111 (529)
T KOG1327|consen   44 RTEVIRNVLNPFFTKKF---LLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGP---------  111 (529)
T ss_pred             ceeeeeccCCccceeee---chhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhh---------
Confidence            89999999999995444   567999999999999999884    46789999999999999877632111         


Q ss_pred             ccccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCe
Q psy1415         288 ETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPI  363 (622)
Q Consensus       288 ~~~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~  363 (622)
                        ...........|.|.+.++............++|++|.++| .++++|||..++-..+..    .++|+++++++||.
T Consensus       112 --l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd-~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~  188 (529)
T KOG1327|consen  112 --LLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKD-FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQ  188 (529)
T ss_pred             --hhcccCccCCcccEEEEeecccccCceeeeeeeeeecCccc-ccccCCcceEEEEecCCCceeeccccceeccCCCCc
Confidence              00111245567999999999888888888889999999999 899999999999654332    89999999999999


Q ss_pred             eeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         364 YNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       364 W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |.+   |. ++...++.               .+.+++++++|||++..+++++||++..++.++.
T Consensus       189 w~~---~~-i~~~~l~~---------------~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  189 WAP---FS-ISLQSLCS---------------KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             ccc---cc-cchhhhcc---------------cCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            999   65 66676665               6788999999999999999999999999999886

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.62  E-value=7.6e-15  Score=136.45  Aligned_cols=89  Identities=30%  Similarity=0.436  Sum_probs=74.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|+|++|++|+.++ .+|.+||||++++  +++.++|+++.+ ++||+|||.|.|.+..+.   ...+.|.|+      
T Consensus         2 L~V~Vi~A~~L~~~d-~~g~sDPYV~v~l--~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~------   69 (150)
T cd04019           2 LRVTVIEAQDLVPSD-KNRVPEVFVKAQL--GNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVE------   69 (150)
T ss_pred             EEEEEEEeECCCCCC-CCCCCCeEEEEEE--CCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEE------
Confidence            789999999999999 7899999999999  678899999876 699999999999732211   234555555      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |++..+++++||++.++|+++.
T Consensus        70 -------------d~~~~~~dd~lG~v~i~L~~l~   91 (150)
T cd04019          70 -------------DRVGPNKDEPLGRAVIPLNDIE   91 (150)
T ss_pred             -------------EecCCCCCCeEEEEEEEHHHCc
Confidence                         8888888999999999999986

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.62  E-value=2.6e-15  Score=131.68  Aligned_cols=91  Identities=23%  Similarity=0.354  Sum_probs=77.3

Q ss_pred             cEEEEEEEeecCCCCCCCC----CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVT----GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~----g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      |.|.|+|++|++|++.+..    +.+||||++++  ++.   ++||+++++++||+|||.|.|.+..... ...|.|.||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~~---~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~   74 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GRR---VFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL   74 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CCE---eEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence            6899999999999987632    35899999998  322   5689999999999999999999875443 346999999


Q ss_pred             EcCCCCCCceeEEEEECCCCC
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      |++.+++|++||++.++|..+
T Consensus        75 D~d~~~~dd~IG~~~l~L~~l   95 (108)
T cd04039          75 DKDKFSFNDYVATGSLSVQEL   95 (108)
T ss_pred             ECCCCCCCcceEEEEEEHHHH
Confidence            999999999999999999743

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.61  E-value=5.1e-15  Score=136.98  Aligned_cols=105  Identities=29%  Similarity=0.443  Sum_probs=75.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      .|.|.|++|+||.. .  +|.+||||+|++.++.   ..++|+++++++||+|||+|.|.+........  ....+.   
T Consensus         1 kL~V~Vi~ArnL~~-~--~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~--~~~~~~---   72 (148)
T cd04010           1 KLSVRVIECSDLAL-K--NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEK--KQFEMP---   72 (148)
T ss_pred             CEEEEEEeCcCCCC-C--CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccccc--ccccCC---
Confidence            37899999999987 2  6889999999997643   37899999999999999999997321100000  000000   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                        ..+.....|.+.|||++..+++++||++.+++..+.
T Consensus        73 --~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~  108 (148)
T cd04010          73 --EEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLD  108 (148)
T ss_pred             --cccccEEEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence              001112345666679998889999999999999987

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.61  E-value=3e-15  Score=134.14  Aligned_cols=108  Identities=28%  Similarity=0.394  Sum_probs=90.6

Q ss_pred             cEEEEEEEeecCCCCCCC------CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDV------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL  573 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~------~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~  573 (622)
                      |.|+|.|++|++|+.++.      .|.+||||++++.  +   ..++|++++++.||.|||.|.|.+...  ....|.|+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~   73 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG--A---QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE   73 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC--C---EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence            579999999999998875      3789999999983  3   367899999999999999999998743  33469999


Q ss_pred             EEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhhcCCCCce
Q psy1415         574 LLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVCNSPRRQI  615 (622)
Q Consensus       574 V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~p~~~i  615 (622)
                      |||++.. ++++||.+.+++.+... .....||+|.+.+.+++
T Consensus        74 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~  115 (121)
T cd08391          74 LFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRL  115 (121)
T ss_pred             EEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceE
Confidence            9999988 89999999999976443 44678999998777776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=3.5e-15  Score=137.61  Aligned_cols=112  Identities=29%  Similarity=0.406  Sum_probs=93.0

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      |.|+|.|++|++|+..+. +.+||||++++  +++   +++|++++++.||.|||.|.|.+..+   ...|.|+|||++.
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~--g~~---~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~   72 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL--GNQ---KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDT   72 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEE--CCE---EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCC
Confidence            679999999999998887 89999999998  332   67899999999999999999999754   4469999999999


Q ss_pred             CCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      +++|++||.+.+++.........+|..-... +.+|..|.+-
T Consensus        73 ~~~dd~iG~a~i~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~  113 (145)
T cd04038          73 FSKDDSMGEAEIDLEPLVEAAKLDHLRDTPG-GTQIKKVLPS  113 (145)
T ss_pred             CCCCCEEEEEEEEHHHhhhhhhhhccccCCC-CEEEEEEecC
Confidence            9999999999999987666555555444333 5678888763

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.61  E-value=1.2e-14  Score=130.51  Aligned_cols=89  Identities=34%  Similarity=0.598  Sum_probs=75.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      +|+|+|++|++|+..+ .++.+||||++++  ++ ..++|++++++.||+|||.|.|. +.  .. ...|.|.       
T Consensus         1 ~L~v~v~~a~~L~~~d-~~g~~Dpyv~v~~--~~~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~-~~~l~~~-------   66 (121)
T cd04042           1 QLDIHLKEGRNLAARD-RGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFTLP-IE--DV-TQPLYIK-------   66 (121)
T ss_pred             CeEEEEEEeeCCCCcC-CCCCCCCeEEEEE--CCEEEEEeeeccCCCCCccceeEEEE-ec--CC-CCeEEEE-------
Confidence            4789999999999998 7899999999998  55 48999999999999999999996 32  11 2344444       


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  |||++..+++++||++.++++++.
T Consensus        67 ------------v~D~d~~~~~~~iG~~~~~l~~l~   90 (121)
T cd04042          67 ------------VFDYDRGLTDDFMGSAFVDLSTLE   90 (121)
T ss_pred             ------------EEeCCCCCCCcceEEEEEEHHHcC
Confidence                        459999889999999999999987

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.60  E-value=3.9e-15  Score=131.28  Aligned_cols=93  Identities=32%  Similarity=0.575  Sum_probs=78.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCee-eceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|+|++|++|+.++..++.+||||++++  ++.++||+++++++||.| ||.|.|. +...++....|.|.||      
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~--~~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~------   71 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKF--GSTTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVM------   71 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEE--CCeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEE------
Confidence            57999999999988733688999999999  568999999999999999 9999997 6555554445666665      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                                   |++..+++++||++.+++.++..
T Consensus        72 -------------d~d~~~~~~~iG~~~~~l~~l~~   94 (110)
T cd08688          72 -------------DHDTYSANDAIGKVYIDLNPLLL   94 (110)
T ss_pred             -------------eCCCCCCCCceEEEEEeHHHhcc
Confidence                         88888899999999999999973

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.60  E-value=2.8e-15  Score=135.75  Aligned_cols=104  Identities=25%  Similarity=0.403  Sum_probs=89.1

Q ss_pred             cEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      |.|+|.|++|++|+..+.  .|.+||||++.+  ++.   +++|+++++++||.|||.|.|.+..  ..+..|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~--~~~---~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~   73 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQ---RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDK   73 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE--CCE---EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEEC
Confidence            679999999999999998  899999999998  322   5789999999999999999999974  2345699999999


Q ss_pred             CCCCCCceeEEEEECCCCCC----CcccchhhhhhcC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSS----GTALTHWTDVCNS  610 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~----~~~~~~W~~L~~~  610 (622)
                      +..+++++||++.|++.+..    .....+||.|.+.
T Consensus        74 ~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~  110 (128)
T cd04024          74 DRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST  110 (128)
T ss_pred             CCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence            99989999999999997654    2346789999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.60  E-value=1.3e-14  Score=132.08  Aligned_cols=106  Identities=39%  Similarity=0.731  Sum_probs=87.9

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|.++++|.+  +.|.|.|++|++|+..+ .++.+||||++++.+.+   ..++|++++++.||.|||+|.|. +...
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~-~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~   76 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMD-PNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPA   76 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcC-CCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCch
Confidence            489999999976  89999999999999988 67889999999996432   38999999999999999999997 3322


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +                    ....|.+++||++..+++++||++.+++.++.
T Consensus        77 ~--------------------~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~  109 (131)
T cd04026          77 D--------------------KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI  109 (131)
T ss_pred             h--------------------cCCEEEEEEEECCCCCCcceeEEEEEeHHHhC
Confidence            2                    12234455559888889999999999999997

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.60  E-value=1.2e-14  Score=130.82  Aligned_cols=90  Identities=36%  Similarity=0.626  Sum_probs=75.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      +|+|+|++|++|..++ .++.+||||++++  ++..++|++++++.||.|||+|.|. +....  ...|.|         
T Consensus         1 ~L~v~vi~a~~L~~~d-~~~~~DPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~---------   65 (123)
T cd04025           1 RLRCHVLEARDLAPKD-RNGTSDPFVRVFY--NGQTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSV---------   65 (123)
T ss_pred             CEEEEEEEeeCCCCCC-CCCCcCceEEEEE--CCEEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEE---------
Confidence            4899999999999998 6889999999999  6678999999999999999999996 32211  233444         


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                +|||++..+++++||++.++++++.
T Consensus        66 ----------~v~d~~~~~~~~~iG~~~~~l~~l~   90 (123)
T cd04025          66 ----------EVWDWDLVSKNDFLGKVVFSIQTLQ   90 (123)
T ss_pred             ----------EEEECCCCCCCcEeEEEEEEHHHcc
Confidence                      4559998889999999999999886

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.60  E-value=7.3e-15  Score=131.16  Aligned_cols=90  Identities=29%  Similarity=0.416  Sum_probs=73.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|.|.|++|++|+..+ ..+.+||||++++  ++.+++|+++. ++.||+|||.|.|. +....  ...|.|       
T Consensus         1 g~L~V~v~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~~--~~~l~i-------   67 (118)
T cd08681           1 GTLVVVVLKARNLPNKR-KLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFE-ITEDK--KPILKV-------   67 (118)
T ss_pred             CEEEEEEEEccCCCCCC-cCCCCCceEEEEE--CCCccccccccCCCCCCccCceEEEE-ecCCC--CCEEEE-------
Confidence            57999999999999998 7899999999999  66788999875 57999999999997 43221  233444       


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  +|||++..+ +++||++.++++++.
T Consensus        68 ------------~v~d~~~~~-~~~iG~~~~~l~~~~   91 (118)
T cd08681          68 ------------AVFDDDKRK-PDLIGDTEVDLSPAL   91 (118)
T ss_pred             ------------EEEeCCCCC-CcceEEEEEecHHHh
Confidence                        455888766 899999999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.59  E-value=6.4e-15  Score=138.28  Aligned_cols=108  Identities=30%  Similarity=0.444  Sum_probs=89.2

Q ss_pred             cEEEEEEEeecCCCCCC------------------------------CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCC
Q psy1415         500 NRFTIVVLKARNLPKMD------------------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLN  549 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d------------------------------~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tln  549 (622)
                      |.|.|+|++|++|++||                              ..|.+||||++.+  ++..  ..||++++++.|
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~--~~rT~v~~~~~n   82 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGAR--VARTRVIENSEN   82 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeE--eeEEEEeCCCCC
Confidence            78999999999999988                              3567899999998  3332  468999999999


Q ss_pred             CeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415         550 PVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       550 P~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i  615 (622)
                      |.|||.|.|.+...  . ..|.|.|||++.++ +++||++.|++.++. +...++|++|.+.+++.+
T Consensus        83 P~WnE~F~~~~~~~--~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~  145 (158)
T cd04015          83 PVWNESFHIYCAHY--A-SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPP  145 (158)
T ss_pred             CccceEEEEEccCC--C-CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCC
Confidence            99999999998643  2 35999999999885 689999999997644 566789999998766544

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.59  E-value=2.1e-14  Score=127.82  Aligned_cols=100  Identities=26%  Similarity=0.427  Sum_probs=79.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      ++|.|++|++|+..+ .++.+||||++++  ++..++|+++++++||.|||.|.|.+...   ....|.|.|        
T Consensus         2 ~~V~v~~a~~L~~~~-~~~~~dPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~v~v--------   67 (116)
T cd08376           2 VTIVLVEGKNLPPMD-DNGLSDPYVKFRL--GNEKYKSKVCSKTLNPQWLEQFDLHLFDD---QSQILEIEV--------   67 (116)
T ss_pred             EEEEEEEEECCCCCC-CCCCCCcEEEEEE--CCEeEecccccCCCCCceeEEEEEEecCC---CCCEEEEEE--------
Confidence            789999999999998 6889999999999  66789999999999999999999973221   123444554        


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEee
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSF  442 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l  442 (622)
                                 ||++..+++++||++.++++++...  ..+..|+.+
T Consensus        68 -----------~d~~~~~~~~~iG~~~~~l~~l~~~--~~~~~w~~L  101 (116)
T cd08376          68 -----------WDKDTGKKDEFIGRCEIDLSALPRE--QTHSLELEL  101 (116)
T ss_pred             -----------EECCCCCCCCeEEEEEEeHHHCCCC--CceEEEEEc
Confidence                       4998888999999999999998732  234445444

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.59  E-value=4.5e-15  Score=133.10  Aligned_cols=101  Identities=24%  Similarity=0.425  Sum_probs=85.6

Q ss_pred             EEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         502 FTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       502 L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      |+|.|++|+||++++ ..|.+||||++.+  ++.  .+.+|+++++++||.|||.|.|.++..   ...|.|.|||++.+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~   74 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQE--EVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL   74 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCc--cEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence            679999999999874 4688999999998  332  257899999999999999999999743   24699999999999


Q ss_pred             CCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      +++++||.+.++++... +...+.||+|..
T Consensus        75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  104 (121)
T cd08401          75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQP  104 (121)
T ss_pred             CCCceEEEEEEEHHHccCCCCcEeeEEEEc
Confidence            99999999999997554 566788999975

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.59  E-value=1.5e-14  Score=129.75  Aligned_cols=102  Identities=26%  Similarity=0.543  Sum_probs=86.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |.|.|++|++|++++..|.+||||++.+  ++..  ..+|+++++++||.|||.|.|.+...   ...|.|.|||++.++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~--~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~   74 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEV--IIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLS   74 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEE--CCEe--eeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCC
Confidence            7899999999999999999999999998  3332  46899999999999999999998643   235999999999999


Q ss_pred             CCceeEEEEECCCCCCC--cccchhhhhhcC
Q psy1415         582 KNEVIGRLDLGGDKSSG--TALTHWTDVCNS  610 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~~--~~~~~W~~L~~~  610 (622)
                      ++++||++.+++..+..  ...++|+.|.+.
T Consensus        75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~  105 (121)
T cd04054          75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEV  105 (121)
T ss_pred             CCCEEEEEEEcHHHhccCCCCCCcEEECeee
Confidence            99999999999865443  346889999753

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.59  E-value=1.8e-14  Score=131.88  Aligned_cols=94  Identities=31%  Similarity=0.486  Sum_probs=79.3

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      +..|.|.|+|++|++|+..+ .++.+||||++++  ++..++|++++++.||.|||+|.|. +.  ++....|.|.    
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d-~~g~~DPYv~v~~--~~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~----   81 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCN-SNGKSDPYCEVSM--GSQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCIT----   81 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCC-CCCCcCcEEEEEE--CCEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEE----
Confidence            45678999999999999998 7899999999999  6779999999999999999999996 32  2222344444    


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |||++..+++++||++.+++.++.
T Consensus        82 ---------------V~D~d~~~~d~~lG~~~i~l~~l~  105 (136)
T cd08375          82 ---------------VFDRDFFSPDDFLGRTEIRVADIL  105 (136)
T ss_pred             ---------------EEECCCCCCCCeeEEEEEEHHHhc
Confidence                           559998889999999999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.58  E-value=1.3e-14  Score=130.71  Aligned_cols=106  Identities=25%  Similarity=0.400  Sum_probs=87.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .|+|.|++|++|++++..|.+||||++++.  +.. ...+|.++++++||.|||.|.|.+..+.  ...|.|+|||++.+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLG--KKK-INDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLL   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEEC--Cee-ccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCC
Confidence            378999999999999999999999999983  322 3567888899999999999999976433  34699999999999


Q ss_pred             CCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415         581 TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                      +++++||++.++|.+..-  ..||+.+.-.|..
T Consensus        76 ~~dd~iG~~~i~l~~~~~--~~~~~~~~~~~~~  106 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF--SKHRATCGLPPTY  106 (124)
T ss_pred             CCCceeEEEEEeeccccc--chHHHhccCCCcc
Confidence            999999999999964432  5677777766653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.58  E-value=1.1e-14  Score=132.80  Aligned_cols=107  Identities=26%  Similarity=0.388  Sum_probs=88.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC--CeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~--~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .|+|+|++|++|+.++..|.+||||++++.+.  +.....++|.++.+++||.|||.|.|.+...   ...|.|+|||++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence            37899999999999999999999999999643  2233366899999999999999999998643   235999999999


Q ss_pred             CCCCCceeEEEEECCCCCCCc-------ccchhhhhhcC
Q psy1415         579 RVTKNEVIGRLDLGGDKSSGT-------ALTHWTDVCNS  610 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~~~-------~~~~W~~L~~~  610 (622)
                      .++++++||++.+++.+....       ....||.|.+.
T Consensus        78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~  116 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR  116 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence            999999999999998754432       24589999753

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.58  E-value=5.8e-15  Score=132.41  Aligned_cols=100  Identities=28%  Similarity=0.402  Sum_probs=83.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      +|+|.|++|+||+.+    .+||||++.+.+     .+.+|++++++.||.|||.|.|.+..  .....|.|+|||++..
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~   69 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA   69 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence            489999999999887    689999999832     26799999999999999999999763  3445699999999987


Q ss_pred             CCCceeEEEEECCCCCCC------cccchhhhhhcCCC
Q psy1415         581 TKNEVIGRLDLGGDKSSG------TALTHWTDVCNSPR  612 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~~------~~~~~W~~L~~~p~  612 (622)
                       ++++||++.++|.+...      ....+||.|....+
T Consensus        70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~  106 (121)
T cd08378          70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG  106 (121)
T ss_pred             -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence             79999999999985432      23568999998875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.58  E-value=1.2e-14  Score=127.56  Aligned_cols=93  Identities=26%  Similarity=0.411  Sum_probs=75.1

Q ss_pred             CEEEEEEEEeeCCCCCCCC---CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         314 NVLVVTVIKCRDLFIKDTP---SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~---~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      |.|.|+|++|++|+..+..   .+.+||||+|++  +++++||+++++++||+|||.|.|. +...+. ...        
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~--------   68 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GRRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFD--------   68 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CCEeEeeeeecCCCCCcccceEEEE-EeCccC-CCE--------
Confidence            5799999999999987621   135899999999  6778999999999999999999996 322211 223        


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                 |.|+|||++..++|++||++.++|+++.
T Consensus        69 -----------L~~~V~D~d~~~~dd~IG~~~l~L~~l~   96 (108)
T cd04039          69 -----------IQFKVLDKDKFSFNDYVATGSLSVQELL   96 (108)
T ss_pred             -----------EEEEEEECCCCCCCcceEEEEEEHHHHH
Confidence                       4455559999999999999999999997

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.58  E-value=1.2e-14  Score=128.29  Aligned_cols=90  Identities=33%  Similarity=0.427  Sum_probs=76.4

Q ss_pred             CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC--CCCccEEEEEEE
Q psy1415         498 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD--NLDSVSLELLLL  575 (622)
Q Consensus       498 ~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~--~l~~~~L~i~V~  575 (622)
                      ....|+|.|++|++|+    .|.+||||++++.  ++   +++|++++++.||.|||.|.|.+..+  ++.+..|.|+||
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~--~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG--GQ---KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY   72 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEEC--CE---eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence            3457999999999998    5889999999994  32   56899999999999999999997543  233557999999


Q ss_pred             EcCCCCCCceeEEEEECCCCC
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      |++.++++++||++.++|..+
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v   93 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTV   93 (111)
T ss_pred             cCcccccCCccEEEEECCccc
Confidence            999998999999999999744

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.57  E-value=2.9e-14  Score=128.86  Aligned_cols=88  Identities=27%  Similarity=0.495  Sum_probs=72.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      |.|+|++|+||+. .  .+.+||||++++....+.++|+++++++||+|||.|.|. +...   ...|.|.||       
T Consensus         1 l~v~v~~A~~L~~-~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~-------   66 (126)
T cd08678           1 LLVKNIKANGLSE-A--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVY-------   66 (126)
T ss_pred             CEEEEEEecCCCC-C--CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEE-------
Confidence            5789999999987 3  689999999999322347999999999999999999997 4322   234555555       


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  |++..+++++||++.++++++.
T Consensus        67 ------------d~~~~~~~~~lG~~~i~l~~l~   88 (126)
T cd08678          67 ------------DNGKKSDSKFLGLAIVPFDELR   88 (126)
T ss_pred             ------------ECCCCCCCceEEEEEEeHHHhc
Confidence                        9988889999999999999987

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.57  E-value=9e-15  Score=130.67  Aligned_cols=103  Identities=24%  Similarity=0.429  Sum_probs=87.5

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      |.|+|.|++|++|+.++..+.+||||++++.  +.   +.+|++++++.||.|||+|.|.+..  . ...|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~~---~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~   72 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV--NA---RLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK   72 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC--CE---eeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC
Confidence            6799999999999999999999999999983  22   4689999999999999999999863  2 2459999999999


Q ss_pred             CCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415         580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP  611 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p  611 (622)
                      .+++++||++.+++.+.. .+..+||.|....
T Consensus        73 ~~~~~~iG~~~~~l~~~~-~~~~~~~~l~~~~  103 (119)
T cd08377          73 DKKPEFLGKVAIPLLSIK-NGERKWYALKDKK  103 (119)
T ss_pred             CCCCceeeEEEEEHHHCC-CCCceEEECcccC
Confidence            889999999999996553 4457899997653

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.57  E-value=1.2e-14  Score=131.48  Aligned_cols=112  Identities=26%  Similarity=0.411  Sum_probs=90.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .|+|.|++|++|+..|..|.+||||++++.  +   .+++|+++.+++||.|||.|.|.+...   ...|.|+|||++..
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~   73 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD   73 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence            589999999999999999999999999982  2   256899999999999999999988633   23599999999853


Q ss_pred             -----------CCCceeEEEEECCCCCCCcccchhhhhhcCCCC-ceeeEEec
Q psy1415         581 -----------TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR-QIAEWLTY  621 (622)
Q Consensus       581 -----------~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~-~i~~w~~l  621 (622)
                                 +++++||.+.+++... .....+||+|....++ .+.++..|
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~~  125 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTL-SGEMDVWYNLEKRTDKSAVSGAIRL  125 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHc-cCCCCeEEECccCCCCCcEeEEEEE
Confidence                       5799999999999754 4556899999976654 34555544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.57  E-value=2.9e-14  Score=130.13  Aligned_cols=90  Identities=42%  Similarity=0.655  Sum_probs=74.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      |.|+|++|++|+.++ ..+.+||||++++.+..     ..++|++++++.||.|||+|.|. +...   ...|.|.|   
T Consensus         2 L~v~Vi~a~~L~~~d-~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v---   73 (133)
T cd04033           2 LRVKVLAGIDLAKKD-IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEV---   73 (133)
T ss_pred             EEEEEEEeECCCccc-CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEE---
Confidence            789999999999998 68899999999986431     16799999999999999999997 4332   12344444   


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      ||++..+++++||++.++++++.
T Consensus        74 ----------------~d~~~~~~~~~iG~~~i~l~~l~   96 (133)
T cd04033          74 ----------------FDENRLTRDDFLGQVEVPLNNLP   96 (133)
T ss_pred             ----------------EECCCCCCCCeeEEEEEEHHHCC
Confidence                            59998889999999999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.56  E-value=3.5e-14  Score=127.02  Aligned_cols=90  Identities=27%  Similarity=0.503  Sum_probs=73.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|+|++|++|++.+ ..+.+||||++++.+. ..+++|++++++.||+|||+|.|. +....  ...|.|.||      
T Consensus         2 L~V~vi~a~~L~~~~-~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~~--~~~l~v~v~------   71 (119)
T cd04036           2 LTVRVLRATNITKGD-LLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQV--KNVLELTVM------   71 (119)
T ss_pred             eEEEEEEeeCCCccC-CCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCccc--CCEEEEEEE------
Confidence            789999999999988 6889999999998533 248999999999999999999996 43221  223455555      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |++.. ++++||++.++++++.
T Consensus        72 -------------d~d~~-~~~~iG~~~~~l~~l~   92 (119)
T cd04036          72 -------------DEDYV-MDDHLGTVLFDVSKLK   92 (119)
T ss_pred             -------------ECCCC-CCcccEEEEEEHHHCC
Confidence                         88888 8999999999999886

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.56  E-value=4.7e-14  Score=126.57  Aligned_cols=88  Identities=35%  Similarity=0.597  Sum_probs=73.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|.|++|++|..++ .+|.+||||++++  ++. ++||+++++++||.|||.|.|. +...   ...|           
T Consensus         2 l~v~vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l-----------   63 (121)
T cd04054           2 LYIRIVEGKNLPAKD-ITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTV-----------   63 (121)
T ss_pred             EEEEEEEeeCCcCCC-CCCCCCceEEEEE--CCEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEE-----------
Confidence            789999999999999 7889999999999  554 6899999999999999999996 3221   1234           


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                              .++|||++..+++++||++.++++.+.
T Consensus        64 --------~v~v~d~~~~~~d~~iG~~~~~~~~~~   90 (121)
T cd04054          64 --------SFYVLDEDTLSRDDVIGKVSLTREVIS   90 (121)
T ss_pred             --------EEEEEECCCCCCCCEEEEEEEcHHHhc
Confidence                    444559999999999999999988776

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.56  E-value=2.8e-14  Score=130.55  Aligned_cols=103  Identities=27%  Similarity=0.449  Sum_probs=81.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-----CC--CccEEEEE
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-----NL--DSVSLELL  573 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-----~l--~~~~L~i~  573 (622)
                      .|+|.|++|++|+.+|..|.+||||++.+.  +.   +++|+++++++||.|||.|.|.+...     ++  ....|.|+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~---~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQ---SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--Ce---eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            689999999999999999999999999983  22   66899999999999999999985311     11  12359999


Q ss_pred             EEEcCCCCCCceeEEEEEC-CCCC----CCcccchhhhhh
Q psy1415         574 LLDWDRVTKNEVIGRLDLG-GDKS----SGTALTHWTDVC  608 (622)
Q Consensus       574 V~D~d~~~~d~~LG~v~i~-L~~~----~~~~~~~W~~L~  608 (622)
                      |||++..++|++||++.+. +...    .+.....|++|.
T Consensus        77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~  116 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY  116 (135)
T ss_pred             EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee
Confidence            9999999999999999974 2222    224556677775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.56  E-value=1.2e-14  Score=131.48  Aligned_cols=102  Identities=21%  Similarity=0.311  Sum_probs=85.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |.|.|++|+||+.  ..|.+||||++++...   ..+++|+++.+++||.|||.|.|.+...   ...|.|+|||++..+
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP---PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS   72 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCC---CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC
Confidence            5799999999988  6789999999998321   2357999999999999999999998632   345999999999999


Q ss_pred             CCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      ++++||++.+++..+. .....+|++|...+
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  103 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPSGRQIFPLQGRP  103 (126)
T ss_pred             CCceEEEEEEeHHHhccCCceeEEEEecCCC
Confidence            9999999999997644 45567899998664

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.56  E-value=2.1e-14  Score=133.19  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=85.7

Q ss_pred             EEEEEeecC--CCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC------CCCccEEEEEE
Q psy1415         503 TIVVLKARN--LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD------NLDSVSLELLL  574 (622)
Q Consensus       503 ~V~I~~A~~--L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~------~l~~~~L~i~V  574 (622)
                      .++|..|++  |++.+..+.+||||++++...+....+.||+++++|+||+|||.|.|.|...      .+....|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            445555555  7888888999999999974333344588999999999999999999999754      24466799999


Q ss_pred             EEcCCC-CCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         575 LDWDRV-TKNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       575 ~D~d~~-~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      ||++.+ ++|++||++.++|.... .....+|++|+.
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~  121 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD  121 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence            999886 57999999999998654 346677999984

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.55  E-value=6.7e-14  Score=126.45  Aligned_cols=105  Identities=32%  Similarity=0.454  Sum_probs=87.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .|+|.|++|++|+.++..|.+||||++.+.+.+  ....+|+++++++||.|||.|.|.+...  ....|.|+|||++..
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFV   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCC
Confidence            589999999999999999999999999874322  2357999999999999999999998754  234699999999999


Q ss_pred             CCCceeEEEEECCCCC---C-Ccccchhhhhhc
Q psy1415         581 TKNEVIGRLDLGGDKS---S-GTALTHWTDVCN  609 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~---~-~~~~~~W~~L~~  609 (622)
                      +++++||++.++|...   . +.....|++|..
T Consensus        78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~  110 (126)
T cd04043          78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT  110 (126)
T ss_pred             CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence            8999999999999742   1 345678999965

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.55  E-value=1.5e-14  Score=132.50  Aligned_cols=108  Identities=26%  Similarity=0.460  Sum_probs=89.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-------------CCCcc
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSV  568 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-------------~l~~~  568 (622)
                      |+|.|++|++|+.+ ..|.+||||++++... ....+++|++++++.||.|||.|.|.+...             ++...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence            57899999999988 7899999999999642 222367999999999999999999998754             23456


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         569 SLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       569 ~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      .|.|+|||++..+++++||++.|++.+.. ......||.|....
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            79999999999989999999999997653 34668899987763

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.55  E-value=6.5e-14  Score=126.75  Aligned_cols=91  Identities=32%  Similarity=0.506  Sum_probs=76.6

Q ss_pred             CEEEEEEEEeeCCCCCCCC--CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         314 NVLVVTVIKCRDLFIKDTP--SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~--~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      |.|.|.|++|++|+..+ .  .+.+||||++++  ++.+++|++++++.||.|||.|.|. +..  .....|.|.||   
T Consensus         1 g~l~v~v~~a~~L~~~~-~~~~~~~dPyv~v~~--~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~---   71 (128)
T cd04024           1 GVLRVHVVEAKDLAAKD-RSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILW---   71 (128)
T ss_pred             CEEEEEEEEeeCCCccc-CCCCCCcCCeEEEEE--CCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEE---
Confidence            57899999999999988 6  789999999999  6678999999999999999999996 321  22334555555   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      |++..+++++||++.+++.++.
T Consensus        72 ----------------d~~~~~~~~~lG~~~i~l~~~~   93 (128)
T cd04024          72 ----------------DKDRFAGKDYLGEFDIALEEVF   93 (128)
T ss_pred             ----------------ECCCCCCCCcceEEEEEHHHhh
Confidence                            9888889999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.55  E-value=4.8e-14  Score=126.44  Aligned_cols=84  Identities=38%  Similarity=0.617  Sum_probs=70.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      |.|.|++|+||+.+     .+||||++++  +++..||++++++.||+|||+|.|. +.  .+....|.|.||       
T Consensus         2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l--~~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~-------   64 (121)
T cd08378           2 LYVRVVKARGLPAN-----SNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVW-------   64 (121)
T ss_pred             EEEEEEEecCCCcc-----cCCCEEEEEE--CCccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEE-------
Confidence            78999999999765     6899999999  5678999999999999999999996 22  223445666666       


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  |++.. ++++||++.++++++.
T Consensus        65 ------------d~d~~-~~~~lG~~~i~l~~l~   85 (121)
T cd08378          65 ------------DKDKA-KDDFLGGVCFDLSEVP   85 (121)
T ss_pred             ------------eCCCC-cCceeeeEEEEhHhCc
Confidence                        88766 7899999999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.55  E-value=4.4e-14  Score=123.47  Aligned_cols=87  Identities=24%  Similarity=0.406  Sum_probs=73.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      |.|+|++|++|+..+ ..+.+||||++++  +++.++|++++++.||+|||.|.|.+..+.   ...|.|.|+       
T Consensus         2 L~V~v~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~-------   68 (105)
T cd04050           2 LFVYLDSAKNLPLAK-STKEPSPYVELTV--GKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVK-------   68 (105)
T ss_pred             EEEEEeeecCCCCcc-cCCCCCcEEEEEE--CCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEE-------
Confidence            789999999999988 6889999999999  668999999999999999999999733322   234666665       


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                                  |++.   +++||++.++|.++..
T Consensus        69 ------------d~~~---~~~iG~~~i~l~~l~~   88 (105)
T cd04050          69 ------------DDKT---GKSLGSLTLPLSELLK   88 (105)
T ss_pred             ------------ECCC---CCccEEEEEEHHHhhc
Confidence                        7765   7899999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.54  E-value=4.9e-14  Score=128.48  Aligned_cols=107  Identities=24%  Similarity=0.408  Sum_probs=88.9

Q ss_pred             ccEEEEEEEeecCCCCCCCC----------CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCcc
Q psy1415         499 ANRFTIVVLKARNLPKMDVT----------GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSV  568 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~----------g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~  568 (622)
                      .|.|+|.|++|++|...+..          |.+||||++.+  ++..  ..+|++++++.||.|||.|.|.+..    ..
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~--~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~----~~   74 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTH--IGKTSTKPKTNSPVWNEEFTTEVHN----GR   74 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE--CCEE--EeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence            47899999999999988863          68999999998  4433  4588889999999999999999962    34


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEECCCCCC---CcccchhhhhhcCCCCce
Q psy1415         569 SLELLLLDWDRVTKNEVIGRLDLGGDKSS---GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       569 ~L~i~V~D~d~~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~~p~~~i  615 (622)
                      .|.|.|||++.++++++||++.++|.+..   +.....|++|.  |.+.+
T Consensus        75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l  122 (132)
T cd04014          75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKL  122 (132)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEE
Confidence            69999999999889999999999997544   35678899997  44555

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.54  E-value=1.2e-13  Score=124.93  Aligned_cols=87  Identities=25%  Similarity=0.473  Sum_probs=69.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      ..|.|.|++|+||+..    +.+||||+|++  ++. ..+|++ +++.||.|||+|.|. +...++  ..+.|.||    
T Consensus         4 ~~L~V~Vi~A~~L~~~----~~~DPYv~v~l--~~~~~~kT~v-~~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~----   69 (126)
T cd08400           4 RSLQLNVLEAHKLPVK----HVPHPYCVISL--NEVKVARTKV-REGPNPVWSEEFVFD-DLPPDV--NSFTISLS----   69 (126)
T ss_pred             eEEEEEEEEeeCCCCC----CCCCeeEEEEE--CCEeEEEeec-CCCCCCccCCEEEEe-cCCCCc--CEEEEEEE----
Confidence            4699999999999865    35899999999  554 678987 568999999999996 332222  23555555    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |++..+++++||++.++|+.+.
T Consensus        70 ---------------d~~~~~~d~~iG~v~i~l~~l~   91 (126)
T cd08400          70 ---------------NKAKRSKDSEIAEVTVQLSKLQ   91 (126)
T ss_pred             ---------------ECCCCCCCCeEEEEEEEHhHcc
Confidence                           8888889999999999999887

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.54  E-value=2.7e-14  Score=128.48  Aligned_cols=101  Identities=25%  Similarity=0.377  Sum_probs=84.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|++|++|+.++..|.+||||++++  ++.  ..++|+++++++||.|||.|.|.+..    +..|.|+|||++.++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~--~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~   73 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGG--QTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK   73 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEE--CCc--cceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence            7899999999999999999999999998  332  36789999999999999999999964    346999999999887


Q ss_pred             C--CceeEEEEECCCCCCC--cccchhhhhhcC
Q psy1415         582 K--NEVIGRLDLGGDKSSG--TALTHWTDVCNS  610 (622)
Q Consensus       582 ~--d~~LG~v~i~L~~~~~--~~~~~W~~L~~~  610 (622)
                      +  +++||++.+++.++..  .....|+.|...
T Consensus        74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  106 (123)
T cd08382          74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL  106 (123)
T ss_pred             CCCCceEeEEEEEHHHccccCCCccceeEeecC
Confidence            5  5899999999987543  335779888443

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.54  E-value=4e-14  Score=127.44  Aligned_cols=91  Identities=27%  Similarity=0.349  Sum_probs=77.3

Q ss_pred             CCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       497 ~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      ...+.|+|.|++|++|+ .+..|.+||||++++  ++.   ++||++++++.||.|||.|.|...... ....|.|+|||
T Consensus        25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~--~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D   97 (127)
T cd04032          25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFF--GGQ---EKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWD   97 (127)
T ss_pred             CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEE--CCc---cccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEe
Confidence            45689999999999998 467789999999998  332   779999999999999999999743211 24469999999


Q ss_pred             cCCCCCCceeEEEEECCC
Q psy1415         577 WDRVTKNEVIGRLDLGGD  594 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~  594 (622)
                      ++.+++|++||++.++|.
T Consensus        98 ~d~~s~dd~IG~~~i~l~  115 (127)
T cd04032          98 RDNGWDDDLLGTCSVVPE  115 (127)
T ss_pred             CCCCCCCCeeEEEEEEec
Confidence            999999999999999986

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.54  E-value=2.5e-14  Score=128.13  Aligned_cols=102  Identities=24%  Similarity=0.339  Sum_probs=85.5

Q ss_pred             EEEeecCCCCCCCCCCCCcEEEEEEEeCC--eEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC---
Q psy1415         505 VVLKARNLPKMDVTGLADPYVKVYLLYKG--QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR---  579 (622)
Q Consensus       505 ~I~~A~~L~~~d~~g~sDPyV~v~l~~~~--~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~---  579 (622)
                      ..++|++|++.+..|.+||||++++.+..  .....++|+++++++||.|||.|.|.+..+..  ..|.|+|||++.   
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~   82 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcC
Confidence            46899999999999999999999997653  45567899999999999999999998654333  359999999997   


Q ss_pred             -CCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415         580 -VTKNEVIGRLDLGGDKSS-GTALTHWTDVC  608 (622)
Q Consensus       580 -~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~  608 (622)
                       .+++++||++.+++.++. +.....|+.|.
T Consensus        83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence             789999999999998654 35567788883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.53  E-value=9.8e-14  Score=123.97  Aligned_cols=90  Identities=31%  Similarity=0.512  Sum_probs=75.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      |.|.|.|++|++|+..+ .++.+||||++++  ++..++|++++++.||.|+|+|.|. +.  ++               
T Consensus         1 g~l~v~v~~a~~L~~~~-~~~~~dPyv~v~~--~~~~~~T~~~~~t~nP~W~e~f~~~-~~--~~---------------   59 (119)
T cd08377           1 GFLQVKVIRASGLAAAD-IGGKSDPFCVLEL--VNARLQTHTIYKTLNPEWNKIFTFP-IK--DI---------------   59 (119)
T ss_pred             CEEEEEEEeeeCCCCCC-CCCCCCcEEEEEE--CCEeeecceecCCcCCccCcEEEEE-ec--Cc---------------
Confidence            57899999999999988 7889999999999  5667899999999999999999986 32  11               


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                           ...|.++|||++..+++++||++.+++.++.
T Consensus        60 -----~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~   90 (119)
T cd08377          60 -----HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK   90 (119)
T ss_pred             -----CCEEEEEEEECCCCCCCceeeEEEEEHHHCC
Confidence                 1234455559888889999999999998886

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.53  E-value=6.9e-14  Score=125.82  Aligned_cols=93  Identities=28%  Similarity=0.494  Sum_probs=74.8

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      |.|.|+|++|++|+..+...+.+||||++++.++...++|++++++.||.|||.|.|. +..   ....|.|.||     
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~-----   72 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVY-----   72 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEE-----
Confidence            6789999999999975524567999999999321258999999999999999999986 331   1234555555     


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                    |++..+++++||++.+++.++.
T Consensus        73 --------------d~~~~~~d~~iG~~~~~l~~l~   94 (124)
T cd04044          73 --------------DFNDKRKDKLIGTAEFDLSSLL   94 (124)
T ss_pred             --------------ecCCCCCCceeEEEEEEHHHhc
Confidence                          9888889999999999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.53  E-value=5e-14  Score=127.33  Aligned_cols=101  Identities=24%  Similarity=0.440  Sum_probs=82.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      ..|+|.|++|+||++.   +.+||||++.+  ++..  ..+|++ +++.||.|||.|.|.+......  .+.|.|||++.
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l--~~~~--~~kT~v-~~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~   73 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISL--NEVK--VARTKV-REGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAK   73 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEE--CCEe--EEEeec-CCCCCCccCCEEEEecCCCCcC--EEEEEEEECCC
Confidence            4699999999999874   47899999999  3332  457776 4689999999999987644433  48899999999


Q ss_pred             CCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         580 VTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      .+++++||.+.|+|.... +....+||.|.+.
T Consensus        74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~  105 (126)
T cd08400          74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSA  105 (126)
T ss_pred             CCCCCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence            999999999999997543 5667889999865

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.53  E-value=7.5e-14  Score=123.26  Aligned_cols=91  Identities=30%  Similarity=0.431  Sum_probs=75.7

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEccc-CcccCCCcEEEEEEEeec
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGI-TPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~-~~~~l~~~~L~~~V~d~d  391 (622)
                      ...|+|.|++|++|.     ++.+||||++++  ++++++|++++++.||.|||+|.|.+. ...++.+..|.|.||   
T Consensus         3 ~~~l~V~v~~a~~L~-----~~~~dpyv~v~~--~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~---   72 (111)
T cd04011           3 DFQVRVRVIEARQLV-----GGNIDPVVKVEV--GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY---   72 (111)
T ss_pred             cEEEEEEEEEcccCC-----CCCCCCEEEEEE--CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE---
Confidence            457899999999997     357999999999  677889999999999999999999632 223444555666666   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      |++.++++++||++.++|+++.
T Consensus        73 ----------------d~~~~~~~~~iG~~~i~l~~v~   94 (111)
T cd04011          73 ----------------DSRSLRSDTLIGSFKLDVGTVY   94 (111)
T ss_pred             ----------------cCcccccCCccEEEEECCcccc
Confidence                            8888888999999999999996

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.53  E-value=3.8e-14  Score=127.68  Aligned_cols=108  Identities=23%  Similarity=0.357  Sum_probs=89.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCC-CccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNL-DSVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l-~~~~L~i~V~D~  577 (622)
                      |.|+|.|++|++|+.++..+.+||||++++  .+.   .++|++..+ +.||.||+.|.|.+..... ....|.|.|||+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~--~~~---~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   75 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC--RTQ---ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK   75 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEE--CCE---eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence            579999999999999998899999999998  322   457777774 8999999999999986532 234699999999


Q ss_pred             CCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR  612 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~  612 (622)
                      +.++++++||++.+++.+.. +.....|+.|....-
T Consensus        76 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~  111 (124)
T cd04049          76 DNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY  111 (124)
T ss_pred             ccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence            99999999999999998654 456688998877643

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.53  E-value=5.7e-14  Score=126.45  Aligned_cols=93  Identities=30%  Similarity=0.405  Sum_probs=76.0

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      ..+.|.|+|++|++|+. + ..+.+||||+|++  +++++||++++++.||+|||+|.|......  ..           
T Consensus        26 ~~~~L~V~V~~A~~L~~-d-~~g~~DPYVkV~~--~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~-----------   88 (127)
T cd04032          26 GLATLTVTVLRATGLWG-D-YFTSTDGYVKVFF--GGQEKRTEVIWNNNNPRWNATFDFGSVELS--PG-----------   88 (127)
T ss_pred             CcEEEEEEEEECCCCCc-C-cCCCCCeEEEEEE--CCccccCceecCCCCCcCCCEEEEecccCC--CC-----------
Confidence            45678899999999985 5 5788999999999  667999999999999999999998522221  12           


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                              ..|.|+|||++..++|++||++.++|....
T Consensus        89 --------~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          89 --------GKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             --------CEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence                    335555669999999999999999999876

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.52  E-value=1.4e-13  Score=123.22  Aligned_cols=91  Identities=35%  Similarity=0.564  Sum_probs=73.9

Q ss_pred             CEEEEEEEEeeCCCCCCCC-----CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTP-----SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~-----~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      |.|.|.|++|+||+..+..     .+.+||||++++  ++..++|++++++.||.|+|.|.|. +...  ....|.|.||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~--~~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~   75 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV--GAQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELF   75 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE--CCEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEE
Confidence            5689999999999988721     368999999999  6689999999999999999999986 3221  1234555554


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |++.. ++++||.+.++++++.
T Consensus        76 -------------------d~~~~-~~~~iG~~~i~l~~l~   96 (121)
T cd08391          76 -------------------DEDPD-KDDFLGRLSIDLGSVE   96 (121)
T ss_pred             -------------------ecCCC-CCCcEEEEEEEHHHhc
Confidence                               88877 8899999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.52  E-value=8.4e-14  Score=129.11  Aligned_cols=93  Identities=30%  Similarity=0.508  Sum_probs=74.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCC--------------CCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSG--------------SSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKG  380 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~--------------~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~  380 (622)
                      .|.|+|++|++|+.+| .++              .+||||+|.+  +++..||+++++++||+|||+|.|.+..+. . .
T Consensus         1 ~~~V~V~~A~dLp~~d-~~~~~~~~~~~~~~~~~~~DPYV~V~~--~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~-~-~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMD-SGIMANVKKAFLGEKKELVDPYVEVSF--AGQKVKTSVKKNSYNPEWNEQIVFPEMFPP-L-C   75 (151)
T ss_pred             CeEEEEEEeCCCCccC-hhhhccceeccccCCCCCcCcEEEEEE--CCEeeecceEcCCCCCCcceEEEEEeeCCC-c-C
Confidence            3789999999999987 343              6899999999  677889999999999999999999632221 1 1


Q ss_pred             cEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         381 STLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       381 ~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                      ..|.                   |+|||+|..+++++||++.+++.++...
T Consensus        76 ~~l~-------------------~~v~D~d~~~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          76 ERIK-------------------IQIRDWDRVGNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             CEEE-------------------EEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence            2344                   4455999989999999999999988743

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.51  E-value=3.2e-13  Score=121.95  Aligned_cols=106  Identities=20%  Similarity=0.323  Sum_probs=80.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      .|.|+|++|++|+..+ .++.+||||++++.++ ...+||++++++.||.|||+|.|. +...  ....|.|.||     
T Consensus         2 ~~~V~v~~a~~L~~~~-~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~-----   72 (126)
T cd04043           2 LFTIRIVRAENLKADS-SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVW-----   72 (126)
T ss_pred             EEEEEEEEeECCCCCC-CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEE-----
Confidence            6889999999999998 6889999999998433 237899999999999999999997 3322  1234555555     


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC-ceeeEEEEeec
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG-STLHFVVFSFD  443 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~~~l~  443 (622)
                                    |++..+++++||++.++|..+.... +..+..|..+.
T Consensus        73 --------------d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~  109 (126)
T cd04043          73 --------------DRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD  109 (126)
T ss_pred             --------------ECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence                          8888888999999999998765322 33344455543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.51  E-value=2e-13  Score=122.79  Aligned_cols=88  Identities=25%  Similarity=0.390  Sum_probs=73.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      |.|+|++|++|..++ .++.+||||++++. +.++++|+++++++||.|||.|.|. +..    ...|.|.||       
T Consensus         2 l~v~v~~A~~L~~~~-~~~~~dpyv~v~~~-~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~-------   67 (123)
T cd08382           2 VRLTVLCADGLAKRD-LFRLPDPFAVITVD-GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVF-------   67 (123)
T ss_pred             eEEEEEEecCCCccC-CCCCCCcEEEEEEC-CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEE-------
Confidence            789999999999998 78999999999992 2458999999999999999999997 332    234555555       


Q ss_pred             CCCCcceEEEEEeccCCCC--cceeeEEEEeCCccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSR--DDIVGEVFYSLQSFE  429 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~--d~~iG~~~i~l~~l~  429 (622)
                                  |++..++  +++||++.++++++.
T Consensus        68 ------------d~~~~~~~~d~~lG~~~i~l~~l~   91 (123)
T cd08382          68 ------------DQKKFKKKDQGFLGCVRIRANAVL   91 (123)
T ss_pred             ------------ECCCCCCCCCceEeEEEEEHHHcc
Confidence                        8887765  589999999999987

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.51  E-value=1.3e-13  Score=122.62  Aligned_cols=88  Identities=23%  Similarity=0.360  Sum_probs=69.8

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      +.|.|.|++|++|...+    ..||||+|.+  ++++.+|+++++ .||.|||.|.|. +.  +                
T Consensus         2 ~~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~--g~~k~kT~v~~~-~nP~WnE~F~F~-~~--~----------------   55 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD----KFNTYVTLKV--QNVKSTTIAVRG-SQPCWEQDFMFE-IN--R----------------   55 (127)
T ss_pred             ceEEEEEEEeeCCCCCC----CCCCeEEEEE--CCEEeEeeECCC-CCCceeeEEEEE-Ec--C----------------
Confidence            57999999999997654    3589999999  778899999887 599999999997 22  1                


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG  432 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~  432 (622)
                          .+..|.++|||.+.+ .|++||++.++|+++...+
T Consensus        56 ----~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~   89 (127)
T cd08394          56 ----LDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSN   89 (127)
T ss_pred             ----CCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCC
Confidence                122245555597754 8999999999999998443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.50  E-value=9.2e-14  Score=123.56  Aligned_cols=96  Identities=19%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      +.|.|.|++|++|+..+   ..||||++.+  ++   .+.+|++.++ .||.|||.|.|.+..  ... .|.|.|||++.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~--g~---~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~-~L~v~V~dkd~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV--QN---VKSTTIAVRG-SQPCWEQDFMFEINR--LDL-GLVIELWNKGL   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEE--CC---EEeEeeECCC-CCCceeeEEEEEEcC--CCC-EEEEEEEeCCC
Confidence            57999999999997544   4699999999  33   2678888887 599999999999863  333 39999999986


Q ss_pred             CCCCceeEEEEECCCCCCC---cccchhhhhh
Q psy1415         580 VTKNEVIGRLDLGGDKSSG---TALTHWTDVC  608 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~~---~~~~~W~~L~  608 (622)
                      + .|++||++.|+|.++..   ....+||+|.
T Consensus        70 ~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          70 I-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             c-CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            6 89999999999986442   3337899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.50  E-value=9e-14  Score=125.68  Aligned_cols=100  Identities=22%  Similarity=0.333  Sum_probs=84.3

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      ...|+|.|++|++|...+..|.+||||++.+  ++.   +.+|++++++.||.|||.|.|.+...   ...|.|+|||++
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~   73 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC--EGE---SVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN   73 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE--CCE---EEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence            3579999999999999999999999999988  333   56899999999999999999987633   446999999998


Q ss_pred             CCCCCceeEEEEECCCCCCCcccchhhhhh
Q psy1415         579 RVTKNEVIGRLDLGGDKSSGTALTHWTDVC  608 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~  608 (622)
                      ..+ |++||++.+++... .....+|+.|.
T Consensus        74 ~~~-d~~lG~~~~~l~~~-~~~~~~~~~l~  101 (126)
T cd04046          74 LLC-DEFLGQATLSADPN-DSQTLRTLPLR  101 (126)
T ss_pred             CCC-CCceEEEEEecccC-CCcCceEEEcc
Confidence            874 89999999999653 45556788885

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.50  E-value=8.7e-14  Score=122.57  Aligned_cols=92  Identities=25%  Similarity=0.415  Sum_probs=75.9

Q ss_pred             EEEEEeecCCCCCCCCCCCCcEEEEEEEeCC-eEeeEeeeeeccCCCCCeeecEEEEEecCCCCC----ccEEEEEEEEc
Q psy1415         503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD----SVSLELLLLDW  577 (622)
Q Consensus       503 ~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~-~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~----~~~L~i~V~D~  577 (622)
                      .+..++|++|+.++..|.+||||++++.+.. .....++|+++++++||.|| .|.|++.  .++    ...|.|+|||+
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d~   79 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYDY   79 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEEe
Confidence            3557799999999999999999999986543 44457899999999999999 6777653  221    34699999999


Q ss_pred             CCCCCCceeEEEEECCCCCC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~  597 (622)
                      +..++|++||++.+++.++.
T Consensus        80 d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          80 DSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCCCcEEEEEEEEHHHHh
Confidence            99999999999999997544

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.50  E-value=2.8e-13  Score=123.97  Aligned_cols=90  Identities=23%  Similarity=0.438  Sum_probs=72.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCc----ccCCCcEEEEEEEee
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP----HQLKGSTLHFVVFSF  390 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~----~~l~~~~L~~~V~d~  390 (622)
                      +|+|.|++|++|+.+| .++.+||||++++  ++..++|++++++.||.|||.|.|.+...    .++.           
T Consensus         2 ~l~v~V~~a~~L~~~d-~~g~~dpyv~v~~--~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~-----------   67 (135)
T cd04017           2 QLRAYIYQARDLLAAD-KSGLSDPFARVSF--LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIA-----------   67 (135)
T ss_pred             EEEEEEEEeecCcCCC-CCCCCCCEEEEEE--CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhh-----------
Confidence            6899999999999998 7899999999999  66799999999999999999999863221    1110           


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEe
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS  424 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~  424 (622)
                            +....|.++|||++..++|++||++.+.
T Consensus        68 ------~~~~~l~v~V~d~d~~~~d~~iG~~~i~   95 (135)
T cd04017          68 ------QNPPLVVVELFDQDSVGKDEFLGRSVAK   95 (135)
T ss_pred             ------cCCCEEEEEEEeCcCCCCCccceEEEee
Confidence                  0112355666699999999999999873

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.50  E-value=2.9e-13  Score=122.48  Aligned_cols=85  Identities=29%  Similarity=0.428  Sum_probs=69.4

Q ss_pred             EEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCC
Q psy1415         320 VIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIG  399 (622)
Q Consensus       320 vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~  399 (622)
                      |++|++|+.   ..+.+||||+|++  ++..++|++++++.||+|||.|.|.+.... .....|.|.||           
T Consensus         2 vi~a~~L~~---~~g~~Dpyv~v~~--~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~-----------   64 (127)
T cd08373           2 VVSLKNLPG---LKGKGDRIAKVTF--RGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVK-----------   64 (127)
T ss_pred             eEEeeCCcc---cCCCCCCEEEEEE--CCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEE-----------
Confidence            789999988   2678999999999  667899999999999999999999732211 22334555555           


Q ss_pred             cceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         400 STLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       400 ~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                              |++..+++++||++.++++++.
T Consensus        65 --------d~~~~~~d~~iG~~~~~l~~l~   86 (127)
T cd08373          65 --------DYEKVGRNRLIGSATVSLQDLV   86 (127)
T ss_pred             --------ECCCCCCCceEEEEEEEhhHcc
Confidence                    9988889999999999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.49  E-value=1.9e-13  Score=126.10  Aligned_cols=89  Identities=42%  Similarity=0.647  Sum_probs=76.2

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      |.|.|.|++|+||+..+ . +.+||||++++  +++.++|++++++.||+|||.|.|.+..+                  
T Consensus         2 G~L~V~Vi~a~nL~~~d-~-~~sDPYV~v~~--g~~~~kT~vvk~t~nP~WnE~f~f~i~~~------------------   59 (145)
T cd04038           2 GLLKVRVVRGTNLAVRD-F-TSSDPYVVLTL--GNQKVKTRVIKKNLNPVWNEELTLSVPNP------------------   59 (145)
T ss_pred             eEEEEEEEeeECCCCCC-C-CCcCcEEEEEE--CCEEEEeeeEcCCCCCeecccEEEEecCC------------------
Confidence            67999999999999988 5 78999999999  77899999999999999999999973221                  


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                           ..+|.|+|||++.+++|++||++.+++..+.
T Consensus        60 -----~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~   90 (145)
T cd04038          60 -----MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV   90 (145)
T ss_pred             -----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhh
Confidence                 2334555559999999999999999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.49  E-value=5.5e-14  Score=126.82  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=87.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCC--CccEEEEEEEEc
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL--DSVSLELLLLDW  577 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l--~~~~L~i~V~D~  577 (622)
                      .|+|.|++|++|+..+..+.+||||++++.+    ..+++|++.. ++.||.|||.|.|.+....+  ....|.|+|||+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~   76 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE   76 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence            3789999999999999899999999999943    1256888875 58999999999999976532  245699999999


Q ss_pred             CCCCCCceeEEEEECCCCCCCcc------cchhhhhhcCCC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSSGTA------LTHWTDVCNSPR  612 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~~~~------~~~W~~L~~~p~  612 (622)
                      +.++++++||++.|+|.++....      ...||+|....|
T Consensus        77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g  117 (125)
T cd04051          77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG  117 (125)
T ss_pred             CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence            99889999999999998655322      367999997543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.49  E-value=3.5e-13  Score=121.96  Aligned_cols=89  Identities=29%  Similarity=0.570  Sum_probs=72.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      .|.|.|++|++|+..| .++.+||||++++  ++..++|+++++++||.|||.|.|.+...    ...|.|.||      
T Consensus         2 ~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~--~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~------   68 (127)
T cd04027           2 KISITVVCAQGLIAKD-KTGTSDPYVTVQV--GKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVW------   68 (127)
T ss_pred             eEEEEEEECcCCcCCC-CCCCcCcEEEEEE--CCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEE------
Confidence            6899999999999998 6889999999999  66789999999999999999999862221    234556666      


Q ss_pred             CCCCCcceEEEEEeccCC-----------CCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRY-----------SRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~-----------~~d~~iG~~~i~l~~l~  429 (622)
                                   |++..           +.+++||++.+++.++.
T Consensus        69 -------------d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          69 -------------DEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             -------------ECCCCcccccceeccccCCCcceEEEEEhHHcc
Confidence                         65532           46899999999998774

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.48  E-value=1.7e-13  Score=120.21  Aligned_cols=84  Identities=26%  Similarity=0.358  Sum_probs=70.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc----
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW----  577 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~----  577 (622)
                      |.|.|.+|+||+     |.+||||++++.+.+....+.||+++++|+||+|||.|.|.+..    ...|.+.|||+    
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEccccc
Confidence            579999999995     56899999998654433357899999999999999999999863    33699999998    


Q ss_pred             ---CCCCCCceeEEEEECCC
Q psy1415         578 ---DRVTKNEVIGRLDLGGD  594 (622)
Q Consensus       578 ---d~~~~d~~LG~v~i~L~  594 (622)
                         |..++|+++|+..|.|+
T Consensus        72 ~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          72 VKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccccCcccEEEEEEEEEC
Confidence               46689999999888885

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.48  E-value=1.4e-13  Score=124.56  Aligned_cols=102  Identities=31%  Similarity=0.474  Sum_probs=84.9

Q ss_pred             EEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCce
Q psy1415         506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEV  585 (622)
Q Consensus       506 I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~  585 (622)
                      |++|++|+.  ..|.+||||++++  ++.   +++|++++++.||.|||.|.|.+.........|.|+|||++..+++++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~--~~~---~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~   74 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTF--RGV---KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL   74 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEE--CCE---eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCce
Confidence            789999988  6789999999998  332   568999999999999999999997543345569999999999999999


Q ss_pred             eEEEEECCCCCCC-cccchhhhhhcCCCCc
Q psy1415         586 IGRLDLGGDKSSG-TALTHWTDVCNSPRRQ  614 (622)
Q Consensus       586 LG~v~i~L~~~~~-~~~~~W~~L~~~p~~~  614 (622)
                      ||++.+++.++.. .....|+.|.+..+..
T Consensus        75 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~  104 (127)
T cd08373          75 IGSATVSLQDLVSEGLLEVTEPLLDSNGRP  104 (127)
T ss_pred             EEEEEEEhhHcccCCceEEEEeCcCCCCCc
Confidence            9999999986554 5567899998665543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.48  E-value=8.1e-13  Score=119.43  Aligned_cols=90  Identities=22%  Similarity=0.355  Sum_probs=73.7

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      ...|.|+|++|++|...+ .+|.+||||++++  +++.++|++++++.||+|||.|.|. ...                 
T Consensus         2 ~~~~~V~v~~A~~L~~~d-~~g~~dPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~-~~~-----------------   60 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQD-SGGGADPYVIIKC--EGESVRSPVQKDTLSPEFDTQAIFY-RKK-----------------   60 (126)
T ss_pred             cEEEEEEEEeCcCCCCCC-CCCCcCccEEEEE--CCEEEEeCccCCCCCCcccceEEEE-ecC-----------------
Confidence            357899999999999988 7899999999998  6778999999999999999999885 221                 


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                           ....|.++|||++.. ++++||++.++++.+.
T Consensus        61 -----~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~~   91 (126)
T cd04046          61 -----PRSPIKIQVWNSNLL-CDEFLGQATLSADPND   91 (126)
T ss_pred             -----CCCEEEEEEEECCCC-CCCceEEEEEecccCC
Confidence                 123345555588776 4899999999998754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.47  E-value=7.4e-13  Score=120.68  Aligned_cols=91  Identities=31%  Similarity=0.429  Sum_probs=75.4

Q ss_pred             CCEEEEEEEEeeCCCCCCCC----------CCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCc
Q psy1415         313 ENVLVVTVIKCRDLFIKDTP----------SGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGS  381 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~----------~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~  381 (622)
                      .|.|.|.|++|++|...+ .          .+.+||||++++  +++ ..+|++++++.||.|||+|.|. +.    ...
T Consensus         3 ~g~l~V~v~~a~~L~~~d-~~~~~~~~~~~~g~~dpyv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~   74 (132)
T cd04014           3 TGTLKIKICEAVDLKPTD-WSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGR   74 (132)
T ss_pred             ceEEEEEEEEecCCCCCC-chhhhcccccCccCcCcEEEEEE--CCEEEeEEeEcCCCCCCCcceeEEEE-cC----CCC
Confidence            467999999999999887 3          257999999999  554 6799999999999999999997 43    123


Q ss_pred             EEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         382 TLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       382 ~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      .|.|.||                   |++..+++++||++.++|+++..
T Consensus        75 ~l~~~v~-------------------d~~~~~~~~~iG~~~i~l~~l~~  104 (132)
T cd04014          75 NLELTVF-------------------HDAAIGPDDFVANCTISFEDLIQ  104 (132)
T ss_pred             EEEEEEE-------------------eCCCCCCCceEEEEEEEhHHhcc
Confidence            5556655                   88888889999999999999873

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.47  E-value=2e-13  Score=121.22  Aligned_cols=105  Identities=34%  Similarity=0.524  Sum_probs=87.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|++|++|+..+..|.+||||++.+  .+.  ..++|+++.++.||.||+.|.|.+...  .+..|.|+|||++..+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~--~~~--~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~   74 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYL--NGE--KVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGG   74 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEE--CCC--cceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCC
Confidence            5789999999999998899999999998  332  257899999999999999999998743  3446999999999999


Q ss_pred             CCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415         582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR  612 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~  612 (622)
                      ++++||++.+++.+.. +.....|.+|....+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          75 KDDLLGSAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             CCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            9999999999997644 456788988876544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.46  E-value=3.4e-13  Score=118.80  Aligned_cols=94  Identities=24%  Similarity=0.440  Sum_probs=75.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      +.+..++|++|+..| .++.+||||++++.+++    ..++|+++++++||+|+ .|.|.   ..+++.           
T Consensus         2 ~~~~~i~a~~L~~~d-~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~-----------   65 (110)
T cd04047           2 VVELQFSGKKLDKKD-FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCN-----------   65 (110)
T ss_pred             EEEEEEEeCCCCCCC-CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcC-----------
Confidence            345678999999999 78899999999986543    27999999999999999 56664   223322           


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                          ++....|.|+|||++..++|++||++.++++++.
T Consensus        66 ----~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          66 ----GDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             ----CCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence                3334567777779999999999999999999986

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.46  E-value=6.8e-13  Score=121.14  Aligned_cols=105  Identities=24%  Similarity=0.289  Sum_probs=82.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE--------eeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEE
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR--------VAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLE  571 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~--------~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~  571 (622)
                      .+.|.+++|+||+ .+..|.+||||++++.+++..        ..+++|.++++++||.| ||.|.|.+...    ..|.
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~   76 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLE   76 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEE
Confidence            3678999999998 777899999999999754433        23789999999999999 99999998633    2599


Q ss_pred             EEEEEcCCCCC---CceeEEEEECCCCCCCc----ccchhhhhhcC
Q psy1415         572 LLLLDWDRVTK---NEVIGRLDLGGDKSSGT----ALTHWTDVCNS  610 (622)
Q Consensus       572 i~V~D~d~~~~---d~~LG~v~i~L~~~~~~----~~~~W~~L~~~  610 (622)
                      |+|||++..++   +++||++.|++..+...    ....||.|-..
T Consensus        77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          77 IEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99999875443   79999999999865422    24557766544

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.46  E-value=3.6e-13  Score=121.14  Aligned_cols=93  Identities=29%  Similarity=0.435  Sum_probs=78.8

Q ss_pred             cEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         500 NRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      |.|+|.|++|++|+..+ ..+.+||||++.+.+.   ...++|+++.++.||.|||.|.|.+..  . +..|.|+|||++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~--~-~~~l~~~v~d~~   75 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS--L-TEPLNLTVYDFN   75 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC--C-CCEEEEEEEecC
Confidence            68999999999999766 4567999999999432   236799999999999999999999872  2 346999999999


Q ss_pred             CCCCCceeEEEEECCCCCCC
Q psy1415         579 RVTKNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~~  598 (622)
                      ..+++++||.+.++|.+...
T Consensus        76 ~~~~d~~iG~~~~~l~~l~~   95 (124)
T cd04044          76 DKRKDKLIGTAEFDLSSLLQ   95 (124)
T ss_pred             CCCCCceeEEEEEEHHHhcc
Confidence            99899999999999986554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1326|consensus

Probab=99.46  E-value=1.7e-13  Score=152.52  Aligned_cols=384  Identities=15%  Similarity=0.105  Sum_probs=210.6

Q ss_pred             ccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccc------CCCeEE
Q psy1415         173 LALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCV------ALPGTV  246 (622)
Q Consensus       173 l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~------~~L~~~  246 (622)
                      +.+.+-.++.+.|.+..+-+||   |..+...   .+...|.++..|+||.||++..|..++...+..      ..+.|+
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp---~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e  281 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDP---DAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE  281 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCc---hhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence            4455667999999999999999   9998864   455689999999999999999998877665433      234599


Q ss_pred             EEeccccCCCcceeeeccCCCCCCCCCC----------CCCCC--ccccccccccccCCCCCCCcceEEEEEEEEECC--
Q psy1415         247 VITENEKAAPLVLGVAGPTTAGNGPAAN----------GTDSD--DSCALVNKETVDCDGNAEGKLGQIFFKIKYQEK--  312 (622)
Q Consensus       247 V~d~d~~~~dd~lG~~~~~l~~l~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~--  312 (622)
                      |||.|+...++|+|...+...-....+.          ..+.+  ++...++....  ..... ..-++.+.  -.|.  
T Consensus       282 ~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~rg~~l~gd~l~a~eliq~~~~--i~~p~-~~~~~~~~--~vp~~i  356 (1105)
T KOG1326|consen  282 VYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMRGAFLDGDVLIAAELIQIGKP--IPQPP-PQREIIFS--LVPKKI  356 (1105)
T ss_pred             eehhhhhchHHhhcccccceEEEecCCccceEEeecccccccchhHHHHHHhhcCC--CCCCC-ccccccee--ccccCC
Confidence            9999999999999955533222221010          00111  11101111110  00000 00011111  1111  


Q ss_pred             -----CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeee-cCCCCCeeeceeEEcc--cCcccCCCcEEE
Q psy1415         313 -----ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVL-RKTRNPIYNEEFTFTG--ITPHQLKGSTLH  384 (622)
Q Consensus       313 -----~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi-~~t~nP~W~e~f~f~~--~~~~~l~~~~L~  384 (622)
                           .+.+.|....-+|+.... ......|-+-+.+  +++..++..| ....||.+...|.+..  ...+++.-..+.
T Consensus       357 Rp~~q~~~~evl~wgLrn~k~~~-m~~~~~P~~~~e~--g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~  433 (1105)
T KOG1326|consen  357 RPKTQIGKAELLMWGLRNPKKSG-MASTFSPALLVEF--GGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLN  433 (1105)
T ss_pred             Ccceeeeeeehhhhhhccccccc-ccccCCcceeEee--CCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccce
Confidence                 122333333445554443 4455677777777  7775555555 3455777776665422  222344444566


Q ss_pred             EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeC-CccccCCce---ee-----------------------E
Q psy1415         385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSL-QSFETYGST---LH-----------------------F  437 (622)
Q Consensus       385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l-~~l~~~~~~---~~-----------------------~  437 (622)
                      +.|.                   |.+.+++....|+|.+.- .....+...   .+                       .
T Consensus       434 akvv-------------------d~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~  494 (1105)
T KOG1326|consen  434 AKVV-------------------DLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNS  494 (1105)
T ss_pred             eEEE-------------------ecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccc
Confidence            6666                   555555556666554431 111101000   00                       0


Q ss_pred             EEEeeccCCCCccc-eeEEEee---------------------ecccccCc-------------ccccccccC---cccc
Q psy1415         438 VVFSFDRYSRDDIV-GEVFYSL---------------------QSFETYGH-------------SLSFCRDIQ---PRNL  479 (622)
Q Consensus       438 ~~~~l~~~~~~~~~-g~~~~~l---------------------~~~~~~~~-------------~~~~~~~~~---~~~~  479 (622)
                      .+........+... -..|-.+                     ..+....+             ...+..+..   ....
T Consensus       495 ~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~  574 (1105)
T KOG1326|consen  495 STLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQ  574 (1105)
T ss_pred             cCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCccc
Confidence            00000000000000 0000000                     00000000             000000000   0011


Q ss_pred             ccccCCCCceeeeccc------------------cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeee
Q psy1415         480 RIKSQGRGEILLSLCW------------------QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT  541 (622)
Q Consensus       480 ~~~~~~~G~l~i~l~~------------------~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT  541 (622)
                      .+.+.-+|.+++...-                  .|....++|.+.+|-+|.+.|.+|.+|||+++.++   +....-+.
T Consensus       575 ~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~  651 (1105)
T KOG1326|consen  575 QIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRA  651 (1105)
T ss_pred             chhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhh
Confidence            1122233444443221                  12224588999999999999999999999999983   33334578


Q ss_pred             eeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCC
Q psy1415         542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD  594 (622)
Q Consensus       542 ~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~  594 (622)
                      +.+.+|+||+|++.|.+....+...  -++++|||+|.++.|+.||+..++|.
T Consensus       652 ~yip~tlnPVfgkmfel~~~lp~ek--~l~v~vyd~D~~~~d~~iget~iDLE  702 (1105)
T KOG1326|consen  652 HYIPNTLNPVFGKMFELECLLPFEK--DLIVEVYDHDLEAQDEKIGETTIDLE  702 (1105)
T ss_pred             hcCcCCCCcHHHHHHHhhcccchhh--cceeEEEEeecccccchhhceehhhh
Confidence            8999999999999888887655433  38899999999999999999999996

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.46  E-value=5.1e-13  Score=118.87  Aligned_cols=102  Identities=27%  Similarity=0.485  Sum_probs=84.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|++|++|+..   |.+||||.+++  ++.  .+++|+++++ .||.|||.|.|.+...++....|.|.+||.+..+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~--~~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~   73 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSL--DQV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD   73 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEE--CCE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence            78999999999876   78999999999  333  2568988988 9999999999999876655567889999988777


Q ss_pred             CCceeEEEEECCCCCCCcccchhhhhhcCCC
Q psy1415         582 KNEVIGRLDLGGDKSSGTALTHWTDVCNSPR  612 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~  612 (622)
                      ++.++|.+.|+.. ..+....+||+|.+.++
T Consensus        74 ~~~~~g~v~l~~~-~~~~~~~~w~~L~~~~~  103 (117)
T cd08383          74 RDIVIGKVALSKL-DLGQGKDEWFPLTPVDP  103 (117)
T ss_pred             CeeEEEEEEecCc-CCCCcceeEEECccCCC
Confidence            8889999998864 44777899999987543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.45  E-value=1.6e-12  Score=121.98  Aligned_cols=91  Identities=26%  Similarity=0.428  Sum_probs=73.3

Q ss_pred             CCEEEEEEEEeeCCCCCCC-----------------------------CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCC
Q psy1415         313 ENVLVVTVIKCRDLFIKDT-----------------------------PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNP  362 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~-----------------------------~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP  362 (622)
                      .|.|.|+|++|++|+++|.                             ..|.+||||+|++  ++. +.||++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeEeeEEEEeCCCCCC
Confidence            4789999999999999871                             3567899999999  554 6799999999999


Q ss_pred             eeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         363 IYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       363 ~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .|||+|.|. +...   ...|.|.|+                   |++..+ +++||.+.++++++.
T Consensus        84 ~WnE~F~~~-~~~~---~~~l~~~V~-------------------d~d~~~-~~~IG~~~i~l~~l~  126 (158)
T cd04015          84 VWNESFHIY-CAHY---ASHVEFTVK-------------------DNDVVG-AQLIGRAYIPVEDLL  126 (158)
T ss_pred             ccceEEEEE-ccCC---CCEEEEEEE-------------------eCCCcC-CcEEEEEEEEhHHcc
Confidence            999999996 3211   134666666                   877764 689999999999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.44  E-value=6.6e-13  Score=119.65  Aligned_cols=89  Identities=33%  Similarity=0.570  Sum_probs=73.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      ++|.|++|++|+..+ ..+.+||||++++  ++.  ..||+++++++||+|||+|.|. +...  ....|          
T Consensus         2 lrV~Vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L----------   65 (124)
T cd04037           2 VRVYVVRARNLQPKD-PNGKSDPYLKIKL--GKKKINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSIL----------   65 (124)
T ss_pred             EEEEEEECcCCCCCC-CCCCCCcEEEEEE--CCeeccceeeEEECCCCCccceEEEEE-ecCC--CCCEE----------
Confidence            789999999999998 7889999999999  443  5789999999999999999996 2211  12334          


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                               .++|||++..+++++||++.+++++..
T Consensus        66 ---------~~~V~d~d~~~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          66 ---------KISVMDYDLLGSDDLIGETVIDLEDRF   92 (124)
T ss_pred             ---------EEEEEECCCCCCCceeEEEEEeecccc
Confidence                     445559999899999999999998775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.44  E-value=1.1e-12  Score=118.29  Aligned_cols=95  Identities=31%  Similarity=0.452  Sum_probs=76.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|.|.|++|++|+..+ ..+.+||||++++  ++..++|+++++ +.||.|||.|.|. +...+.              
T Consensus         1 g~L~V~V~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~--------------   62 (124)
T cd04049           1 GTLEVLLISAKGLQDTD-FLGKIDPYVIIQC--RTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGW--------------   62 (124)
T ss_pred             CeEEEEEEecCCCCCCC-CCCCcCceEEEEE--CCEeeeeeEcCCCCCCCcccceEEEE-ecCccc--------------
Confidence            57899999999999988 6789999999999  667889998874 8999999999997 332211              


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                          .....|.|+|||.+..+++++||++.+++.++..
T Consensus        63 ----~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~   96 (124)
T cd04049          63 ----GGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE   96 (124)
T ss_pred             ----CCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhh
Confidence                0123345555599888899999999999999973

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.43  E-value=1e-12  Score=118.54  Aligned_cols=94  Identities=28%  Similarity=0.350  Sum_probs=74.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      |.|+|++|++|+..+ ..+.+||||+|++  ++ ..++|+++. ++.||.|||.|.|. +....+               
T Consensus         2 L~V~V~sA~~L~~~~-~~~~~dpYv~v~~--~~~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~---------------   62 (125)
T cd04051           2 LEITIISAEDLKNVN-LFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFP-LDERLL---------------   62 (125)
T ss_pred             EEEEEEEcccCCCCC-cccCCceEEEEEE--CCCcccccccccCCCCCCCCCCEEEEE-cChHhc---------------
Confidence            789999999999988 6889999999999  45 688999875 68999999999997 443321               


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                        ++....|.+++||++..+++++||++.+++.++..
T Consensus        63 --~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          63 --QQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             --ccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence              01122344455598888889999999999999973

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.42  E-value=3.9e-12  Score=116.13  Aligned_cols=88  Identities=28%  Similarity=0.445  Sum_probs=71.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----------ceeEeeeecCCCCCee-eceeEEcccCcccCCCcEE
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----------QKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTL  383 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----------~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L  383 (622)
                      ..|.+++|+||+ ++ .+|++||||++++.+++           +.++|+++++++||+| ||.|.|. +...    ..|
T Consensus         3 ~~~~~~~A~~L~-~~-~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L   75 (137)
T cd08691           3 FSLSGLQARNLK-KG-MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLPT----DVL   75 (137)
T ss_pred             EEEEEEEeCCCC-Cc-cCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCCC----CEE
Confidence            578899999998 66 68999999999997654           3699999999999999 9999997 3322    245


Q ss_pred             EEEEEeeccCCCCCCCcceEEEEEeccCCCC---cceeeEEEEeCCccc
Q psy1415         384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR---DDIVGEVFYSLQSFE  429 (622)
Q Consensus       384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~---d~~iG~~~i~l~~l~  429 (622)
                      .+.||                   |++..++   +++||++.+++.++.
T Consensus        76 ~v~V~-------------------D~~~~~~~~~~d~lG~~~i~l~~l~  105 (137)
T cd08691          76 EIEVK-------------------DKFAKSRPIIRRFLGKLSIPVQRLL  105 (137)
T ss_pred             EEEEE-------------------ecCCCCCccCCceEEEEEEEHHHhc
Confidence            56655                   7654333   799999999999997

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.42  E-value=1.2e-12  Score=120.04  Aligned_cols=105  Identities=33%  Similarity=0.482  Sum_probs=77.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC--CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~--~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      |.|.|++|++|+.+  .++.+||||++++.+.  +.+++|++++++.||.|+|+|.|.+.....  .....+.+.     
T Consensus         1 L~V~Vi~A~~L~~~--~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~--~~~~~~~~~-----   71 (137)
T cd08675           1 LSVRVLECRDLALK--SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFS--YEKKSFKVE-----   71 (137)
T ss_pred             CEEEEEEccCCCcc--cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccc--ccccccccc-----
Confidence            57899999999887  3788999999999532  448999999999999999999997333211  000001111     


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..+-....|.|+|||++..+++++||++.+++.++.
T Consensus        72 ~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~  107 (137)
T cd08675          72 EEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ  107 (137)
T ss_pred             cccccccEEEEEEEcCCcCcCCcEEEEEEEehhhcc
Confidence            011234457777779998889999999999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.42  E-value=8.2e-13  Score=122.69  Aligned_cols=94  Identities=34%  Similarity=0.553  Sum_probs=75.9

Q ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---------------------------ceeEeeeecCCCC
Q psy1415         309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---------------------------QKVKTRVLRKTRN  361 (622)
Q Consensus       309 ~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---------------------------~~~kT~vi~~t~n  361 (622)
                      ..+..+.|.|+|++|++|..+| .+|.+||||+|++.+..                           ..++|+++++++|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKD-VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccC-CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            4456788999999999999999 78999999999985431                           2479999999999


Q ss_pred             CeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       362 P~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |+|||+|.|. +.  ++....|.|.||                   |++    +++||++.++++++.
T Consensus       102 P~WnE~F~f~-v~--~~~~~~L~i~V~-------------------D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         102 PVWNETFRFE-VE--DVSNDQLHLDIW-------------------DHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             CccccEEEEE-ec--cCCCCEEEEEEE-------------------ecC----CCeEEEEEEEHHHhC
Confidence            9999999997 32  223344555555                   876    899999999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.42  E-value=3.8e-15  Score=149.07  Aligned_cols=95  Identities=41%  Similarity=0.494  Sum_probs=91.4

Q ss_pred             ccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy1415          42 RRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEA  114 (622)
Q Consensus        42 ~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae~  114 (622)
                      ++||+|++|||.++|++|+|+++ |++.+|+++.+   +|+    +||+|++++++++++++.|+++|+.|+.+|++||.
T Consensus       112 e~k~~E~~rkl~~~E~~Le~aEe-R~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~  190 (237)
T PF00261_consen  112 ERKYEEVERKLKVLEQELERAEE-RAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN  190 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999 99999999988   666    99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccc
Q psy1415         115 RAEFAEKTVKKLQKEVDRLEVSG  137 (622)
Q Consensus       115 rae~ae~~~~~l~~~~~~le~~~  137 (622)
                      ||++||++|.+|+++||.|++..
T Consensus       191 Rae~aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  191 RAEFAERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998864

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.41  E-value=1.7e-12  Score=116.27  Aligned_cols=90  Identities=24%  Similarity=0.427  Sum_probs=75.5

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|.|+|++|++|+..+ .++.+||||++++  ++ .+++|++++++.||.|||.|.|. +...   ...          
T Consensus         1 g~L~V~Vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~----------   63 (120)
T cd04045           1 GVLRLHIRKANDLKNLE-GVGKIDPYVRVLV--NGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQK----------   63 (120)
T ss_pred             CeEEEEEEeeECCCCcc-CCCCcCCEEEEEE--CCEEeeceeEECCCcCCccCceEEEE-ecCC---CCE----------
Confidence            57899999999999998 6899999999999  55 48999999999999999999885 2211   123          


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                               |.|+|||++..+++++||++.+++.++.
T Consensus        64 ---------L~v~v~d~~~~~~d~~IG~~~~~l~~l~   91 (120)
T cd04045          64 ---------ITLEVMDYEKVGKDRSLGSVEINVSDLI   91 (120)
T ss_pred             ---------EEEEEEECCCCCCCCeeeEEEEeHHHhh
Confidence                     4455559999899999999999999997

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.41  E-value=8.7e-13  Score=119.31  Aligned_cols=108  Identities=29%  Similarity=0.362  Sum_probs=88.0

Q ss_pred             EEEEEEEeecCCCCCC--CCCCCCcEEEEEEEeCCe-EeeEeeeeeccCCC-CCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         501 RFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQ-RVAKKKTHVKKRTL-NPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d--~~g~sDPyV~v~l~~~~~-~~~~~kT~~~~~tl-nP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      .|+|.|++|++|+.++  ..+..||||++++.+.+. ...+++|+++.++. ||.|||.|.|.+..++  ...|.|+|||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~d   80 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVYD   80 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEEe
Confidence            5899999999999988  578999999999976543 34578899988775 9999999999988544  2359999999


Q ss_pred             cCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                      ++.. ++++||++.++++++..  ..+|++|.+..++
T Consensus        81 ~~~~-~~~~iG~~~~~l~~l~~--g~~~~~l~~~~~~  114 (128)
T cd00275          81 EDSG-DDDFLGQACLPLDSLRQ--GYRHVPLLDSKGE  114 (128)
T ss_pred             CCCC-CCcEeEEEEEEhHHhcC--ceEEEEecCCCCC
Confidence            9988 89999999999976532  3468888876554

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.41  E-value=1.7e-12  Score=116.29  Aligned_cols=90  Identities=29%  Similarity=0.420  Sum_probs=72.6

Q ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       318 V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      ...++|++|+..+ .++.+||||++++.+..     ..++|+++++++||+|+|+|.|. +....  .            
T Consensus         4 ~~~i~a~~L~~~d-~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~------------   67 (120)
T cd04048           4 ELSISCRNLLDKD-VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--V------------   67 (120)
T ss_pred             EEEEEccCCCCCC-CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--e------------
Confidence            3568999999998 78999999999997654     16999999999999999999985 32222  1            


Q ss_pred             CCCCCCCcceEEEEEeccC----CCCcceeeEEEEeCCcccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDR----YSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~----~~~d~~iG~~~i~l~~l~~  430 (622)
                             ..|.|+|||++.    .+++++||++.++++++..
T Consensus        68 -------~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~  102 (120)
T cd04048          68 -------QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVS  102 (120)
T ss_pred             -------eEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhc
Confidence                   234555558886    7899999999999999973

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.40  E-value=4.4e-12  Score=117.66  Aligned_cols=101  Identities=26%  Similarity=0.435  Sum_probs=71.8

Q ss_pred             EEEEEEEeeC--CCCCCCCCCCCCCEEEEEEe-CCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         316 LVVTVIKCRD--LFIKDTPSGSSDPYVKVHLL-PDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       316 L~V~vi~a~~--L~~~d~~~~~sDPyv~v~l~-~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      ..++|..|++  |+..+ .++.+||||++++. |+.+  ++||+++++|+||+|||+|.|. ++...  . .+.      
T Consensus         4 ~el~i~~~~~~~l~~~~-~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~--~-~~~------   72 (155)
T cd08690           4 IELTIVRCIGIPLPSGW-NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKH--R-SFQ------   72 (155)
T ss_pred             eEEEEEEeeccccCCCc-CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-ecccc--c-hhh------
Confidence            3455556666  66776 57889999999973 4333  9999999999999999999997 44331  0 000      


Q ss_pred             ccCCCCCCCcceEEEEEeccCC-CCcceeeEEEEeCCccccC
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRY-SRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~-~~d~~iG~~~i~l~~l~~~  431 (622)
                          ......+|.++|||++.+ .+|++||++.++|+.+...
T Consensus        73 ----R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~  110 (155)
T cd08690          73 ----RVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETK  110 (155)
T ss_pred             ----hhccCCcEEEEEEeCCCcccCCCeeEEEEEEccccccc
Confidence                001124466666699876 5799999999999999733

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.40  E-value=3.2e-12  Score=113.45  Aligned_cols=90  Identities=34%  Similarity=0.619  Sum_probs=73.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      |.|.|++|++|+..+ ..+.+||||++++. +...++|+++.++.||+|||+|.|. +...  ....             
T Consensus         1 l~v~vi~a~~L~~~~-~~~~~dpyv~v~~~-~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~-------------   62 (115)
T cd04040           1 LTVDVISAENLPSAD-RNGKSDPFVKFYLN-GEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAV-------------   62 (115)
T ss_pred             CEEEEEeeeCCCCCC-CCCCCCCeEEEEEC-CCcceeeceecCCCCCcccccEEEE-eccC--CCCE-------------
Confidence            578999999999988 68899999999992 2347899999999999999999996 3211  1233             


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                            +.|++||++..+++++||++.+++.++.
T Consensus        63 ------l~~~v~d~~~~~~~~~iG~~~~~l~~l~   90 (115)
T cd04040          63 ------LKVEVYDWDRGGKDDLLGSAYIDLSDLE   90 (115)
T ss_pred             ------EEEEEEeCCCCCCCCceEEEEEEHHHcC
Confidence                  4445559988889999999999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.36  E-value=4.1e-12  Score=105.51  Aligned_cols=85  Identities=44%  Similarity=0.644  Sum_probs=75.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|++|+||+..+..+..||||++.+.+...  ..++|.++.++.+|.||+.|.|.+.......  |.|+|||++..+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCC
Confidence            789999999999988889999999999976543  4689999999999999999999987665554  999999999999


Q ss_pred             CCceeEEEE
Q psy1415         582 KNEVIGRLD  590 (622)
Q Consensus       582 ~d~~LG~v~  590 (622)
                      ++++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            999999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.35  E-value=1.2e-11  Score=109.96  Aligned_cols=82  Identities=33%  Similarity=0.519  Sum_probs=61.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|.|++|++|+..    +.+||||++++  +++ .++|+++++ .||.|||+|.|. +...++....|.+.++      
T Consensus         2 L~v~vi~a~~l~~~----~~~dpyv~v~~--~~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~------   67 (117)
T cd08383           2 LRLRILEAKNLPSK----GTRDPYCTVSL--DQVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNK------   67 (117)
T ss_pred             eEEEEEEecCCCcC----CCCCceEEEEE--CCEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEE------
Confidence            68999999999865    67999999999  554 689999999 999999999997 5544443334444444      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEe
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYS  424 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~  424 (622)
                                   |.+...++..+|.+.+.
T Consensus        68 -------------d~~~~~~~~~~g~v~l~   84 (117)
T cd08383          68 -------------DKRSKDRDIVIGKVALS   84 (117)
T ss_pred             -------------ecccCCCeeEEEEEEec
Confidence                         76666566777765544

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.35  E-value=2.6e-12  Score=113.37  Aligned_cols=97  Identities=27%  Similarity=0.434  Sum_probs=78.7

Q ss_pred             CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         517 VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       517 ~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      .+|.+||||++.+  +++.  ..+|++++++.||.|||.|.|.+...  ....|.|.|||++.+ ++++||.+.++|.++
T Consensus         9 ~~G~~dPYv~v~v--~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l   81 (111)
T cd04052           9 KTGLLSPYAELYL--NGKL--VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL   81 (111)
T ss_pred             cCCCCCceEEEEE--CCEE--EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence            4788999999999  3332  56888899999999999999998743  334599999999999 899999999999765


Q ss_pred             C--CcccchhhhhhcCCCCce---eeEEe
Q psy1415         597 S--GTALTHWTDVCNSPRRQI---AEWLT  620 (622)
Q Consensus       597 ~--~~~~~~W~~L~~~p~~~i---~~w~~  620 (622)
                      .  +.....||.|.+.+++.|   ..|.+
T Consensus        82 ~~~~~~~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          82 IDATSVGQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             HhhhhccceeEECCCCCCCEEEEEEEEec
Confidence            3  344578999998888888   55554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.35  E-value=4.9e-12  Score=111.12  Aligned_cols=82  Identities=29%  Similarity=0.380  Sum_probs=64.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|+|.+|+||+      +.+||||++.+.+.+.   ++||+++++|+||+|||+|.|. +..    ...|.+.||    
T Consensus         1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~----   65 (118)
T cd08686           1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCY----   65 (118)
T ss_pred             CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEE----
Confidence            578999999994      3489999999865432   7999999999999999999997 432    346777777    


Q ss_pred             CCCCCCCcceEEEEEec-------cCCCCcceeeEEEEeCCc
Q psy1415         393 YSRDDIGSTLHFVVFSF-------DRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~-------d~~~~d~~iG~~~i~l~~  427 (622)
                                     |+       |..++|++||.+.+.|+-
T Consensus        66 ---------------d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          66 ---------------EKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ---------------EcccccccccccCcccEEEEEEEEECH
Confidence                           55       456789999888887753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.35  E-value=4e-12  Score=114.66  Aligned_cols=93  Identities=29%  Similarity=0.411  Sum_probs=78.7

Q ss_pred             EEEEEEeecCCCCCC--CCC--CCCcEEEEEEEeCCeEeeEeeeeeccCCCC--CeeecEEEEEecC-------------
Q psy1415         502 FTIVVLKARNLPKMD--VTG--LADPYVKVYLLYKGQRVAKKKTHVKKRTLN--PVYNESFVFEVPA-------------  562 (622)
Q Consensus       502 L~V~I~~A~~L~~~d--~~g--~sDPyV~v~l~~~~~~~~~~kT~~~~~tln--P~wne~f~f~v~~-------------  562 (622)
                      |+|.|.+|++++..+  ..|  .+||||++.+.+.  ...+++|.++++++|  |.||+.|.|++.-             
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            899999999966543  466  4999999999553  345789999999999  9999999999876             


Q ss_pred             --------CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         563 --------DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       563 --------~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                              +.+....|.|+|||.|.+++|++||.++++|...
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l  121 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL  121 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence                    4455678999999999999999999999999743

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.34  E-value=3.3e-12  Score=117.35  Aligned_cols=103  Identities=18%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      ..|.|.|++|++|++++     +|||.+.+  ++..  ..||+++.++.||.|+|.|.|..... .  ..|.|.||+.+.
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~--vaRT~v~~~~~nP~W~E~F~f~~~~~-~--~~l~v~v~k~~~   78 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCL--DKTL--YARTTSKLKTDTLFWGEHFEFSNLPP-V--SVITVNLYRESD   78 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEE--CCEE--EEEEEEEcCCCCCcceeeEEecCCCc-c--cEEEEEEEEccC
Confidence            56999999999999876     89999999  5443  56999999999999999999975432 2  249999986543


Q ss_pred             -CC---CCceeEEEEECCCCCC-CcccchhhhhhcCCCCc
Q psy1415         580 -VT---KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQ  614 (622)
Q Consensus       580 -~~---~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~  614 (622)
                       .+   ++.+||.+.|++..+. +...+.||+|.+..++.
T Consensus        79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~  118 (146)
T cd04013          79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG  118 (146)
T ss_pred             ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence             22   6789999999998654 57789999999988776

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.34  E-value=5.9e-12  Score=111.14  Aligned_cols=80  Identities=28%  Similarity=0.360  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceE
Q psy1415         325 DLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLH  403 (622)
Q Consensus       325 ~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~  403 (622)
                      +|...+..+|.+||||++++  +++ .++|++++++.||.|||.|.|.+.+.   ....|.|.|+               
T Consensus         2 ~~~~~~~~~G~~dPYv~v~v--~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~~l~i~v~---------------   61 (111)
T cd04052           2 GLDTSESKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNASTEFLVTDR---RKSRVTVVVK---------------   61 (111)
T ss_pred             CcccccccCCCCCceEEEEE--CCEEEEEEeeeccCCCCccCCceEEEecCc---CCCEEEEEEE---------------
Confidence            34433336789999999999  664 78999999999999999999963221   2334555555               


Q ss_pred             EEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         404 FVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       404 i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                          |++.. ++++||.+.++|+++.
T Consensus        62 ----d~~~~-~d~~iG~~~v~L~~l~   82 (111)
T cd04052          62 ----DDRDR-HDPVLGSVSISLNDLI   82 (111)
T ss_pred             ----ECCCC-CCCeEEEEEecHHHHH
Confidence                88888 8999999999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.33  E-value=1.1e-11  Score=111.80  Aligned_cols=99  Identities=27%  Similarity=0.370  Sum_probs=79.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV  580 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~  580 (622)
                      .|+|.|.+|+ |...+..+.+||||++++  ++.  ..++|++++++.||.|||.|.|.+..    ...|.|+|||++..
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~--~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~   73 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTV--DGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTL   73 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEE--CCc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCC
Confidence            5899999998 555555889999999998  333  36789999999999999999999863    23599999999999


Q ss_pred             CCCceeEEEEECCCCCCC----cc--cchhhhhh
Q psy1415         581 TKNEVIGRLDLGGDKSSG----TA--LTHWTDVC  608 (622)
Q Consensus       581 ~~d~~LG~v~i~L~~~~~----~~--~~~W~~L~  608 (622)
                      +++++||++.++|.+...    ..  ..-|++|.
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            999999999999874332    11  22377776

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.32  E-value=2.2e-11  Score=109.90  Aligned_cols=88  Identities=40%  Similarity=0.531  Sum_probs=72.4

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      ..|.|+|++|+ |...+ ..+.+||||++++  +++ .++|++++++.||.|+|.|.|. +..    ...|.|.      
T Consensus         2 ~~L~V~i~~a~-l~~~~-~~~~~dPyv~v~~--~~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~------   66 (125)
T cd04021           2 SQLQITVESAK-LKSNS-KSFKPDPYVEVTV--DGQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFK------   66 (125)
T ss_pred             ceEEEEEEeeE-CCCCC-cCCCCCeEEEEEE--CCcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEE------
Confidence            46899999998 55555 4788999999999  565 8999999999999999999996 331    2244444      


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |||++..+++++||++.++|.++.
T Consensus        67 -------------V~d~~~~~~~~~iG~~~i~l~~l~   90 (125)
T cd04021          67 -------------VWSHHTLKADVLLGEASLDLSDIL   90 (125)
T ss_pred             -------------EEeCCCCCCCcEEEEEEEEHHHhH
Confidence                         459999889999999999999987

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.31  E-value=2.8e-11  Score=111.24  Aligned_cols=85  Identities=22%  Similarity=0.371  Sum_probs=68.1

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      +.|.|.|++|++|+.++      +|||.|.+  ++. +.||+++.++.||.|+|.|.|.....    -..+.|.|+    
T Consensus        11 ~sL~v~V~EAk~Lp~~~------~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~----   74 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK------RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLY----   74 (146)
T ss_pred             EEEEEEEEEccCCCCcC------CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEE----
Confidence            46899999999998775      79999999  777 67999999999999999999962222    135777776    


Q ss_pred             CCCCCCCcceEEEEEecc-C---CCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFD-R---YSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d-~---~~~d~~iG~~~i~l~~l~  429 (622)
                                     +.+ .   ..++++||.+.|++.++.
T Consensus        75 ---------------k~~~~~~~~~~~~~IG~V~Ip~~~l~  100 (146)
T cd04013          75 ---------------RESDKKKKKDKSQLIGTVNIPVTDVS  100 (146)
T ss_pred             ---------------EccCccccccCCcEEEEEEEEHHHhc
Confidence                           222 1   126799999999999997

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.25  E-value=8.5e-12  Score=152.17  Aligned_cols=113  Identities=15%  Similarity=0.266  Sum_probs=93.0

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .|.|+|+|++|.||.  +..|.+||||++.++++.    +.||++++++.||.|||.|.|.+..+...+ .|.|+|||+|
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~----~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~-~l~iev~d~d 2051 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGP----PRQTKVVSHSSSPEWKEGFTWAFDSPPKGQ-KLHISCKSKN 2051 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCC----cccccccCCCCCCCcccceeeeecCCCCCC-ceEEEEEecC
Confidence            489999999999998  557999999999995432    458999999999999999998887654333 4999999999


Q ss_pred             CCCCCceeEEEEECCCCCC-Ccccchhhhhhc--CCCCc-----ee-eEE
Q psy1415         579 RVTKNEVIGRLDLGGDKSS-GTALTHWTDVCN--SPRRQ-----IA-EWL  619 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~--~p~~~-----i~-~w~  619 (622)
                      .+++| .||.+.|+|.+.. +..+..||.|.+  +..++     |+ +|-
T Consensus      2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             ccCCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            99655 9999999998755 788899999996  33444     45 774

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.25  E-value=9.7e-11  Score=105.84  Aligned_cols=92  Identities=32%  Similarity=0.511  Sum_probs=71.5

Q ss_pred             EEEEEEEEeeCCCCCCC-CCCCCCCEEEEEEeCCC----ceeEeeeecCCC-CCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         315 VLVVTVIKCRDLFIKDT-PSGSSDPYVKVHLLPDK----QKVKTRVLRKTR-NPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~-~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~-nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      .|+|+|++|+||+..+. ..+.+||||++++.+.+    ..++|+++.++. ||.|+|+|.|. +...+  ...|.|.||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~   79 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVY   79 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEE
Confidence            68999999999988762 26789999999985432    379999988776 99999999997 32221  123445554


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |.+.. ++++||++.++++++.
T Consensus        80 -------------------d~~~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          80 -------------------DEDSG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             -------------------eCCCC-CCcEeEEEEEEhHHhc
Confidence                               88877 8999999999999985

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=99.24  E-value=1.3e-11  Score=138.62  Aligned_cols=108  Identities=25%  Similarity=0.426  Sum_probs=88.3

Q ss_pred             cEEEEEEEeecCCCCCCC------------------------------------------CCCCCcEEEEEEEeCCeEee
Q psy1415         500 NRFTIVVLKARNLPKMDV------------------------------------------TGLADPYVKVYLLYKGQRVA  537 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~------------------------------------------~g~sDPyV~v~l~~~~~~~~  537 (622)
                      |.|.++|++|++|++||.                                          .+.+||||++.+  ++..  
T Consensus        14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L--g~~r--   89 (868)
T PLN03008         14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV--PQAT--   89 (868)
T ss_pred             cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE--CCcc--
Confidence            678889999998886432                                          246799999999  3322  


Q ss_pred             EeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415         538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       538 ~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i  615 (622)
                      +.||+++++++||+|||.|.|.+...   ...|+|+|||+|.++ +++||++.|++.++. +...+.|++|++.-++.+
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~  164 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPP  164 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence            55899999999999999999999853   235999999999997 589999999998654 567889999999877655

>PLN03008 Phospholipase D delta

Probab=99.24  E-value=7.3e-11  Score=132.59  Aligned_cols=82  Identities=26%  Similarity=0.382  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCC
Q psy1415         334 GSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY  412 (622)
Q Consensus       334 ~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~  412 (622)
                      +++||||+|.+  ++. +.||+++++++||+|||+|.|.+..+    ...|.|.|+                   |+|.+
T Consensus        75 ~tSDPYV~I~L--g~~rv~RTrVi~n~~NPvWNE~F~f~vah~----~s~L~f~Vk-------------------D~D~~  129 (868)
T PLN03008         75 ITSDPYVTVVV--PQATLARTRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVK-------------------DDDVF  129 (868)
T ss_pred             CCCCceEEEEE--CCcceeeEEeCCCCCCCCcceeEEEEecCC----CceEEEEEE-------------------cCCcc
Confidence            46899999999  444 78999999999999999999973322    235666666                   88888


Q ss_pred             CCcceeeEEEEeCCccccCCceeeEEEEeec
Q psy1415         413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFD  443 (622)
Q Consensus       413 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~  443 (622)
                      + +++||++.++++++....  ....|+.+.
T Consensus       130 g-aD~IG~a~IPL~~L~~Ge--~vd~Wl~Ll  157 (868)
T PLN03008        130 G-AQIIGTAKIPVRDIASGE--RISGWFPVL  157 (868)
T ss_pred             C-CceeEEEEEEHHHcCCCC--ceEEEEEcc
Confidence            6 589999999999987322  233455543

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.21  E-value=8.6e-11  Score=97.47  Aligned_cols=84  Identities=40%  Similarity=0.709  Sum_probs=68.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|.|++|+||+..+ ..+.+|||+++++.... ..++|++++++.||.|+|.|.|. +...+...  |.|.|       
T Consensus         1 L~v~I~~a~~L~~~~-~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~~--l~~~V-------   69 (85)
T PF00168_consen    1 LTVTIHSARNLPSKD-SNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDLDS--LSFEV-------   69 (85)
T ss_dssp             EEEEEEEEESSSSSS-TTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCGTE--EEEEE-------
T ss_pred             CEEEEEEEECCCCcc-cCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eecccccc--eEEEE-------
Confidence            689999999999987 68899999999995433 37999999999999999999997 45444322  55554       


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEE
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVF  422 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~  422 (622)
                                  ||++..+++++||++.
T Consensus        70 ------------~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   70 ------------WDKDSFGKDELIGEVK   85 (85)
T ss_dssp             ------------EEETSSSSEEEEEEEE
T ss_pred             ------------EECCCCCCCCEEEEEC
Confidence                        5999988899999873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1326|consensus

Probab=99.16  E-value=2.7e-11  Score=135.29  Aligned_cols=256  Identities=23%  Similarity=0.342  Sum_probs=151.9

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      ..++|++++|.+|.+.| .+|.+|||+++.+  +++  .-++..+.+|+||+|++.|++...-+.   ...+.+.||   
T Consensus       613 ~LvrVyvv~A~~L~p~D-~ng~adpYv~l~l--Gk~~~~d~~~yip~tlnPVfgkmfel~~~lp~---ek~l~v~vy---  683 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSD-GNGDADPYVKLLL--GKKRTLDRAHYIPNTLNPVFGKMFELECLLPF---EKDLIVEVY---  683 (1105)
T ss_pred             eeEEEEEEEeeeccccC-CCCCcCceeeeee--ccchhhhhhhcCcCCCCcHHHHHHHhhcccch---hhcceeEEE---
Confidence            45779999999999999 7999999999999  665  467888999999999998887522222   234455555   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC------CceeeE------EEEeeccC--------CCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY------GSTLHF------VVFSFDRY--------SRDDIV  451 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~------~~~~~~------~~~~l~~~--------~~~~~~  451 (622)
                                      |+|..++|+.||+..++|+.--..      +-..+.      .|..-..+        ...+..
T Consensus       684 ----------------d~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~  747 (1105)
T KOG1326|consen  684 ----------------DHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP  747 (1105)
T ss_pred             ----------------EeecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCC
Confidence                            899999999999999988643211      000111      11111000        000111


Q ss_pred             eeEEEee--------ec---ccccC----------------cccccccccCccc-----cc---cccCCCCceeeecccc
Q psy1415         452 GEVFYSL--------QS---FETYG----------------HSLSFCRDIQPRN-----LR---IKSQGRGEILLSLCWQ  496 (622)
Q Consensus       452 g~~~~~l--------~~---~~~~~----------------~~~~~~~~~~~~~-----~~---~~~~~~G~l~i~l~~~  496 (622)
                      +..++.-        ..   .+...                ..+.....+-|..     +.   .....+|++.+-+.+.
T Consensus       748 ~P~~~~e~~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~f  827 (1105)
T KOG1326|consen  748 RPYYSYEVSAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFF  827 (1105)
T ss_pred             CCeecCCcceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhc
Confidence            1100000        00   00000                0000111111111     10   1123456665544332


Q ss_pred             ---------------CCccEEEEEEEeecCCCCCCCC----CCCCcEEEEEEEeCCeEeeEeeeeeccCCC----CCeee
Q psy1415         497 ---------------PAANRFTIVVLKARNLPKMDVT----GLADPYVKVYLLYKGQRVAKKKTHVKKRTL----NPVYN  553 (622)
Q Consensus       497 ---------------~~~g~L~V~I~~A~~L~~~d~~----g~sDPyV~v~l~~~~~~~~~~kT~~~~~tl----nP~wn  553 (622)
                                     |....++|.|..-.+....|..    ..+|.||+--+.  |....+++|.+.++++    |..|.
T Consensus       828 p~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~--gdee~kq~tdvhyrsl~ge~~fnwr  905 (1105)
T KOG1326|consen  828 PKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVL--GDEEEKQKTDVHYRSLTGEGNFNWR  905 (1105)
T ss_pred             ccccCCCCCCCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccc--cchhhhcccceeeeeccCCccccee
Confidence                           2235799999888887665543    357999998774  3344577888887654    55566


Q ss_pred             cEEEEEe-cCCCCC------------------ccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         554 ESFVFEV-PADNLD------------------SVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       554 e~f~f~v-~~~~l~------------------~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      -.|.|+. +.++++                  -..|.|.|||.|.+++|+|||.++++|++.
T Consensus       906 ~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~  967 (1105)
T KOG1326|consen  906 FVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDM  967 (1105)
T ss_pred             eecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccChhhhhhheeechhhC
Confidence            5555542 111111                  123899999999999999999999999853

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.13  E-value=2.9e-10  Score=102.68  Aligned_cols=113  Identities=27%  Similarity=0.297  Sum_probs=81.0

Q ss_pred             EEEEEEEeeCCCCCCC-CCC--CCCCEEEEEEeCC-CceeEeeeecCCCC--CeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415         316 LVVTVIKCRDLFIKDT-PSG--SSDPYVKVHLLPD-KQKVKTRVLRKTRN--PIYNEEFTFTGITPHQLKGSTLHFVVFS  389 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~-~~~--~sDPyv~v~l~~~-~~~~kT~vi~~t~n--P~W~e~f~f~~~~~~~l~~~~L~~~V~d  389 (622)
                      |+|.|++|++++..+. ..|  .+||||++.+.+. ..+++|.+.++++|  |.||+.|.|. +..-......+...-++
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeecc
Confidence            7899999999654330 355  4999999999765 34899999999999  9999999986 33211112222233332


Q ss_pred             eccCC--CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         390 FDRYS--RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       390 ~d~~~--~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +...+  ..-....|.++|||+|.+++|++||++.++|+.+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~  122 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP  122 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence            22222  11244558889999999999999999999999887

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1327|consensus

Probab=99.12  E-value=8e-10  Score=118.64  Aligned_cols=188  Identities=24%  Similarity=0.361  Sum_probs=136.7

Q ss_pred             eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..+|+++++.+||.|.+.|... ...+..  +.++|.++|.+..               .......+|+|++.+.+.++.
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~v--Q~l~~~~~~~~~~---------------~~~l~~~dflg~~~c~l~~iv  103 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEKV--QLLRFEVYDIDSR---------------TPDLSSADFLGTAECTLSQIV  103 (529)
T ss_pred             ccceeeeeccCCccceeeechh-heeeee--eeEEEEEeecCCc---------------cCCcchhcccceeeeehhhhh
Confidence            5599999999999999988764 444443  3577777733321               123456799999999999887


Q ss_pred             cCCceeeEEEEeeccCCCCccceeEEEeeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEee
Q psy1415         430 TYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKA  509 (622)
Q Consensus       430 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A  509 (622)
                      ....                                  ......+.+    ......|.|.+.+.-...........++|
T Consensus       104 s~~~----------------------------------~~~~l~~~~----~~~~~~g~iti~aee~~~~~~~~~~~~~~  145 (529)
T KOG1327|consen  104 SSSG----------------------------------LTGPLLLKP----GKNAGSGTITISAEEDESDNDVVQFSFRA  145 (529)
T ss_pred             hhhh----------------------------------hhhhhhccc----CccCCcccEEEEeecccccCceeeeeeee
Confidence            1111                                  000000000    03346677877776555555666677889


Q ss_pred             cCCCCCCCCCCCCcEEEEEEE-eCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC----ccEEEEEEEEcCCCCCCc
Q psy1415         510 RNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD----SVSLELLLLDWDRVTKNE  584 (622)
Q Consensus       510 ~~L~~~d~~g~sDPyV~v~l~-~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~----~~~L~i~V~D~d~~~~d~  584 (622)
                      ++|.+.|..+++|||..++-. .++.+...++|.++++++||.|..   |.+....++    +.++.|.+||++..++++
T Consensus       146 ~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~  222 (529)
T KOG1327|consen  146 KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHD  222 (529)
T ss_pred             eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcC
Confidence            999999999999999999876 367777899999999999999994   666655555    367999999999999999


Q ss_pred             eeEEEEECCCCC
Q psy1415         585 VIGRLDLGGDKS  596 (622)
Q Consensus       585 ~LG~v~i~L~~~  596 (622)
                      +||+++-++...
T Consensus       223 ~ig~~~tt~~~~  234 (529)
T KOG1327|consen  223 LIGKFQTTLSEL  234 (529)
T ss_pred             ceeEecccHHHh
Confidence            999999887644

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.10  E-value=6.6e-10  Score=94.62  Aligned_cols=93  Identities=44%  Similarity=0.623  Sum_probs=77.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |.|.|++|++|......+..+|||++++.+.+  ....+|+.+.++.||.||+.|.|.+....  ...|.|+|||.+..+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~   77 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG   77 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence            67999999999888766788999999996543  33678999999999999999999987543  456999999999888


Q ss_pred             CCceeEEEEECCCCCCC
Q psy1415         582 KNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~~  598 (622)
                      .+.++|.+.+++.+...
T Consensus        78 ~~~~~G~~~~~l~~~~~   94 (101)
T smart00239       78 RDDFIGQVTIPLSDLLL   94 (101)
T ss_pred             CCceeEEEEEEHHHccc
Confidence            89999999999865443

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.06  E-value=4.3e-10  Score=137.59  Aligned_cols=90  Identities=22%  Similarity=0.393  Sum_probs=73.2

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      .|.|.|+|++|.||. .  .++.+||||++.+  +++ +.||++++++.||+|||+|.|..-.+.               
T Consensus      1979 ~G~L~V~V~~a~nl~-~--~~~~sdPyv~l~~--g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~--------------- 2038 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK-Q--SMGNTNAFCKLTL--GNGPPRQTKVVSHSSSPEWKEGFTWAFDSPP--------------- 2038 (2102)
T ss_pred             CcceEEEEeeccccc-c--ccCCCCCeEEEEE--CCCCcccccccCCCCCCCcccceeeeecCCC---------------
Confidence            589999999999998 3  3789999999999  655 789999999999999999997411111               


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                            .+.+|.|+|||+|.++ ++.||.+.|++.++.
T Consensus      2039 ------~~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv 2069 (2102)
T PLN03200       2039 ------KGQKLHISCKSKNTFG-KSSLGKVTIQIDRVV 2069 (2102)
T ss_pred             ------CCCceEEEEEecCccC-CCCCceEEEEHHHHh
Confidence                  2234566666999885 459999999999997

>KOG1011|consensus

Probab=99.06  E-value=1.5e-10  Score=123.28  Aligned_cols=106  Identities=25%  Similarity=0.423  Sum_probs=89.0

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      ...++++|++|.+|...|..|++||||.+.++..     +.||+++...+||+|||.|.|...+..   ..|.+.|||.|
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~kt-----krrtrti~~~lnpvw~ekfhfechnst---drikvrvwded  365 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT-----KRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDED  365 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeeccc-----chhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCc
Confidence            3578999999999999999999999999998332     678999999999999999999987653   24999999987


Q ss_pred             CC-----------CCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415         579 RV-----------TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       579 ~~-----------~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                      ..           .+|+|||+..|.+. ..+.+.+-||+|-..-++
T Consensus       366 ~dlksklrqkl~resddflgqtvievr-tlsgemdvwynlekrtdk  410 (1283)
T KOG1011|consen  366 NDLKSKLRQKLTRESDDFLGQTVIEVR-TLSGEMDVWYNLEKRTDK  410 (1283)
T ss_pred             ccHHHHHHHHhhhcccccccceeEEEE-ecccchhhhcchhhccch
Confidence            64           46899999999874 445677899999876553

>cd00030 C2 C2 domain

Probab=99.02  E-value=1.6e-09  Score=91.73  Aligned_cols=90  Identities=41%  Similarity=0.598  Sum_probs=75.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |.|.|++|++|......+..+|||.+.+.+    ....+|.++.++.||.||+.|.|.+...  ....|.|.|||++..+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~   74 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS   74 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC
Confidence            468999999998877778899999999944    2367899999999999999999998753  2345999999999888


Q ss_pred             CCceeEEEEECCCCCC
Q psy1415         582 KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~~  597 (622)
                      .+.+||.+.+++.+..
T Consensus        75 ~~~~ig~~~~~l~~l~   90 (102)
T cd00030          75 KDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCceeEEEEEeHHHhh
Confidence            8999999999987543

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1328|consensus

Probab=98.99  E-value=2e-10  Score=124.03  Aligned_cols=114  Identities=31%  Similarity=0.501  Sum_probs=96.7

Q ss_pred             CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCe--EeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~--~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ..|.+.+...|.-....|.|.|+.|+++.+.|.+|.+||||.+++++...  -...++|.++++|+||+|+|.|+|.|+.
T Consensus       932 ~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen  932 QFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred             cCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence            44666777777777788999999999999999999999999999976321  1235789999999999999999999997


Q ss_pred             CCCC--ccEEEEEEEEcCCCCCCceeEEEEECCCCCCC
Q psy1415         563 DNLD--SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       563 ~~l~--~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~  598 (622)
                      +...  ...|.|+|+|+|-.+.++|-|.+-+.|.++.|
T Consensus      1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence            6433  56799999999999999999999999986655

>KOG1328|consensus

Probab=98.96  E-value=3.6e-10  Score=122.17  Aligned_cols=111  Identities=32%  Similarity=0.618  Sum_probs=98.1

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-----eeEeeeecCCCCCeeeceeEEcc
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-----KVKTRVLRKTRNPIYNEEFTFTG  372 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-----~~kT~vi~~t~nP~W~e~f~f~~  372 (622)
                      ...|.+.+..+|......|.|.|+.|+++.+.| .+|.|||||.|.+.|.-.     +++|+|..+|+||+|+|.|+|. 
T Consensus       931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD-~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs- 1008 (1103)
T KOG1328|consen  931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLD-SNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS- 1008 (1103)
T ss_pred             CcCCceEEEEEeeccccchhhhhhccccccccC-CCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-
Confidence            346888999999999999999999999999999 899999999999966443     7899999999999999999998 


Q ss_pred             cCcccCC--CcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         373 ITPHQLK--GSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       373 ~~~~~l~--~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ++++...  ...+.|+|+                   |+|-+..+||-|++.+.|+.+.
T Consensus      1009 Vp~e~c~te~Am~~FTVM-------------------DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1009 VPPEPCSTETAMLHFTVM-------------------DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cCccccccccceEEEEee-------------------ccceecccccchHHHHhhCCCC
Confidence            7776544  455777777                   9999999999999999999987

>PLN02223 phosphoinositide phospholipase C

Probab=98.96  E-value=2.8e-09  Score=115.59  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=86.5

Q ss_pred             cEEEEEEEeecCCCCC-----CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKM-----DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~-----d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      ..|.|.|+.+.+++..     +.....||||+|.+.+-.....+++|.+..++.||.|||.|.|.|..+++.  .|.|.|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~V  486 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFEV  486 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEEE
Confidence            5699999999987521     223457999999997633333456787777899999999999999988766  489999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      +|+|..+.++|+|+..+|+. ...+++ ++.+|++.-|..+
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~-~Lr~Gy-R~VpL~~~~g~~l  525 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVS-ELIEGI-RAVPLYDERGKAC  525 (537)
T ss_pred             EecCCCCCCcEEEEEecchH-HhcCCc-eeEeccCCCcCCC
Confidence            99999889999999999995 444443 4557777766654

>PLN02952 phosphoinositide phospholipase C

Probab=98.92  E-value=4.6e-09  Score=116.23  Aligned_cols=113  Identities=19%  Similarity=0.263  Sum_probs=89.0

Q ss_pred             ccEEEEEEEeecCCCCC------CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415         499 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL  572 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~------d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i  572 (622)
                      ...|.|.|+.|.+++..      +.....||||++.+.+-.....+++|+++.++.||.||+.|.|.+..+++.  -+.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf  546 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRI  546 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEE
Confidence            45799999999987532      112335999999996533333577899999999999999999999887765  4899


Q ss_pred             EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      .|||+|..+.++|+|+..|++. ...+++ +|.+|.+.-|..+
T Consensus       547 ~V~D~D~~~~ddfiGq~~lPv~-~Lr~Gy-R~VpL~~~~G~~l  587 (599)
T PLN02952        547 EVREYDMSEKDDFGGQTCLPVS-ELRPGI-RSVPLHDKKGEKL  587 (599)
T ss_pred             EEEecCCCCCCCeEEEEEcchh-HhcCCc-eeEeCcCCCCCCC
Confidence            9999999989999999999995 444444 4889987777665

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.91  E-value=1.3e-08  Score=86.64  Aligned_cols=91  Identities=43%  Similarity=0.706  Sum_probs=71.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      +.+.|++|++|.... ..+..+||+++++.+.+ ..++|+++.++.||.|++.|.|. +....  ...|.|.|       
T Consensus         2 l~i~i~~~~~l~~~~-~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v-------   70 (101)
T smart00239        2 LTVKIISARNLPKKD-KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEV-------   70 (101)
T ss_pred             eEEEEEEeeCCCCCC-CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEE-------
Confidence            678999999998876 45678999999995432 48999999999999999999997 32221  33444444       


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  ||.+..+.+.++|.+.+++.++.
T Consensus        71 ------------~~~~~~~~~~~~G~~~~~l~~~~   93 (101)
T smart00239       71 ------------YDKDRFGRDDFIGQVTIPLSDLL   93 (101)
T ss_pred             ------------EecCCccCCceeEEEEEEHHHcc
Confidence                        48887778899999999998886

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG0905|consensus

Probab=98.90  E-value=1.2e-09  Score=123.65  Aligned_cols=127  Identities=27%  Similarity=0.456  Sum_probs=110.1

Q ss_pred             ccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-e
Q psy1415         482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-V  560 (622)
Q Consensus       482 ~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v  560 (622)
                      .+.-.|+++++++|.  .|.|+|.|.-|++|+....+...||||+.++.++.++..++||+++++|.||.|||.+.+. +
T Consensus      1508 p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred             ccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence            344567999999996  8999999999999988777888999999999998888889999999999999999999888 5


Q ss_pred             cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      +.+.+.+..|.++||..+.+..+.++|.+.|+|.+.. .++...||+|-..
T Consensus      1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            5556666779999999999989999999999997543 4666789998654

>KOG0905|consensus

Probab=98.83  E-value=6.9e-09  Score=117.54  Aligned_cols=109  Identities=33%  Similarity=0.524  Sum_probs=94.0

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      .-|+|.++++|.  .+.|.|.|.-+++|+-.. -+..+|||||.|++|+.+   +.||+++++|.||+|||...+..++.
T Consensus      1511 iggqV~LsIsY~--~~~LtImV~H~K~L~~Lq-dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1511 IGGQVKLSISYN--NGTLTIMVMHAKGLALLQ-DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred             cCceEEEEEEEc--CceEEEEhhhhccccccc-CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence            346999999996  899999999999996555 367799999999999886   89999999999999999999877777


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +.+....|.++||                   ..+.+..+.++|.+.|+|..+.
T Consensus      1588 ~~l~qReLQ~sVl-------------------s~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1588 EILQQRELQVSVL-------------------SNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred             hhhhhheeeeeee-------------------cccceeeeeeeeeeecchhhcc
Confidence            7776656666666                   8888888999999999999886

>cd00030 C2 C2 domain

Probab=98.82  E-value=2.9e-08  Score=83.98  Aligned_cols=89  Identities=47%  Similarity=0.712  Sum_probs=71.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS  394 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~  394 (622)
                      |.|.|++|++|.... ..+.++|||.+++  .+ ..++|.++.++.||.|++.|.|. +...  ....+.|.||      
T Consensus         1 l~v~i~~~~~l~~~~-~~~~~~~~v~v~~--~~~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~------   68 (102)
T cd00030           1 LRVTVIEARNLPAKD-LNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVW------   68 (102)
T ss_pred             CEEEEEeeeCCCCcC-CCCCCCcEEEEEe--ccCceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEE------
Confidence            468899999998765 5678999999999  44 68999999999999999999996 3321  1234555555      


Q ss_pred             CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   +.+..+.+.+||.+.+++..+.
T Consensus        69 -------------~~~~~~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          69 -------------DKDRFSKDDFLGEVEIPLSELL   90 (102)
T ss_pred             -------------ecCCCCCCceeEEEEEeHHHhh
Confidence                         8887777899999999999886

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011|consensus

Probab=98.82  E-value=4.7e-09  Score=112.17  Aligned_cols=103  Identities=28%  Similarity=0.483  Sum_probs=75.7

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      ++..+.++|+.|.+|..+| ..|++||||.+.+  ++.+.+|++|...+||+|||.|.|...+..    ..+.+.|||.|
T Consensus       293 wsakitltvlcaqgl~akd-ktg~sdpyvt~qv--~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded  365 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKD-KTGKSDPYVTAQV--GKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDED  365 (1283)
T ss_pred             cceeeEEeeeecccceecc-cCCCCCCcEEEee--cccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCc
Confidence            4678899999999999999 8999999999999  777999999999999999999999744322    34666666332


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .    |....++-    .=.-.+|||+|+..|.+..+.
T Consensus       366 ~----dlksklrq----kl~resddflgqtvievrtls  395 (1283)
T KOG1011|consen  366 N----DLKSKLRQ----KLTRESDDFLGQTVIEVRTLS  395 (1283)
T ss_pred             c----cHHHHHHH----HhhhcccccccceeEEEEecc
Confidence            1    11000000    001146899999999887775

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.75  E-value=3e-08  Score=109.69  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             ccEEEEEEEeecCCCCC------CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415         499 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL  572 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~------d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i  572 (622)
                      ...|.|.|+.+.+++..      +.....||||+|.+.+-+....+++|++..++.||.|||.|.|++..+++.  .|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf  545 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRV  545 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEE
Confidence            35799999999987522      223346999999997643333467888888999999999999999887776  4999


Q ss_pred             EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      .|+|+|..++++|+|+..|++. ...+++. .-.|++.-|..+
T Consensus       546 ~V~d~d~~~~ddfiGQ~~lPv~-~Lr~GyR-~V~L~~~~G~~l  586 (598)
T PLN02230        546 EVHEHDINEKDDFGGQTCLPVS-EIRQGIH-AVPLFNRKGVKY  586 (598)
T ss_pred             EEEECCCCCCCCEEEEEEcchH-HhhCccc-eEeccCCCcCCC
Confidence            9999999889999999999995 4444443 346666666554

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.73  E-value=4.5e-08  Score=108.18  Aligned_cols=113  Identities=16%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             ccEEEEEEEeecCCC--CC----CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415         499 ANRFTIVVLKARNLP--KM----DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL  572 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~--~~----d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i  572 (622)
                      ...|.|.|+.+.+++  ..    +.....||||+|.+.+-.....+++|+++.++.||.|||.|.|.+..+++.  .|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf  528 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL  528 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence            357999999998753  11    123456999999996432223467899999999999999999999887775  4999


Q ss_pred             EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      .|||+|..+.++|+|+..|++. ...+++. .-.|.+.-|..+
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~-~Lr~GyR-~V~L~~~~g~~l  569 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVW-ELSQGIR-AFPLHSRKGEKY  569 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchh-hhhCccc-eEEccCCCcCCC
Confidence            9999998888999999999995 4444443 335555555543

>KOG1031|consensus

Probab=98.72  E-value=2.6e-08  Score=105.45  Aligned_cols=109  Identities=30%  Similarity=0.545  Sum_probs=92.0

Q ss_pred             ccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeee-cEEEEEecCCCCCccEEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn-e~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      .|.|-|.|..||+||.||. ....|.||++++.+.     .+||.+..+++||.|| +-|.|.|...++++.+|.|++.|
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~-----t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld   76 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANT-----TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD   76 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEeccc-----ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence            3678999999999999986 456799999999443     6789999999999999 89999999888998899999999


Q ss_pred             cCCCCCCceeEEEEECCCCCC-----------CcccchhhhhhcCCC
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSS-----------GTALTHWTDVCNSPR  612 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~-----------~~~~~~W~~L~~~p~  612 (622)
                      +|..+.++-||.+.|+++.+-           +.-+..|+++++..+
T Consensus        77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih  123 (1169)
T KOG1031|consen   77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH  123 (1169)
T ss_pred             ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc
Confidence            999999999999999997211           244566888777654

>PLN02223 phosphoinositide phospholipase C

Probab=98.66  E-value=2.1e-07  Score=101.23  Aligned_cols=94  Identities=21%  Similarity=0.404  Sum_probs=71.7

Q ss_pred             CCEEEEEEEEeeCCCCC-----CCCCCCCCCEEEEEEeC--CC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415         313 ENVLVVTVIKCRDLFIK-----DTPSGSSDPYVKVHLLP--DK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH  384 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~-----d~~~~~sDPyv~v~l~~--~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~  384 (622)
                      ...|.|.|+.|.+++..     + ....+||||+|.+.+  .+ ..++|.+..++.||+|||+|.|.+..+ +|  ..|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~-~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-EL--AlLr  483 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIG-RLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DL--ALIS  483 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccC-CCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-Cc--eEEE
Confidence            35789999999987511     2 245689999999842  22 277888888999999999999974333 33  2455


Q ss_pred             EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |.|+                   |+|..+++++||+..+|+..+.
T Consensus       484 f~V~-------------------D~D~~~~ddfiGQ~~LPv~~Lr  509 (537)
T PLN02223        484 FEVY-------------------DYEVSTADAFCGQTCLPVSELI  509 (537)
T ss_pred             EEEE-------------------ecCCCCCCcEEEEEecchHHhc
Confidence            5555                   9988888999999999999997

>PLN02228 Phosphoinositide phospholipase C

Probab=98.65  E-value=1.1e-07  Score=104.79  Aligned_cols=113  Identities=14%  Similarity=0.218  Sum_probs=87.1

Q ss_pred             ccEEEEEEEeecCCCC---CC---CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEE
Q psy1415         499 ANRFTIVVLKARNLPK---MD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLE  571 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~---~d---~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~  571 (622)
                      ...|+|.|+.|.+|+.   .+   .....||||++.+.+......+++|+++.++.||.| |+.|.|.+..+++.  .|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lR  507 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLW  507 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEE
Confidence            3479999999998732   11   223479999999965333334678999988899999 99999999887766  489


Q ss_pred             EEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         572 LLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       572 i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      |.|+|+|..+.++|+|+..|+++ ...+++.| ..|++..|..+
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~-~Lr~GYR~-VpL~~~~G~~l  549 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLP-ELKSGVRA-VRLHDRAGKAY  549 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchh-HhhCCeeE-EEccCCCCCCC
Confidence            99999998889999999999995 44555543 37777776654

>KOG0169|consensus

Probab=98.64  E-value=5.4e-08  Score=107.67  Aligned_cols=109  Identities=21%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             EEEEEEEeecCCCCCCC----CCCCCcEEEEEEEeCCeEeeEeeee-eccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         501 RFTIVVLKARNLPKMDV----TGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~----~g~sDPyV~v~l~~~~~~~~~~kT~-~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      .|.|.|+.+.++++...    ...+||||.|.+-+-.....+.+|+ +..++.||.|+|.|+|.+.-+++.-  |.|.|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAl--iRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELAL--IRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeE--EEEEEE
Confidence            69999999997755432    3567999999986543444577898 5557899999999999999888874  999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                      |+|..++|+|+|+..||+. ...+++.|= .|++.-|.
T Consensus       695 d~d~~~~ddF~GQ~tlP~~-~L~~GyRhV-pL~~~~G~  730 (746)
T KOG0169|consen  695 DYDYIGKDDFIGQTTLPVS-ELRQGYRHV-PLLSREGE  730 (746)
T ss_pred             ecCCCCcccccceeeccHH-HhhCceeee-eecCCCCc
Confidence            9999999999999999985 445555442 34444443

>PLN02952 phosphoinositide phospholipase C

Probab=98.59  E-value=3.4e-07  Score=101.64  Aligned_cols=94  Identities=26%  Similarity=0.416  Sum_probs=71.6

Q ss_pred             CCEEEEEEEEeeCCCCC------CCCCCCCCCEEEEEEeC--C-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEE
Q psy1415         313 ENVLVVTVIKCRDLFIK------DTPSGSSDPYVKVHLLP--D-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTL  383 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~------d~~~~~sDPyv~v~l~~--~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L  383 (622)
                      ...|.|.|+.|.+|+..      + ....+||||+|.+..  . ...++|+++.++.||+|+|+|.|. +...++  ..+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~-~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--All  544 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFD-SYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALL  544 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCC-ccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEE
Confidence            35799999999887531      1 234569999999853  1 237899999999999999999997 333333  235


Q ss_pred             EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +|.|+                   |+|..+.++++|+..+++..|.
T Consensus       545 rf~V~-------------------D~D~~~~ddfiGq~~lPv~~Lr  571 (599)
T PLN02952        545 RIEVR-------------------EYDMSEKDDFGGQTCLPVSELR  571 (599)
T ss_pred             EEEEE-------------------ecCCCCCCCeEEEEEcchhHhc
Confidence            55555                   9988888999999999999997

>PLN02270 phospholipase D alpha

Probab=98.54  E-value=1.8e-07  Score=105.68  Aligned_cols=110  Identities=16%  Similarity=0.275  Sum_probs=89.2

Q ss_pred             cEEEEEEEeecCCCCCC------------------CCCCCCcEEEEEEEeCCeEeeEeeeeeccCC-CCCeeecEEEEEe
Q psy1415         500 NRFTIVVLKARNLPKMD------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEV  560 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d------------------~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~t-lnP~wne~f~f~v  560 (622)
                      |.|.++|++|++|++++                  ..+.+||||.+.+  ++..  .-||+++.+. .||.|||.|.+++
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~--v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKAR--VGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcE--EEEEeecCCCCCCCccccceEEee
Confidence            78999999999998742                  1356799999999  3333  5699999884 6999999999998


Q ss_pred             cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhhhcCCCCceee
Q psy1415         561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDVCNSPRRQIAE  617 (622)
Q Consensus       561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~~~p~~~i~~  617 (622)
                      ....   ..|+|+|.|.+.++ ..+||.+.|+..++ .+...+.|+++++.-++.+..
T Consensus        84 ah~~---~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~  137 (808)
T PLN02270         84 AHMA---SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHG  137 (808)
T ss_pred             ccCc---ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCC
Confidence            7543   24999999999887 45999999998764 467899999999998877643

>KOG1264|consensus

Probab=98.50  E-value=3.2e-07  Score=100.89  Aligned_cols=92  Identities=27%  Similarity=0.448  Sum_probs=75.8

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeee-cEEEEEecCCCCCccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wn-e~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      -.|.|.|+.||+|+... .|...|||.|++.+......+ ++|.+..+.+||+|| +.|+|.|..+++.  -|.|.|+|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYEE 1141 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEecc
Confidence            36899999999998443 456679999999774433334 455666688999999 9999999988766  499999999


Q ss_pred             CCCCCCceeEEEEECCC
Q psy1415         578 DRVTKNEVIGRLDLGGD  594 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~  594 (622)
                      |+++...|||++..|+.
T Consensus      1142 Dmfs~~~FiaqA~yPv~ 1158 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVK 1158 (1267)
T ss_pred             cccCCcceeeeeecchh
Confidence            99999999999999985

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.47  E-value=9.7e-07  Score=97.91  Aligned_cols=94  Identities=24%  Similarity=0.350  Sum_probs=72.3

Q ss_pred             CCEEEEEEEEeeCCCCC------CCCCCCCCCEEEEEEeC--CCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEE
Q psy1415         313 ENVLVVTVIKCRDLFIK------DTPSGSSDPYVKVHLLP--DKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTL  383 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~------d~~~~~sDPyv~v~l~~--~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L  383 (622)
                      ...|.|.|+.|.+++..      + ....+||||+|.+..  .+. ..+|++..++.||+|||+|.|.+. ..+|  ..|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~-~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~-vPEL--All  543 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFD-SYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLA-VPEL--ALL  543 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCC-CCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEE-cCce--eEE
Confidence            46799999999987421      2 234679999999853  222 789999999999999999999733 3343  345


Q ss_pred             EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +|.|+                   |+|...+++|+|+..+++..|.
T Consensus       544 Rf~V~-------------------d~d~~~~ddfiGQ~~lPv~~Lr  570 (598)
T PLN02230        544 RVEVH-------------------EHDINEKDDFGGQTCLPVSEIR  570 (598)
T ss_pred             EEEEE-------------------ECCCCCCCCEEEEEEcchHHhh
Confidence            55555                   8888889999999999999997

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.46  E-value=1.8e-07  Score=76.14  Aligned_cols=100  Identities=25%  Similarity=0.387  Sum_probs=80.1

Q ss_pred             EEEEeecCCCCCCCCCC-CCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCC
Q psy1415         504 IVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK  582 (622)
Q Consensus       504 V~I~~A~~L~~~d~~g~-sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~  582 (622)
                      ++++.++||.-....|. ...|++-.+.-+  +-...||.......||.|.|+|.|.+...++.++.|.|+|+.  ...+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            67888999965543332 344776655322  123678999999999999999999999999999999999998  4568


Q ss_pred             CceeEEEEECCCCCCCcccchhhhh
Q psy1415         583 NEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       583 d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      .+.||.+.+++++...++..||.++
T Consensus        79 Ke~iG~~sL~l~s~geeE~~HW~e~  103 (103)
T cd08684          79 KRTIGECSLSLRTLSTQETDHWLEI  103 (103)
T ss_pred             cceeeEEEeecccCCHHHhhhhhcC
Confidence            8999999999998889999999864

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.45  E-value=1.7e-06  Score=95.79  Aligned_cols=95  Identities=22%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             CCEEEEEEEEeeCCC----CCC-CCCCCCCCEEEEEEe--CCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415         313 ENVLVVTVIKCRDLF----IKD-TPSGSSDPYVKVHLL--PDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH  384 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~----~~d-~~~~~sDPyv~v~l~--~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~  384 (622)
                      ...|.|.|+.|.+++    ... ......||||+|.+.  +.+ .+++|+++.++.||+|+|+|.|.+. ..+|  ..|+
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~-~PeL--AllR  527 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT-VPEL--ALLR  527 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEE-cCce--eEEE
Confidence            357899999998753    111 023567999999984  222 3789999999999999999999733 3333  3455


Q ss_pred             EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |.|+                   |+|..+.+++||+..+++..|.
T Consensus       528 f~V~-------------------d~D~~~~ddfigq~~lPv~~Lr  553 (581)
T PLN02222        528 LEVH-------------------EYDMSEKDDFGGQTCLPVWELS  553 (581)
T ss_pred             EEEE-------------------ECCCCCCCcEEEEEEcchhhhh
Confidence            5555                   8888888999999999999997

>KOG1031|consensus

Probab=98.41  E-value=3.8e-07  Score=96.82  Aligned_cols=94  Identities=27%  Similarity=0.456  Sum_probs=82.5

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeec-eeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNE-EFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e-~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|-|.|..||+|+-+|......|.||++.+  .+..+||.|-.+++||.||. -|.|. ++..+|++..|.|.+.    
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~--~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~ll----   75 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF--ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLL----   75 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEe--cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEe----
Confidence            5688899999999999866677899999999  77799999999999999995 57776 7888888877777777    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |+|.++.+|-||.+.|+++-+.
T Consensus        76 ---------------d~dtysandaigkv~i~idpl~   97 (1169)
T KOG1031|consen   76 ---------------DHDTYSANDAIGKVNIDIDPLC   97 (1169)
T ss_pred             ---------------cccccccccccceeeeccChHH
Confidence                           9999999999999999998775

>PLN02228 Phosphoinositide phospholipase C

Probab=98.40  E-value=3e-06  Score=93.69  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=71.5

Q ss_pred             CCEEEEEEEEeeCCCC---CC--CCCCCCCCEEEEEEeCC--C-ceeEeeeecCCCCCee-eceeEEcccCcccCCCcEE
Q psy1415         313 ENVLVVTVIKCRDLFI---KD--TPSGSSDPYVKVHLLPD--K-QKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTL  383 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~---~d--~~~~~sDPyv~v~l~~~--~-~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L  383 (622)
                      ...|.|+|+.|.+|+.   .+  ......||||+|.+.+-  + ..++|+++.++.||+| +|+|.|.+. ..+|  ..|
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~-~pEL--A~l  506 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLR-VPEL--ALL  506 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEE-cCce--eEE
Confidence            3479999999998731   11  02345899999998532  2 2789999999999999 999999733 3333  345


Q ss_pred             EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +|.|+                   |+|..+.+++||+..++++.|.
T Consensus       507 Rf~V~-------------------D~d~~~~d~figq~~lPv~~Lr  533 (567)
T PLN02228        507 WFKVQ-------------------DYDNDTQNDFAGQTCLPLPELK  533 (567)
T ss_pred             EEEEE-------------------eCCCCCCCCEEEEEEcchhHhh
Confidence            56655                   8888888999999999999996

>KOG2060|consensus

Probab=98.39  E-value=3.3e-07  Score=93.58  Aligned_cols=122  Identities=27%  Similarity=0.477  Sum_probs=98.6

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ...|.+++.+.  ...|.+.|.|++|++|..... .-.++|||+|+++.++....+.+|+...+|+.|.|-+...|.-. 
T Consensus       255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-  331 (405)
T KOG2060|consen  255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-  331 (405)
T ss_pred             cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-
Confidence            34566666553  356899999999999976543 33679999999999998888999999999999999988877643 


Q ss_pred             CCCCccEEEEEEE-EcCCCCCCceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415         563 DNLDSVSLELLLL-DWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVCNS  610 (622)
Q Consensus       563 ~~l~~~~L~i~V~-D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~  610 (622)
                        .....|.++|| |+.++.++.|+|.++|-+.++.  ......||+|++.
T Consensus       332 --p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  332 --PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             --CCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence              34667999999 7888889999999999987543  4578899999876

>PLN02270 phospholipase D alpha

Probab=98.38  E-value=4.3e-06  Score=94.80  Aligned_cols=91  Identities=20%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             CCEEEEEEEEeeCCCCCC-----------------CCCCCCCCEEEEEEeCCCc-eeEeeeecCC-CCCeeeceeEEccc
Q psy1415         313 ENVLVVTVIKCRDLFIKD-----------------TPSGSSDPYVKVHLLPDKQ-KVKTRVLRKT-RNPIYNEEFTFTGI  373 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d-----------------~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t-~nP~W~e~f~f~~~  373 (622)
                      .|.|.++|++|++|++++                 ...+.+||||.|.+  ++. +.||+++.+. .||.|+|.|...+-
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEeec
Confidence            478999999999998631                 01356899999999  554 9999999885 59999999987633


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...    ..+.|.|.                   |.+.++ ..+||.+.++..++.
T Consensus        85 h~~----~~v~f~vk-------------------d~~~~g-~~~ig~~~~p~~~~~  116 (808)
T PLN02270         85 HMA----SNIIFTVK-------------------DDNPIG-ATLIGRAYIPVEEIL  116 (808)
T ss_pred             cCc----ceEEEEEe-------------------cCCccC-ceEEEEEEEEHHHhc
Confidence            322    46889998                   666665 459999999999987

>KOG0169|consensus

Probab=98.36  E-value=2e-06  Score=95.56  Aligned_cols=94  Identities=27%  Similarity=0.449  Sum_probs=72.1

Q ss_pred             CEEEEEEEEeeCCCCCCC---CCCCCCCEEEEEEe--CCCc-eeEee-eecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDT---PSGSSDPYVKVHLL--PDKQ-KVKTR-VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~---~~~~sDPyv~v~l~--~~~~-~~kT~-vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      ..|.|.|+.|.++.....   .+..+||||.|.+.  |.+. ..+|+ +..++-||.|+|+|+|. +...+|.  -|+|.
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~  692 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFE  692 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEE
Confidence            369999999997754321   22458999999863  2333 88999 55688899999999998 5555553  35555


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |+                   |+|..++|+|+|+..+|+..|.
T Consensus       693 V~-------------------d~d~~~~ddF~GQ~tlP~~~L~  716 (746)
T KOG0169|consen  693 VH-------------------DYDYIGKDDFIGQTTLPVSELR  716 (746)
T ss_pred             EE-------------------ecCCCCcccccceeeccHHHhh
Confidence            55                   9999999999999999999997

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.29  E-value=2.6e-06  Score=72.64  Aligned_cols=83  Identities=20%  Similarity=0.302  Sum_probs=63.1

Q ss_pred             EEEEEEeecCCCCCC---CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         502 FTIVVLKARNLPKMD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       502 L~V~I~~A~~L~~~d---~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      |.|.|..|+|+...+   ..+..||||.+++  ++..  +.||++   +.||.|||.|.|+|.  .  ...+.|.|||..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~--kaRTr~---srnd~WnE~F~i~Vd--k--~nEiel~VyDk~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVE--RARTKP---SRNDRWNEDFEIPVE--K--NNEEEVIVYDKG   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEE--EEeccC---CCCCcccceEEEEec--C--CcEEEEEEEeCC
Confidence            578999999998777   5788899999999  4333  667755   589999999999994  2  335999999974


Q ss_pred             CCCCCceeEEEEECCCCC
Q psy1415         579 RVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~  596 (622)
                      . ...-.+|..=+.|+++
T Consensus        70 ~-~~~~Pi~llW~~~sdi   86 (109)
T cd08689          70 G-DQPVPVGLLWLRLSDI   86 (109)
T ss_pred             C-CeecceeeehhhHHHH
Confidence            3 3445678777777643

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.29  E-value=1.4e-06  Score=71.10  Aligned_cols=91  Identities=25%  Similarity=0.401  Sum_probs=70.7

Q ss_pred             EEEEEEeeCCCCCCCCCCCCCCEEEEEEe-CCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         317 VVTVIKCRDLFIKDTPSGSSDPYVKVHLL-PDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       317 ~V~vi~a~~L~~~d~~~~~sDPyv~v~l~-~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      .+++++|++|.-...-...+.-|++=-+. |..-.+||++.++..||+|+|+|.|. +...+|+...|.|+|+       
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~-------   73 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQ-------   73 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEee-------
Confidence            47899999996543122223345543332 23338899999999999999999998 8899999999999999       


Q ss_pred             CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  +  .+.+.+.||+|.++++++-
T Consensus        74 ------------~--~~~RKe~iG~~sL~l~s~g   93 (103)
T cd08684          74 ------------T--QTPRKRTIGECSLSLRTLS   93 (103)
T ss_pred             ------------c--cCCccceeeEEEeecccCC
Confidence                        4  6778999999999999875

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.25  E-value=2.8e-06  Score=72.47  Aligned_cols=84  Identities=20%  Similarity=0.383  Sum_probs=64.1

Q ss_pred             EEEEEEEeeCCCCCCC--CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         316 LVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~--~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      |.|+|..++|+...+.  +++.+||||.+++  ++. +.||++   +.||.|||+|.|. +..    ...+.+.||    
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~---srnd~WnE~F~i~-Vdk----~nEiel~Vy----   66 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKP---SRNDRWNEDFEIP-VEK----NNEEEVIVY----   66 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccC---CCCCcccceEEEE-ecC----CcEEEEEEE----
Confidence            5788999999987652  3678999999999  665 889988   4799999999997 332    235666666    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |... ...-.||-..+.+++|.
T Consensus        67 ---------------Dk~~-~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          67 ---------------DKGG-DQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             ---------------eCCC-CeecceeeehhhHHHHH
Confidence                           6532 34468999898888875

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264|consensus

Probab=98.12  E-value=9.6e-06  Score=89.60  Aligned_cols=92  Identities=30%  Similarity=0.472  Sum_probs=70.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeC---CCcee-EeeeecCCCCCeee-ceeEEcccCcccCCCcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP---DKQKV-KTRVLRKTRNPIYN-EEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~---~~~~~-kT~vi~~t~nP~W~-e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      -.|.|.|+.||+|+...  .+...|||.|.+.+   +..++ +|.|+.|.+||+|+ |.|.|.+..|+   -..|+|.|+
T Consensus      1065 ~~lsv~vigaRHL~k~g--r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG--RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVY 1139 (1267)
T ss_pred             eEEEEEEeeccccccCC--CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEe
Confidence            35788999999999663  55677999999753   22344 55566899999999 99999855544   245666666


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |.|.++...|||++.+|+..+.
T Consensus      1140 -------------------eeDmfs~~~FiaqA~yPv~~ik 1161 (1267)
T KOG1264|consen 1140 -------------------EEDMFSDPNFLAQATYPVKAIK 1161 (1267)
T ss_pred             -------------------cccccCCcceeeeeecchhhhh
Confidence                               8888887789999999999886

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.83  E-value=1.1e-05  Score=70.84  Aligned_cols=105  Identities=16%  Similarity=0.282  Sum_probs=74.3

Q ss_pred             EEEEEEeecCCCCCCC-------------CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC------
Q psy1415         502 FTIVVLKARNLPKMDV-------------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA------  562 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~-------------~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~------  562 (622)
                      |.|.|++|.+|+..-.             .-..++||++.+..-.+ ....+|+++.++.-|.|+..+.|+++.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~-~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE-KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC-CceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            4678889888854321             12259999999643111 136689999999999999999999762      


Q ss_pred             -------CCCCccEEEEEEEEcCCC----------CCCceeEEEEECCCCCC--Ccccchhhhh
Q psy1415         563 -------DNLDSVSLELLLLDWDRV----------TKNEVIGRLDLGGDKSS--GTALTHWTDV  607 (622)
Q Consensus       563 -------~~l~~~~L~i~V~D~d~~----------~~d~~LG~v~i~L~~~~--~~~~~~W~~L  607 (622)
                             +-+....|.|+||+....          .+|-.||.+.||+.++.  ..++..||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                   123345699999986542          24668999999997644  4777778764

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060|consensus

Probab=97.75  E-value=3.8e-05  Score=78.85  Aligned_cols=96  Identities=29%  Similarity=0.482  Sum_probs=79.0

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      ..+.+.|.+++|++|..+......++|||+||+++++.   +.+|+...+|.+|-|-....|. -+   .....|.+.||
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~s---p~~k~Lq~tv~  342 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QS---PPGKYLQGTVW  342 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cC---CCccEEEEEEe
Confidence            56899999999999987753344689999999987776   7899999999999999888775 22   33567888888


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                             +           |+.++..+.|+|.+.+-+.++.
T Consensus       343 -------g-----------dygRmd~k~fmg~aqi~l~eL~  365 (405)
T KOG2060|consen  343 -------G-----------DYGRMDHKSFMGVAQIMLDELN  365 (405)
T ss_pred             -------c-----------cccccchHHHhhHHHHHhhhhc
Confidence                   2           7778888899999999998886

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.69  E-value=0.0027  Score=66.51  Aligned_cols=251  Identities=15%  Similarity=0.158  Sum_probs=150.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR  395 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~  395 (622)
                      +.+.|++|+|++...    ...-.+..++  ++....|..+..+..|.|+....+. .+...+..              +
T Consensus         2 ivl~i~egr~F~~~~----~~~~vv~a~~--ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~--------------~   60 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP----RHPIVVEAKF--NGESLETDPVPHTESPQFNTELAWE-CDRKALKQ--------------H   60 (340)
T ss_pred             EEEEEecccCCCCCC----CccEEEEEEe--CCceeeecCCCCCCCceeecceeee-ccHHHHHH--------------h
Confidence            578899999998763    2345677778  8889999999999999999988775 55444332              2


Q ss_pred             CCCCcceEEEEEecc-CCCCcceeeEEEEeCCcc---ccCCceeeEEEEeeccC--CCCccceeEEEeeecccccCc---
Q psy1415         396 DDIGSTLHFVVFSFD-RYSRDDIVGEVFYSLQSF---ETYGSTLHFVVFSFDRY--SRDDIVGEVFYSLQSFETYGH---  466 (622)
Q Consensus       396 ~d~~~~l~i~v~d~d-~~~~d~~iG~~~i~l~~l---~~~~~~~~~~~~~l~~~--~~~~~~g~~~~~l~~~~~~~~---  466 (622)
                      .....||+++||-.+ ..+..+.||.+.++|..+   ..........|+.+.+.  .-.....++.+.+........   
T Consensus        61 r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~  140 (340)
T PF12416_consen   61 RLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTP  140 (340)
T ss_pred             hccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCC
Confidence            345677888888988 567889999999999998   43444678899999876  222223344444433222110   


Q ss_pred             cc-cccccc-Ccccc-------c--------cccCCCCceeeecc-ccCCccEEEEEEEeecCCCCCC----C--CCCCC
Q psy1415         467 SL-SFCRDI-QPRNL-------R--------IKSQGRGEILLSLC-WQPAANRFTIVVLKARNLPKMD----V--TGLAD  522 (622)
Q Consensus       467 ~~-~~~~~~-~~~~~-------~--------~~~~~~G~l~i~l~-~~~~~g~L~V~I~~A~~L~~~d----~--~g~sD  522 (622)
                      .. ...... .+...       .        ......|-+.+.-. .-.....|.|++..|.||..+-    .  .+...
T Consensus       141 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~  220 (340)
T PF12416_consen  141 DFESFKAKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSG  220 (340)
T ss_pred             ccccccccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCcc
Confidence            00 000000 00000       0        00112232222210 0112346889999999996551    1  12345


Q ss_pred             cEEEEEEEeCCeEeeEeeeeeccCCCCCeee--cEEEEEecCCC--CC-----ccEEEEEEEEcCCCCCCceeEEEEECC
Q psy1415         523 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN--ESFVFEVPADN--LD-----SVSLELLLLDWDRVTKNEVIGRLDLGG  593 (622)
Q Consensus       523 PyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn--e~f~f~v~~~~--l~-----~~~L~i~V~D~d~~~~d~~LG~v~i~L  593 (622)
                      -|....+.++     -..+.......+|.|-  +...|.|.+..  +.     ...|.|.++-     .+..||.+.|++
T Consensus       221 f~f~YsllGn-----~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l  290 (340)
T PF12416_consen  221 FFFYYSLLGN-----DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPL  290 (340)
T ss_pred             EEEEEEecCc-----EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEh
Confidence            5666666554     2246667777888764  44446665431  10     2237776666     366899999999


Q ss_pred             CCCC
Q psy1415         594 DKSS  597 (622)
Q Consensus       594 ~~~~  597 (622)
                      ....
T Consensus       291 ~~Ll  294 (340)
T PF12416_consen  291 QPLL  294 (340)
T ss_pred             hhcc
Confidence            7554

>PLN02352 phospholipase D epsilon

Probab=97.56  E-value=0.00014  Score=82.67  Aligned_cols=104  Identities=13%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             cEEEEEEEeecCCCCC----CC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKM----DV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~----d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      |.|.++|++|+-+...    +. ....||||.+.+  ++..  ..||   .+.-||.|||.|.+++....  +..|+|+|
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~--v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f~v   80 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKK--VAKT---SHEYDRVWNQTFQILCAHPL--DSTITITL   80 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcE--EecC---CCCCCCccccceeEEeeeec--CCcEEEEE
Confidence            6788999998733221    11 122399999999  4333  4466   55569999999999987442  22499999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCC-Ccc-cchhhhhhcCCCCceee
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSS-GTA-LTHWTDVCNSPRRQIAE  617 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~-~~~-~~~W~~L~~~p~~~i~~  617 (622)
                      .|     ...+||.+.|+...+. +.. .+.|+++++.-++.+..
T Consensus        81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~  120 (758)
T PLN02352         81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE  120 (758)
T ss_pred             ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC
Confidence            88     3779999999987654 434 89999999998887744

>PLN02964 phosphatidylserine decarboxylase

Probab=97.28  E-value=0.00038  Score=78.51  Aligned_cols=98  Identities=14%  Similarity=0.198  Sum_probs=77.0

Q ss_pred             cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      .+-.|.+.+++++|+    |+.   .|||+.+...  |.+  .+||.+.++|+||+||+...|.|......-  ..|.||
T Consensus        50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~--g~~--~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~  116 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF--GEQ--TFRTETSDSTDKPVWNSEKKLLLEKNGPHL--ARISVF  116 (644)
T ss_pred             ccccCeEEEEeehhh----hcc---CCcEEEEEEe--cce--eeeeccccccCCcccchhhceEeccCCcce--EEEEEE
Confidence            345688999999988    443   5998776542  333  789999999999999999999988766553  699999


Q ss_pred             EcCCCCCCceeEEEEECCCCCCCcccchhhh
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTD  606 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~  606 (622)
                      |++++++++++|.++++|.+........+++
T Consensus       117 ~~~~~s~n~lv~~~e~~~t~f~~kqi~elke  147 (644)
T PLN02964        117 ETNRLSKNTLVGYCELDLFDFVTQEPESACE  147 (644)
T ss_pred             ecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence            9999999999999999887666555544443

>PLN02352 phospholipase D epsilon

Probab=97.27  E-value=0.0023  Score=73.01  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=58.6

Q ss_pred             CCEEEEEEEEeeCCCCC----CCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEE
Q psy1415         313 ENVLVVTVIKCRDLFIK----DTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVV  387 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~----d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V  387 (622)
                      .|.|.++|++|+.+...    +......|||+.|.+  ++. +.||   .+..||.|+|.|...+-...   ...+.|.|
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~v   80 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITL   80 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEE
Confidence            35666777777643222    101122399999999  554 8888   66679999999987533222   24588888


Q ss_pred             EeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         388 FSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       388 ~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .                   |     .-.+||.+.++..++.
T Consensus        81 k-------------------~-----~~~~ig~~~~p~~~~~   98 (758)
T PLN02352         81 K-------------------T-----KCSILGRFHIQAHQIV   98 (758)
T ss_pred             e-------------------c-----CCeEEEEEEEEHHHhh
Confidence            8                   5     3689999999999987

>PLN02964 phosphatidylserine decarboxylase

Probab=96.99  E-value=0.00093  Score=75.42  Aligned_cols=88  Identities=18%  Similarity=0.321  Sum_probs=67.3

Q ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEE-EEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         310 QEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV-HLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       310 ~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v-~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      .+-.|++.+++++|+    ++  +  .|||+.+ ++  |.+++||.+.++|.||+||+...|. +.+.+..-  .+|.|+
T Consensus        50 ~~~~~~~~~~~~~~~----~~--~--~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~~--~~~~~~  116 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MK--F--KDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLL-LEKNGPHL--ARISVF  116 (644)
T ss_pred             ccccCeEEEEeehhh----hc--c--CCcEEEEEEe--cceeeeeccccccCCcccchhhceE-eccCCcce--EEEEEE
Confidence            345788999999988    54  2  4888555 46  7789999999999999999988886 55555432  466666


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |++++..++++|.+++++.++.
T Consensus       117 -------------------~~~~~s~n~lv~~~e~~~t~f~  138 (644)
T PLN02964        117 -------------------ETNRLSKNTLVGYCELDLFDFV  138 (644)
T ss_pred             -------------------ecCCCCHHHhhhheeecHhhcc
Confidence                               8888888888888888776665

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.92  E-value=0.0069  Score=56.66  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~  577 (622)
                      ..++|.|+.++++...   ..+|-||++.+-.++..... ..|..+.. .++.|||-+.|+|.-.++. +..|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            3588999999998754   34688999988776655432 23443433 6799999999998877755 56699999997


Q ss_pred             CCCC----CCceeEEEEECCCCCC
Q psy1415         578 DRVT----KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       578 d~~~----~d~~LG~v~i~L~~~~  597 (622)
                      ...+    ....||.+.++|.+..
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCC
Confidence            5421    2356999999998644

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1003|consensus

Probab=96.91  E-value=0.00015  Score=67.91  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             ccceeccccccCCccccccccccC---------------------CChh---hhh----cCCCCCccCcccchhhHHHHH
Q psy1415          49 AKKLALSQMTLKRPTAVRSPAAAG---------------------PNSH---YLK----KSPSPTYATPVANQRVEEYKR  100 (622)
Q Consensus        49 ~~kl~~~e~~l~r~e~~r~~~~e~---------------------~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~  100 (622)
                      -|||+.+|.+|+|+++ |+..+..                     ++.+   .+.    +||.....+++|..+.+....
T Consensus        10 nrri~~leeele~aqE-rl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar   88 (205)
T KOG1003|consen   10 NRRIQLLEEELDRAQE-RLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR   88 (205)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999 9998721                     1111   111    677777777888888888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1415         101 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL  133 (622)
Q Consensus       101 ~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~l  133 (622)
                      .+.++...|..+|.|||.||.....|+.++..+
T Consensus        89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~  121 (205)
T KOG1003|consen   89 KLVIIEGELERAEERAEAAESQSEELEEDLRIL  121 (205)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999887766

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.75  E-value=0.0082  Score=57.14  Aligned_cols=96  Identities=19%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW  577 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~  577 (622)
                      ..++|+|+.+.+|..  .....+-||++.+-.++.... ...|..+.-..++.|||.+.|+|.-.++. +..|.|+||+.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            358999999999986  224467788888877666543 23454544456799999999998877655 56699999996


Q ss_pred             CCCC----------------CCceeEEEEECCCCCC
Q psy1415         578 DRVT----------------KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       578 d~~~----------------~d~~LG~v~i~L~~~~  597 (622)
                      ....                ....||.+.++|.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            5422                2468999999998644

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.72  E-value=0.0094  Score=55.79  Aligned_cols=97  Identities=18%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEe-eeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWD  578 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~-kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d  578 (622)
                      .++|.+....++... .....+-||.+.+-.++...... .|.......++.|||.+.|++.-.++. +..|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            577888888877652 12346778888877766543333 333333336899999999998766655 566999999977


Q ss_pred             CCC--CCceeEEEEECCCCCCC
Q psy1415         579 RVT--KNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       579 ~~~--~d~~LG~v~i~L~~~~~  598 (622)
                      ..+  ++..||.+.++|.+..+
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~~~  109 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDYKG  109 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcccC
Confidence            654  56899999999986543

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=96.38  E-value=0.0023  Score=56.58  Aligned_cols=104  Identities=23%  Similarity=0.329  Sum_probs=66.8

Q ss_pred             EEEEEEEeeCCCCC-------CC-----CCCCCCCEEEEE--EeCCCceeEeeeecCCCCCeeeceeEEcccCc------
Q psy1415         316 LVVTVIKCRDLFIK-------DT-----PSGSSDPYVKVH--LLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP------  375 (622)
Q Consensus       316 L~V~vi~a~~L~~~-------d~-----~~~~sDPyv~v~--l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~------  375 (622)
                      |.|.|++|.+|+..       +.     ..-..++|+++.  ++++++..+|+++-++.-|.|+-.++|. .+.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCC
Confidence            35677888888632       10     011247899998  4567779999999999999999999996 321      


Q ss_pred             -------ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         376 -------HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       376 -------~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                             +.|....+.|.||+.+..+..+..         .....+|-++|.+.||+.+|.
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~---------~~~~~~DilLG~v~IPl~~Ll  131 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTI---------KIETSGDILLGTVKIPLRDLL  131 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCcccccee---------ccCcCCcEEEEEEEeeHHHHh
Confidence                   122334455555543333222210         011245679999999999997

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.38  E-value=0.015  Score=54.63  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             CCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         519 GLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       519 g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      ..+|-||.+.+-.++.... ...|..+.-+..+.|||.+.|+|.-.++. +..|.|+|||.+..++...+|.+.++|.+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4568899998877665432 23555555566788999999999877765 667999999987666778999999999864


Q ss_pred             C
Q psy1415         597 S  597 (622)
Q Consensus       597 ~  597 (622)
                      .
T Consensus       108 ~  108 (159)
T cd08397         108 D  108 (159)
T ss_pred             C
Confidence            3

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.35  E-value=0.014  Score=55.61  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEe-eeeecc----CCCCCeeecEEEEEecCCCCC-ccEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKK----RTLNPVYNESFVFEVPADNLD-SVSLELL  573 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~-kT~~~~----~tlnP~wne~f~f~v~~~~l~-~~~L~i~  573 (622)
                      ..+.|+|..+++++........|-||.+.+-.+++..... .|....    ....+.|||.+.|++.-.++. +..|.|+
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            4688999999999887765667899999987776654322 232211    123577999999998766654 5669999


Q ss_pred             EEEcCCCC---------CCceeEEEEECCCCCC
Q psy1415         574 LLDWDRVT---------KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       574 V~D~d~~~---------~d~~LG~v~i~L~~~~  597 (622)
                      ||+....+         .+..||.+.++|.+..
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~  120 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR  120 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcch
Confidence            99976544         4579999999998644

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.28  E-value=0.028  Score=53.57  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDR  579 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~  579 (622)
                      .++|.|..+. .+..+......-||++.+-.++......+|.....+.++.|||-+.|+|.-.++. +..|.|+||+...
T Consensus        11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            5777888876 3333333334567877776665555455677776677899999999998877765 5669999999632


Q ss_pred             CC----------------CCceeEEEEECCCCCC
Q psy1415         580 VT----------------KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       580 ~~----------------~d~~LG~v~i~L~~~~  597 (622)
                      .+                .+..||-+.+.|.+-.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~  123 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR  123 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCC
Confidence            11                2568999999998544

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.37  E-value=0.062  Score=49.40  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=55.7

Q ss_pred             CcEEEEEEEeCCeEee--EeeeeeccCC-CCCeeecEEEEEecCCCCC-ccEEEEEEEEcCCCCCC----ceeEEEEECC
Q psy1415         522 DPYVKVYLLYKGQRVA--KKKTHVKKRT-LNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKN----EVIGRLDLGG  593 (622)
Q Consensus       522 DPyV~v~l~~~~~~~~--~~kT~~~~~t-lnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~~~~d----~~LG~v~i~L  593 (622)
                      +-||.+.+-.++....  ...|....-+ .++.|||.+.|+|.-.++. +..|.|+||..+.....    ..||.+.++|
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            3477787777777655  3356666655 7999999999998766654 56699999997766555    7999999999


Q ss_pred             CCCCC
Q psy1415         594 DKSSG  598 (622)
Q Consensus       594 ~~~~~  598 (622)
                      .+..+
T Consensus        83 Fd~~~   87 (142)
T PF00792_consen   83 FDYRG   87 (142)
T ss_dssp             B-TTS
T ss_pred             ECCCC
Confidence            86543

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG1265|consensus

Probab=94.75  E-value=0.039  Score=62.69  Aligned_cols=85  Identities=26%  Similarity=0.399  Sum_probs=64.1

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEe--CCeEeeEeeeeecc-CCCCCeee-cEEEEE-ecCCCCCccEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLY--KGQRVAKKKTHVKK-RTLNPVYN-ESFVFE-VPADNLDSVSLELLL  574 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~--~~~~~~~~kT~~~~-~tlnP~wn-e~f~f~-v~~~~l~~~~L~i~V  574 (622)
                      +.+.|.|+++.=|..++    +..||.|.+-+  .......+||++.. +++||+|+ +.|.|. |..+++.  +|.|.|
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiav  776 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAV  776 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeeee
Confidence            57999999999887665    34899999854  22222356777777 56999999 678887 5556665  499999


Q ss_pred             EEcCCCCCCceeEEEEECCC
Q psy1415         575 LDWDRVTKNEVIGRLDLGGD  594 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~  594 (622)
                      |+..    ..+||+-.++++
T Consensus       777 yeEg----gK~ig~RIlpvd  792 (1189)
T KOG1265|consen  777 YEEG----GKFIGQRILPVD  792 (1189)
T ss_pred             eccC----Cceeeeeccchh
Confidence            9964    569999999885

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.64  E-value=0.21  Score=47.62  Aligned_cols=108  Identities=17%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~  388 (622)
                      ..++|+++.+.+|...   ...++-||++.+..|++    ...|+......++.|+|.+.|. +...+|. ...|.|.||
T Consensus         8 ~~f~i~i~~~~~~~~~---~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~   83 (173)
T cd08693           8 EKFSITLHKISNLNAA---ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCEEEEEEEeccCccC---CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence            4688999999999762   23467888888766666    3456655556779999999997 6666654 456778888


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      +-.....+.....-  .- ..+.-+.+..||.+.++|=+.
T Consensus        84 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          84 EVSKKAKGKRSRKN--QT-KKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             Eecccccccccccc--cc-cccccCcceEEEEEeEEEEcc
Confidence            32211100000000  00 001112357899998887553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.57  E-value=0.2  Score=46.81  Aligned_cols=93  Identities=19%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~  388 (622)
                      ..++|.+....++...+  ....+-|+.+.+..|++    ...|.......++.|||...|. +...+|. +..|.|+||
T Consensus         8 ~~~~i~i~~~~~~~~~~--~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~   84 (156)
T cd08380           8 FNLRIKIHGITNINLLD--SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY   84 (156)
T ss_pred             CCeEEEEEeeccccccC--CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence            35667777777775422  34467888888776665    3344444444689999999997 5555543 345666666


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCC--CcceeeEEEEeCCcc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYS--RDDIVGEVFYSLQSF  428 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~--~d~~iG~~~i~l~~l  428 (622)
                                         +.+..+  .+..||.+.++|=+.
T Consensus        85 -------------------~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          85 -------------------AVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             -------------------EEecCCCCcceEEEEEeEEeEcc
Confidence                               655443  468999999987554

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.51  E-value=0.1  Score=54.75  Aligned_cols=101  Identities=21%  Similarity=0.327  Sum_probs=77.7

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC-----CCccEEEEEEEE
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN-----LDSVSLELLLLD  576 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~-----l~~~~L~i~V~D  576 (622)
                      +.|.|+++++.+...   .-.-.+...+  +|.   ...|..+..+-.|.||..+.|.+....     .+..+|++++|-
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~--ng~---~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a   73 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKF--NGE---SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA   73 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEe--CCc---eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence            578899999997652   2344677776  444   446888889999999999999876442     335679999999


Q ss_pred             cC-CCCCCceeEEEEECCCCC---CC---cccchhhhhhcC
Q psy1415         577 WD-RVTKNEVIGRLDLGGDKS---SG---TALTHWTDVCNS  610 (622)
Q Consensus       577 ~d-~~~~d~~LG~v~i~L~~~---~~---~~~~~W~~L~~~  610 (622)
                      .+ .-+..+.+|.+.++|...   ..   ....+||+|++.
T Consensus        74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             ecCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            88 557889999999999876   43   366789999988

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.46  E-value=0.0046  Score=62.12  Aligned_cols=88  Identities=26%  Similarity=0.330  Sum_probs=68.0

Q ss_pred             hhccceeccccccCCccccccccccCCChh---------------------------hhh-cCCCCCccCcccchhhHHH
Q psy1415          47 LEAKKLALSQMTLKRPTAVRSPAAAGPNSH---------------------------YLK-KSPSPTYATPVANQRVEEY   98 (622)
Q Consensus        47 e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---------------------------~l~-~lk~~~~~~~~~~~~e~~~   98 (622)
                      ...|||..+|.+|+++++ |+..+..+.-+                           .|. .|+......+.+..+.+.-
T Consensus        40 ~l~rri~~lE~~le~~ee-rL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~  118 (237)
T PF00261_consen   40 SLQRRIQLLEEELERAEE-RLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV  118 (237)
T ss_dssp             HHHHHHHHHHCCCHHHHC-CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999 99987433222                           001 4444445556667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy1415          99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEV  135 (622)
Q Consensus        99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~  135 (622)
                      ..++..+...|..||.|++.+|..+..|+.++..+..
T Consensus       119 ~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~  155 (237)
T PF00261_consen  119 ERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN  155 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999887643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.36  E-value=0.3  Score=45.68  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~  388 (622)
                      ..++|.++++.++.-.+    .+|-||.+.+..|++    ...|..+.. .++.|||-..|. +...+|. +..|.|.||
T Consensus         8 ~~~~v~i~~~~~~~~~~----~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~   81 (158)
T cd08398           8 SNLRIKILCATYVNVND----IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCeEEEEEeeccCCCCC----cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence            46889999999987543    368999998776665    234544443 679999999997 6666653 345666666


Q ss_pred             eeccCCCCCCCcceEEEEEeccCC----CCcceeeEEEEeCCcc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRY----SRDDIVGEVFYSLQSF  428 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~----~~d~~iG~~~i~l~~l  428 (622)
                                         +....    .....||.+.++|=+-
T Consensus        82 -------------------~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          82 -------------------SVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             -------------------EEecccCCCCceEEEEEEEEEEECC
Confidence                               54321    1235799998887553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG3837|consensus

Probab=94.24  E-value=0.058  Score=56.50  Aligned_cols=101  Identities=8%  Similarity=-0.048  Sum_probs=67.8

Q ss_pred             ccccccceeccccCCcccCCCCCCCCCccceeeec--CCCCCCCccccccCCCCCCCCCCCCCCCCCCC---CC-----c
Q psy1415         169 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSP--SPTYATPVASLVNSPTGSTNSNNGAGSNSHSP---IQ-----P  238 (622)
Q Consensus       169 ~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~--~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~---~~-----~  238 (622)
                      .+.-|-..++..+..|....+--.|.   ||++.+  ..+..+..||.|+++|.+|.|+|.|....-.-   ..     -
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~---fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f  441 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQ---FVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF  441 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHh---hhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence            33334444444455444443334455   887753  23345788999999999999999999976541   11     1


Q ss_pred             ccCCCeEEEEecccc-CCCcceeeeccCCCCCCCC
Q psy1415         239 CVALPGTVVITENEK-AAPLVLGVAGPTTAGNGPA  272 (622)
Q Consensus       239 ~~~~L~~~V~d~d~~-~~dd~lG~~~~~l~~l~~~  272 (622)
                      ....+.|++|....+ ..|.++|.+.+.|.-+...
T Consensus       442 kr~g~kfeifhkggf~rSdkl~gt~nikle~Len~  476 (523)
T KOG3837|consen  442 KRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENM  476 (523)
T ss_pred             HhcCeeEEEeeccccccccceeceeeeeehhhhcc
Confidence            235688999998866 5689999888877766543

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.10  E-value=0.36  Score=41.50  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDR  579 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~  579 (622)
                      +.+.+..+++.........++-||.+.+-.++.... ...|..+.-...+.|||.+.|++.-.++. +..|.|+||+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            556666777665443333358899998877666543 23455554456689999999998877655 5679999999643

Outlier of C2 family.

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.06  E-value=0.18  Score=47.35  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             CCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEEeeccCCCCCCCcceEEEEEe
Q psy1415         334 GSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVFSFDRYSRDDIGSTLHFVVFS  408 (622)
Q Consensus       334 ~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d~d~~~~~d~~~~l~i~v~d  408 (622)
                      ..+|-||.+.+..+++    ...|..+.-+..+.|||...|. +...+|. +..|.|.||                   +
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~-------------------~   87 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIW-------------------D   87 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEE-------------------E
Confidence            3478899998776665    3466666666779999999997 6666653 334555555                   7


Q ss_pred             ccCCCCcceeeEEEEeCCcc
Q psy1415         409 FDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       409 ~d~~~~d~~iG~~~i~l~~l  428 (622)
                      .+..++...||.+.++|=+-
T Consensus        88 ~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          88 VSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             ecCCCCceEEEEEEEeeECC
Confidence            76655678999999987543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG3837|consensus

Probab=92.91  E-value=0.027  Score=58.94  Aligned_cols=111  Identities=12%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC---------CCCccEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---------NLDSVSL  570 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~---------~l~~~~L  570 (622)
                      ..|.+.|.++.+++........|-|+++.+.--.....+.+|.+++.|.+|.|+|.|.+.|..-         -+....+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            3477778888887655434445889999874211223367899999999999999999998751         1113448


Q ss_pred             EEEEEEcCCC-CCCceeEEEEECCCCCCC-cccchhhhhhcC
Q psy1415         571 ELLLLDWDRV-TKNEVIGRLDLGGDKSSG-TALTHWTDVCNS  610 (622)
Q Consensus       571 ~i~V~D~d~~-~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~  610 (622)
                      .|++|....+ .+|.++|.+.+.|..+.. .+....++|++.
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG  488 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG  488 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence            9999997654 689999999999864433 344446666654

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=92.44  E-value=1.4  Score=40.89  Aligned_cols=110  Identities=18%  Similarity=0.277  Sum_probs=74.7

Q ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415         311 EKENVLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS  389 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d-~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d  389 (622)
                      +....|.+.|+.|+-+-.-- ...+..+..+.+++.-+++.++|+.+.-+.+|.|+|.|-|. +........        
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~--------   76 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAG--------   76 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEE-ecccccccc--------
Confidence            34567889999998775432 01156677788887668889999999999999999999997 443321110        


Q ss_pred             eccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         390 FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       390 ~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .+..+.-....+|.+.+-..|..+...++|+-.+.-..+.
T Consensus        77 ~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL  116 (156)
T PF15627_consen   77 STATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL  116 (156)
T ss_pred             cchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence            0011112445667777667777777788998887777665

>KOG1265|consensus

Probab=92.17  E-value=0.45  Score=54.53  Aligned_cols=86  Identities=26%  Similarity=0.493  Sum_probs=63.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEe--CCCc---eeEeeeec-CCCCCeeec-eeEEcccCcccCCCcEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLL--PDKQ---KVKTRVLR-KTRNPIYNE-EFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~--~~~~---~~kT~vi~-~t~nP~W~e-~f~f~~~~~~~l~~~~L~~~  386 (622)
                      +.+.|+||.|.-|..++     ...||.|.+.  |.+.   .++|+++. +..||+|+| .|.|.-+-..+|.  .|+|.
T Consensus       703 ~t~sV~VISgqFLSdrk-----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRia  775 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK-----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIA  775 (1189)
T ss_pred             eeEEEEEEeeeeccccc-----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeee
Confidence            46889999999997665     3489999873  3332   67888764 788999995 5788545555543  46666


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   +.    ...+||+-.++++.+.
T Consensus       776 vy-------------------eE----ggK~ig~RIlpvd~l~  795 (1189)
T KOG1265|consen  776 VY-------------------EE----GGKFIGQRILPVDGLN  795 (1189)
T ss_pred             ee-------------------cc----CCceeeeeccchhccc
Confidence            66                   53    3579999999998886

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=91.43  E-value=1.8  Score=40.16  Aligned_cols=104  Identities=22%  Similarity=0.384  Sum_probs=69.3

Q ss_pred             cCCccEEEEEEEeecCCCCCC--CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC-------
Q psy1415         496 QPAANRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-------  566 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d--~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~-------  566 (622)
                      .|....|.+.|..++-....-  ..|..+..+.+.+.-.++   +++|+.+..+.+|.|+|.|-|++......       
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATT   81 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhH
Confidence            345567899999987553211  116667777777744443   88999999999999999999999866311       


Q ss_pred             ----ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415         567 ----SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR  613 (622)
Q Consensus       567 ----~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~  613 (622)
                          ...|.+-|.-.|..+...++|+-.+.           |-..+.++..
T Consensus        82 lls~~~pihivli~~d~~~~~~Lv~s~~ld-----------WR~vL~s~~~  121 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDPSGETTLVGSHFLD-----------WRKVLCSGNG  121 (156)
T ss_pred             hhcCCCceEEEEEEecCCCceEeeeeceeh-----------HHHHhccCCC
Confidence                12366667666665555666665554           5555555543

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.38  E-value=0.92  Score=43.08  Aligned_cols=104  Identities=19%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeec----CCCCCeeeceeEEcccCcccC-CCcEE
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLR----KTRNPIYNEEFTFTGITPHQL-KGSTL  383 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~----~t~nP~W~e~f~f~~~~~~~l-~~~~L  383 (622)
                      ...+.|.|..+.+++... .....|-|+.+.+..|++    ...|+...    -...+.|||...|. +...+| .+..|
T Consensus         7 ~~~~~i~v~~~h~~~~~~-~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL   84 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTW-VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRL   84 (171)
T ss_pred             cccEEEEEEEeecCChHH-hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEE
Confidence            345778888999998764 344578999998776766    23443221    12357799999997 555554 34567


Q ss_pred             EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      .|++|+......+..         + ..-..+..||.+.++|=+.
T Consensus        85 ~itl~~~~~~~~~~~---------~-~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          85 VLTLYGTTSSPDGGS---------N-KQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEEecCCcccc---------c-cccccceEEEEEeEeeEcc
Confidence            777773221110000         0 0001457999999887554

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.93  E-value=3  Score=39.80  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=47.6

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEEe
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVFS  389 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d  389 (622)
                      ..++|.|..+.++. .+ ......-||++.+..|+.   ..+|.....+.+|.|||...|. +...+|. ...|.|.||+
T Consensus        10 ~~friki~~~~~~~-~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~   86 (178)
T cd08399          10 RKFRVKILGIDIPV-LP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCEEEEEEeecccC-cC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence            35677777776443 22 233344677777665555   3466666667789999999997 6666654 4567788873

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=90.13  E-value=3.2  Score=38.01  Aligned_cols=73  Identities=22%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             CCEEEEEEeCCCc-----eeEeeeecCC-CCCeeeceeEEcccCcccCC-CcEEEEEEEeeccCCCCCCCcceEEEEEec
Q psy1415         337 DPYVKVHLLPDKQ-----KVKTRVLRKT-RNPIYNEEFTFTGITPHQLK-GSTLHFVVFSFDRYSRDDIGSTLHFVVFSF  409 (622)
Q Consensus       337 DPyv~v~l~~~~~-----~~kT~vi~~t-~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~  409 (622)
                      +-||.+.+-.|++     +..|....-+ .+|.|+|...|. +...+|. +..|.|.||                   ..
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~-------------------~~   62 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLY-------------------GV   62 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEE-------------------EE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEE-------------------Ee
Confidence            3467777665665     3366666665 799999999997 6666553 455667776                   55


Q ss_pred             cCCCCc----ceeeEEEEeCCccc
Q psy1415         410 DRYSRD----DIVGEVFYSLQSFE  429 (622)
Q Consensus       410 d~~~~d----~~iG~~~i~l~~l~  429 (622)
                      +.....    ..||.+.++|=+..
T Consensus        63 ~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   63 DSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             ECSTTT--EEEEEEEEEEESB-TT
T ss_pred             cCCCccccceeEEEEEEEEeECCC
Confidence            544443    79999999986653

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=89.02  E-value=14  Score=35.71  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=45.6

Q ss_pred             eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCC
Q psy1415         350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ  426 (622)
Q Consensus       350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~  426 (622)
                      .++|-|...+.+|.|+|++.+. ++.+...+.-|.|.++++.-...               ....+..+|-+.++|=
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~---------------kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEA---------------KDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccc---------------cCCCCCceEEEEEeee
Confidence            7888898999999999999997 88888888889999884332100               1112457888888873

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=87.90  E-value=6.7  Score=35.62  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=56.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCC------CCCccEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPAD------NLDSVSLEL  572 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~------~l~~~~L~i  572 (622)
                      ..+.+.|.+..+++.      .+..+.+.+..+........|.... .+..-.||+.|.+.+...      .+....+.|
T Consensus         7 f~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    7 FQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            357888999998876      2334444443222211012222222 345678999999986542      255667999


Q ss_pred             EEEEcCCCCCCceeEEEEECCCC
Q psy1415         573 LLLDWDRVTKNEVIGRLDLGGDK  595 (622)
Q Consensus       573 ~V~D~d~~~~d~~LG~v~i~L~~  595 (622)
                      .|+....-++...||.+.|+|.+
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLae  103 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAE  103 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHH
Confidence            99987543444799999999974

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=87.72  E-value=1.3  Score=42.50  Aligned_cols=58  Identities=14%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             eEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC--CCceeEEEEECCC
Q psy1415         537 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT--KNEVIGRLDLGGD  594 (622)
Q Consensus       537 ~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~--~d~~LG~v~i~L~  594 (622)
                      ..++|.+...+.+|.|+|++.+.|+.+...+..|.|+++....-.  ....+|-.-++|-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            356888999999999999999999998888888999888743321  1257888888874

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1

Probab=87.24  E-value=1.1  Score=34.56  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415          97 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ  127 (622)
Q Consensus        97 ~~~~~i~~l~~~lkeae~rae~ae~~~~~l~  127 (622)
                      +-|.+++.|+.+|.++|.|++.||...+.++
T Consensus        29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k   59 (60)
T PF11471_consen   29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK   59 (60)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4688899999999999999999999887654

B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.90  E-value=3.9  Score=39.51  Aligned_cols=59  Identities=14%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC-CC---CceeEEEEECCC
Q psy1415         536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-TK---NEVIGRLDLGGD  594 (622)
Q Consensus       536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~-~~---d~~LG~v~i~L~  594 (622)
                      ...++|.+.+.+.+|.|+|++.+.|+.+...+..|.|+++..... .+   ...+|-.-++|-
T Consensus        52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            346688888999999999999999999888888899999875432 12   246887777774

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=86.19  E-value=8.5  Score=37.04  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=34.3

Q ss_pred             eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415         350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS  389 (622)
Q Consensus       350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d  389 (622)
                      .++|-+...+.+|.|+|++.+. ++.+...+.-|.|..++
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH   92 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRH   92 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEE
Confidence            6789999999999999999997 88888888888888873

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=85.99  E-value=2.5  Score=40.57  Aligned_cols=58  Identities=17%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             EeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC-CC--ceeEEEEECCCC
Q psy1415         538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT-KN--EVIGRLDLGGDK  595 (622)
Q Consensus       538 ~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~-~d--~~LG~v~i~L~~  595 (622)
                      ...|.+..++.+|.|+|+|.+.++.+...+..|.|++++...-. ++  ..+|-+-++|.+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            55788888999999999999999988777888999999965432 22  699999999975

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=85.07  E-value=0.26  Score=42.40  Aligned_cols=25  Identities=28%  Similarity=0.655  Sum_probs=1.9

Q ss_pred             eeehhhHHHHHhhheeeeeeeeccC
Q psy1415          20 LGLGLAGLVFVATVCLATCYCRRRS   44 (622)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~k   44 (622)
                      +||+|-.|+|.+-+++.+|||+||.
T Consensus        27 aGIGiL~VILgiLLliGCWYckRRS   51 (118)
T PF14991_consen   27 AGIGILIVILGILLLIGCWYCKRRS   51 (118)
T ss_dssp             -SSS---------------------
T ss_pred             ccceeHHHHHHHHHHHhheeeeecc
Confidence            4666666666666888889999875

>KOG1452|consensus

Probab=85.01  E-value=2.3  Score=43.44  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=55.0

Q ss_pred             EEEECCCCEEEEEEEEeeCCCCCCC-CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415         307 IKYQEKENVLVVTVIKCRDLFIKDT-PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH  384 (622)
Q Consensus       307 l~~~~~~~~L~V~vi~a~~L~~~d~-~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~  384 (622)
                      +.....+|.|.+.++.+|+|+.... .+-.-+-||.+..  +.+ ..+|.+.....--.|.|+|...++.     ...+.
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-----~~vl~  116 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHDVVN-----IEVLH  116 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceeeccc-----ceeee
Confidence            3444568999999999999975431 2345688998887  554 6777777777777899999886443     34577


Q ss_pred             EEEEeec
Q psy1415         385 FVVFSFD  391 (622)
Q Consensus       385 ~~V~d~d  391 (622)
                      +.||.|+
T Consensus       117 ~lvySW~  123 (442)
T KOG1452|consen  117 YLVYSWP  123 (442)
T ss_pred             EEEeecC
Confidence            8888433

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=84.39  E-value=6.6  Score=37.14  Aligned_cols=69  Identities=13%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415         522 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS  596 (622)
Q Consensus       522 DPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~  596 (622)
                      .-|+++.+  +++.+.+.+.+.......-.||+.|.+.|..  .. .+|.|.||.... ..+..|+.+.+++...
T Consensus        38 ~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~  106 (168)
T PF15625_consen   38 RYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGS  106 (168)
T ss_pred             eEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence            45788877  7776555555555445556689999999864  22 359999999776 6789999999999743

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.25  E-value=0.25  Score=45.48  Aligned_cols=89  Identities=24%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             hccceeccccccCCccccccccccCCChhhhhcCCCCCccCcccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415          48 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVAN---QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK  124 (622)
Q Consensus        48 ~~~kl~~~e~~l~r~e~~r~~~~e~~~~~~l~~lk~~~~~~~~~~---~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~  124 (622)
                      ..+|+..+|.+|+..++ ++..+..+.-+.=+.....+....+.+   +.-+..+..++..+.+|.+++.+|+..||.|.
T Consensus        40 L~~K~~~lE~eld~~~~-~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~  118 (143)
T PF12718_consen   40 LQKKNQQLEEELDKLEE-QLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK  118 (143)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45778888888888877 655443222220000000011111112   22334455577777889999999999999999


Q ss_pred             HHHHhhhhhcccc
Q psy1415         125 KLQKEVDRLEVSG  137 (622)
Q Consensus       125 ~l~~~~~~le~~~  137 (622)
                      .|+.+.+..|..-
T Consensus       119 ~le~~~~~~E~k~  131 (143)
T PF12718_consen  119 ALEQERDQWEEKY  131 (143)
T ss_pred             HHHhhHHHHHHHH
Confidence            9999988887653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG1452|consensus

Probab=81.07  E-value=2.6  Score=43.00  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=70.1

Q ss_pred             cCCccEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEE
Q psy1415         496 QPAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL  573 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~  573 (622)
                      ....|.|.++++.+++|.....  +-..+-||.+..  +  +..+.||.+......-.|.|.|..++-+.    ..+.+-
T Consensus        47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~----~vl~~l  118 (442)
T KOG1452|consen   47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--D--RQHPARTRVRSSGPGFAWAEDFKHDVVNI----EVLHYL  118 (442)
T ss_pred             ecccceEEEEEecccccccChhccCceeeeeeeeee--c--ccCccccccccCCCCccchhhceeecccc----eeeeEE
Confidence            4457899999999999965432  334577888876  2  23355666666566667999999887633    236677


Q ss_pred             EEEcCCCCCCc--eeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         574 LLDWDRVTKNE--VIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       574 V~D~d~~~~d~--~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      ||.|+.-.++.  ..|-  |.++.+..+.-+|-+.|+-.|++++
T Consensus       119 vySW~pq~RHKLC~~g~--l~~~~v~rqspd~~~Al~lePrgq~  160 (442)
T KOG1452|consen  119 VYSWPPQRRHKLCHLGL--LEAFVVDRQSPDRVVALYLEPRGQP  160 (442)
T ss_pred             EeecCchhhccccccch--hhhhhhhhcCCcceeeeecccCCCC
Confidence            88887643333  3553  3333343444455566666677665

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=80.83  E-value=9.8  Score=32.54  Aligned_cols=71  Identities=24%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415         316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF  388 (622)
Q Consensus       316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~  388 (622)
                      +.+.+....+..... ....+|-||.+.+..|++    ...|....-...+.|||...|. +...+|. ...|.|.+|
T Consensus        13 ~~~~~~~~~~~~l~~-~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~   88 (100)
T smart00142       13 LVITIALIHGIPLNW-SRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIY   88 (100)
T ss_pred             eEEEEEEeeCCCccc-ccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEE
Confidence            555666666665543 122258899998776665    3356555556669999999997 6666654 345666666

Outlier of C2 family.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=80.60  E-value=0.87  Score=38.80  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=21.9

Q ss_pred             cccceEeeehhhHHHHHhhh--eeeeeeeeccC
Q psy1415          14 VSGHTVLGLGLAGLVFVATV--CLATCYCRRRS   44 (622)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k   44 (622)
                      .++-+|+||.++++++++.+  ++.|||.+|||
T Consensus        63 ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k   95 (96)
T PTZ00382         63 LSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK   95 (96)
T ss_pred             cccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence            34568999999888666443  46677777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	622
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-43
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-12
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		3e-34
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		5e-34
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-33
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		8e-27
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		5e-25
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		5e-25
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		7e-25
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		5e-20
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		4e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-17
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		2e-11
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		4e-17
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-11
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		9e-17
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		2e-11
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		1e-16
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		1e-11
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		1e-15
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		8e-11
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		6e-13
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		3e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		7e-13
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		3e-07
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		9e-13
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		9e-13
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		5e-12
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		3e-11
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-08
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		5e-11
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		6e-07
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		5e-11
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-09
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		7e-11
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		4e-10
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-08
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		4e-10
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		3e-09
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		5e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		5e-09
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-04
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		5e-08
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		4e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		9e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-07
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-07
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-07
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		5e-07
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		4e-05
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		1e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		4e-05
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		4e-05
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		5e-05
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		2e-04

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 58/325 (17%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
           KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V R
Sbjct: 4   KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 62
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KT NP++NE+  FT   P+                                         
Sbjct: 63  KTLNPVFNEQ--FTFKVPYS---------------------------------------- 80
Query: 418 VGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPR 477
                      E  G TL   V+ FDR+S+ DI+GE    + + + +GH     RD+Q  
Sbjct: 81  -----------ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD-FGHVTEEWRDLQSA 128
Query: 478 NLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 537
             + + +  G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ 
Sbjct: 129 E-KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 187
Query: 538 KKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS 597
           KKKT +KK TLNP YNESF FEVP                 ++ KN+ IG++ +G + S+
Sbjct: 188 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-ST 246
Query: 598 GTALTHWTDVCNSPRRQIAEWLTYR 622
           G  L HW+D+  +PRR IA+W T +
Sbjct: 247 GAELRHWSDMLANPRRPIAQWHTLQ 271

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
           S+  G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T 
Sbjct: 2   SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 59
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTAL 601
           V ++TLNPV+NE F F+VP                 R +K+++IG   +  +    G   
Sbjct: 60  VHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 119
Query: 602 THWTDVCNSPRRQ 614
             W D+ ++ + +
Sbjct: 120 EEWRDLQSAEKEE 132

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++KKKTHVKK
Sbjct: 16  RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
            T N V+NE FVF++P                 R ++NEVIGRL LG   + G+   HW 
Sbjct: 76  CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSGGGHWK 134
Query: 606 DVCNSPRRQIAEW 618
           ++C+ PRRQIA+W
Sbjct: 135 EICDFPRRQIAKW 147

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 156/335 (46%), Gaps = 74/335 (22%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVK 352
           G A    G+I F ++Y    + LVV +++  DL  KD+ +G SDPYVK++LLPD K+K +
Sbjct: 1   GEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDS-NGFSDPYVKIYLLPDRKKKFQ 59
Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412
           T+V RKT NPI+NE F F+ +   +L    LHF V+ F                   DR+
Sbjct: 60  TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDF-------------------DRF 99
Query: 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDI---------VGEVFYSLQSFET 463
           SR D++G+V           + L       DR    DI         +GE+ +SL    T
Sbjct: 100 SRHDLIGQVVLD--------NLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT 151
Query: 464 YGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADP 523
            G                        LL++    A+N      LKA     MD+TG +DP
Sbjct: 152 AG------------------------LLTVTIIKASN------LKA-----MDLTGFSDP 176
Query: 524 YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKN 583
           YVK  L+ +G+R+ K+KT +KK TLNP YNE+ VF+V                   +  N
Sbjct: 177 YVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHN 236
Query: 584 EVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           EVIG   +G + +      HW ++  +PR+ +  W
Sbjct: 237 EVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHW 271

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 154/328 (46%), Gaps = 74/328 (22%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKT 359
           G+I F ++Y    + LVV +++  DL  KD+ +G SDPYVK++LLPD K+K +T+V RKT
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKDS-NGFSDPYVKIYLLPDRKKKFQTKVHRKT 65
Query: 360 RNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
            NPI+NE F F+ +   +L    LHF V+ F                   DR+SR D++G
Sbjct: 66  LNPIFNETFQFS-VPLAELAQRKLHFSVYDF-------------------DRFSRHDLIG 105
Query: 420 EVFYSLQSFETYGSTLHFVVFSFDRYSRDDI---------VGEVFYSLQSFETYGHSLSF 470
           +V           + L       DR    DI         +GE+ +SL    T G     
Sbjct: 106 QVVLD--------NLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG----- 152
Query: 471 CRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL 530
                              LL++    A+N      LKA     MD+TG +DPYVK  L+
Sbjct: 153 -------------------LLTVTIIKASN------LKA-----MDLTGFSDPYVKASLI 182
Query: 531 YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLD 590
            +G+R+ K+KT +KK TLNP YNE+ VF+V                   +  NEVIG   
Sbjct: 183 SEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCR 242
Query: 591 LGGDKSSGTALTHWTDVCNSPRRQIAEW 618
           +G + +      HW ++  +PR+ +  W
Sbjct: 243 VGPEAADPHGREHWAEMLANPRKPVEHW 270

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score =  118 bits (296), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+LLSLC+ P+AN   + ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT  KK
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           R LNP++NESF F++P                 ++++N+VIG++ L   KS    + HW 
Sbjct: 62  RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW-KSGPGEVKHWK 120
Query: 606 DVCNSPRRQIAEW 618
           D+   PR+ +A+W
Sbjct: 121 DMIARPRQPVAQW 133

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT +KK 
Sbjct: 5   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNP YNESF FEVP                 ++ KN+ IG++ +G + S+G  L HW+D
Sbjct: 65  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 123
Query: 607 VCNSPRRQIAEWLTYR 622
           +  +PRR IA+W T +
Sbjct: 124 MLANPRRPIAQWHTLQ 139

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT +KK 
Sbjct: 4   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNP YNESF FEVP                 ++ KN+ IG++ +G + S+G  L HW+D
Sbjct: 64  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 122
Query: 607 VCNSPRRQIAEWLTYR 622
           +  +PRR IA+W T +
Sbjct: 123 MLANPRRPIAQWHTLQ 138

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT +KK 
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
           TLNP YNESF FEVP                 ++ KN+ IG++ +G + S+G  L HW+D
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 130
Query: 607 VCNSPRRQIAEWLTYR 622
           +  +PRR IA+W T +
Sbjct: 131 MLANPRRPIAQWHTLQ 146

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 303 IFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRN 361
           +FF ++Y  +    VV + + R L   D  S +SDPY+K+ +LP+K+ KVKTRVLRKT +
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLD 70
Query: 362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           P ++E FTF GI   Q++   LHF + SFDR+SRDDI
Sbjct: 71  PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDI 107

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRT 547
           +  SL +      F + + +AR LP MD   + +DPY+K+ +L   ++  K KT V ++T
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTIL--PEKKHKVKTRVLRKT 68
Query: 548 LNPVYNESFVFE-VPAXXXXXXXXXXXXXXXXRVTKNEVIGRL 589
           L+P ++E+F F  +P                 R +++++IG +
Sbjct: 69  LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEV 111

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
           KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V R
Sbjct: 19  KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           KT NP++NE+FTF  +   +L G TL   V+ FDR+S+ DI
Sbjct: 78  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 117

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T V ++
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
           TLNPV+NE F F+VP                 R +K+++IG   +  +    G     W 
Sbjct: 79  TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 138
Query: 606 DV 607
           D+
Sbjct: 139 DL 140

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
           KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V R
Sbjct: 2   KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 60
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           KT NP++NE+FTF  +   +L G TL   V+ FDR+S+ DI
Sbjct: 61  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 100

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T V ++
Sbjct: 4   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 61
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
           TLNPV+NE F F+VP                 R +K+++IG   +  +    G     W 
Sbjct: 62  TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 121
Query: 606 DV 607
           D+
Sbjct: 122 DL 123

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLRK 358
           LG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V RK
Sbjct: 28  LGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHRK 86
Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           T NP++NE+FTF  +   +L G TL   V+ FDR+S+ DI
Sbjct: 87  TLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 125

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T V ++
Sbjct: 29  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 86
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
           TLNPV+NE F F+VP                 R +K+++IG   +  +    G     W 
Sbjct: 87  TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 146
Query: 606 DV 607
           D+
Sbjct: 147 DL 148

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
           KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+K  +T+V R
Sbjct: 19  KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           KT NP++NE+FTF  +   +L G TL   V+ FDR+S+ DI
Sbjct: 78  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 117

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T V ++
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRL 589
           TLNPV+NE F F+VP                 R +K+++IG  
Sbjct: 79  TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEF 121

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRK 358
           LG+I F + Y  +E+ L V ++K ++L  KD  SG+SDP+VK++LLPDK+ K++T+V RK
Sbjct: 12  LGRIQFSVGYNFQESTLTVKIMKAQELPAKDF-SGTSDPFVKIYLLPDKKHKLETKVKRK 70
Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
             NP +NE F F G    ++    L+  V  +DR+SR+D
Sbjct: 71  NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRND 109

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G I  S+ +    +  T+ ++KA+ LP  D +G +DP+VK+YLL    +  K +T VK++
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDKKHKLETKVKRK 70
Query: 547 TLNPVYNESFVFE-VPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTAL-THW 604
            LNP +NE+F+FE  P                 R ++N+ IG + +  +K   T + T W
Sbjct: 71  NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130
Query: 605 TDV 607
            D+
Sbjct: 131 KDL 133

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQ 349
           D +    LG + F + Y +  + L  T+I+ + L   D+ +G +DPYVK+HLLP      
Sbjct: 6   DSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDS-NGLADPYVKLHLLPGASKSN 64
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           K++T+ LR TRNP++NE   + GIT   ++  TL   V   D++  ++ IG T
Sbjct: 65  KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 117

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G +  SL +    +     +++A+ L  MD  GLADPYVK++LL    +  K +T   + 
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 547 TLNPVYNESFVF 558
           T NPV+NE+  +
Sbjct: 74  TRNPVWNETLQY 85

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQ 349
           D +    LG + F + Y +  + L  T+I+ + L   D+ +G +DPYVK+HLLP      
Sbjct: 8   DSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDS-NGLADPYVKLHLLPGASKSN 66
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           K++T+ LR TRNP++NE   + GIT   ++  TL   V   D++  ++ IG T
Sbjct: 67  KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G +  SL +    +     +++A+ L  MD  GLADPYVK++LL    +  K +T   + 
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 547 TLNPVYNESFVF 558
           T NPV+NE+  +
Sbjct: 76  TRNPVWNETLQY 87

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG+IL+SL +        + +++  +L  MD  G +DP+VK++L     + AK KT +KK
Sbjct: 1   RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           +TLNP +NE F +++                      N+ IG   L G  + G  L HW 
Sbjct: 61  KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 119
Query: 606 DVCNSPRRQIAEW 618
           +   +  ++I  W
Sbjct: 120 ECLKNKDKKIERW 132

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG+IL+SL +        + +++  +L  MD  G +DP+VK++L     + AK KT +KK
Sbjct: 23  RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           +TLNP +NE F +++                      N+ IG   L G  + G  L HW 
Sbjct: 83  KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 141
Query: 606 DVCNSPRRQIAEW 618
           +   +  ++I  W
Sbjct: 142 ECLKNKDKKIERW 154

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG+IL+SL +        + +++  +L   D  G +DP+VK++L     + AK KT +KK
Sbjct: 23  RGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKK 82
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           +TLNP +NE F +++                      N+ IG   L G  + G  L HW 
Sbjct: 83  KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 141
Query: 606 DVCNSPRRQIAEW 618
           +   +  ++I  W
Sbjct: 142 ECLKNKDKKIERW 154

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
           K G+I+ K +  +++  L VTV   ++L   D P+G SDPYVK+ L+PD   + K KT+ 
Sbjct: 5   KRGRIYLKAEVADEK--LHVTVRDAKNLIPXD-PNGLSDPYVKLKLIPDPKNESKQKTKT 61
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
           +R T NP +NE FTF  + P   K   L   ++ +DR +R+D   +L F V
Sbjct: 62  IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFXGSLSFGV 110

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
           ++ RG I L    + A  +  + V  A+NL   D  GL+DPYVK+ L+   +  +K+KT 
Sbjct: 3   TEKRGRIYLKA--EVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
             + TLNP +NESF F++                  R T+N+  G L  G  +      +
Sbjct: 61  TIRSTLNPQWNESFTFKL-KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPAS 119
Query: 603 HWTDVCN 609
            W  + N
Sbjct: 120 GWYKLLN 126

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G+I F +KY+++   LVV V +C  L   D     S+PYVK +LLPDK    K KT + R
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
            T NP+Y+E   +  I    L   TL F V+   R+ R+
Sbjct: 70  DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRN 107

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           G I  SL ++       + V +   L   D     ++PYVK YLL    R  K+KT +K+
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGD 594
            T+NP+Y+E+  +E+P                 R  +N  +G  ++  D
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMD 118

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
           K G+I+ K +  +++  L VTV   ++L   D P+G SDPYVK+ L+PD   + K KT+ 
Sbjct: 3   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 59
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
           +R T NP +NE FTF  + P   K   L   ++ +DR +R+D   +L F V
Sbjct: 60  IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGV 108

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
           ++ RG I L    +    +  + V  A+NL  MD  GL+DPYVK+ L+   +  +K+KT 
Sbjct: 1   TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
             + TLNP +NESF F++                  R T+N+ +G L  G  +      +
Sbjct: 59  TIRSTLNPQWNESFTFKL-KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPAS 117
Query: 603 HWTDVCN 609
            W  + N
Sbjct: 118 GWYKLLN 124

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 481 IKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK 540
           + ++ RG + L +   P A+   + V +ARNL  MD  GL+DPYVK+ L+   + + K+K
Sbjct: 2   MHTERRGRLQLEI-RAPTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQK 60
Query: 541 THVKKRTLNPVYNESFVFEV 560
           T   K TLNPV+NE+FVF +
Sbjct: 61  TRTVKATLNPVWNETFVFNL 80

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
           K G+I+ K +  +++  L VTV   ++L   D P+G SDPYVK+ L+PD   + K KT+ 
Sbjct: 4   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 60
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
           +R T NP +NE FTF  + P   K   L   ++ +DR +R+D   +L F V
Sbjct: 61  IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGV 109

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
           ++ RG I L    +    +  + V  A+NL  MD  GL+DPYVK+ L+   +  +K+KT 
Sbjct: 2   TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 59
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
             + TLNP +NESF F++                  R T+N+ +G L  G  +      +
Sbjct: 60  TIRSTLNPQWNESFTFKLKP-SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPAS 118
Query: 603 HWTDVCN 609
            W  + N
Sbjct: 119 GWYKLLN 125

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G+I L++      N+  +VV   RNL      G +DPYV++YLL   +R  ++KTHV K+
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 547 TLNPVYNESFVFEV 560
           TLNPV+++SF F V
Sbjct: 70  TLNPVFDQSFDFSV 83

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGS------SDPYVKVHLLPDKQKVK 352
           +LG + F  +Y    N L V VI+ RDL    +  GS      S+PYVK+ LLPD++  K
Sbjct: 11  QLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSK 70
Query: 353 -TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395
            T V RKT+ P++ E +TF  I   + +  TL   V  FD++SR
Sbjct: 71  QTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSR 113

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 500 NRFTIVVLKARNLP--------KMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPV 551
           N  T+ V++AR+LP        + D+   ++PYVK+ LL   +    K+T VK++T  PV
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAH-SNPYVKICLLPDQKN--SKQTGVKRKTQKPV 82
Query: 552 YNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHW 604
           + E + FE+P                 + +++ VIG++ +   +       HW
Sbjct: 83  FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV--------- 351
           G+I  +I Y      L++ +++ R+L  +D  +G SDP+VKV+LLP + +V         
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDN-NGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 352 ---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
              +T+ ++K+ NP +N+   +  I+  QL   TL   V+ +DR+S +D
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND 112

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY-KGQRVA-------- 537
           GEI L + +        I +L+ARNL   D  G +DP+VKVYLL  +GQ +         
Sbjct: 7   GEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 538 KKKTHVKKRTLNPVYNESFVFE 559
           K++T   +++LNP +N++ +++
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYK 86

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 306 KIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLRKTRNP 362
           K+    +   L + V+  +DL  +D      +PYVK +LLPD  K    KT++ RKTRNP
Sbjct: 12  KLSVSYRNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69
Query: 363 IYNEEFTFTGITPHQLKGSTLHFVVFS 389
            +NE   ++G +   L+   L   V S
Sbjct: 70  TFNEMLVYSGYSKETLRQRELQLSVLS 96

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK 544
           G G + LS+ ++       I+V+  ++L   D     +PYVK YLL    + +K+KT + 
Sbjct: 7   GSGAVKLSVSYRNGT--LFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 545 KRTLNPVYNESFVF 558
           ++T NP +NE  V+
Sbjct: 64  RKTRNPTFNEMLVY 77

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---K 348
           C  +   + G+I+  I+      VL+V V   ++L   D P+G SDPYVK+ L+PD   +
Sbjct: 152 CGTDHTERRGRIY--IQAHIDREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSE 208
Query: 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGST----LHFVVFSFDRYSRDDIGSTLHF 404
            K KT+ ++ + NP +NE F F      QLK S     L   ++ +D  SR+D   +L F
Sbjct: 209 SKQKTKTIKSSLNPEWNETFRF------QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 262
Query: 405 VVFSFDRYSRD 415
            +    +   D
Sbjct: 263 GISELQKAGVD 273

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAX 563
           +VV  A+NL  MD  GL+DPYVK+ L+   +  +K+KT   K +LNP +NE+F F++   
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 564 XXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHW 604
                            ++N+ +G L  G  +     +  W
Sbjct: 236 DKDRRLSVEIWDWDL-TSRNDFMGSLSFGISELQKAGVDGW 275

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
           G+I+  I+      VL+V V   ++L   D P+G SDPYVK+ L+PD   + K KT+ ++
Sbjct: 20  GRIY--IQAHIDREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 358 KTRNPIYNEEFTFTGITPHQLKGST----LHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS 413
            + NP +NE F F      QLK S     L   ++ +D  SR+D   +L F +    +  
Sbjct: 77  CSLNPEWNETFRF------QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
Query: 414 RD 415
            D
Sbjct: 131 VD 132

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
           +VV  A+NL  MD  GL+DPYVK+ L+   +  +K+KT   K +LNP +NE+F F++
Sbjct: 35  VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 294 GNAEGKLGQIFFKIKYQEKEN-VLVVTVIKCRDLFIKDTPSGSSDPYVKVHL-LPDKQK- 350
           G A G LG+  + +   E E+ +L V V+   DL  KD   G+SDPYVK+ L + D+ + 
Sbjct: 1   GMATG-LGEPVYGLSEDEGESRILRVKVVSGIDLAKKDI-FGASDPYVKLSLYVADENRE 58
Query: 351 ---VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
              V+T+ ++KT NP +NEEF F  + P   +   L F VF  +R +RDD 
Sbjct: 59  LALVQTKTIKKTLNPKWNEEFYFR-VNPSNHR---LLFEVFDENRLTRDDF 105

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 483 SQGRGEILLSLCWQPAANRFTIV-VLKARNLPKMDVTGLADPYVKV--YLLYKGQRVAKK 539
           + G GE +  L      +R   V V+   +L K D+ G +DPYVK+  Y+  + + +A  
Sbjct: 3   ATGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALV 62
Query: 540 KTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDL 591
           +T   K+TLNP +NE F F V                  R+T+++ +G++D+
Sbjct: 63  QTKTIKKTLNPKWNEEFYFRV---NPSNHRLLFEVFDENRLTRDDFLGQVDV 111

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 500 NRFTIVVLKARNLP-KMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 558
            +  + V++AR+L  K        PYVKVYLL  G  +AKKKT + ++TL+P+Y +S VF
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 559 E 559
           +
Sbjct: 90  D 90

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLR 357
           ++F  ++ +E   ++ V VI    L  KD   G+SDPYV+V L          V+T+ ++
Sbjct: 8   EVFGLLEDEENSRIVRVRVIAGIGLAKKDI-LGASDPYVRVTLYDPMNGVLTSVQTKTIK 66
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           K+ NP +NEE  F  + P Q +   L F VF  +R +RDD 
Sbjct: 67  KSLNPKWNEEILFR-VHPQQHR---LLFEVFDENRLTRDDF 103

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
           GQ+  K+ + +  + L+VT++  +DL  ++      +PYVK++ LPD   K K +T+ ++
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSRED-GRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
           KT  P +N+ F ++ +   + +   L   ++   R   ++
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEE 103

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++ + L +    ++  + +L A++LP  +     +PYVK+Y L       K++T   K+
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 547 TLNPVYNESFVF 558
           TL P +N++F++
Sbjct: 65  TLEPKWNQTFIY 76

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT 547
           ++ + L +    ++  + +L A++LP  +     +PYVK+Y L       K++T   K+T
Sbjct: 9   QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 548 LNPVYNESFVF 558
           L P +N++F++
Sbjct: 69  LEPKWNQTFIY 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	622
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-101
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-100
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-27
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-65
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	8e-33
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-64
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-33
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-64
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	9e-33
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	8e-62
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	8e-32
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	7e-44
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-32
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-43
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-32
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-43
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	7e-38
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-41
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	7e-40
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-41
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-37
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	6e-41
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-37
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-41
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-37
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-40
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-35
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-40
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-37
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-40
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-38
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-40
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-37
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	5e-38
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	8e-33
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-37
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-34
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	9e-37
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-35
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-36
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-35
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-36
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-34
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-35
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-35
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-35
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-30
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-34
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-28
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-34
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	7e-30
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-27
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-22
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	5e-27
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	8e-24
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	7e-26
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-23
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	8e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-20
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-22
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-21
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-22
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-22
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	9e-21
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-19
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-15
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	9e-19
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	7e-16
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-16
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	1e-13
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-12
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-09
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-09
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-08
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-08
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	6e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-05
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	8e-07
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  308 bits (790), Expect = e-101
 Identities = 107/324 (33%), Positives = 167/324 (51%), Gaps = 56/324 (17%)

Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTR 354
           A    G+I F ++Y    + LVV +++  DL  KD  +G SDPYVK++LLPD+ +K +T+
Sbjct: 2   AGAPCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTK 60

Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
           V RKT NPI+NE F F  +   +L    LHF V+ FDR+SR D+                
Sbjct: 61  VHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDL---------------- 103

Query: 415 DDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDI 474
              +G+V             L  ++   ++                           RDI
Sbjct: 104 ---IGQV------------VLDNLLELAEQ--------------------PPDRPLWRDI 128

Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ 534
                  +    GE+  SLC+ P A   T+ ++KA NL  MD+TG +DPYVK  L+ +G+
Sbjct: 129 LEGGS--EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGR 186

Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
           R+ K+KT +KK TLNP YNE+ VF+V  +++++V L + ++D+D +  NEVIG   +G +
Sbjct: 187 RLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 246

Query: 595 KSSGTALTHWTDVCNSPRRQIAEW 618
            +      HW ++  +PR+ +  W
Sbjct: 247 AADPHGREHWAEMLANPRKPVEHW 270

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  306 bits (785), Expect = e-100
 Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 58/324 (17%)

Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTR 354
              KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK +K +T+
Sbjct: 1   GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETK 59

Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
           V RKT NP++NE+FTF  +   +L G TL   V+ FDR+S+ DI                
Sbjct: 60  VHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDI---------------- 102

Query: 415 DDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDI 474
                                               +GE    + +   +GH     RD+
Sbjct: 103 ------------------------------------IGEFKVPM-NTVDFGHVTEEWRDL 125

Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ 534
           Q    + + +  G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+
Sbjct: 126 QSAE-KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK 184

Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
           R+ KKKT +KK TLNP YNESF FEVP + +  V + + +LD+D++ KN+ IG++ +G +
Sbjct: 185 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244

Query: 595 KSSGTALTHWTDVCNSPRRQIAEW 618
            S+G  L HW+D+  +PRR IA+W
Sbjct: 245 -STGAELRHWSDMLANPRRPIAQW 267

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  110 bits (277), Expect = 3e-27
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV 351
            +   + KLG I F ++Y      L V +++ ++L   D   G SDPYVK+HL+ + +++
Sbjct: 128 AEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRL 186

Query: 352 ---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IG 399
              KT + + T NP YNE F+F  +   Q++   +   V  +D+  ++D IG
Sbjct: 187 KKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  209 bits (534), Expect = 4e-65
 Identities = 76/136 (55%), Positives = 105/136 (77%), Gaps = 1/136 (0%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
             GRGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++KKKTH
Sbjct: 13  PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTH 72

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALT 602
           VKK T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG   + G+   
Sbjct: 73  VKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT-AEGSGGG 131

Query: 603 HWTDVCNSPRRQIAEW 618
           HW ++C+ PRRQIA+W
Sbjct: 132 HWKEICDFPRRQIAKW 147

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  122 bits (308), Expect = 8e-33
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRV 355
             G++   + YQ   N L V V+K R L   D  SG SDPYVKV+L   K+++   KT V
Sbjct: 15  GRGELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHV 73

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
            + T N ++NE F F  I    L+  ++ F+V   +R SR++ IG  +
Sbjct: 74  KKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLV 120

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  207 bits (529), Expect = 4e-64
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 465 GHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPY 524
              ++   + Q   +    + RG+IL+SL +        + +++  +L  MD  G +DP+
Sbjct: 3   ARGMALYEEEQVERIG-DIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPF 61

Query: 525 VKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 584
           VK++L     + AK KT +KK+TLNP +NE F +++   +L   SL++ + D+D    N+
Sbjct: 62  VKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSND 121

Query: 585 VIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLT 620
            IG   LG   + G  L HW +   +  ++I  W  
Sbjct: 122 YIGGCQLGIS-AKGERLKHWYECLKNKDKKIERWHQ 156

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  123 bits (311), Expect = 4e-33
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 278 SDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSD 337
           S    AL  +E V+  G+ E + G+I   + Y  ++  L+V +I+C  L   D  +G SD
Sbjct: 2   SARGMALYEEEQVERIGDIE-ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMD-ANGYSD 59

Query: 338 PYVKVHLLPDKQKV---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394
           P+VK+ L PD  K    KT++ +KT NP +NEEF +  I    L   +L   V+ +D   
Sbjct: 60  PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGK 118

Query: 395 RDD-IGSTL 402
            +D IG   
Sbjct: 119 SNDYIGGCQ 127

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  206 bits (525), Expect = 7e-64
 Identities = 62/135 (45%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+LLSLC+ P+AN   + ++KARNL  MD+ G +DPYVKV+L+YK +RV KKKT  KK
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           R LNP++NESF F++P + L   ++ + ++D D++++N+VIG++ L    S    + HW 
Sbjct: 62  RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK-SGPGEVKHWK 120

Query: 606 DVCNSPRRQIAEWLT 620
           D+   PR+ +A+W  
Sbjct: 121 DMIARPRQPVAQWHQ 135

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  122 bits (307), Expect = 9e-33
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVL 356
            G++   + Y    N ++V +IK R+L   D   G+SDPYVKV L+   ++V   KT   
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMD-IGGTSDPYVKVWLMYKDKRVEKKKTVTK 60

Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           ++  NPI+NE F F  I   +L+ +T+   V   D+ SR+D IG   
Sbjct: 61  KRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIY 106

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  201 bits (512), Expect = 8e-62
 Identities = 67/139 (48%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
             +  G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT
Sbjct: 7   ILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKT 66

Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL 601
            +KK TLNP YNESF FEVP + +  V + + +LD+D++ KN+ IG++ +G + S+G  L
Sbjct: 67  TIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAEL 125

Query: 602 THWTDVCNSPRRQIAEWLT 620
            HW+D+  +PRR IA+W T
Sbjct: 126 RHWSDMLANPRRPIAQWHT 144

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  119 bits (301), Expect = 8e-32
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-- 351
           G  E KLG I F ++Y      L V +++ ++L   D   G SDPYVK+HL+ + +++  
Sbjct: 6   GILE-KLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKK 63

Query: 352 -KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGS 400
            KT + + T NP YNE F+F  +   Q++   +   V  +D+  ++D IG 
Sbjct: 64  KKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  151 bits (384), Expect = 2e-43
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
            + RG I +            +VV  A+NL  MD  GL+DPYVK+ L+   +  +K+KT 
Sbjct: 16  MERRGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALT 602
             K +LNP +NE+F F++   + D   L + + DWD  ++N+ +G L  G  +     + 
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132

Query: 603 HW 604
            W
Sbjct: 133 GW 134

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  121 bits (306), Expect = 1e-32
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRV 355
           + G+I+ +        VL+V V   ++L   D P+G SDPYVK+ L+PD     K KT+ 
Sbjct: 18  RRGRIYIQAHIDR--EVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKT 74

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSR 414
           ++ + NP +NE F F        K   L   ++ +D  SR+D +GS    + F      +
Sbjct: 75  IKCSLNPEWNETFRFQ--LKESDKDRRLSVEIWDWDLTSRNDFMGS----LSFGISELQK 128

Query: 415 DDIVGEVFYSLQSFE 429
             +  + ++ L S E
Sbjct: 129 AGV--DGWFKLLSQE 141

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  150 bits (382), Expect = 3e-43
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
               G++ + L +    ++  + +L A++LP  +     +PYVK+Y L       K++T 
Sbjct: 4   GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 63

Query: 543 VKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSSGT 599
             K+TL P +N++F++  V         LE+ L D  RV   ++E +G + +  + +   
Sbjct: 64  TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 123

Query: 600 ALTHWTDVCNSPRR 613
              HW  +      
Sbjct: 124 DEPHWYKLQTHDSG 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  136 bits (344), Expect = 7e-38
 Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---K 350
           G++    GQ+  K+ + +  + L+VT++  +DL  ++      +PYVK++ LPD+    K
Sbjct: 1   GSSGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNK 59

Query: 351 VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTLHFVVF 407
            +T+ ++KT  P +N+ F ++ +   + +   L   ++   R   ++   +G     ++ 
Sbjct: 60  RRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE----ILI 115

Query: 408 SFDRYSRDDIVGEVFYSLQS 427
             +    DD     +Y LQ+
Sbjct: 116 ELETALLDDE--PHWYKLQT 133

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  146 bits (371), Expect = 1e-41
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVK 544
            G I  SL ++       + V +   L   D     ++PYVK YLL    R  K+KT +K
Sbjct: 9   TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68

Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTH 603
           + T+NP+Y+E+  +E+P   L   +L+  +    R  +N  +G  ++          L H
Sbjct: 69  RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128

Query: 604 WTDV---CNSPRRQIAEW 618
              +    ++        
Sbjct: 129 CLPLHGKISAESEGHHHH 146

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  141 bits (358), Expect = 7e-40
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---K 350
           GN     G+I F +KY+++   LVV V +C  L   D     S+PYVK +LLPDK    K
Sbjct: 4   GNIF-VTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK 62

Query: 351 VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
            KT + R T NP+Y+E   +  I    L   TL F V+   R+ R+  +G   
Sbjct: 63  RKTSIKRDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAE 114

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  145 bits (367), Expect = 2e-41
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
            G++ + L +    ++  + +L A++LP  +     +PYVK+Y L       K++T   K
Sbjct: 4   SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63

Query: 546 RTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSSGTALT 602
           +TL P +N++F++  V         LE+ L D  RV   ++E +G + +  + +      
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 123

Query: 603 HW 604
           HW
Sbjct: 124 HW 125

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  134 bits (340), Expect = 1e-37
 Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           GQ+  K+ + +  + L+VT++  +DL  ++      +PYVK++ LPD+    K +T+ ++
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTLHFVVFSFDRYSR 414
           KT  P +N+ F ++ +   + +   L   ++   R   ++   +G     ++   +    
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE----ILIELETALL 119

Query: 415 DDIVGEVFYSLQ 426
           DD     +Y LQ
Sbjct: 120 DDE--PHWYKLQ 129

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  144 bits (365), Expect = 6e-41
 Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLR 357
            LG +FF ++Y  +    VV + + R L   D  S +SDPY+K+ +LP+K  KVKTRVLR
Sbjct: 7   GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 66

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           KT +P ++E FTF GI   Q++   LHF + SFDR+SRDD IG  L
Sbjct: 67  KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  135 bits (342), Expect = 1e-37
 Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKT 541
           S G G +  SL +      F + + +AR LP MD   + +DPY+K+ +L + +   K KT
Sbjct: 5   SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62

Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
            V ++TL+P ++E+F F  +P   +  ++L   +L +DR +++++IG   + L G + S 
Sbjct: 63  RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

Query: 599 TALTHWTDVCNSPR 612
             +    ++ + P 
Sbjct: 123 GKMLMNREIISGPS 136

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  144 bits (366), Expect = 6e-41
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 3/126 (2%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
            G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T V +
Sbjct: 20  LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 77

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHW 604
           +TLNPV+NE F F+VP   L   +L + + D+DR +K+++IG   +       G     W
Sbjct: 78  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 137

Query: 605 TDVCNS 610
            D+ ++
Sbjct: 138 RDLQSA 143

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  135 bits (342), Expect = 1e-37
 Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 5/122 (4%)

Query: 283 ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV 342
            +        D   E KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV
Sbjct: 4   GIGGGGGGILDSMVE-KLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKV 61

Query: 343 HLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGS 400
            LLPDK +K +T+V RKT NP++NE+FTF  +   +L G TL   V+ FDR+S+ D IG 
Sbjct: 62  FLLPDKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120

Query: 401 TL 402
             
Sbjct: 121 FK 122

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  142 bits (361), Expect = 3e-40
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
               G+I L++      N+  +VV   RNL      G +DPYV++YLL   +R  ++KTH
Sbjct: 7   GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTH 65

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE--VIGRLDLG-GDKSSGT 599
           V K+TLNPV+++SF F V    +   +L++ + +       +  ++G++ +    +    
Sbjct: 66  VSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK 125

Query: 600 ALTHWTDVCNSP 611
             T W D+    
Sbjct: 126 GWTQWYDLTEDS 137

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  130 bits (328), Expect = 1e-35
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 9/116 (7%)

Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--- 349
            G++   LGQI   I++  + N L+V V  CR+L         SDPYV+++LLPDK+   
Sbjct: 3   SGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFS--EDGSDPYVRMYLLPDKRRSG 60

Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTL 402
           + KT V +KT NP++++ F F+ ++  +++  TL   V +   +   D   +G  L
Sbjct: 61  RRKTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVL 115

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  142 bits (361), Expect = 3e-40
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 291 DCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-Q 349
                +   LG+I F + Y  +E+ L V ++K ++L  KD  SG+SDP+VK++LLPDK  
Sbjct: 3   SGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKD-FSGTSDPFVKIYLLPDKKH 61

Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           K++T+V RK  NP +NE F F G    ++    L+  V  +DR+SR+D IG   
Sbjct: 62  KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVS 115

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  133 bits (336), Expect = 8e-37
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHV 543
           +  G I  S+ +    +  T+ ++KA+ LP  D +G +DP+VK+YLL    +  K +T V
Sbjct: 10  ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDKKHKLETKV 67

Query: 544 KKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
           K++ LNP +NE+F+FE  P + +    L L +LD+DR ++N+ IG + +           
Sbjct: 68  KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQ 127

Query: 602 THWTD 606
           T W D
Sbjct: 128 TFWKD 132

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  142 bits (361), Expect = 3e-40
 Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 3/130 (2%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
           + +  G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T
Sbjct: 24  EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFET 81

Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTA 600
            V ++TLNPV+NE F F+VP   L   +L + + D+DR +K+++IG   +       G  
Sbjct: 82  KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 141

Query: 601 LTHWTDVCNS 610
              W D+ ++
Sbjct: 142 TEEWRDLQSA 151

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  137 bits (346), Expect = 4e-38
 Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 4/127 (3%)

Query: 278 SDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSD 337
           S     +++      +   E KLG++ + + Y  + N L+V +I+  +L   D   G+SD
Sbjct: 6   SGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSD 64

Query: 338 PYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
           PYVKV LLPDK +K +T+V RKT NP++NE+FTF  +   +L G TL   V+ FDR+S+ 
Sbjct: 65  PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKH 123

Query: 397 D-IGSTL 402
           D IG   
Sbjct: 124 DIIGEFK 130

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  142 bits (360), Expect = 4e-40
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 288 ETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD 347
           E    D +    LG + F + Y +  + L  T+I+ + L   D  +G +DPYVK+HLLP 
Sbjct: 3   EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMD-SNGLADPYVKLHLLPG 61

Query: 348 ---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
                K++T+ LR TRNP++NE   + GIT   ++  TL   V   D++  ++ IG T 
Sbjct: 62  ASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  135 bits (343), Expect = 1e-37
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
           ++   G +  SL +    +     +++A+ L  MD  GLADPYVK++LL    +  K +T
Sbjct: 11  QATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT 70

Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTA 600
              + T NPV+NE+  +  +  +++   +L + + D D+   NE IG       K     
Sbjct: 71  KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130

Query: 601 LTHWT 605
             ++ 
Sbjct: 131 RKNFN 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  136 bits (345), Expect = 5e-38
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
            + +G   L L          + +++ + L      G  DPYVK+ L+ +  R+  +KT 
Sbjct: 10  HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQ 68

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK-NEVIGRLDLGGDKSSGTAL 601
                 +P ++E F F V  ++     L + + +    ++ + +IG +  G        +
Sbjct: 69  TVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFG--------V 119

Query: 602 THWTDVCNSPRRQIAEW 618
                    P ++I+ W
Sbjct: 120 KSLLT----PDKEISGW 132

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  122 bits (308), Expect = 8e-33
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 14/148 (9%)

Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-- 351
            ++    G    ++    ++ VL++ +I+ + L  K    G+ DPYVK+ L+P+  ++  
Sbjct: 7   HHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLRH 64

Query: 352 -KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD--IGSTLHFVVFS 408
            KT+ +   R+P ++E F F      +     L   V++    SR    IG     + F 
Sbjct: 65  QKTQTVPDCRDPAFHEHFFFPV--QEEDDQKRLLVTVWNRASQSRQSGLIGC----MSFG 118

Query: 409 FDRYSRDDIVGEVFYSLQSFETYGSTLH 436
                  D     +Y L   E  G T H
Sbjct: 119 VKSLLTPDKEISGWYYLLG-EHLGRTKH 145

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  135 bits (342), Expect = 1e-37
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKK 540
           ++ G   I ++L +     +F I++++  NL  +         ++V +L          +
Sbjct: 25  EAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFR 84

Query: 541 THVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
           T     +   V+NE F   +    L   +L + +   DR    E +G  ++ L     SG
Sbjct: 85  TRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144

Query: 599 TALTHWTDVCN 609
              T W ++ +
Sbjct: 145 ERSTRWYNLLS 155

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  127 bits (321), Expect = 2e-34
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 15/160 (9%)

Query: 277 DSDDSC----ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTP 332
            S  S             D D +      +I   +KY EK     + +I+  +L      
Sbjct: 2   SSGSSGVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALL-Q 60

Query: 333 SGSSDPYVKVHLLPDKQKV----KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388
                  ++V +LP  +      +TR L  +   ++NE F    ++   L   TL   V 
Sbjct: 61  QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVC 119

Query: 389 SFDRYSRDD-IGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
           + DR   ++ +G        S     R       +Y+L S
Sbjct: 120 TTDRSHLEECLGG----AQISLAEVCRSGERSTRWYNLLS 155

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  133 bits (336), Expect = 9e-37
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 291 DCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDT------PSGSSDPYVKVHL 344
                ++ +LG + F  +Y    N L V VI+ RDL    +          S+PYVK+ L
Sbjct: 3   SGSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL 62

Query: 345 LPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           LPD++   +T V RKT+ P++ E +TF  I   + +  TL   V  FD++SR   IG   
Sbjct: 63  LPDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  127 bits (322), Expect = 7e-35
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKM-------DVTGLADPYVKVYLLYKGQ 534
                G +  S  +    N  T+ V++AR+LP              ++PYVK+ LL   +
Sbjct: 8   SKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK 67

Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
               K+T VK++T  PV+ E + FE+P       +L L ++D+D+ +++ VIG++ +   
Sbjct: 68  N--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLC 125

Query: 595 KSSGTALTHW 604
           +       HW
Sbjct: 126 EVDLVKGGHW 135

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  131 bits (332), Expect = 2e-36
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRV 355
             G +   + Y+     L + V+  +DL  +D      +PYVK +LLPD     K KT++
Sbjct: 7   GSGAVKLSVSYRN--GTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKI 62

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
            RKTRNP +NE   ++G +   L+   L   V S +    +  +G   
Sbjct: 63  SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGIT 110

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  128 bits (325), Expect = 2e-35
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
              G G + LS+ ++       I+V+  ++L   D     +PYVK YLL    + +K+KT
Sbjct: 4   HHHGSGAVKLSVSYRN--GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKT 60

Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGT 599
            + ++T NP +NE  V+     + L    L+L +L  + + +N  +G + L   D +   
Sbjct: 61  KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120

Query: 600 ALTHWTD 606
               W  
Sbjct: 121 ETVKWYQ 127

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  130 bits (330), Expect = 5e-36
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL---------YKGQRV 536
            GEI L + +        I +L+ARNL   D  G +DP+VKVYLL               
Sbjct: 6   TGEIQLQINYDL--GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 537 AKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GD 594
            K++T   +++LNP +N++ +++ +  + L   +LE+ + D+DR + N+ +G + +    
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

Query: 595 KSSGTALTHW 604
            S       W
Sbjct: 124 TSHLDNTPRW 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  126 bits (318), Expect = 3e-34
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 16/115 (13%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----------- 349
           G+I  +I Y      L++ +++ R+L  +D  +G SDP+VKV+LLP +            
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 350 -KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
            K +T+ ++K+ NP +N+   +  I+  QL   TL   V+ +DR+S +D +G  L
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  130 bits (328), Expect = 1e-35
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
                ++   L +        +  L+A      +  G  D YV+  +  +   V + +T 
Sbjct: 9   WNQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSV-EAQTA 64

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
           +KKR L+  + E  V  +  + L + +L L L   DR +++ V G L LG    S     
Sbjct: 65  LKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGA 124

Query: 602 THWTDVCNSP 611
             W ++  S 
Sbjct: 125 AQWGELKTSG 134

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  127 bits (322), Expect = 6e-35
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--KQKVKTR 354
             +  ++ + + Y  ++  L VT ++           G  D YV+  +       + +T 
Sbjct: 9   WNQAPKLHYCLDYDCQKAELFVTRLEAVTS----NHDGGCDCYVQGSVANRTGSVEAQTA 64

Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
           + ++  +  + E      +   +L  +TL   + + DR+SR    G   
Sbjct: 65  LKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELR 112

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  129 bits (327), Expect = 4e-35
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 473 DIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLY 531
            +  R   + +   G+I + +  +    +  + V++AR+L +   +     PYVKVYLL 
Sbjct: 6   QLVGRQ-TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLE 62

Query: 532 KGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL-LDWDRVTKNEVIGRLD 590
            G  +AKKKT + ++TL+P+Y +S VF+          L++++  D+ R+     +G   
Sbjct: 63  NGACIAKKKTRIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQ 119

Query: 591 LG-GDKSSGTALTHW 604
           +   +    + +  W
Sbjct: 120 ILLEELDLSSMVIGW 134

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  117 bits (294), Expect = 1e-30
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---K 352
           A   +G I   ++ ++    L V VI+ R L  K     +  PYVKV+LL +   +   K
Sbjct: 14  ATPAMGDIQIGMEDKK--GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71

Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHF-VVFSFDRYSRDD-IGSTL 402
           TR+ RKT +P+Y +   F        +G  L   V   + R      +G   
Sbjct: 72  TRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQ 119

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  126 bits (319), Expect = 4e-34
 Identities = 43/210 (20%), Positives = 68/210 (32%), Gaps = 58/210 (27%)

Query: 309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD----KQKVKTRVLRKTRNPIY 364
           + +   V+ V VI    L  KD   G+SDPYV+V L          V+T+ ++K+ NP +
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKD-ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61

Query: 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424
           NEE  F  +                            + F VF  +R +RDD +G+V   
Sbjct: 62  NEEILFRVLPQRH-----------------------RILFEVFDENRLTRDDFLGQVDVP 98

Query: 425 LQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQ 484
           L                                L +           +D        KS+
Sbjct: 99  LY------------------------------PLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPK 514
            +G + L + + P          +A  L  
Sbjct: 129 VKGYLRLKMTYLPKNGSEDENADQAEELEP 158

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  109 bits (275), Expect = 4e-28
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYN 553
                    + V+    L K D+ G +DPYV+V L       +   +T   K++LNP +N
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 554 ESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           E  +F V         +   + D +R+T+++ +G++D+
Sbjct: 63  EEILFRVLPQRH---RILFEVFDENRLTRDDFLGQVDV 97

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  126 bits (317), Expect = 5e-34
 Identities = 43/205 (20%), Positives = 66/205 (32%), Gaps = 59/205 (28%)

Query: 298 GKLGQIFFKIKY-QEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVK 352
                  F +   +E   ++ V VI    L  KD   G+SDPYV+V L          V+
Sbjct: 3   ATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKD-ILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412
           T+ ++K+ NP +NEE  F                               L F VF  +R 
Sbjct: 62  TKTIKKSLNPKWNEEILFRV-----------------------HPQQHRLLFEVFDENRL 98

Query: 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCR 472
           +RDD +G+V   L                                L +           +
Sbjct: 99  TRDDFLGQVDVPLY------------------------------PLPTENPRLERPYTFK 128

Query: 473 DIQPRNLRIKSQGRGEILLSLCWQP 497
           D        KS+ +G + L + + P
Sbjct: 129 DFVLHPRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  114 bits (286), Expect = 7e-30
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 487 GEILLSLCWQPAANRF-TIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVK 544
              +  L      +R   + V+    L K D+ G +DPYV+V L       +   +T   
Sbjct: 6   AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65

Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           K++LNP +NE  +F V         L   + D +R+T+++ +G++D+
Sbjct: 66  KKSLNPKWNEEILFRVHPQQH---RLLFEVFDENRLTRDDFLGQVDV 109

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  106 bits (267), Expect = 2e-27
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 556
               +  + VL A+NL K D   L DP+ K+ +   GQ      T   K TL+P +N+ +
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHY 58

Query: 557 VFEVPADNLDSVSLELLLLDWDRVTKNEVIGRL 589
              V      + S+ + + +  ++ K +  G L
Sbjct: 59  DLYVG----KTDSITISVWNHKKIHKKQGAGFL 87

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           + +TV+  ++L  KD      DP+ K+ +    Q   T  ++ T +P +N+ +    +  
Sbjct: 7   IRLTVLCAKNLAKKD-FFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY-VGK 64

Query: 376 HQLKGSTLHFVVFSFDRYSRDD 397
                 ++   V++  +  +  
Sbjct: 65  TD----SITISVWNHKKIHKKQ 82

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  105 bits (264), Expect = 5e-27
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            ++V  A N+PK    G  DP V V       +  KKKT      LNPV+NE   F++  
Sbjct: 10  RVIVESASNIPKTK-FGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRG 63

Query: 563 DNLD-SVSLELLLLDWDRVTKNEVIGRLDLG 592
             LD S SL +++ D++ + +N++IG   + 
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVA 94

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 96.3 bits (240), Expect = 8e-24
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           +L V V    ++       G  DP V V    +K+K  T+ +    NP++NE   F    
Sbjct: 8   MLRVIVESASNIPKTKF--GKPDPIVSVIFKDEKKK--TKKVDNELNPVWNEILEFDLRG 63

Query: 375 PHQLKGSTLHFVVFSFDRYSRDD-IGST 401
                 S+L  +V  F+   ++  IG+ 
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTA 91

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  101 bits (255), Expect = 7e-26
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            + VLKA +L   D +G +DP+  + L   G    + +TH   + LNP +N+ F F +  
Sbjct: 16  QVKVLKAADLLAADFSGKSDPFCLLEL---GND--RLQTHTVYKNLNPEWNKVFTFPIK- 69

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            ++  V LE+ + D D     + +G++ +
Sbjct: 70  -DIHDV-LEVTVFDEDGDKPPDFLGKVAI 96

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 95.0 bits (237), Expect = 3e-23
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 26/113 (23%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           +L V V+K  DL   D  SG SDP+  + L     +++T  + K  NP +N+ FTF    
Sbjct: 14  ILQVKVLKAADLLAAD-FSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTF---- 66

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                                 DI   L   VF  D     D +G+V   L S
Sbjct: 67  -------------------PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 96.3 bits (240), Expect = 8e-24
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 499 ANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 555
           +++FT+VVL+A  + K    D+    DPYV++++       ++K+T      +NPV+NE+
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNET 59

Query: 556 FVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           F F +         LE+ L+D + V  +E +G    
Sbjct: 60  FEFILD--PNQENVLEITLMDANYV-MDETLGTATF 92

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 314 NVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTF 370
           +   V V++   +          + DPYV++ +      + +TR      NP++NE F F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTL 402
                   + + L   +   +    + +G+  
Sbjct: 63  ---ILDPNQENVLEITLMDANYVMDETLGTAT 91

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
           +I V+ A+ L   D TG +DPYV V +        KK+T      LNPV+ E+F FE   
Sbjct: 20  SITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECH- 73

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
               S  +++ +LD D   K+ V  R     D
Sbjct: 74  --NSSDRIKVRVLDEDDDIKSRVKQRFKRESD 103

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
            + +TV+  + L  KD  +GSSDPYV V +   K K +T+ +    NP++ E F F    
Sbjct: 18  KISITVVCAQGLQAKD-KTGSSDPYVTVQV--GKTKKRTKTIYGNLNPVWEENFHFECHN 74

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
                   +   V   D   +          V    +   DD +G+    +++ 
Sbjct: 75  SSD----RIKVRVLDEDDDIKS--------RVKQRFKRESDDFLGQTIIEVRTL 116

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            +V++ A+ L   D     DPYV++      Q   +K    +     P +NE+F+F V  
Sbjct: 13  EVVLVSAKGLEDADFLNNMDPYVQLTCR--TQD--QKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR--LDLGGDKSSGTALTHWTDV 607
              +   L+  + D D  T+++ +G   + L      G+      +V
Sbjct: 69  GTTE---LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV 112

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 91.6 bits (228), Expect = 4e-22
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 63/186 (33%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
            L V ++  + L   D    + DPYV++      QK           P +NE F FT   
Sbjct: 11  TLEVVLVSAKGLEDADF-LNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTV-- 66

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGST 434
                                 +  + L   +F  D  + DD VGE    L+     GS 
Sbjct: 67  ---------------------SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105

Query: 435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
                                                      N+    + +GEI ++L 
Sbjct: 106 --------------------------------------PPTAYNVVKDEEYKGEIWVALS 127

Query: 495 WQPAAN 500
           ++P+  
Sbjct: 128 FKPSGP 133

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 91.5 bits (227), Expect = 1e-21
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 31/148 (20%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L +TVI  +    K        PYV+V +  D Q  KT     T +P + +  T   +TP
Sbjct: 38  LQITVISAKLKENKKN-WFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVI-VTP 93

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGST 434
                                   S LHF V+S      D ++G     +    ++    
Sbjct: 94  V-----------------------SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 130

Query: 435 LHFVVFSFD---RYSRDDIVGEVFYSLQ 459
           L  VV +          + +G++   L 
Sbjct: 131 LEEVVVTLQLGGDKEPTETIGDLSICLD 158

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 88.8 bits (220), Expect = 9e-21
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            I V+ A+            PYV+V +   GQ    KKT     T +P + +     V  
Sbjct: 39  QITVISAKLKENKKNWFGPSPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVT- 92

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
                  L   +     +  + ++G   L
Sbjct: 93  ---PVSKLHFRVWSHQTLKSDVLLGTAAL 118

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 83.1 bits (205), Expect = 6e-19
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 23/119 (19%)

Query: 503 TIVVLKARNLPKMDV----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
            + + +A  L                 L DPY+ V +     RV +  T  K++T  P Y
Sbjct: 32  RVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQ--TSTKQKTNKPTY 87

Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRL-----DLGGDKSSGTALTHWTD 606
           NE F   V     D   LEL +     +  +  +        +L     +      W D
Sbjct: 88  NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 315 VLVVTVIKCRDLFIKDT---------PSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYN 365
            L V + +   L                   DPY+ V +    +  +T   +KT  P YN
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-DQVRVGQTSTKQKTNKPTYN 88

Query: 366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFD---RYSRDDIVGEVF 422
           EEF       +   G  L   VF       D     +      F    R +      E +
Sbjct: 89  EEFCA-----NVTDGGHLELAVFHETPLGYDHF---VANCTLQFQELLRTTGASDTFEGW 140

Query: 423 YSLQ 426
             L+
Sbjct: 141 VDLE 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 82.2 bits (203), Expect = 9e-19
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 504 IVVLKARNLPKMDV-----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
           I + +A +L                T L DPY+ + +     R+   +T  K++T +P +
Sbjct: 10  IKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRI--GQTATKQKTNSPAW 65

Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           ++ FV +V     +   +EL +     +  ++ +    +
Sbjct: 66  HDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTI 100

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 73.7 bits (181), Expect = 7e-16
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 315 VLVVTVIKCRDLFIKD----------TPSGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPI 363
           +L + + +   L                +   DPY+ +++  D  ++ +T   +KT +P 
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64

Query: 364 YNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           +++EF           G  +   VF       DD + + 
Sbjct: 65  WHDEFVT-----DVCNGRKIELAVFHDAPIGYDDFVANC 98

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 85.0 bits (209), Expect = 3e-17
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 496 QPAANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
              +++FT+VVL+A  + K    D+    DPYV++++       ++K+T      +NPV+
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVW 71

Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           NE+F F +  +      LE+ L+D + V  +E +G    
Sbjct: 72  NETFEFILDPN--QENVLEITLMDANYV-MDETLGTATF 107

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 80.8 bits (198), Expect = 5e-16
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 310 QEKENVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNE 366
            +  +   V V++   +          + DPYV++ +      + +TR      NP++NE
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73

Query: 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTL 402
            F F  + P+Q   + L   +   +    + +G+  
Sbjct: 74  TFEFI-LDPNQ--ENVLEITLMDANYVMDETLGTAT 106

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 91  ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
            +Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LE
Sbjct: 68  YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 91  ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
            +Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LE
Sbjct: 214 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 257

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQ 377
           V+  +   L+   T +  +D Y+KV      Q+ +T V+    NP + ++  F  +    
Sbjct: 398 VSNFRAEHLWGDYTTA--TDAYLKVFF--GGQEFRTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 378 LKGSTLHFVVFSFDRYSRDD-IGST 401
             G  L   V+  D    DD +GS 
Sbjct: 454 --GGPLRVQVWDADYGWDDDLLGSC 476

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
               +   +A +L     T   D Y+KV+   +     + +T V     NP + +   FE
Sbjct: 394 AHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQ-----EFRTGVVWNNNNPRWTDKMDFE 447

Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
               +     L + + D D    ++++G  D 
Sbjct: 448 NVLLSTGGP-LRVQVWDADYGWDDDLLGSCDR 478

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 31/114 (27%)

Query: 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGI 373
           ++L V V K +     D      + YV + +     K  T  +R +  P + ++F F   
Sbjct: 5   SLLCVGVKKAKF----DGAQEKFNTYVTLKV--QNVKSTTIAVRGS-QPSWEQDFMF--- 54

Query: 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                                 + +   L   V++      D +VG V+  L++
Sbjct: 55  --------------------EINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRT 87

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 24/121 (19%)

Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
           +   + V KA+     +     + YV + +         K T +  R   P + + F+FE
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMFE 55

Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWL 619
           +     + + L L +  W++           L  D   GT       +  S      EWL
Sbjct: 56  I-----NRLDLGLTVEVWNK----------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 100

Query: 620 T 620
           T
Sbjct: 101 T 101

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 27/112 (24%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L+V +    +L       G +D   KV      Q   +RVL    +    +E        
Sbjct: 23  LIVHLKTVSEL------RGRADRIAKVTF--RGQSFYSRVLENCEDVADFDE-------- 66

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                       F +   S  D    L   +F++ +   + ++G     LQ 
Sbjct: 67  -----------TFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQK 107

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFE 559
              + +     L      G AD   KV       R     + V +   +    +E+F + 
Sbjct: 22  ALIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWP 71

Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           V +    +  LE+ + ++ +V  N++IG   +
Sbjct: 72  VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRM 103

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 312 KENVLVVTVIKCRDLFIKDTPSGS-SDPYVKVHLL---PDKQKVKTR-VLRKTRNPIYNE 366
           +   L V +I  + L   +    S  DP V V +     D    +T  +     NP ++ 
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554

Query: 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
           EF F    P     + + F+V  +D  S++D 
Sbjct: 555 EFEFEVTVPDL---ALVRFMVEDYDSSSKNDF 583

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYK 532
           +P  LR  +       L+        R  + ++  + LPK++     + DP V V +   
Sbjct: 472 KPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGV 531

Query: 533 GQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG 587
           G+    ++T V      NP ++  F FEV   +L    +  ++ D+D  +KN+ IG
Sbjct: 532 GRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIG 585

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 31/117 (26%)

Query: 311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
              ++L V V K +     D      + YV + +     +  T  +R +  P + ++F F
Sbjct: 11  GILSLLCVGVKKAKF----DGAQEKFNTYVTLKV--QNVESTTIAVRGS-QPSWEQDFMF 63

Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                                    + +   L   V++      D +VG V+  L++
Sbjct: 64  -----------------------EINRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRT 96

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 24/107 (22%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
           S G G IL  LC         + V KA+     +     + YV +    K Q V  + T 
Sbjct: 6   SGGGGGILSLLC---------VGVKKAKFDGAQEKF---NTYVTL----KVQNV--ESTT 47

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR-VTKNEVIGR 588
           +  R   P + + F+FE+     + + L L +  W++ +  + ++G 
Sbjct: 48  IAVRGSQPSWEQDFMFEI-----NRLDLGLTVEVWNKGLIWDTMVGT 89

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKT---RNPIYNEEFT 369
           +NVL + +I+ R+L  K         Y ++  L D    +T    ++       + E F 
Sbjct: 10  DNVLKLWIIEARELPPKK------RYYCELC-LDDMLYARTTSKPRSASGDTVFWGEHFE 62

Query: 370 FTGITPHQLKGSTLHFVVFSFDRYSRDD 397
           F  +   +     L+       +  +  
Sbjct: 63  FNNLPAVRALRLHLYRDSDKKRKKDKAG 90

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK-KRTLNPVYNESFVF 558
           N   + +++AR LP          Y ++ L       A+  +  +        + E F F
Sbjct: 11  NVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63

Query: 559 EVPADNLDSVSLELLLLDWD---RVTKNEVIGRLDLGGDKSSGTALTHW 604
                         L  D D   +  K   +G + +     +G   T  
Sbjct: 64  NNLPA--VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 81/608 (13%), Positives = 163/608 (26%), Gaps = 195/608 (32%)

Query: 59  LKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEF 118
           L  P        +     Y+++     Y     NQ   +Y     Q  +KL++A      
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQR-DRLYND---NQVFAKYNVSRLQPYLKLRQA------ 143

Query: 119 AEKTVKKLQKEVDRLEVSGHTVLGLGLAG-LVFAATVCLATCYCRRRTSPLEAKKLALSQ 177
               + +L+            + G+  +G    A  VC         +  ++        
Sbjct: 144 ----LLELRPA------KNVLIDGVLGSGKTWVALDVC--------LSYKVQ-------- 177

Query: 178 MTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQ 237
              K    +           +L      +  T +  L         +      +S +   
Sbjct: 178 --CKMDFKI----------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 238 PCVALPGTVVITENEKAAP---LVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDG 294
              ++   +      K      LVL                    +     N +  +   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL-------------------LNVQ---NAKAWNA-- 261

Query: 295 NAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVH-----LLPDKQ 349
                     F +  +    +L+ T    R   + D  S ++  ++ +      L PD+ 
Sbjct: 262 ----------FNLSCK----ILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 350 KVKTRVLRKTRNPIYNEEFTFTGIT----PHQ-LKGSTLHFVVFSFDRYSRDDIGSTLHF 404
           K    +L K           +        P + L  +     + +     RD + +  ++
Sbjct: 304 K---SLLLK-----------YLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNW 347

Query: 405 VVFSFDRYSRDDIVGEVFY-SLQSFETYGSTLHFVVFSFD---------RYSRDDIVGEV 454
              + D+ +   I+ E     L+  E         VF                D I  +V
Sbjct: 348 KHVNCDKLTT--II-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 455 FYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTI--VVLKARNL 512
              +     Y  SL   +  +   + I S     I L L      N + +   ++   N+
Sbjct: 405 MVVVNKLHKY--SLVE-KQPKESTISIPS-----IYLELK-VKLENEYALHRSIVDHYNI 455

Query: 513 PK-MDVTGLADP----YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS 567
           PK  D   L  P    Y   ++ +          H+K                  ++ + 
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH----------HLKN----------------IEHPER 489

Query: 568 VSL-ELLLLD--W-------DRVTKNEVIGRLDLGGD----KSSGTALTHWTDVCNSPRR 613
           ++L  ++ LD  +       D    N     L+        K       +  D      R
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDNDPKYER 543

Query: 614 QIAEWLTY 621
            +   L +
Sbjct: 544 LVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	622
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.94
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.93
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.92
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.91
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.85
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.83
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.83
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.82
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.82
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.82
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.82
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.82
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.81
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.81
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.81
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.81
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.81
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.8
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.8
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.8
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.8
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.8
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.79
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.79
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.79
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.78
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.78
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	99.78
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.78
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.78
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.78
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.77
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.77
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.77
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.77
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.77
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.76
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.76
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.71
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.7
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.69
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.69
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.67
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.67
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.67
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.67
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.67
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.67
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.67
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.66
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.66
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.65
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.65
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.63
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.63
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.61
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.6
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.6
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.6
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.59
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.57
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.54
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.47
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.44
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.4
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.39
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.37
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.37
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.37
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.35
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.32
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.31
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.3
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.29
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.24
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.24
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	99.22
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.16
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.05
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.84
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.82
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.8
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.79
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.67
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.67
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.67
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	97.98
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.85
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	97.83
2z5i_A	52	TM, general control protein GCN4 and tropomyosin a	97.8
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.78
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	97.75
3mud_A	175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	95.49
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.99
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	92.62
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	92.36
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.97
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.4
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.12
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.49
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.31
3zwh_Q	45	Myosin-9; Ca-binding protein-motor protein complex	84.41
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	83.36
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	82.32
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	81.77
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	80.49

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=3.6e-42  Score=353.84  Aligned_cols=268  Identities=46%  Similarity=0.788  Sum_probs=232.6

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      ...|+|.+++.|.+..+.|.|.|++|++|+.+| .++.+||||++++.+++ +.++|+++++++||+|||+|.|. +...
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~-v~~~   80 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYS   80 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCS-SSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEEC-CCGG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEE-echH
Confidence            357999999999999999999999999999998 78999999999997654 38999999999999999999997 6666


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEEE
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFY  456 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~~  456 (622)
                      ++....|.|.||                   |++.++++++||++.++|.++....                  ....|+
T Consensus        81 ~~~~~~l~~~V~-------------------d~d~~~~~~~lG~~~i~l~~l~~~~------------------~~~~w~  123 (284)
T 2r83_A           81 ELAGKTLVMAVY-------------------DFDRFSKHDIIGEFKVPMNTVDFGH------------------VTEEWR  123 (284)
T ss_dssp             GCTTCEEEEEEE-------------------ECCSSSCCCEEEEEEEEGGGCCCSS------------------CEEEEE
T ss_pred             HhCcCEEEEEEE-------------------ECCCCCCCceeEEEEEcchhcccCC------------------cceeEE
Confidence            666666777776                   8898889999999999999987221                  123455


Q ss_pred             eeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEe
Q psy1415         457 SLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRV  536 (622)
Q Consensus       457 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~  536 (622)
                      .+.....                 ......|++.+++.|.|..+.|.|.|++|++|+.+|.+|.+||||++++.+++...
T Consensus       124 ~L~~~~~-----------------~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~  186 (284)
T 2r83_A          124 DLQSAEK-----------------EEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL  186 (284)
T ss_dssp             ECBCCSS-----------------CCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEE
T ss_pred             Eeecccc-----------------ccccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEe
Confidence            5443211                 01235689999999999999999999999999999999999999999998877776


Q ss_pred             eEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCcee
Q psy1415         537 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIA  616 (622)
Q Consensus       537 ~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~  616 (622)
                      .+++|.++++++||.|||.|.|.++.++++...|.|+|||++.++++++||++.|++. ..+.+..||++++..|++.++
T Consensus       187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~-~~~~~~~~w~~~~~~~~~~~~  265 (284)
T 2r83_A          187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSDMLANPRRPIA  265 (284)
T ss_dssp             EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETT-CCHHHHHHHHHHHHSTTSCEE
T ss_pred             eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCC-CCCcHHHHHHHHHHCCCCchh
Confidence            7899999999999999999999998877777789999999999999999999999995 457889999999999999999


Q ss_pred             eEEecC
Q psy1415         617 EWLTYR  622 (622)
Q Consensus       617 ~w~~l~  622 (622)
                      +||+|.
T Consensus       266 ~W~~L~  271 (284)
T 2r83_A          266 QWHTLQ  271 (284)
T ss_dssp             EEEECB
T ss_pred             eeeecC
Confidence            999984

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=7e-43  Score=361.45  Aligned_cols=269  Identities=38%  Similarity=0.706  Sum_probs=226.1

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      ...|+|.+++.|.+..+.|.|.|++|++|+.+| .++.+||||++++.+++. +++|+++++++||+|||+|.|. +...
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   81 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLA   81 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCS-TTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcC-CCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEE-ecHH
Confidence            457999999999999999999999999999999 789999999999976554 8999999999999999999997 6667


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEe-CCccccCCceeeEEEEeeccCCCCccceeEE
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS-LQSFETYGSTLHFVVFSFDRYSRDDIVGEVF  455 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~  455 (622)
                      +++...|.|.||                   |++.++++++||++.++ +..+...                 ......|
T Consensus        82 ~l~~~~L~~~V~-------------------d~d~~~~~~~iG~~~i~~l~~~~~~-----------------~~~~~~w  125 (296)
T 1dqv_A           82 ELAQRKLHFSVY-------------------DFDRFSRHDLIGQVVLDNLLELAEQ-----------------PPDRPLW  125 (296)
T ss_dssp             GGSSCCCEEEEE-------------------ECCSSSCCCEEEEEECCCTTGGGSS-----------------CSSCCCC
T ss_pred             HhcCCEEEEEEE-------------------EcCCCCCCceEEEEEeccccccccC-----------------Cccceee
Confidence            666656666666                   99999999999999985 4444310                 0112234


Q ss_pred             EeeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE
Q psy1415         456 YSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR  535 (622)
Q Consensus       456 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~  535 (622)
                      +.+....                  ......|++.++++|.|..+.|+|.|++|++|+++|..|.+||||++++.+++..
T Consensus       126 ~~L~~~~------------------~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~  187 (296)
T 1dqv_A          126 RDILEGG------------------SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR  187 (296)
T ss_dssp             EECBCCS------------------SCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCT
T ss_pred             ecccccc------------------ccccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcC
Confidence            4443211                  0223579999999999999999999999999999999999999999999655554


Q ss_pred             eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      ..+++|+++++++||.|||.|.|.+..+++.+..|.|+|||++.++++++||.+.|++......+..||++|+.+|++++
T Consensus       188 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~  267 (296)
T 1dqv_A          188 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV  267 (296)
T ss_dssp             TSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCS
T ss_pred             ccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCce
Confidence            55789999999999999999999998766666679999999999999999999999997654458999999999999999


Q ss_pred             eeEEecC
Q psy1415         616 AEWLTYR  622 (622)
Q Consensus       616 ~~w~~l~  622 (622)
                      ++||+|+
T Consensus       268 ~~w~~L~  274 (296)
T 1dqv_A          268 EHWHQLV  274 (296)
T ss_dssp             CSCCCCB
T ss_pred             eEeeecc
Confidence            9999984

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=1.8e-33  Score=289.01  Aligned_cols=241  Identities=22%  Similarity=0.293  Sum_probs=194.5

Q ss_pred             ceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCC
Q psy1415         139 TVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSP  218 (622)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~  218 (622)
                      ..+|.+-+++.|..                ....|.++|+.++++++.+..+.+||   ||++.+.+.+++..+|+++++
T Consensus         3 ~~~G~l~~~l~y~~----------------~~~~L~v~v~~a~~L~~~d~~~~~dp---yv~v~~~~~~~~~~~T~~~~~   63 (284)
T 2r83_A            3 EKLGKLQYSLDYDF----------------QNNQLLVGIIQAAELPALDMGGTSDP---YVKVFLLPDKKKKFETKVHRK   63 (284)
T ss_dssp             CCCCEEEEEEEEET----------------TTTEEEEEEEEEECCCCCSSSSSCCE---EEEEEEETCTTSCEECCCCCS
T ss_pred             cceeEEEEEEEEEC----------------CCCEEEEEEEEeeCCCCCCCCCCCCe---EEEEEEEcCCCceEeCCcccC
Confidence            35788888888876                44455555555555666666667899   999999887778889999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCCCCCCCCCCCCccccccccccccCCCCCCC
Q psy1415         219 TGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEG  298 (622)
Q Consensus       219 t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (622)
                      |+||.|||+|.|.. ...+...+.|+|.|||.|.+++|++||++.+++.++....      ..-.|..+....  .....
T Consensus        64 ~~nP~wne~f~f~v-~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~--~~~~~  134 (284)
T 2r83_A           64 TLNPVFNEQFTFKV-PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH------VTEEWRDLQSAE--KEEQE  134 (284)
T ss_dssp             CSSCEEEEEEEECC-CGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS------CEEEEEECBCCS--SCCCC
T ss_pred             CCCCeeCceEEEEe-chHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCC------cceeEEEeeccc--ccccc
Confidence            99999999999973 3334456899999999999999999999999999986543      112355444211  12234


Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      ..|+|.+.+.|.+..+.|.|.|++|++|+.+| .++.+||||++++.+++.   +++|+++++++||+|||+|.|. +..
T Consensus       135 ~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d-~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~  212 (284)
T 2r83_A          135 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPF  212 (284)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCT
T ss_pred             ccccEEEEEEecCcCCceEEEEEEeECCCCcC-CCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEe-CCH
Confidence            57999999999999999999999999999998 789999999999976543   7899999999999999999997 666


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      .+++...|.|.||                   |++.++++++||++.++++.+
T Consensus       213 ~~l~~~~l~i~V~-------------------d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          213 EQIQKVQVVVTVL-------------------DYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             TTGGGEEEEEEEE-------------------ECCSSSCCCEEEEEEEETTCC
T ss_pred             HHhCceEEEEEEE-------------------eCCCCCCCcEEEEEEECCCCC
Confidence            6666555666666                   999999999999999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=2.6e-33  Score=289.60  Aligned_cols=242  Identities=20%  Similarity=0.235  Sum_probs=191.0

Q ss_pred             ceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCC
Q psy1415         139 TVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSP  218 (622)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~  218 (622)
                      ..+|.+.+++.|..                ....|.++++.++++++.+..+.+||   ||++.++|.+++..||+++++
T Consensus         4 ~~~G~l~~~l~y~~----------------~~~~L~v~v~~a~~L~~~d~~g~~dP---yv~v~l~~~~~~~~kT~v~~~   64 (296)
T 1dqv_A            4 APCGRISFALRYLY----------------GSDQLVVRILQALDLPAKDSNGFSDP---YVKIYLLPDRKKKFQTKVHRK   64 (296)
T ss_dssp             CSSCEEEEEEECCS----------------SSCEEEEEEEEEECCCCCSTTSCCCE---EEEEECTTSTTSCEECCCCCS
T ss_pred             CeeeEEEEEEEEeC----------------CCCEEEEEEEEeECCCCcCCCCCcCe---EEEEEEEcCCCeeEeCCccCC
Confidence            45788999999877                44455555666666666666667899   999999998888999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccC-CCCCCCCCCCCCCCccccccccccccCCCCCC
Q psy1415         219 TGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPT-TAGNGPAANGTDSDDSCALVNKETVDCDGNAE  297 (622)
Q Consensus       219 t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (622)
                      |+||.|||+|.|.. .+.+.....|+|.|||.|.+++|++||++.++ +.++......     ...|..+...   ....
T Consensus        65 t~nP~wne~f~f~v-~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~-----~~~w~~L~~~---~~~~  135 (296)
T 1dqv_A           65 TLNPIFNETFQFSV-PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD-----RPLWRDILEG---GSEK  135 (296)
T ss_dssp             CSSCEEEEEEEEEC-CGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS-----CCCCEECBCC---SSCC
T ss_pred             CCCCcEeeEEEEEe-cHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCcc-----ceeeeccccc---cccc
Confidence            99999999999973 44445567999999999999999999999984 4443321110     1124443321   1233


Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccC
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ...|+|.+.+.|.+..+.|.|.|++|++|+.+| .+|.+||||++++.+++   .++||+++++++||+|||.|.|. +.
T Consensus       136 ~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d-~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~  213 (296)
T 1dqv_A          136 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD-LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VA  213 (296)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-SSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CC
T ss_pred             cccceEEEEEEeccccceeEEEEEEeecCCccC-CCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE-cC
Confidence            457999999999999999999999999999999 78999999999997544   28899999999999999999997 66


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..++....|.|.||                   |++.++++++||++.++++.+.
T Consensus       214 ~~~l~~~~L~i~V~-------------------d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          214 PESVENVGLSIAVV-------------------DYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             SGGGGSCCCCCEEE-------------------ECCSSSCCEEEEECCCSSCTTC
T ss_pred             HHHccCcEEEEEEE-------------------eCCCCCCCceEEEEEECCccCC
Confidence            66554444555555                   9999999999999999998774

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.94  E-value=6.4e-26  Score=206.78  Aligned_cols=136  Identities=46%  Similarity=0.896  Sum_probs=126.8

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.++++|.+..+.|+|.|++|++|+.++..|.+||||++++.+.+....+++|+++++++||.|||.|.|.+...++
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            69999999999999999999999999999999999999999999887776678999999999999999999999987776


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .+..|.|+|||++.++++++||++.|+|. ..+.+..||++|+..|++.+++||+|+
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~-~~~~~~~~W~~l~~~~~~~~~~Wh~L~  137 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWK-SGPGEVKHWKDMIARPRQPVAQWHQLK  137 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSS-SCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEccc-cCChHHHHHHHHHhCCCCeEEEEeecC
Confidence            66789999999999999999999999996 467889999999999999999999986

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.93  E-value=9.6e-26  Score=209.71  Aligned_cols=139  Identities=55%  Similarity=0.952  Sum_probs=122.1

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.+..
T Consensus        13 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   92 (153)
T 1w15_A           13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC   92 (153)
T ss_dssp             ---CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred             CccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence            34679999999999999999999999999999999999999999999887776678899999999999999999999987


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .++.+..|.|+|||++.++++++||++.|++.. .+.+..+||+|+..|++.+++||+|+
T Consensus        93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~p~~~~~~Wh~L~  151 (153)
T 1w15_A           93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA-EGSGGGHWKEICDFPRRQIAKWHMLC  151 (153)
T ss_dssp             SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC-CSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC-CchHHHHHHHHHhCCCCeeeeccccc
Confidence            777667899999999999999999999999976 78889999999999999999999986

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.92  E-value=2.4e-24  Score=201.55  Aligned_cols=139  Identities=47%  Similarity=0.863  Sum_probs=127.9

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.+..+.|+|.|++|+||+.++.+|.+||||++++.+++....+++|+++++++||.|||.|.|.+..
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   87 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF   87 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence            45689999999999999999999999999999999999999999999877766678899999999999999999999987


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .++....|.|+|||++.++++++||++.|++.. .+.+..||++|+..|++.+++||+|.
T Consensus        88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~-~~~~~~~w~~l~~~~~~~~~~W~~L~  146 (159)
T 1tjx_A           88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS-TGAELRHWSDMLANPRRPIAQWHTLQ  146 (159)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC-CHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             HHhCCcEEEEEEEECCCCCCCceEEEEEECCCC-CCcHHHHHHHHHHCCCCeeeeEEECc
Confidence            666666799999999999999999999999964 57889999999999999999999984

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.91  E-value=2.1e-24  Score=203.58  Aligned_cols=139  Identities=32%  Similarity=0.610  Sum_probs=125.0

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.+..+.|+|.|++|++|+.++.+|.+||||++++.+.+....+++|+++++++||.|||.|.|.+..
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            45689999999999999999999999999999999999999999999765444558899999999999999999999987


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      .++....|.|+|||++.++++++||++.|+|.. .+.+..+||+|+..|++.+++||.|+
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~-~~~~~~~W~~l~~~~~~~~~~Wh~L~  158 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA-KGERLKHWYECLKNKDKKIERWHQLQ  158 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC-CHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEeccc-CCchhHHHHHHHhCCCCcceEeeECC
Confidence            666667899999999999999999999999964 56788999999999999999999984

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=5.7e-22  Score=184.52  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=109.1

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC-CeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~-~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ...|+|.+++.|.+..+.|+|.|++|+||+++|.+|.+||||++++.+. +....++||+++++|+||+|||.|.|.|..
T Consensus        27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred             CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence            4579999999999999999999999999999999999999999999762 222337899999999999999999999876


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC--Ccccchhhhhh
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVC  608 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~  608 (622)
                      .++....|.|+|||+++++++++||++.|+|.++.  +....+||+|.
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            55556679999999999999999999999998763  56778888875

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=8.5e-21  Score=170.77  Aligned_cols=123  Identities=24%  Similarity=0.477  Sum_probs=100.8

Q ss_pred             CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cCC
Q psy1415         485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PAD  563 (622)
Q Consensus       485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~~  563 (622)
                      ..|+|.+++.|.+..+.|+|.|++|++|++++..|.+||||++++.+++....+++|+++++++||.|||.|.|.+ ...
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            4699999999999999999999999999999999999999999997654444588999999999999999999995 434


Q ss_pred             CCCccEEEEEEEEcCCCCC--CceeEEEEECCCCCCCcccchhhhh
Q psy1415         564 NLDSVSLELLLLDWDRVTK--NEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       564 ~l~~~~L~i~V~D~d~~~~--d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      ++....|.|+|||++.+++  +++||++.|+|.++...+..+||+|
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L  128 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL  128 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEEC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCcCCccEEC
Confidence            4455679999999999987  9999999999986554445566654

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=172.68  Aligned_cols=130  Identities=28%  Similarity=0.521  Sum_probs=111.8

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|++++..| +||||++++.+++....+++|+++++++||.|||.|.|.+..
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   85 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL   85 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence            3567999999999999999999999999999999999 999999999865544457899999999999999999999875


Q ss_pred             CCCCccEEEEEEEEcCCCCC--CceeEEEEECCCCCC-CcccchhhhhhcCCCC
Q psy1415         563 DNLDSVSLELLLLDWDRVTK--NEVIGRLDLGGDKSS-GTALTHWTDVCNSPRR  613 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~--d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~  613 (622)
                      .++....|.|+|||++.+++  +++||++.|+|..+. +....+||+|....+.
T Consensus        86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~  139 (142)
T 2dmg_A           86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGP  139 (142)
T ss_dssp             HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSC
T ss_pred             HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCCC
Confidence            55555579999999998863  579999999997654 4578999999987543

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.82  E-value=6e-21  Score=176.25  Aligned_cols=131  Identities=26%  Similarity=0.436  Sum_probs=112.9

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP  561 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~  561 (622)
                      ...+|+|.++++|.+..+.|.|.|++|++|+.++ ..|.+||||++++.+++....+++|+++++++||.|||.|.|.+.
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   85 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP   85 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence            3567999999999999999999999999999988 589999999999976554445789999999999999999999998


Q ss_pred             CCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCC
Q psy1415         562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRR  613 (622)
Q Consensus       562 ~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~  613 (622)
                      ..++....|.|+|||++.++++++||++.|+|..+. +....+||+|.+....
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            877767789999999999999999999999997543 3466789999877654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=1.5e-20  Score=174.32  Aligned_cols=127  Identities=33%  Similarity=0.642  Sum_probs=109.1

Q ss_pred             ccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec
Q psy1415         482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP  561 (622)
Q Consensus       482 ~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~  561 (622)
                      .....|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++.  .+++|+++++++||.|||.|.|.+.
T Consensus        24 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~  101 (152)
T 1rsy_A           24 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVP  101 (152)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCC
T ss_pred             CCCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEEeec
Confidence            34567999999999999999999999999999999999999999999975433  3678999999999999999999987


Q ss_pred             CCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       562 ~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      ..++....|.|+|||++.++++++||++.|+|..+. +....+||+|.+.
T Consensus       102 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             HHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             HHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            655555679999999999999999999999997653 4566788887654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=5.9e-21  Score=174.49  Aligned_cols=132  Identities=23%  Similarity=0.459  Sum_probs=113.8

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ec
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VP  561 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~  561 (622)
                      +...|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|. +.
T Consensus         4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~   83 (141)
T 1v27_A            4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH   83 (141)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence            45689999999999999999999999999999999999999999998654333457899999999999999999999 44


Q ss_pred             CCCCCccEEEEEEEEcCCCCC--CceeEEEEECCCCCCCcccchhhhhhcCCCCc
Q psy1415         562 ADNLDSVSLELLLLDWDRVTK--NEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQ  614 (622)
Q Consensus       562 ~~~l~~~~L~i~V~D~d~~~~--d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~  614 (622)
                      ..++....|.|+|||++.+++  +++||++.|+|.++......+||+|.....+.
T Consensus        84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~~~g~  138 (141)
T 1v27_A           84 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDSGP  138 (141)
T ss_dssp             TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCCSSCC
T ss_pred             HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCCCCceEECcccccCC
Confidence            445555679999999999987  99999999999876666688999998876554

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=9.9e-20  Score=166.05  Aligned_cols=125  Identities=23%  Similarity=0.352  Sum_probs=109.6

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD  563 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~  563 (622)
                      ...|+|.+++.|.+..+.|+|.|++|+   ++|.+|.+||||++++.++... .+++|+++++++||.|||.|.|.+...
T Consensus        10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~-~~~kT~v~~~tlnP~wnE~f~f~v~~~   85 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVLPLAEE   85 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEE-EEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCc-ccEecccCcCCCCCcCCceEEEEecHH
Confidence            467999999999999999999999999   4788899999999999764332 367999999999999999999999877


Q ss_pred             CCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415         564 NLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR  612 (622)
Q Consensus       564 ~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~  612 (622)
                      ++....|.|+|||++.++++++||++.|+|.++. +....+||+|.....
T Consensus        86 ~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  135 (138)
T 1wfm_A           86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCCc
Confidence            7777789999999999999999999999998765 567788999987543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=6.6e-20  Score=170.54  Aligned_cols=112  Identities=22%  Similarity=0.279  Sum_probs=98.3

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC----ceeEeeeecCCCCCeeeceeEEcc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVKTRVLRKTRNPIYNEEFTFTG  372 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~nP~W~e~f~f~~  372 (622)
                      ....|+|++++.|.+..+.|.|.|++|+||+.+| .+|.+||||++++.+..    .++||+++++|+||+|||+|.|. 
T Consensus        26 ~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~-  103 (155)
T 2z0u_A           26 AVGATRIQIALKYDEKNKQFAILIIQLSNLSALL-QQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS-  103 (155)
T ss_dssp             --CCEEEEEEEEEETTTTEEEEEEEEEECGGGTC-CSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE-
T ss_pred             cCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcc-cCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE-
Confidence            3457999999999999999999999999999999 79999999999997632    18999999999999999999998 


Q ss_pred             cCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         373 ITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       373 ~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +...++....|.|.||                   |++.++++++||++.++|+++.
T Consensus       104 v~~~~l~~~~L~~~V~-------------------d~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          104 MSYPALHQKTLRVDVC-------------------TTDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             CCHHHHHHCEEEEEEE-------------------EECTTSCEEEEEEEEEECTTSC
T ss_pred             cCHHHhCcCEEEEEEE-------------------ECCCCCCCcEEEEEEEEHHHcc
Confidence            7766665556666666                   9999999999999999999985

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.81  E-value=6.5e-20  Score=170.28  Aligned_cols=129  Identities=19%  Similarity=0.353  Sum_probs=107.3

Q ss_pred             ccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec
Q psy1415         482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP  561 (622)
Q Consensus       482 ~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~  561 (622)
                      .....|++.++++|.+..+.|+|.|++|++|++++ .|.+||||++++.+.+....+++|+++++++||.|||.|.|.+.
T Consensus         9 ~~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   87 (153)
T 3fbk_A            9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ   87 (153)
T ss_dssp             ----CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECC
T ss_pred             ccCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecc
Confidence            34578999999999999999999999999999999 79999999999976554445789999999999999999999996


Q ss_pred             CCCCCccEEEEEEEEcCCCCC-CceeEEEEECCCCCC--CcccchhhhhhcCCC
Q psy1415         562 ADNLDSVSLELLLLDWDRVTK-NEVIGRLDLGGDKSS--GTALTHWTDVCNSPR  612 (622)
Q Consensus       562 ~~~l~~~~L~i~V~D~d~~~~-d~~LG~v~i~L~~~~--~~~~~~W~~L~~~p~  612 (622)
                      ..++.. .|.|+|||++.+++ |++||++.|+|..+.  +....+||.|.+...
T Consensus        88 ~~~~~~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           88 EEDDQK-RLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             GGGTTS-EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             cHHhCC-EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence            656654 49999999999887 999999999997544  356667777766543

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=5.2e-19  Score=161.12  Aligned_cols=115  Identities=46%  Similarity=0.800  Sum_probs=99.3

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccC
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.+| .+ +.+||||++++.+++ .+++|+++++++||+|||+|.|..+.
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~   83 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMD-EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP   83 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCB-TTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcC
Confidence            3457999999999999999999999999999998 54 899999999997654 49999999999999999999995366


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                      .+++....|.|.||                   |++.++++++||++.++|.++...
T Consensus        84 ~~~~~~~~l~i~V~-------------------d~d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A           84 YTQIQELALHFTIL-------------------SFDRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             STTGGGCEEEEEEE-------------------EECSSCCCCCCEEEEEECTTCCCT
T ss_pred             HHHhccCEEEEEEE-------------------ECCCCCCCcEEEEEEEehhHccCC
Confidence            66665556666666                   899889999999999999999743

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=4.9e-19  Score=161.91  Aligned_cols=113  Identities=42%  Similarity=0.701  Sum_probs=98.7

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      .+..|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++. ++||+++++++||+|||+|.|.+++.
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A            9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKD-FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCS-SSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCC-CCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCH
Confidence            3457999999999999999999999999999998 789999999999976544 89999999999999999999974455


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        88 ~~~~~~~l~i~V~-------------------d~d~~~~~~~iG~~~i~l~~l~  122 (141)
T 2d8k_A           88 EKVVQRILYLQVL-------------------DYDRFSRNDPIGEVSIPLNKVD  122 (141)
T ss_dssp             HHHTTSEEEEEEE-------------------ECCSSSSCEEEEEEEEETTTSC
T ss_pred             HHcccCEEEEEEE-------------------ECCCCCCCcEEEEEEEEhhhhc
Confidence            5555555666666                   9999899999999999999997

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.81  E-value=3.7e-20  Score=169.79  Aligned_cols=125  Identities=34%  Similarity=0.643  Sum_probs=108.7

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.++++|.+..+.|+|.|++|++|+.++..|.+||||++++.+++.  .+++|+++++++||.|||.|.|.+..
T Consensus        17 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~   94 (143)
T 3f04_A           17 VEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPY   94 (143)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             ccCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEEeecH
Confidence            3568999999999999999999999999999999999999999999976543  37799999999999999999999876


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      .++.+..|.|+|||++.++++++||++.|+|.++. +....+||+|..
T Consensus        95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             hhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            65555679999999999999999999999997554 356677887753

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=7.3e-20  Score=167.44  Aligned_cols=127  Identities=35%  Similarity=0.602  Sum_probs=108.4

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PA  562 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~  562 (622)
                      ...|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++.  .+++|+++++++||.|||.|.|.+ +.
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCS--SEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             ceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCC--ccEeCceEcCCCCCccccEEEECccCH
Confidence            457999999999999999999999999999999999999999999975433  367999999999999999999985 32


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR  612 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~  612 (622)
                      .++....|.|+|||++.++++++||++.|+|.++. +....+||+|.....
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence            23334579999999999999999999999998654 345788999887643

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=4.2e-19  Score=162.10  Aligned_cols=123  Identities=22%  Similarity=0.465  Sum_probs=102.2

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccC
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ...|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++   .+++|+++++++||+|||+|.|.++.
T Consensus         5 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~   83 (141)
T 1v27_A            5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH   83 (141)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-SSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEccCCCCcC-CCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence            457999999999999999999999999999998 78999999999997644   38999999999999999999997555


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCC--cceeeEEEEeCCccccCCceeeEEEEeec
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR--DDIVGEVFYSLQSFETYGSTLHFVVFSFD  443 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~~~l~  443 (622)
                      ..++....|.|.||                   |++..++  +++||++.++|.++...+   ...|+.+.
T Consensus        84 ~~~~~~~~l~i~V~-------------------d~d~~~~~~~~~lG~~~i~l~~l~~~~---~~~W~~L~  132 (141)
T 1v27_A           84 RREFRERMLEITLW-------------------DQARVREEESEFLGEILIELETALLDD---EPHWYKLQ  132 (141)
T ss_dssp             TTGGGTCEEEEEEE-------------------EBCSSSSCCBCCCEEEEEEGGGCCCSS---EEEEEECB
T ss_pred             HHHhcCCEEEEEEE-------------------ECCCCcCCCCceEEEEEEEccccCCCC---CCceEECc
Confidence            55555556666666                   8888876  999999999999987322   33444443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=7.4e-19  Score=157.99  Aligned_cols=112  Identities=24%  Similarity=0.518  Sum_probs=93.7

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      ..|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++   .+++|+++++++||+|||+|.|.++..
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   81 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   81 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCT-TSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCC-CCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence            35999999999999999999999999999998 78999999999997754   399999999999999999999975555


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCC--cceeeEEEEeCCcccc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR--DDIVGEVFYSLQSFET  430 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~--d~~iG~~~i~l~~l~~  430 (622)
                      .++....|.|.||                   |++..++  +++||++.++|.++..
T Consensus        82 ~~~~~~~l~~~V~-------------------d~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           82 REFRERMLEITLW-------------------DQARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             GGGGGCEEEEEEE-------------------EC-------CEEEEEEEEEGGGCCC
T ss_pred             HHhcCCeEEEEEE-------------------ECCcCcCcCCceeEEEEEEccccCC
Confidence            5555556666666                   8888876  9999999999999873

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=2.3e-19  Score=163.42  Aligned_cols=128  Identities=27%  Similarity=0.520  Sum_probs=108.8

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-e
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-V  560 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v  560 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|++++.. |.+||||++++.+++.  .+++|+++++++||.|||.|.|. +
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~v   82 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGI   82 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcCc
Confidence            345799999999999999999999999999999985 8999999999976433  47899999999999999999996 7


Q ss_pred             cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-ccc-chhhhhhcCCC
Q psy1415         561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TAL-THWTDVCNSPR  612 (622)
Q Consensus       561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~-~~W~~L~~~p~  612 (622)
                      +..++....|.|+|||++.++++++||++.|+|.++.. .+. ..|++|...+.
T Consensus        83 ~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS  136 (138)
T ss_dssp             CSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred             CHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCC
Confidence            76666667899999999999999999999999986543 333 45688776543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.80  E-value=6.7e-20  Score=167.86  Aligned_cols=126  Identities=26%  Similarity=0.449  Sum_probs=105.0

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ec
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VP  561 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~  561 (622)
                      ....|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|. +.
T Consensus        12 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~   91 (142)
T 2chd_A           12 ATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT   91 (142)
T ss_dssp             --CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred             CCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence            45689999999999999999999999999999999999999999999764444457899999999999999999998 65


Q ss_pred             CCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhh
Q psy1415         562 ADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVC  608 (622)
Q Consensus       562 ~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~  608 (622)
                      ..++....|.|+|||++.++++++||++.|+|.++......+|.-.+
T Consensus        92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  138 (142)
T 2chd_A           92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL  138 (142)
T ss_dssp             HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred             HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence            44443457999999999999999999999999866554444444333

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.79  E-value=1.3e-19  Score=164.52  Aligned_cols=121  Identities=23%  Similarity=0.406  Sum_probs=99.5

Q ss_pred             eeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCCCCcc
Q psy1415         490 LLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSV  568 (622)
Q Consensus       490 ~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~l~~~  568 (622)
                      -+.+.|....+.|+|.|++|++|+. +.+|.+||||++++.+++....++||+++++++||.|||.|.|. +...++...
T Consensus        10 ~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~   88 (134)
T 2b3r_A           10 AVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQR   88 (134)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTC
T ss_pred             EEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcC
Confidence            3444455567999999999999997 77899999999999765444457899999999999999999999 775555556


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhhcCC
Q psy1415         569 SLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVCNSP  611 (622)
Q Consensus       569 ~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~p  611 (622)
                      .|.|+|||++.++++++||++.|+|.++.. ....+||+|.+.+
T Consensus        89 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           89 ELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            799999999999999999999999986543 5667888887654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.79  E-value=1.2e-18  Score=159.43  Aligned_cols=115  Identities=35%  Similarity=0.687  Sum_probs=96.7

Q ss_pred             CCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEc
Q psy1415         295 NAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFT  371 (622)
Q Consensus       295 ~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~  371 (622)
                      ......|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.++.   .++||+++++++||+|||+|.|.
T Consensus        10 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~   88 (142)
T 2chd_A           10 DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMD-SNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH   88 (142)
T ss_dssp             ----CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCC-TTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEE
T ss_pred             CCCCccceEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEc
Confidence            445567999999999999999999999999999998 78999999999997643   38999999999999999999996


Q ss_pred             ccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         372 GITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       372 ~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .+...++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        89 ~~~~~~~~~~~l~i~V~-------------------d~d~~~~d~~iG~~~i~l~~l~  127 (142)
T 2chd_A           89 GITEEDMQRKTLRISVC-------------------DEDKFGHNEFIGETRFSLKKLK  127 (142)
T ss_dssp             SCCHHHHHHCEEEEEEE-------------------EECTTSCEEEEEEEEEEGGGCC
T ss_pred             ccCHHHccCCEEEEEEE-------------------ECCCCCCCcEEEEEEEEHHHcC
Confidence            45544444445666655                   9999999999999999999987

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.79  E-value=1.3e-18  Score=159.35  Aligned_cols=111  Identities=44%  Similarity=0.784  Sum_probs=99.2

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      ...|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++. +++|+++++++||+|||+|.|. +...
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   95 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYS   95 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBG-GGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEEC-CCHH
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEe-ecHh
Confidence            457999999999999999999999999999998 788999999999976554 8999999999999999999997 6666


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        96 ~l~~~~L~i~V~-------------------d~d~~~~~~~iG~~~i~l~~l~  129 (143)
T 3f04_A           96 ELGGKTLVMAVY-------------------DFDRFSKHDIIGEFKVPMNTVD  129 (143)
T ss_dssp             HHTTCEEEEEEE-------------------ECCSSSCCEEEEEEEEEGGGCC
T ss_pred             hcCCCEEEEEEE-------------------eCCCCCCCceEEEEEEEHHHcc
Confidence            666666666666                   9999899999999999999997

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=2.1e-18  Score=159.90  Aligned_cols=113  Identities=44%  Similarity=0.781  Sum_probs=98.7

Q ss_pred             CCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       296 ~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      .....|+|.+++.|.+..+.|.|+|++|++|+.++ .++.+||||++++.+++. .+||+++++++||+|||+|.|. +.
T Consensus        24 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~  101 (152)
T 1rsy_A           24 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VP  101 (152)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CC
T ss_pred             CCCCceEEEEEEEEeCCCCEEEEEEEEeECCCCcc-CCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEe-ec
Confidence            34467999999999999999999999999999998 789999999999986544 8999999999999999999997 66


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..++....|.|.||                   |++.++++++||++.++|.++.
T Consensus       102 ~~~l~~~~L~i~V~-------------------d~d~~~~~~~iG~~~i~l~~l~  137 (152)
T 1rsy_A          102 YSELGGKTLVMAVY-------------------DFDRFSKHDIIGEFKVPMNTVD  137 (152)
T ss_dssp             HHHHTTCEEEEEEE-------------------ECCSSSCCEEEEEEEEEGGGCC
T ss_pred             HHHcCCCEEEEEEE-------------------ECCCCCCCcEEEEEEEEchhcc
Confidence            66655556666666                   9999889999999999999986

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.79  E-value=2.2e-18  Score=160.99  Aligned_cols=111  Identities=34%  Similarity=0.630  Sum_probs=97.6

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|.+++.|.+..+.|.|.|++|+||+.++ .++.+||||++++.+++.   .++|+++++++||+|||+|.|. +
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   85 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-V   85 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-C
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCcc-CCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE-c
Confidence            3457999999999999999999999999999999 789999999999976543   7899999999999999999997 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ...++....|.|.||                   |++.++++++||++.+++..+
T Consensus        86 ~~~~l~~~~l~i~V~-------------------d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A           86 PFEQIQKVQVVVTVL-------------------DYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             CGGGGGGCEEEEEEE-------------------ECCSSSCCEEEEEEEEETTCC
T ss_pred             CHHHhCCcEEEEEEE-------------------ECCCCCCCceEEEEEECCCCC
Confidence            666665556666666                   999989999999999999864

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=2.1e-19  Score=166.08  Aligned_cols=125  Identities=31%  Similarity=0.552  Sum_probs=106.4

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.  .+.|+|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.+..
T Consensus        16 ~~~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (149)
T 1a25_A           16 MERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE   93 (149)
T ss_dssp             -CTTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred             CCcceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecc
Confidence            45679999999984  6889999999999999999999999999999765443457899999999999999999999875


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNS  610 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~  610 (622)
                      .+.. ..|.|+|||++.++++++||++.|+|.++......+||+|.+.
T Consensus        94 ~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~~  140 (149)
T 1a25_A           94 SDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  140 (149)
T ss_dssp             GGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBCH
T ss_pred             ccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCccCCeEEccCC
Confidence            4443 4699999999999999999999999986655567788888754

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=161.06  Aligned_cols=113  Identities=37%  Similarity=0.625  Sum_probs=98.8

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.++..++.+||||++++.+++.   +++|+++++++||+|||+|.|. +
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   84 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE-I   84 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE-C
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE-e
Confidence            34579999999999999999999999999998873478999999999986653   8999999999999999999997 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...++....|.|.||                   |++.++++++||++.++|+++.
T Consensus        85 ~~~~~~~~~L~~~V~-------------------d~d~~~~~~~iG~~~i~l~~l~  121 (148)
T 3fdw_A           85 PESLLAQRTLQFSVW-------------------HHGRFGRNTFLGEAEIQMDSWK  121 (148)
T ss_dssp             CSTTGGGCEEEEEEE-------------------EECGGGCEEEEEEEEEEHHHHH
T ss_pred             ChhHhCceEEEEEEE-------------------ECCCCcCCcEEEEEEEEccccc
Confidence            666665556666666                   8998899999999999999986

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=99.78  E-value=1.6e-21  Score=176.43  Aligned_cols=92  Identities=35%  Similarity=0.410  Sum_probs=88.5

Q ss_pred             eccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy1415          41 RRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAE  113 (622)
Q Consensus        41 ~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae  113 (622)
                      .+|||+|++|    +|+||+|||+ |+++|++++.+   +|+    |||||++++++|+++++.|+++|+.|+++||+||
T Consensus        16 ad~KyeEvaR----~E~dLEraEE-Rae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE   90 (155)
T 2efr_A           16 NYHLENEVAR----LKKLLERAEE-RAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE   90 (155)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999    9999999999 99999999888   777    9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccc
Q psy1415         114 ARAEFAEKTVKKLQKEVDRLEVSG  137 (622)
Q Consensus       114 ~rae~ae~~~~~l~~~~~~le~~~  137 (622)
                      +|||||||+|.+||++||+|||..
T Consensus        91 ~RAE~AERsv~kLEk~id~lEd~L  114 (155)
T 2efr_A           91 TRAEFAERSVTKLEKSIDDLEDEL  114 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.78  E-value=2.2e-18  Score=156.57  Aligned_cols=109  Identities=36%  Similarity=0.644  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++.   +++|++++++.||+|||+|.|. +...
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~   79 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMD-IGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD-IPTE   79 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCB-TTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE-CCGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcC-CCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE-CChh
Confidence            5999999999999999999999999999998 788999999999975443   8899999999999999999997 7766


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ++....|.|.||                   |++.++++++||++.++++++.
T Consensus        80 ~l~~~~l~~~V~-------------------d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           80 KLRETTIIITVM-------------------DKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             GGGGEEEEEEEE-------------------ECCSSSCCEEEEEEEESSSSCH
T ss_pred             hcCceEEEEEEE-------------------ECCCCCCCcEEEEEEEccccCC
Confidence            666656666666                   9999899999999999998753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.78  E-value=6.9e-19  Score=166.53  Aligned_cols=122  Identities=26%  Similarity=0.503  Sum_probs=106.4

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ...|+|.+++.|  ..+.|.|.|++|++|+++|. +|.+||||++++.+++....+++|+++++++||.|||.|.|.+..
T Consensus        16 ~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (171)
T 2q3x_A           16 PAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP   93 (171)
T ss_dssp             -CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred             CCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence            457999999999  58999999999999999996 799999999999887776678899999999999999999999854


Q ss_pred             CCCCccEEEEEEE-EcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         563 DNLDSVSLELLLL-DWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       563 ~~l~~~~L~i~V~-D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      .   ...|.|+|| |++.++++++||++.|+|.++. +....+||+|...
T Consensus        94 ~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           94 Q---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             T---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             C---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            3   457999999 9999999999999999998665 5677889998765

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.78  E-value=4e-18  Score=155.36  Aligned_cols=109  Identities=18%  Similarity=0.352  Sum_probs=95.3

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-c-eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-Q-KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~-~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ....|+|++++.|.+..+.|.|.|++|++   +| .++.+||||++++.+++ . .++|+++++++||+|||+|.|. +.
T Consensus         9 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d-~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~-v~   83 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDCQKAELFVTRLEAVT---SN-HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LA   83 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEEC---CC-CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CC
T ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEEEc---CC-CCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEE-ec
Confidence            34579999999999999999999999993   56 68899999999997643 3 7899999999999999999998 77


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        84 ~~~l~~~~L~~~V~-------------------d~d~~~~dd~lG~~~i~l~~l~  119 (138)
T 1wfm_A           84 EEELPTATLTLTLR-------------------TCDRFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             TTSSTTCEEEEEEE-------------------ECCSSCTTSCSEEEEEESSSSS
T ss_pred             HHHcCCCEEEEEEE-------------------ECCCCCCCcEEEEEEEEccccc
Confidence            77766666777766                   9999999999999999999986

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.77  E-value=3.1e-18  Score=158.80  Aligned_cols=110  Identities=36%  Similarity=0.568  Sum_probs=90.4

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++.   ++||+++++++||+|||+|.|. +
T Consensus        13 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   90 (153)
T 1w15_A           13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-I   90 (153)
T ss_dssp             ---CCEEEEEEEEETTTTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-C
T ss_pred             CccccEEEEEEEEcCCCCEEEEEEEEeECCCCcC-CCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-C
Confidence            4467999999999999999999999999999998 789999999999976554   7899999999999999999997 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS  427 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~  427 (622)
                      ...++....|.|.||                   |++.++++++||++.++++.
T Consensus        91 ~~~~l~~~~l~v~V~-------------------d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           91 PCESLEEISVEFLVL-------------------DSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CSSSSTTEEEEEEEE-------------------ECCTTSCCEEEEEEEESTTC
T ss_pred             CHHHhCceEEEEEEE-------------------eCCCCCCCcEEEEEEECCCC
Confidence            666665556666666                   99988999999999999988

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.3e-18  Score=157.49  Aligned_cols=114  Identities=36%  Similarity=0.586  Sum_probs=96.8

Q ss_pred             CCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCC-CC-----CCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeecee
Q psy1415         296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIK-DT-----PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEF  368 (622)
Q Consensus       296 ~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~-d~-----~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f  368 (622)
                      .....|+|.+++.|.+..+.|.|+|++|++|+.+ +.     ..+.+||||++++.+++ .+++|+++++++||+|||+|
T Consensus         8 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             SCCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCC
T ss_pred             CCCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeE
Confidence            3456799999999999999999999999999984 31     23589999999998654 48999999999999999999


Q ss_pred             EEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         369 TFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       369 ~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .|. +...++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        88 ~f~-v~~~~l~~~~L~~~V~-------------------d~d~~~~~~~iG~~~i~l~~l~  128 (147)
T 2enp_A           88 TFE-IPFLEAQRRTLLLTVV-------------------DFDKFSRHCVIGKVSVPLCEVD  128 (147)
T ss_dssp             EEC-CCHHHHHHSEEEEEEE-------------------CCSTTCCSCCCEEEEEETTTSC
T ss_pred             EEE-eChHHhccCEEEEEEE-------------------ECCCCcCCcEEEEEEEechhcC
Confidence            997 6655555456666666                   9999899999999999999996

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.3e-18  Score=156.56  Aligned_cols=111  Identities=36%  Similarity=0.609  Sum_probs=95.6

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|++++.|.+..+.|.|.|++|++|+.++ .++ +||||++++.+++   .+++|+++++++||+|||+|.|. +
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   83 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFS-EDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS-V   83 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSS-TTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC-C
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCC-CCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE-e
Confidence            4457999999999999999999999999999998 688 9999999997654   38999999999999999999997 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCC--cceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR--DDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~--d~~iG~~~i~l~~l~  429 (622)
                      ...++....|.|.||                   |++.+++  +++||++.++|+.+.
T Consensus        84 ~~~~l~~~~L~i~V~-------------------d~d~~~~~~~~~iG~~~i~l~~~~  122 (142)
T 2dmg_A           84 SLPEVQRRTLDVAVK-------------------NSGGFLSKDKGLLGKVLVALASEE  122 (142)
T ss_dssp             CHHHHHHCEEEEEEE-------------------ECCCSSCCSCCCCEEEEEECCCST
T ss_pred             cHHHhCcCEEEEEEE-------------------ECCCccccCCcEEEEEEEeccccc
Confidence            665555556666666                   8887763  579999999999986

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.1e-19  Score=166.38  Aligned_cols=125  Identities=29%  Similarity=0.517  Sum_probs=104.0

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE---------eeEeeeeeccCCCCCeeec
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR---------VAKKKTHVKKRTLNPVYNE  554 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~---------~~~~kT~~~~~tlnP~wne  554 (622)
                      ...|+|.+++.|.  .+.|+|.|++|++|+++|..|.+||||++++.+....         ..+++|+++++++||.|||
T Consensus         4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T 1rh8_A            4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence            4589999999997  7899999999999999999999999999999543211         1357899999999999999


Q ss_pred             EEEEE-ecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         555 SFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       555 ~f~f~-v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      .|.|. +...++....|.|+|||++.++++++||++.|+|.++. +....+||+|...
T Consensus        82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  139 (142)
T 1rh8_A           82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence            99997 65444445679999999999999999999999997654 3556678877654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.77  E-value=8.4e-18  Score=158.18  Aligned_cols=112  Identities=32%  Similarity=0.550  Sum_probs=98.3

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++   .+++|+++++++||+|||+|.|. +
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   97 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMD-ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-I   97 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-C
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCcc-CCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-c
Confidence            4567999999999999999999999999999998 78999999999997643   48999999999999999999997 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...+++...|.|.||                   |++.++++++||++.+++.++.
T Consensus        98 ~~~~l~~~~L~i~V~-------------------d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A           98 KHSDLAKKSLDISVW-------------------DYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             CGGGGGGCEEEEEEE-------------------ECCSSSCCEEEEEEEEETTCCH
T ss_pred             chHhcCCCEEEEEEE-------------------ECCCCCCCcEEEeEEEecccCC
Confidence            666666666666666                   9999899999999999999863

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=7.2e-19  Score=161.98  Aligned_cols=126  Identities=28%  Similarity=0.457  Sum_probs=105.6

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCC-CCC------CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecE
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKM-DVT------GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES  555 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~-d~~------g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~  555 (622)
                      ....|+|.+++.|.+..+.|+|.|++|++|+.. +.+      |.+||||++++.+++.  .+++|+++++++||.|||.
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~   86 (147)
T 2enp_A            9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEER   86 (147)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCBC
T ss_pred             CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC--cceEeecccCCCCCeEeee
Confidence            356899999999999999999999999999984 443      5899999999975433  3679999999999999999


Q ss_pred             EEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhhcC
Q psy1415         556 FVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVCNS  610 (622)
Q Consensus       556 f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~  610 (622)
                      |.|.+...++....|.|+|||++.++++++||++.|+|.++.. .....|+.|...
T Consensus        87 f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           87 YTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             CEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999875544455799999999999999999999999986543 445678877754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=3.1e-18  Score=156.64  Aligned_cols=110  Identities=35%  Similarity=0.637  Sum_probs=94.7

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC------------ceeEeeeecCCCCCeee
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK------------QKVKTRVLRKTRNPIYN  365 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~------------~~~kT~vi~~t~nP~W~  365 (622)
                      ...|+|.+++.|.  .+.|.|.|++|++|+.+| .+|.+||||++++.++.            .+++|+++++++||+||
T Consensus         4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d-~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn   80 (142)
T 1rh8_A            4 PITGEIQLQINYD--LGNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN   80 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCS-SSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred             CcceEEEEEEEEc--CCEEEEEEEEecCCCCCC-CCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCC
Confidence            4579999999998  789999999999999999 78999999999996543            26899999999999999


Q ss_pred             ceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       366 e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |+|.|..+..+++....|.|.||                   |++.++++++||++.++|.++.
T Consensus        81 e~f~f~~v~~~~l~~~~l~i~V~-------------------d~d~~~~~~~lG~~~i~l~~l~  125 (142)
T 1rh8_A           81 QTVIYKSISMEQLMKKTLEVTVW-------------------DYDRFSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             EEEEECSCCHHHHTTCEEEEEEE-------------------EECSSSCEEEEEEEEEETTSCG
T ss_pred             CEEEECCcCHHHccCCEEEEEEE-------------------ECCCCCCCceEEEEEEeccccc
Confidence            99999645655555556666666                   9999899999999999999986

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=1.2e-17  Score=154.93  Aligned_cols=110  Identities=25%  Similarity=0.504  Sum_probs=92.5

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEccc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ....|++.+++.|.+..+.|.|.|++|++|+.++  ++.+||||++++.++.   .+++|+++++++||+|||+|.|. +
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d--~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   86 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP-V   86 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS--SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE-C
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC--CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe-c
Confidence            4456999999999999999999999999999998  5899999999997654   38999999999999999999997 5


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCC-cceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR-DDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~-d~~iG~~~i~l~~l~  429 (622)
                      ...++.. .|.|.||                   |++.+++ +++||++.++|.++.
T Consensus        87 ~~~~~~~-~L~i~V~-------------------d~d~~~~~d~~lG~~~i~l~~l~  123 (153)
T 3fbk_A           87 QEEDDQK-RLLVTVW-------------------NRASQSRQSGLIGCMSFGVKSLL  123 (153)
T ss_dssp             CGGGTTS-EEEEEEE-------------------ECCSSGGGCEEEEEEEEEHHHHT
T ss_pred             ccHHhCC-EEEEEEE-------------------eCCCCCCCCcEEEEEEEEHHHhc
Confidence            5455433 3555555                   9888776 899999999999986

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.73  E-value=3e-17  Score=148.73  Aligned_cols=106  Identities=30%  Similarity=0.545  Sum_probs=88.4

Q ss_pred             EEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcccCC
Q psy1415         303 IFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPHQLK  379 (622)
Q Consensus       303 i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~  379 (622)
                      +-+.+.|....+.|.|.|++|++|+. + .++.+||||++++.+++   .++||+++++++||+|||+|.|..+...++.
T Consensus         9 ~~~~~~~~~~~~~L~V~V~~a~~L~~-~-~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~   86 (134)
T 2b3r_A            9 GAVKLSVSYRNGTLFIMVMHIKDLVT-E-DGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLR   86 (134)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCCC-T-TSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHT
T ss_pred             EEEEEEEeecCCEEEEEEEEeeCCCC-C-CCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhC
Confidence            34555566678999999999999997 5 68899999999997753   3899999999999999999999635555555


Q ss_pred             CcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         380 GSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       380 ~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...|.|.||                   |++.++++++||++.++|+++.
T Consensus        87 ~~~L~~~V~-------------------d~d~~~~~~~lG~~~i~l~~l~  117 (134)
T 2b3r_A           87 QRELQLSVL-------------------SAESLRENFFLGGITLPLKDFN  117 (134)
T ss_dssp             TCEEEEEEE-------------------ECCSSSCCEEEEEEEEEGGGSC
T ss_pred             cCEEEEEEE-------------------ECCCCCCCcEEEEEEEEhhhcc
Confidence            556666666                   9999999999999999999997

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=1.2e-16  Score=147.48  Aligned_cols=110  Identities=31%  Similarity=0.615  Sum_probs=91.0

Q ss_pred             CCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcc
Q psy1415         296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTG  372 (622)
Q Consensus       296 ~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~  372 (622)
                      .....|+|.++++|  ..+.|.|.|++|++|+.++ .++.+||||++++.+++   .++||+++++++||+|||+|.|. 
T Consensus        15 ~~~~~G~l~~~l~~--~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-   90 (149)
T 1a25_A           15 SMERRGRIYIQAHI--DREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-   90 (149)
T ss_dssp             --CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCS-TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-
T ss_pred             CCCcceEEEEEEEe--cCCEEEEEEEEeeCCCCCC-CCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEE-
Confidence            34457999999999  4689999999999999998 78999999999997643   38999999999999999999997 


Q ss_pred             cCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         373 ITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       373 ~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +...++ ...|.                   |+|||++.++++++||++.++|.++.
T Consensus        91 v~~~~~-~~~L~-------------------i~V~d~d~~~~~~~iG~~~i~l~~l~  127 (149)
T 1a25_A           91 LKESDK-DRRLS-------------------VEIWDWDLTSRNDFMGSLSFGISELQ  127 (149)
T ss_dssp             CCSGGG-GCEEE-------------------EEEEECCSSSCCEEEEEEEEEHHHHT
T ss_pred             eccccC-CCEEE-------------------EEEEECCCCCCCCEEEEEEEEHHHhC
Confidence            443322 12344                   44559999999999999999999987

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.70  E-value=1.2e-16  Score=150.95  Aligned_cols=107  Identities=32%  Similarity=0.547  Sum_probs=89.7

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ...|+|.+++.|  ..+.|.|.|++|++|+.+|..++.+||||++++.+++.   ++||+++++++||+|||+|.|. +.
T Consensus        16 ~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~   92 (171)
T 2q3x_A           16 PAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD-ES   92 (171)
T ss_dssp             -CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECS-SC
T ss_pred             CCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEE-ec
Confidence            456999999999  68999999999999999982268999999999976553   8999999999999999999997 43


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEE-eccCCCCcceeeEEEEeCCccc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVF-SFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~-d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..   .                   ..|.|+|| |++.++++++||++.++|+++.
T Consensus        93 ~~---~-------------------~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~  126 (171)
T 2q3x_A           93 PQ---G-------------------KVLQVIVWGDYGRMDHKCFMGVAQILLEELD  126 (171)
T ss_dssp             CT---T-------------------EEEEEEEEEECSTTCSSEEEEEEEECGGGSC
T ss_pred             CC---C-------------------CEEEEEEEEcCCCCCCCCEEEEEEEEHHHcc
Confidence            22   1                   34666777 8888899999999999999987

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.69  E-value=2.6e-17  Score=148.77  Aligned_cols=111  Identities=23%  Similarity=0.280  Sum_probs=96.0

Q ss_pred             eccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEE
Q psy1415         492 SLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLE  571 (622)
Q Consensus       492 ~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~  571 (622)
                      ++.|.+..+.|+|.|++|++|++++..|.+||||++++  .+.   +++|+++++++||.|||.|.|.+...   ...|.
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~kT~~~~~t~nP~wne~f~f~~~~~---~~~l~   76 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL--GND---RLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLE   76 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE--TTE---EEECCCCSSCSSCCCCEEEEEEESCT---TCEEE
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEE--CCE---EEEeeeecCCCCCccccEEEEEecCC---CCEEE
Confidence            34578889999999999999999999999999999998  433   56999999999999999999999743   24699


Q ss_pred             EEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415         572 LLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP  611 (622)
Q Consensus       572 i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p  611 (622)
                      |+|||++.++++++||++.|+|.++. .+..+||+|....
T Consensus        77 i~V~d~d~~~~~~~lG~~~i~l~~l~-~~~~~w~~L~~~~  115 (133)
T 2ep6_A           77 VTVFDEDGDKPPDFLGKVAIPLLSIR-DGQPNCYVLKNKD  115 (133)
T ss_dssp             EEEEEEETTEEEEECCBCEEEGGGCC-SSCCEECCCBCSC
T ss_pred             EEEEECCCCCCCCeeEEEEEEHHHcc-CCCceEEEeecCC
Confidence            99999999999999999999997654 3557999998643

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=9.4e-17  Score=146.35  Aligned_cols=113  Identities=27%  Similarity=0.401  Sum_probs=95.0

Q ss_pred             CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC-CccEEEEEEEE
Q psy1415         498 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLD  576 (622)
Q Consensus       498 ~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l-~~~~L~i~V~D  576 (622)
                      ..|.|+|.|++|++|+.++. |.+||||++++.  +.   +++|+++++++||.|||.|.|.+....+ ....|.|+|||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~--~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d   78 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK--DE---KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKD   78 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS--SC---EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC--CE---eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEE
Confidence            46789999999999999998 999999999983  22   6799999999999999999999976533 34579999999


Q ss_pred             cCCCCCCceeEEEEECCCCCC-Ccccchhhh---hhcCCCCcee
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSS-GTALTHWTD---VCNSPRRQIA  616 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~---L~~~p~~~i~  616 (622)
                      ++.++++++||++.|+|.++. +....+|++   |.+..++...
T Consensus        79 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~  122 (140)
T 2dmh_A           79 FETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTG  122 (140)
T ss_dssp             TTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEE
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCC
Confidence            999999999999999997654 456688998   7776654443

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.67  E-value=5.1e-16  Score=143.75  Aligned_cols=95  Identities=38%  Similarity=0.584  Sum_probs=73.0

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      +..+.|.|+|++|++|+.++ .++.+||||++++.+..    ..++|+++++++||+|||+|.|. +...   ...|.|.
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~   91 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKD-ILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFE   91 (153)
T ss_dssp             TTCEEEEEEEEEEESCC--------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEE
Confidence            34678999999999999998 78899999999996433    38899999999999999999997 3322   2345555


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   |++.++++++||++.++|.++.
T Consensus        92 V~-------------------d~d~~~~d~~iG~~~i~l~~l~  115 (153)
T 3b7y_A           92 VF-------------------DENRLTRDDFLGQVDVPLYPLP  115 (153)
T ss_dssp             EE-------------------ECCSSSCCEEEEEEEEECCSCC
T ss_pred             EE-------------------ECCCCcCCCeeEEEEEEHHHcc
Confidence            55                   9999999999999999999987

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=139.21  Aligned_cols=94  Identities=24%  Similarity=0.409  Sum_probs=78.8

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccC-CCcEEEEEEEee
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQL-KGSTLHFVVFSF  390 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-~~~~L~~~V~d~  390 (622)
                      ..+.|.|.|++|++|+.++ . +.+||||++++  ++++++|+++++++||+|||+|.|. +...++ ....|.      
T Consensus         5 ~~g~L~v~v~~a~~L~~~~-~-g~~dpyv~v~~--~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~------   73 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTK-F-GKPDPIVSVIF--KDEKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLG------   73 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCS-S-SCCCEEEEEEC--SSCEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEE------
T ss_pred             CCcEEEEEEEEeeCCCCCC-C-CCCCeEEEEEE--CCEeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEE------
Confidence            4578999999999999998 5 99999999999  6678999999999999999999997 433221 233444      


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |+|||++..+++++||++.+++.++.
T Consensus        74 -------------i~V~d~d~~~~~~~lG~~~i~l~~l~   99 (140)
T 2dmh_A           74 -------------IIVKDFETIGQNKLIGTATVALKDLT   99 (140)
T ss_dssp             -------------EEEEETTCSSSCCCCEEEEEEGGGTC
T ss_pred             -------------EEEEECCCCCCCceEEEEEEEHHHhc
Confidence                         44559999999999999999999986

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.67  E-value=1.3e-16  Score=144.20  Aligned_cols=97  Identities=31%  Similarity=0.421  Sum_probs=81.8

Q ss_pred             EEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         307 IKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       307 l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      +.|.+..+.|.|.|++|++|+.++ .++.+||||++++  +++.++|+++++++||+|||+|.|.+...    ...|.|.
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~--~~~~~kT~~~~~t~nP~wne~f~f~~~~~----~~~l~i~   78 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAAD-FSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKDI----HDVLEVT   78 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSS-SSSCCCEEEEEEE--TTEEEECCCCSSCSSCCCCEEEEEEESCT----TCEEEEE
T ss_pred             ccccCCceEEEEEEEeeECCCCCC-CCCCcCeEEEEEE--CCEEEEeeeecCCCCCccccEEEEEecCC----CCEEEEE
Confidence            345667889999999999999998 7899999999999  66789999999999999999999973221    2345555


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   |++..+++++||++.+++.++.
T Consensus        79 V~-------------------d~d~~~~~~~lG~~~i~l~~l~  102 (133)
T 2ep6_A           79 VF-------------------DEDGDKPPDFLGKVAIPLLSIR  102 (133)
T ss_dssp             EE-------------------EEETTEEEEECCBCEEEGGGCC
T ss_pred             EE-------------------ECCCCCCCCeeEEEEEEHHHcc
Confidence            54                   9998889999999999999986

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=146.63  Aligned_cols=106  Identities=22%  Similarity=0.290  Sum_probs=88.0

Q ss_pred             cCCccEEEEEEEeecCCCCCCC----------CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         496 QPAANRFTIVVLKARNLPKMDV----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~----------~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      ....|.|+|.|++|++|+++|.          .|.+||||++.+  ++..  +.||+++++|+||.|||.|.|.+..   
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l--~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~---   97 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR--VGQTSTKQKTNKPTYNEEFCANVTD---   97 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE--TTEE--EEECCCCSSCSSCEEEEEEEEEEEE---
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE--CCEe--eEEeeecCCCCCCccCcEEEEEcCC---
Confidence            3456899999999999999883          367999999998  4433  4689999999999999999999863   


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCC-----Ccccchhhhhhc
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-----GTALTHWTDVCN  609 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-----~~~~~~W~~L~~  609 (622)
                       ...|.|+|||++.+++|++||++.|+|.++.     +...+.||+|..
T Consensus        98 -~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           98 -GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             -ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS
T ss_pred             -CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC
Confidence             2369999999999999999999999997543     245678998853

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.67  E-value=3.8e-16  Score=144.64  Aligned_cols=112  Identities=23%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCC-eEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~-~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      .+..+.|+|.|++|++|+.++..|.+||||++++.+.+ ....+++|+++++++||.|||.|.|.+...   ...|.|+|
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V   92 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEV   92 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEE
Confidence            34568899999999999999999999999999997532 334578999999999999999999998753   34699999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCCCccc-------chhhhhhcC
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSSGTAL-------THWTDVCNS  610 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~-------~~W~~L~~~  610 (622)
                      ||++.++++++||++.|+|.++.....       .+||.|...
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  135 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR  135 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred             EECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence            999999999999999999986554322       489998654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.67  E-value=7.5e-16  Score=146.24  Aligned_cols=95  Identities=37%  Similarity=0.574  Sum_probs=73.2

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      ...+.|.|.|++|++|+.++ .++.+||||++++.+..    .+++|+++++++||+|||+|.|. +...   ...|.|.
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~   79 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKD-ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFE   79 (176)
T ss_dssp             TTCEEEEEEEEEEESCC----CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcC-CCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcCC---CCEEEEE
Confidence            45788999999999999998 78999999999996433    37899999999999999999997 3322   2345555


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   |++.++++++||++.++|..+.
T Consensus        80 V~-------------------d~d~~~~d~~lG~~~i~l~~l~  103 (176)
T 3m7f_B           80 VF-------------------DENRLTRDDFLGQVDVPLYPLP  103 (176)
T ss_dssp             EE-------------------ECC----CEEEEEEEEESCSCC
T ss_pred             EE-------------------ECCCCCCCcEEEEEEEEHHHcc
Confidence            55                   9999999999999999999997

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.67  E-value=1.1e-15  Score=140.77  Aligned_cols=92  Identities=28%  Similarity=0.496  Sum_probs=78.0

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      ..+.|.|+|++|++|+.+| .++.+||||++++  +++.++|+++++++||.|||+|.|.+....    ..|.|.||   
T Consensus        15 ~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~---   84 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKD-KTGSSDPYVTVQV--GKTKKRTKTIYGNLNPVWEENFHFECHNSS----DRIKVRVL---   84 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCS-TTSCCCEEEEEEE--TTEEEECCCCCSCSSCEEEEEEEEEECSTT----CEEEEEEE---
T ss_pred             cccEEEEEEEeeeCCCCCC-CCCCcCeEEEEEE--CCEEEECCccCCCCCCCcccEEEEEecCCC----CEEEEEEE---
Confidence            3689999999999999998 7899999999999  778999999999999999999999732221    34555555   


Q ss_pred             cCCCCCCCcceEEEEEeccCC-----------CCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRY-----------SRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~-----------~~d~~iG~~~i~l~~l~  429 (622)
                                      |++..           +++++||++.++++++.
T Consensus        85 ----------------d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~  117 (148)
T 3kwu_A           85 ----------------DEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS  117 (148)
T ss_dssp             ----------------ECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred             ----------------ECCCCccccccccccCCCCccEEEEEEEHHHCc
Confidence                            87775           78999999999999984

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.66  E-value=2e-16  Score=143.57  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=85.1

Q ss_pred             ccEEEEEEEeecCCCCCCCCCC-----------CCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCc
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGL-----------ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS  567 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~-----------sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~  567 (622)
                      .|.|+|.|++|++|+++|..|.           +||||++.+  ++..  ..+|+++++++||.|||.|.|.+...    
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l--~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~----   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSR--IGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEE--EEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE--CCeE--eeeeeEECCCcCCccCCEEEEEecCC----
Confidence            5789999999999999886544           999999998  4432  46899999999999999999998743    


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEECCCCCCC---cccchhhhhhc
Q psy1415         568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSSG---TALTHWTDVCN  609 (622)
Q Consensus       568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~---~~~~~W~~L~~  609 (622)
                      ..|.|+|||++.+++|++||++.|+|.++..   ...+.|++|..
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~  121 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC
Confidence            4699999999999999999999999975433   23367887753

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.66  E-value=5.5e-16  Score=147.14  Aligned_cols=112  Identities=22%  Similarity=0.331  Sum_probs=87.2

Q ss_pred             cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC-CeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~-~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      ....|.|+|.|++|++|+.++..|.+||||++++.+. +....+++|+++++++||.|||.|.|.+...   ...|.|+|
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V   80 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEV   80 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEE
Confidence            3457899999999999999999999999999999753 3344578999999999999999999999743   24699999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCCCcccc-------hhhhhhcC
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSSGTALT-------HWTDVCNS  610 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~~-------~W~~L~~~  610 (622)
                      ||++.++++++||++.|+|..+......       +||.|...
T Consensus        81 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  123 (176)
T 3m7f_B           81 FDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR  123 (176)
T ss_dssp             EECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCS
T ss_pred             EECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc
Confidence            9999999999999999999876543322       79999764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.65  E-value=5.7e-16  Score=142.59  Aligned_cols=103  Identities=27%  Similarity=0.441  Sum_probs=90.8

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .|.|+|.|++|++|+++|..|.+||||++++  ++   .+++|+++++++||.|||.|.|.+....   ..|.|+|||++
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~l~~~v~d~d   87 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV--GK---TKKRTKTIYGNLNPVWEENFHFECHNSS---DRIKVRVLDED   87 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE--TT---EEEECCCCCSCSSCEEEEEEEEEECSTT---CEEEEEEEECC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE--CC---EEEECCccCCCCCCCcccEEEEEecCCC---CEEEEEEEECC
Confidence            6899999999999999999999999999998  33   2679999999999999999999997543   35999999999


Q ss_pred             CC-----------CCCceeEEEEECCCCCCCcccchhhhhhcC
Q psy1415         579 RV-----------TKNEVIGRLDLGGDKSSGTALTHWTDVCNS  610 (622)
Q Consensus       579 ~~-----------~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~  610 (622)
                      ..           +++++||++.|+|..+ .....+||+|...
T Consensus        88 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l-~~~~~~w~~L~~~  129 (148)
T 3kwu_A           88 DDIKSRVKQRFKRESDDFLGQTIIEVRTL-SGEMDVWYNLDKR  129 (148)
T ss_dssp             CSHHHHHHTTTSSCSSEEEEEEEEEGGGC-CSEEEEEEECBCS
T ss_pred             CCccccccccccCCCCccEEEEEEEHHHC-cCCCCEEEEcccC
Confidence            86           7899999999999766 5677899999854

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.65  E-value=1.2e-16  Score=142.96  Aligned_cols=108  Identities=27%  Similarity=0.420  Sum_probs=89.3

Q ss_pred             ccEEEEEEEeecCCCCC---CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~---d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      .+.|+|.|++|++|+++   +..|.+||||++++.+.+  ..+++|+++++++||.|||.|.|.+....  ...|.|+||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEEecCCC--CCEEEEEEE
Confidence            47899999999999985   667999999999984422  24779999999999999999999996443  346999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      |++.++ +++||++.|+|..+. +....+|++|....
T Consensus        78 d~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  113 (126)
T 1rlw_A           78 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVT  113 (126)
T ss_dssp             ECCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEETTTE
T ss_pred             ECCCCC-CceeEEEEEEHHHccCCCcEEEEEEcCCCc
Confidence            999885 999999999997654 45667899987643

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.63  E-value=2.7e-16  Score=142.59  Aligned_cols=104  Identities=23%  Similarity=0.373  Sum_probs=89.5

Q ss_pred             CCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       497 ~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      ...+.|+|.|++|++|+.++..|.+||||++++.+  .   +++|++++ +++||.|||.|.|.+..   ....|.|+||
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~---~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~   78 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--Q---DQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIF   78 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--C---EEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEEC
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--c---cceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEE
Confidence            34689999999999999999999999999999833  2   46899998 89999999999999985   2446999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCC--Ccccchhhhhh
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVC  608 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~  608 (622)
                      |++.+++|++||++.|+|.++.  +....+||+|.
T Consensus        79 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  113 (136)
T 1wfj_A           79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             ECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence            9999999999999999997652  34467899987

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.63  E-value=9.7e-16  Score=142.14  Aligned_cols=94  Identities=27%  Similarity=0.334  Sum_probs=76.8

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCC---------CCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCC
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTP---------SGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKG  380 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~---------~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~  380 (622)
                      ...+.|.|+|++|++|+++|..         .+.+||||+|++  ++. +.||+++++|+||+|||+|.|. +..    .
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l--~~~~~~kT~v~~ktlnP~WNE~F~f~-v~~----~   98 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTYNEEFCAN-VTD----G   98 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EEE----E
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE--CCEeeEEeeecCCCCCCccCcEEEEE-cCC----C
Confidence            3467899999999999988711         267999999999  665 6899999999999999999997 321    1


Q ss_pred             cEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         381 STLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       381 ~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      ..|.|.||                   |++.++++++||.+.+++.++..
T Consensus        99 ~~L~~~V~-------------------D~d~~~~dd~iG~~~i~l~~l~~  129 (157)
T 2fk9_A           99 GHLELAVF-------------------HETPLGYDHFVANCTLQFQELLR  129 (157)
T ss_dssp             CEEEEEEE-------------------ECCSSSSCEEEEEEEEEHHHHHH
T ss_pred             CEEEEEEE-------------------ECCCCCCCCEEEEEEEEHHHhhc
Confidence            24555555                   99999999999999999999873

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.61  E-value=2e-15  Score=136.97  Aligned_cols=91  Identities=20%  Similarity=0.306  Sum_probs=74.8

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCC-----------CCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCC
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGS-----------SDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKG  380 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~-----------sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~  380 (622)
                      .+.|.|+|++|++|+++| .++.           +||||++++  ++. ..+|+++++++||+|||+|.|. +...    
T Consensus         5 ~g~L~v~v~~a~~L~~~d-~~~~~~~g~~~~~~~~DPyv~v~l--~~~~~~~T~~~~~t~nP~WnE~f~f~-v~~~----   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTA-WSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTD-VCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCH-HHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EEEE----
T ss_pred             ceEEEEEEEeCcCCCCcc-cccccccccccCCcCcCcEEEEEE--CCeEeeeeeEECCCcCCccCCEEEEE-ecCC----
Confidence            478999999999999887 4443           999999999  555 6899999999999999999996 3211    


Q ss_pred             cEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         381 STLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       381 ~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      ..|.|.|                   ||++.+++|++||++.++++++..
T Consensus        77 ~~L~~~V-------------------~d~d~~~~dd~iG~~~i~l~~l~~  107 (136)
T 1gmi_A           77 RKIELAV-------------------FHDAPIGYDDFVANCTIQFEELLQ  107 (136)
T ss_dssp             CEEEEEE-------------------EECCSSSSCEEEEEEEEEHHHHTS
T ss_pred             CEEEEEE-------------------EeCCCCCCCCEEEEEEEEHHHhcc
Confidence            3444555                   499999999999999999999873

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.60  E-value=5.3e-15  Score=133.34  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=75.1

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      ..|.|+|++|++|+.+| .+|.+||||++++.+++++++|+++++++||+|||+|.|. +...    ..|.|        
T Consensus         5 ~~L~V~v~~a~~L~~~d-~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~--------   70 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKD-FFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITI--------   70 (132)
T ss_dssp             EEEEEEEEEEESCCCCS-TTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEE--------
T ss_pred             EEEEEEEEEeECCCCCC-CCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEE-eCCC----CEEEE--------
Confidence            46899999999999999 7899999999999544469999999999999999999996 3211    12444        


Q ss_pred             CCCCCCcceEEEEEeccCCCC---cceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSR---DDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~---d~~iG~~~i~l~~l~  429 (622)
                                 +|||++..++   +++||++.++++.+.
T Consensus        71 -----------~v~d~d~~~~~~~d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           71 -----------SVWNHKKIHKKQGAGFLGCVRLLSNAIS   98 (132)
T ss_dssp             -----------EEEEGGGTTSSTTTTEEEEEEECHHHHH
T ss_pred             -----------EEEECCCCCCCCCCCceEEEEEeHHHhh
Confidence                       4558888776   799999999998884

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.60  E-value=3e-15  Score=135.64  Aligned_cols=92  Identities=28%  Similarity=0.387  Sum_probs=77.3

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      ..+.|.|+|++|++|+..+ .++.+||||++++  +++.++|++++ +++||+|||+|.|. +..   ....|.      
T Consensus         8 ~~~~L~v~v~~a~~L~~~d-~~g~~dpyv~v~~--~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~------   74 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDAD-FLNNMDPYVQLTC--RTQDQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELK------   74 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCC-SSCSSCCCEEEES--SSCEEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEE------
T ss_pred             CcEEEEEEEEeccCCCCcc-cCCCcCceEEEEE--CCccceeEeccCCCCCCccCcEEEEE-ECC---CCCEEE------
Confidence            3567899999999999998 7899999999999  56688999998 89999999999997 321   123444      


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                   |+|||++.+++|++||++.++|.++.
T Consensus        75 -------------~~V~d~~~~~~d~~lG~~~i~l~~l~  100 (136)
T 1wfj_A           75 -------------AKIFDKDVGTEDDAVGEATIPLEPVF  100 (136)
T ss_dssp             -------------EEECCSSSCTTTCCSEEEEEESHHHH
T ss_pred             -------------EEEEECCCCCCCceEEEEEEEHHHhc
Confidence                         44559999999999999999999985

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.60  E-value=1.2e-15  Score=137.54  Aligned_cols=105  Identities=25%  Similarity=0.372  Sum_probs=87.4

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      ...|+|.|++|++|+++|..|.+||||++++.+.+   .+++|+++++++||.|||.|.|.+...+    .|.|+|||++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~----~l~~~v~d~d   76 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG---QCHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVWNHK   76 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC---CEEECCCCSSCSSCEEEEEEEEEEETTC----CEEEEEEEGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC---ceEECCccCCCCCCCccCEEEEEeCCCC----EEEEEEEECC
Confidence            35799999999999999999999999999984322   3679999999999999999999997542    3999999999


Q ss_pred             CCCC---CceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415         579 RVTK---NEVIGRLDLGGDKSS--GTALTHWTDVCNS  610 (622)
Q Consensus       579 ~~~~---d~~LG~v~i~L~~~~--~~~~~~W~~L~~~  610 (622)
                      .+++   |++||++.|++..+.  .....+|++|...
T Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~  113 (132)
T 3pyc_A           77 KIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL  113 (132)
T ss_dssp             GTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS
T ss_pred             CCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeec
Confidence            9876   899999999986442  2344678888765

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.59  E-value=8.2e-15  Score=130.81  Aligned_cols=105  Identities=23%  Similarity=0.452  Sum_probs=80.6

Q ss_pred             CCEEEEEEEEeeCCCCC---CCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         313 ENVLVVTVIKCRDLFIK---DTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~---d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      .+.|.|+|++|++|+.+   + .++.+||||++++.+.+ .+++|+++++++||+|||+|.|. +...+  ...|.|.||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~--~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHH-HHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccc-cCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEE-ecCCC--CCEEEEEEE
Confidence            47899999999999984   5 56899999999995432 58999999999999999999997 43222  334555555


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeec
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFD  443 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~  443 (622)
                                         |++.. ++++||++.++|.++.  .+..+..|+.+.
T Consensus        78 -------------------d~d~~-~~~~iG~~~i~l~~l~--~~~~~~~~~~L~  110 (126)
T 1rlw_A           78 -------------------DANYV-MDETLGTATFTVSSMK--VGEKKEVPFIFN  110 (126)
T ss_dssp             -------------------ECCSS-CCEEEEEEEEEGGGSC--TTCEEEEEEEET
T ss_pred             -------------------ECCCC-CCceeEEEEEEHHHcc--CCCcEEEEEEcC
Confidence                               88877 4899999999999986  233344455553

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.57  E-value=9.2e-15  Score=138.22  Aligned_cols=91  Identities=29%  Similarity=0.361  Sum_probs=75.0

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      ..+.|.|+|++|++|+..+ ..+.+||||+|++  +++++||+++++++||+|||+|.|. +..    ...|.|.||   
T Consensus        34 ~~~~L~V~V~~A~~L~~~~-~~~~sDPYv~v~~--~~~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~---  102 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKK-NWFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVW---  102 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC---CCCCCEEEEEEE--TTEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEE---
T ss_pred             CceEEEEEEEEeECCCCcc-cCCCCCeEEEEEE--CCEEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEE---
Confidence            4577999999999999443 2445999999999  6689999999999999999999997 432    334555555   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      |++.++++++||++.++|.++.
T Consensus       103 ----------------D~d~~~~dd~lG~~~i~l~~l~  124 (173)
T 2nq3_A          103 ----------------SHQTLKSDVLLGTAALDIYETL  124 (173)
T ss_dssp             ----------------ECCSSSCCEEEEEEEEEHHHHH
T ss_pred             ----------------ECCCCCCCceEEEEEEEHHHhc
Confidence                            9999999999999999999986

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.54  E-value=2.5e-14  Score=135.22  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         498 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       498 ~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      ..+.|+|.|++|++|+..+..+.+||||++++  ++   .++||+++++++||.|||.|.|.+..    ...|.|+|||+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~--~~---~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~  104 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTV--DG---QSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSH  104 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEE--TT---EEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEEC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEE--CC---EEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEEC
Confidence            45789999999999994444555999999998  44   37799999999999999999999852    44699999999


Q ss_pred             CCCCCCceeEEEEECCCCCCC------cccchhhhhhcC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSSG------TALTHWTDVCNS  610 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~~------~~~~~W~~L~~~  610 (622)
                      +.+++|++||++.|+|.++..      .....|++|...
T Consensus       105 d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A          105 QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             CSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             CCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            999999999999999974331      122569888775

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.47  E-value=6.7e-14  Score=126.09  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      .+.|.|+|++|++|+.   .|.+||||++.  ..     ..+|.+++ +++||.|||.|.|.+...   ...|.|+|||+
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~-----~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~   70 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQ-----NVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNK   70 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEE--ET-----TEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEE--ec-----CEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEEC
Confidence            5789999999998852   68899999998  22     22444444 699999999999999743   23599999999


Q ss_pred             CCCCCCceeEEEEECCCCCCC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~~  598 (622)
                      + +++|++||++.|+|.++..
T Consensus        71 d-~~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           71 G-LIWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             C-SSCEEEEEEEEEEGGGSCB
T ss_pred             C-CCCCCeEEEEEEEHHHhhh
Confidence            9 8899999999999976543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.44  E-value=2.4e-13  Score=121.54  Aligned_cols=88  Identities=20%  Similarity=0.351  Sum_probs=75.3

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      -.|+|.|.+|++|+      +++|||+++.+  .+.++||++++ +++||+|||.|.|. +......+..|.+.|+    
T Consensus        21 msL~V~l~~a~~Lp------g~~Dp~akv~F--Rg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~----   87 (144)
T 3l9b_A           21 MALIVHLKTVSELR------GRADRIAKVTF--RGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIF----   87 (144)
T ss_dssp             EEEEEEEEEEESCC------SCEEEEEEEEE--TTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEE----
T ss_pred             EEEEEEEEEecCCC------CCCCCeEEEEE--eccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEE----
Confidence            35889999999997      36899999999  67799999998 69999999999997 4445455556666666    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |+++++++.+||++.++|+++.
T Consensus        88 ---------------d~~~v~~nrlIG~~~i~Lq~lv  109 (144)
T 3l9b_A           88 ---------------NYSKVFSNKLIGTFRMVLQKVV  109 (144)
T ss_dssp             ---------------EECTTSCCEEEEEEEEESHHHH
T ss_pred             ---------------ECccccCCCEEEEEEEEhHHhc
Confidence                           9999999999999999999997

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.41  E-value=3.8e-13  Score=148.86  Aligned_cols=113  Identities=22%  Similarity=0.323  Sum_probs=95.3

Q ss_pred             CCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       497 ~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      ...+.|+|.|++|++|+++|.+|.+||||++++  ++.   +++|+++++++||.|||.|.|.+...  ....|.|+|||
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~--~~~---~~~T~~~~~t~nP~w~e~f~f~~~~~--~~~~l~~~v~d  456 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISM--GSQ---SYTTRTIQDTLNPKWNFNCQFFIKDL--YQDVLCLTLFD  456 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE--TTE---EEECCCCSSCSSCEEEEEEEEEESCT--TTCEEEEEEEE
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEE--CCe---eccCCccCCCCCCccCceEEEEecCC--CCCEEEEEEEe
Confidence            356789999999999999999999999999998  332   67999999999999999999998633  44569999999


Q ss_pred             cCCCCCCceeEEEEECCCCCCC-cc----cchhhhhhcCCCCcee
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSSG-TA----LTHWTDVCNSPRRQIA  616 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~~-~~----~~~W~~L~~~p~~~i~  616 (622)
                      +|.+++|++||++.++|..+.. ..    ...|+.|.+.+.+.|.
T Consensus       457 ~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~  501 (510)
T 3jzy_A          457 RDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVW  501 (510)
T ss_dssp             CCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEE
T ss_pred             CCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEE
Confidence            9999999999999999975442 12    6789999988887764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.40  E-value=2.9e-13  Score=154.87  Aligned_cols=126  Identities=31%  Similarity=0.556  Sum_probs=109.0

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ...+|.|.+++.+  ..+.|.|.+++|++|+++|.+|.+||||++.+.+++....+++|+++++++||.|||.|.|.+..
T Consensus       157 ~~~~g~i~~~~~~--~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~  234 (674)
T 3pfq_A          157 TERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKE  234 (674)
T ss_dssp             SCCSCEEEEEEEE--CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred             cccccccccccee--ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeeccc
Confidence            3467888888766  46889999999999999999999999999999876555567899999999999999999999876


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP  611 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p  611 (622)
                      .+.. ..|.|+|||+|..++|++||++.+++.++......+|+.|+..-
T Consensus       235 ~~~~-~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~~  282 (674)
T 3pfq_A          235 SDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE  282 (674)
T ss_dssp             TTTT-CEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBCTT
T ss_pred             CCcc-ceeeeEEeecccccccccccccccchhhhccCCcccceeecccc
Confidence            5543 45999999999999999999999999877777779999997653

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.39  E-value=5.1e-13  Score=125.35  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      .+.|+|.|++|++|+   ..|.+||||++.  ..     ..+|++++ +++||.|||.|.|.+...   ...|.|+|||+
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~-----~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~   79 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQ-----NVESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNK   79 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ET-----TEEEECCCEESSSCEEEEEEEEECCCT---TSEEEEEEEEC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ec-----ceEEEEecCCCCCCCCCCEEEEEeeCC---CCEEEEEEEEC
Confidence            568999999999884   368899999998  22     23555555 699999999999999743   23599999999


Q ss_pred             CCCCCCceeEEEEECCCCCCC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSSG  598 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~~  598 (622)
                      + +++|++||++.|+|.++..
T Consensus        80 d-~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           80 G-LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             C-SSCCEEEEEEEEEGGGSCB
T ss_pred             C-CCCCceEEEEEEEHHHhcc
Confidence            9 8899999999999986543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.37  E-value=1.3e-12  Score=143.86  Aligned_cols=99  Identities=23%  Similarity=0.284  Sum_probs=82.2

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .+.|+|.|++|++|+. |.+|.+||||++++  ++.   ++||+++++++||.|||.|.|.+.... ....|.|+|||+|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l--~~~---~~kTkvik~tlNP~Wne~f~f~~~~~~-~~~~L~~~V~D~D  465 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFF--GGQ---EFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDAD  465 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEE--TTE---EEECCCBCSCSSCBCCCCEEEEEEETT-TCCCEEEEEEECC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEE--CCE---eeeeeeecCCCCCCCCeEEEEEEecCC-CCCEEEEEEEECC
Confidence            4789999999999998 99999999999999  343   589999999999999999999864211 2345999999999


Q ss_pred             CCCCCceeEEEEECCCCCCCcccchhhhh
Q psy1415         579 RVTKNEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      .+++|++||++.++|.  .+ ....|..|
T Consensus       466 ~~~~dD~LG~~~~~L~--~g-~~~~~~~l  491 (540)
T 3nsj_A          466 YGWDDDLLGSCDRSPH--SG-FHEVTCEL  491 (540)
T ss_dssp             SSSCCEEEEEEEECCC--SE-EEEEEEEC
T ss_pred             CCCCCCEEEEEEEEee--CC-cEEEEEEc
Confidence            9999999999999986  22 24566653

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.37  E-value=1e-12  Score=147.89  Aligned_cols=115  Identities=22%  Similarity=0.397  Sum_probs=95.6

Q ss_pred             CccEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCC-CCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         498 AANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       498 ~~g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~t-lnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      ..+.|+|.|++|++|+.++.  .|.+||||++.+.+......++||++++++ +||.|||.|.|.+..+++.  .|.|.|
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~--~L~~~V  572 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLA--LVRFMV  572 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGC--EEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCC--EEEEEE
Confidence            45789999999999999884  789999999999653222347799999998 9999999999999866543  599999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCcee
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIA  616 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~  616 (622)
                      ||+|.++++++||++.|+|..+.. +. +|.+|.+.-|..+.
T Consensus       573 ~D~D~~~~dd~iG~~~ipl~~L~~-G~-r~v~L~d~~g~~~~  612 (624)
T 1djx_A          573 EDYDSSSKNDFIGQSTIPWNSLKQ-GY-RHVHLLSKNGDQHP  612 (624)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGBCC-EE-EEEEEECTTSCEEE
T ss_pred             EEcCCCCCCceeEEEEEEHHHcCC-Cc-EEEeCCCCCcCCCC
Confidence            999999999999999999975543 33 59999988777653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.37  E-value=1.9e-12  Score=116.56  Aligned_cols=86  Identities=23%  Similarity=0.366  Sum_probs=66.0

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      .+.|.|+|++|++|.    .++.+||||+++.    +..+|++++ +++||+|||+|.|. +...   ...|.|.|    
T Consensus         4 ~~~L~V~V~~A~~l~----~~g~~DPYv~v~~----~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V----   67 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDG----AQEKFNTYVTLKV----QNVKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEV----   67 (131)
T ss_dssp             CEEEEEEEEEEECSS----CGGGCEEEEEEEE----TTEEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEE----
T ss_pred             ceEEEEEEEEeECCC----CCCCcCeEEEEEe----cCEEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEE----
Confidence            468999999999884    2578999999992    334555554 79999999999997 3321   22355555    


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                                     ||++ .++|++||++.++|+++..
T Consensus        68 ---------------~D~d-~~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           68 ---------------WNKG-LIWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             ---------------EECC-SSCEEEEEEEEEEGGGSCB
T ss_pred             ---------------EECC-CCCCCeEEEEEEEHHHhhh
Confidence                           4998 8899999999999999873

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.35  E-value=5.9e-13  Score=151.04  Aligned_cols=109  Identities=27%  Similarity=0.420  Sum_probs=92.1

Q ss_pred             CCccEEEEEEEeecCCCC---CCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEE
Q psy1415         497 PAANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL  573 (622)
Q Consensus       497 ~~~g~L~V~I~~A~~L~~---~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~  573 (622)
                      +..+.|+|.|++|++|++   +|..|.+||||++++.+...  .++||+++++++||+|||.|.|.+....  ...|.|+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~--~k~kTkvik~tlNPvWNEtF~F~v~~~~--~~~L~~~   90 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEIT   90 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTT--CCEECCCCTTCSSCEEEEEEEEEECTTS--CCBCEEE
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCC--CeEecceEcCCCCCeeeeEEEEEecCCC--CCEEEEE
Confidence            346899999999999999   88889999999999843212  4779999999999999999999998543  3359999


Q ss_pred             EEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415         574 LLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS  610 (622)
Q Consensus       574 V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~  610 (622)
                      |||+|.++ |++||++.|+|.++. +....+|++|...
T Consensus        91 V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           91 LMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             EEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             EEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99999999 999999999998654 4557889999754

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.32  E-value=3.6e-12  Score=113.91  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=87.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      -|+|.|.+|.+|+     |.+|||+++.+  .+   .+++|+++. ++.||.|||.|.|++..+...+..|.|.|+|+++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~F--Rg---~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~   91 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTF--RG---QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK   91 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEE--TT---EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEE--ec---cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence            3899999999998     68899999999  43   378999998 6999999999999999877778889999999999


Q ss_pred             CCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415         580 VTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i  615 (622)
                      ++++++||++.|+|.++. +.....+..|.+...+.+
T Consensus        92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~  128 (144)
T 3l9b_A           92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII  128 (144)
T ss_dssp             TSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE
T ss_pred             ccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc
Confidence            999999999999997433 234445666766666555

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=140.33  Aligned_cols=89  Identities=26%  Similarity=0.393  Sum_probs=74.5

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      .+.|.|.|++|++|+. | .+|++||||+|++  +++.+||+++++++||+|||+|.|......                
T Consensus       393 ~~~L~V~V~~A~~L~~-D-~~g~sDPYV~v~l--~~~~~kTkvik~tlNP~Wne~f~f~~~~~~----------------  452 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-D-YTTATDAYLKVFF--GGQEFRTGVVWNNNNPRWTDKMDFENVLLS----------------  452 (540)
T ss_dssp             EEEEEEEEEEEESCCC-S-SCSCCCEEEEEEE--TTEEEECCCBCSCSSCBCCCCEEEEEEETT----------------
T ss_pred             ccEEEEEEEEccCCCc-c-cCCCcCeEEEEEE--CCEeeeeeeecCCCCCCCCeEEEEEEecCC----------------
Confidence            3679999999999998 8 7899999999999  667899999999999999999998622211                


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCC
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ  426 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~  426 (622)
                           ...+|.|+|||+|..++||+||++.++|.
T Consensus       453 -----~~~~L~~~V~D~D~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          453 -----TGGPLRVQVWDADYGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             -----TCCCEEEEEEECCSSSCCEEEEEEEECCC
T ss_pred             -----CCCEEEEEEEECCCCCCCCEEEEEEEEee
Confidence                 12345566669999999999999999987

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.30  E-value=8.1e-12  Score=138.16  Aligned_cols=94  Identities=28%  Similarity=0.450  Sum_probs=79.0

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      ...+.|.|.|++|++|+.+| .+|.+||||++++  ++.+++|+++++++||+|+|+|.|.+ .  ......|.|.|   
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d-~~~~sdpyv~v~~--~~~~~~T~~~~~t~nP~w~e~f~f~~-~--~~~~~~l~~~v---  454 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACK-PNGKSNPYCEISM--GSQSYTTRTIQDTLNPKWNFNCQFFI-K--DLYQDVLCLTL---  454 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCS-TTSCCCEEEEEEE--TTEEEECCCCSSCSSCEEEEEEEEEE-S--CTTTCEEEEEE---
T ss_pred             CCCceEEEEeceeecCCCCC-CCCCCCeEEEEEE--CCeeccCCccCCCCCCccCceEEEEe-c--CCCCCEEEEEE---
Confidence            35678999999999999999 7899999999999  77799999999999999999999973 2  22233455555   


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      ||+|..++|++||++.++++++.
T Consensus       455 ----------------~d~d~~~~~d~lG~~~~~l~~l~  477 (510)
T 3jzy_A          455 ----------------FDRDQFSPDDFLGRTEIPVAKIR  477 (510)
T ss_dssp             ----------------EECCSSSSCCEEEEEEEEHHHHH
T ss_pred             ----------------EeCCCCCCCCceEEEEEEHHHhc
Confidence                            49999999999999999999987

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.29  E-value=9.7e-12  Score=116.61  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=67.2

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD  391 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d  391 (622)
                      .+.|.|+|++|++|+    .++.+||||+++.    +..||++++ +++||+|||+|.|. +...   ...|.|.||   
T Consensus        13 ~~~L~V~V~~A~~l~----~~g~~DPYV~v~~----~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~---   77 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG----AQEKFNTYVTLKV----QNVESTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVW---   77 (167)
T ss_dssp             CCEEEEEEEEEECSS----CGGGCEEEEEEEE----TTEEEECCCEESSSCEEEEEEEEE-CCCT---TSEEEEEEE---
T ss_pred             eEEEEEEEEEEECCC----CCCCCCeEEEEEe----cceEEEEecCCCCCCCCCCEEEEE-eeCC---CCEEEEEEE---
Confidence            457999999999883    2678999999992    345677665 69999999999997 3321   223555555   


Q ss_pred             cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415         392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY  431 (622)
Q Consensus       392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~  431 (622)
                                      |++ .++|++||++.++|.++...
T Consensus        78 ----------------D~d-~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           78 ----------------NKG-LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             ----------------ECC-SSCCEEEEEEEEEGGGSCBC
T ss_pred             ----------------ECC-CCCCceEEEEEEEHHHhccc
Confidence                            998 88999999999999998743

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.24  E-value=4.2e-11  Score=136.86  Aligned_cols=127  Identities=29%  Similarity=0.561  Sum_probs=100.2

Q ss_pred             cCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeece
Q psy1415         291 DCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEE  367 (622)
Q Consensus       291 ~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~  367 (622)
                      .+..+.....|.|.+++.+  ..+.|.|.+++|++|..+| .+|.+||||++++.+++.   +++|+++++++||+|||+
T Consensus       151 ~C~~d~~~~~g~i~~~~~~--~~~~L~V~v~~a~~L~~~d-~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~  227 (674)
T 3pfq_A          151 LCGTDHTERRGRIYIQAHI--DREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET  227 (674)
T ss_dssp             CSSSCSSCCSCEEEEEEEE--CSSEEEEEEEEEESCCCCS-TTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEE
T ss_pred             cccccccccccccccccee--ccceeeeeeecccccCCCC-cccccCcccccccccCccccccccccccccccCCCccce
Confidence            3444555667899888877  4789999999999999999 799999999999977653   899999999999999999


Q ss_pred             eEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeecc
Q psy1415         368 FTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDR  444 (622)
Q Consensus       368 f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~  444 (622)
                      |.|. +...+                    ....|.++|||+|..+++++||++.++++++...+.   ..|+.+..
T Consensus       228 f~f~-~~~~~--------------------~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~w~~Lls  280 (674)
T 3pfq_A          228 FRFQ-LKESD--------------------KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV---DGWFKLLS  280 (674)
T ss_dssp             EEEE-CCSTT--------------------TTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCE---EEEEECBC
T ss_pred             eeee-cccCC--------------------ccceeeeEEeecccccccccccccccchhhhccCCc---ccceeecc
Confidence            9997 33322                    223355556699999999999999999999974432   44555543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.24  E-value=4e-11  Score=134.88  Aligned_cols=96  Identities=25%  Similarity=0.382  Sum_probs=78.3

Q ss_pred             CCCEEEEEEEEeeCCCCCCC-CCCCCCCEEEEEEeCC---CceeEeeeecCC-CCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         312 KENVLVVTVIKCRDLFIKDT-PSGSSDPYVKVHLLPD---KQKVKTRVLRKT-RNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~-~~~~sDPyv~v~l~~~---~~~~kT~vi~~t-~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      ..+.|.|.|++|++|+..+. .++.+||||+|.+.+.   ..++||++++++ +||+|||+|.|. +...++  ..|.|.
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE-EecCCC--CEEEEE
Confidence            34679999999999998872 2688999999999542   238899999998 999999999997 444433  346666


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   |+|..+++++||++.++|..+.
T Consensus       572 V~-------------------D~D~~~~dd~iG~~~ipl~~L~  595 (624)
T 1djx_A          572 VE-------------------DYDSSSKNDFIGQSTIPWNSLK  595 (624)
T ss_dssp             EE-------------------ECCSSSCCEEEEEEEEEGGGBC
T ss_pred             EE-------------------EcCCCCCCceeEEEEEEHHHcC
Confidence            66                   9998899999999999999986

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=99.22  E-value=1.4e-14  Score=131.18  Aligned_cols=70  Identities=19%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             eccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHH
Q psy1415          41 RRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKE  111 (622)
Q Consensus        41 ~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lke  111 (622)
                      .+|||+|++|||+++|++|+||++ |++.+++++.+   +|+    |||||++++++|+++++.|+++|+.|+.+|||
T Consensus        71 adrKyeE~~RKl~~~E~dLeraee-Rae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kLkE  147 (147)
T 2b9c_A           71 ADRKYEEVARKLVIIESDLERAEE-RAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE  147 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC-
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999 99999999998   777    99999999999999999999999999998875

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.16  E-value=3e-11  Score=137.14  Aligned_cols=106  Identities=23%  Similarity=0.437  Sum_probs=83.1

Q ss_pred             CCCEEEEEEEEeeCCCC---CCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEE
Q psy1415         312 KENVLVVTVIKCRDLFI---KDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVV  387 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~---~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V  387 (622)
                      ..+.|.|.|++|++|+.   +| .+|.+||||+|++.+.. .++||+++++++||+|||+|.|. +....  ...     
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D-~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~-v~~~~--~~~-----   86 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENV-----   86 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHH-HHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCB-----
T ss_pred             CccEEEEEEEEEECCCCccccC-CCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEE-ecCCC--CCE-----
Confidence            46789999999999998   77 68899999999995432 48999999999999999999997 33211  223     


Q ss_pred             EeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeec
Q psy1415         388 FSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFD  443 (622)
Q Consensus       388 ~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~  443 (622)
                                    |.|+|||+|.++ +++||++.++|.++....  .+..|+.+.
T Consensus        87 --------------L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g~--~~~~w~~L~  125 (749)
T 1cjy_A           87 --------------LEITLMDANYVM-DETLGTATFTVSSMKVGE--KKEVPFIFN  125 (749)
T ss_dssp             --------------CEEEEEECCSSS-CEEEEEECCBSTTSCTTC--CCCEEEEET
T ss_pred             --------------EEEEEEECCCCC-CceeEEEEEEHHHcCCCC--ceEEEEecC
Confidence                          445555999988 999999999999996333  334556664

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.05  E-value=1.4e-11  Score=135.00  Aligned_cols=99  Identities=21%  Similarity=0.279  Sum_probs=13.8

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCC---CCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT---LNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~t---lnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      .+.|+|.|++|++|+++|     ||||++++.  +.  .+.||++++++   +||.|||.|.|.+... .  ..|.|+||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~--~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~--~~L~v~V~   77 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD--DM--LYARTTSKPRSASGDTVFWGEHFEFNNLPA-V--RALRLHLY   77 (483)
T ss_dssp             EECC------------------------------------------------------CCEECC----------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC--Ce--EEeeeeEEeCCCCCCCCccccEEEEecCCC-c--cEEEEEEE
Confidence            467999999999999887     999999983  32  24589999999   9999999999996432 2  35999999


Q ss_pred             E-cC---CCCCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         576 D-WD---RVTKNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       576 D-~d---~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      | ++   +.++|++||++.|++..+. +....+||+|.+
T Consensus        78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------------CCEECC----
T ss_pred             ecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            9 45   3678999999999998655 367789999964

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.84  E-value=5e-09  Score=120.17  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=81.4

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCe--EeeEeeeeeccC-CCCCeeecE-EEEE-ecCCCCCccEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKR-TLNPVYNES-FVFE-VPADNLDSVSLELLL  574 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~--~~~~~kT~~~~~-tlnP~wne~-f~f~-v~~~~l~~~~L~i~V  574 (622)
                      +.|+|.|++|++|+..    .+||||++.+.+...  ...++||+++++ ++||+|||. |.|. |..+++.  .|.|.|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela--~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGC--EEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCcc--EEEEEE
Confidence            6799999999999853    589999999965221  124678999986 599999997 9998 7766554  599999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      ||++    +++||++.|+|+.+ .+++. +..|.+.-|..+
T Consensus       724 ~D~d----ddfiG~~~ipL~~L-~~GyR-~vpL~~~~g~~~  758 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGI-KPGYR-HVPLRNESNRPL  758 (816)
T ss_dssp             EETT----SCEEEEEEEESTTC-CCEEE-EEEEECTTSCEE
T ss_pred             EecC----CCeeeEEEEEHHHc-CCcce-EEEEeCCCCCCC
Confidence            9985    78999999999644 44543 577877777665

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.82  E-value=5.5e-09  Score=120.40  Aligned_cols=106  Identities=21%  Similarity=0.331  Sum_probs=81.6

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCC-eEeeEeeee-eccC-CCCCeeec-EEEE-EecCCCCCccEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTH-VKKR-TLNPVYNE-SFVF-EVPADNLDSVSLELL  573 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~-~~~~~~kT~-~~~~-tlnP~wne-~f~f-~v~~~~l~~~~L~i~  573 (622)
                      .+.|.|.|++|++|+.    +.+||||++.+.+.. ....++||+ ++++ ++||+||| .|.| .|..+++.  .|.|.
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~~  750 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVA  750 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEEE
Confidence            4689999999999985    468999999996522 111256898 7765 69999999 6999 88766655  59999


Q ss_pred             EEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCcee
Q psy1415         574 LLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIA  616 (622)
Q Consensus       574 V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~  616 (622)
                      |||++    +++||++.|+|..+ .+++ +|.+|.+.-|..+.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L-~~G~-r~v~L~~~~g~~~~  787 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINAL-NSGY-HHLCLHSESNMPLT  787 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGB-CCEE-EEEEEECTTCCEEE
T ss_pred             EEEeC----CCccceEeeehhhc-CCCc-EEEeccCCCCCCCC
Confidence            99986    88999999999654 3443 47788777666543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.80  E-value=8.4e-10  Score=120.87  Aligned_cols=90  Identities=9%  Similarity=-0.033  Sum_probs=8.9

Q ss_pred             ccccccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCCC---CCCCCCCCCCCCCCCCCCcccCCCeE
Q psy1415         169 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPT---GSTNSNNGAGSNSHSPIQPCVALPGT  245 (622)
Q Consensus       169 ~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t---~nP~~~E~~~f~~~~~~~~~~~~L~~  245 (622)
                      ....|.++|+.|+++++++     ||   ||++.+  .+....||+++++|   +||+|||+|.|.....    ...|.|
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dp---Yv~v~l--~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~----~~~L~v   74 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RY---YCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA----VRALRL   74 (483)
T ss_dssp             EEECC-------------------------------------------------------CCEECC--------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CC---eEEEEE--CCeEEeeeeEEeCCCCCCCCccccEEEEecCCC----ccEEEE
Confidence            4567778888888888774     88   999998  34456799999999   9999999999986543    378999


Q ss_pred             EEEec-c---ccCCCcceeeeccCCCCCCCC
Q psy1415         246 VVITE-N---EKAAPLVLGVAGPTTAGNGPA  272 (622)
Q Consensus       246 ~V~d~-d---~~~~dd~lG~~~~~l~~l~~~  272 (622)
                      .|||. |   +.++|++||++.+++.++..+
T Consensus        75 ~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~  105 (483)
T 3bxj_A           75 HLYRDSDKKRKKDKAGYVGLVTVPVATLAGR  105 (483)
T ss_dssp             -------------------------------
T ss_pred             EEEecCCccccCCCCceEEEEEEEHHHhcCC
Confidence            99995 4   478999999999999998654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.79  E-value=8.5e-09  Score=118.93  Aligned_cols=104  Identities=20%  Similarity=0.290  Sum_probs=80.1

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCC-eEeeEeeeeeccC-CCCCeeec-EEEEE-ecCCCCCccEEEEEEE
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKR-TLNPVYNE-SFVFE-VPADNLDSVSLELLLL  575 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~-~~~~~~kT~~~~~-tlnP~wne-~f~f~-v~~~~l~~~~L~i~V~  575 (622)
                      ..|+|.|++|++|+..    .+||||+|.+.+.. ....++||+++.+ ++||+||| .|.|. |..+++.  .|.|.||
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela--~Lrf~V~  798 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLA--SLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGC--EEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcC--EEEEEEE
Confidence            4799999999999853    58999999996521 1112468999986 59999999 69998 7655554  5999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      |++    +++||++.|+|..+ .+++. +..|.+.-|..+
T Consensus       799 D~d----ddfiG~~~lpL~~L-~~GyR-~vpL~~~~g~~l  832 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAI-RSGYH-YVCLRNEANQPL  832 (885)
T ss_dssp             ETT----TEEEEEEEEETTTC-CCEEE-EEEEECTTSCEE
T ss_pred             cCC----ccEEeeEEEEHHHc-CCCce-EEEecCCCCCcc
Confidence            987    88999999999654 45554 467777777653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.67  E-value=1.2e-07  Score=109.29  Aligned_cols=85  Identities=25%  Similarity=0.390  Sum_probs=65.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC--C--ceeEeeeecC-CCCCeeec-eeEEcccCcccCCCcEEEEEEE
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--K--QKVKTRVLRK-TRNPIYNE-EFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~--~--~~~kT~vi~~-t~nP~W~e-~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      .|.|.|++|++|+..     .+||||+|.+.+.  +  .++||+++++ ++||+||| +|.|..+...++  ..|+|.||
T Consensus       726 ~L~V~Visaq~L~~~-----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          726 ALRVKVISGQFLSDR-----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEESCCSS-----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             EEEEEEEEeccCccc-----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            689999999999743     4899999998641  2  2579999976 59999999 699962333333  24666666


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |++    +++||++.++|..|.
T Consensus       799 -------------------D~d----ddfiG~~~lpL~~L~  816 (885)
T 3ohm_B          799 -------------------EEG----GKFVGHRILPVSAIR  816 (885)
T ss_dssp             -------------------ETT----TEEEEEEEEETTTCC
T ss_pred             -------------------cCC----ccEEeeEEEEHHHcC
Confidence                               875    799999999999986

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.67  E-value=1.3e-07  Score=108.57  Aligned_cols=86  Identities=21%  Similarity=0.411  Sum_probs=66.7

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC---C--ceeEeeeecC-CCCCeeece-eEEcccCcccCCCcEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---K--QKVKTRVLRK-TRNPIYNEE-FTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~---~--~~~kT~vi~~-t~nP~W~e~-f~f~~~~~~~l~~~~L~~~  386 (622)
                      +.|.|.|++|++|+.+     .+||||+|.+.+.   .  +++||+++++ ++||+|||+ |.|..+...++  ..|+|.
T Consensus       650 ~~L~V~Visaq~L~~~-----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~  722 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK-----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRII  722 (816)
T ss_dssp             EEEEEEEEEEECCCSS-----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEE
T ss_pred             eEEEEEEEEcccCCCC-----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEE
Confidence            5789999999999743     4899999998642   1  3679999986 599999998 99962333333  356666


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   |++    +++||++.++|+.|.
T Consensus       723 V~-------------------D~d----ddfiG~~~ipL~~L~  742 (816)
T 3qr0_A          723 VS-------------------EEN----GKFIGHRVMPLDGIK  742 (816)
T ss_dssp             EE-------------------ETT----SCEEEEEEEESTTCC
T ss_pred             EE-------------------ecC----CCeeeEEEEEHHHcC
Confidence            66                   764    799999999999987

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.67  E-value=7.4e-08  Score=111.03  Aligned_cols=86  Identities=24%  Similarity=0.397  Sum_probs=67.0

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC--C--ceeEee-eec-CCCCCeeec-eeEE-cccCcccCCCcEEE
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--K--QKVKTR-VLR-KTRNPIYNE-EFTF-TGITPHQLKGSTLH  384 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~--~--~~~kT~-vi~-~t~nP~W~e-~f~f-~~~~~~~l~~~~L~  384 (622)
                      .+.|.|.|++|++|+.     +.+||||+|.+.+.  +  +++||+ +++ +++||+||| +|.| . +...++.  .|+
T Consensus       677 ~~~L~V~Visa~~L~~-----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el~--~Lr  748 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE-----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK-ILMPELA--SLR  748 (799)
T ss_dssp             CEEEEEEEEEEESCCS-----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGGC--EEE
T ss_pred             eeeEEEEEEeccccCc-----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEE-EccCCcc--EEE
Confidence            3578999999999974     35899999998631  2  268999 886 469999999 6999 6 4444443  566


Q ss_pred             EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |.||                   |++    +++||++.++|+.|.
T Consensus       749 ~~V~-------------------D~d----~d~iG~~~ipl~~L~  770 (799)
T 2zkm_X          749 VAVM-------------------EEG----NKFLGHRIIPINALN  770 (799)
T ss_dssp             EEEE-------------------ETT----TEEEEEEEEEGGGBC
T ss_pred             EEEE-------------------EeC----CCccceEeeehhhcC
Confidence            6666                   875    799999999999986

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=97.98  E-value=4.3e-05  Score=66.25  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=69.9

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeee-eeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT-HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW  577 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT-~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~  577 (622)
                      ...|+|...++.--+-+......||||.+.+...- ...+.+| ..+++|..|.||+.|.-.|..    ...|.|.||+.
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~-~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~   79 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEAL-STERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRA   79 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEE-EETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEEE
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeE-EcccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEcC
Confidence            35678887666532222333468999999984311 0112354 777889999999999988763    45699999964


Q ss_pred             CCCCCCceeEEEEECCCCCC------CcccchhhhhhcC
Q psy1415         578 DRVTKNEVIGRLDLGGDKSS------GTALTHWTDVCNS  610 (622)
Q Consensus       578 d~~~~d~~LG~v~i~L~~~~------~~~~~~W~~L~~~  610 (622)
                      ..    +|++.+.|++.++.      +...+.|.+|...
T Consensus        80 a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~  114 (126)
T 1yrk_A           80 AE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ  114 (126)
T ss_dssp             TT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS
T ss_pred             CC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC
Confidence            43    89999999997543      2344668777654

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.85  E-value=9.3e-05  Score=65.04  Aligned_cols=103  Identities=11%  Similarity=0.117  Sum_probs=70.7

Q ss_pred             ccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeee-eeccCCCCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKT-HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT-~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      .+.|+|.+.++.--+-+. .....||||.+.+... ....+.+| ..+++|..|.||+.|.-.|..    ...|.|.||+
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~-~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh   83 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEY-VESENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKG   83 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEE-EEETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEEC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeee-eeccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEc
Confidence            456888887766544332 2346899999998432 11113566 667789999999999888763    4569999995


Q ss_pred             cCCCCCCceeEEEEECCCCCC------CcccchhhhhhcC
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSS------GTALTHWTDVCNS  610 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~------~~~~~~W~~L~~~  610 (622)
                      ...    +|++.+.|++.++.      +...+.|.+|...
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC
Confidence            432    89999999997544      2344668777654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=97.83  E-value=0.00015  Score=62.95  Aligned_cols=83  Identities=17%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             CEEEEEEEEee--CCCCCCCCCCCCCCEEEEEEeCCCc----eeEe-eeecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415         314 NVLVVTVIKCR--DLFIKDTPSGSSDPYVKVHLLPDKQ----KVKT-RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV  386 (622)
Q Consensus       314 ~~L~V~vi~a~--~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT-~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~  386 (622)
                      .-|+|.+.+..  .|+.   .....||||.|.+  +..    ..+| ...++|..|+||+.|.-.+..     ...|.|.
T Consensus         6 ~flRi~~~~~~~~~~~~---~~~~lDPy~aV~v--dE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-----Gr~l~i~   75 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQA---EDEANQPFCAVKM--KEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIV   75 (126)
T ss_dssp             CEEEEEEEEEECSSCCC---SSSSCCCEEEEEE--EEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-----TCEEEEE
T ss_pred             ccEEeeeccccccccCC---ccccCCceEEEEe--eeeEEcccceeecccCCCCCcCccceEEeeeeC-----CEEEEEE
Confidence            34555553333  3332   2346899999998  332    2355 677899999999999876222     3456666


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |+                   +...    ++++.+.+.+.+|.
T Consensus        76 Vf-------------------h~a~----~fvAn~tV~~edL~   95 (126)
T 1yrk_A           76 LM-------------------RAAE----EPVSEVTVGVSVLA   95 (126)
T ss_dssp             EE-------------------EETT----EEEEEEEEEHHHHH
T ss_pred             EE-------------------cCCC----CeeeEEEEEHHHHH
Confidence            66                   4222    99999999999997

>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C

Probab=97.80  E-value=7.3e-06  Score=60.01  Aligned_cols=24  Identities=33%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccc
Q psy1415         114 ARAEFAEKTVKKLQKEVDRLEVSG  137 (622)
Q Consensus       114 ~rae~ae~~~~~l~~~~~~le~~~  137 (622)
                      +|||||||+|++||++||+|||+-
T Consensus         5 ~~aefAERsV~KLek~ID~LEdeL   28 (52)
T 2z5i_A            5 SKNYHLENEVARLKKLVDDLEDEL   28 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999864

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.78  E-value=0.00017  Score=63.31  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             CCCCCEEEEEEeCCCc----eeEe-eeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEe
Q psy1415         334 GSSDPYVKVHLLPDKQ----KVKT-RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFS  408 (622)
Q Consensus       334 ~~sDPyv~v~l~~~~~----~~kT-~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d  408 (622)
                      ...||||.|.+  +..    ..+| ...++|..|+||+.|.-.+..     ...|.|.|+                   +
T Consensus        30 ~~lDPY~aV~V--dE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-----Gr~l~i~Vf-------------------h   83 (138)
T 2enj_A           30 EAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-----GRVMQIIVK-------------------G   83 (138)
T ss_dssp             CCCCCEEEEEE--EEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-----SCEEEEEEE-------------------C
T ss_pred             ccCCceEEEEe--eeeeeccCceeecccCCCCCccccceEeeeEEC-----CeEEEEEEE-------------------c
Confidence            46899999998  332    3677 677889999999999876222     345666666                   3


Q ss_pred             ccCCCCcceeeEEEEeCCccc
Q psy1415         409 FDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       409 ~d~~~~d~~iG~~~i~l~~l~  429 (622)
                       +..   +|+..+.+.+.+|.
T Consensus        84 -~a~---~fVAn~tV~~edL~  100 (138)
T 2enj_A           84 -KNV---DLISETTVELYSLA  100 (138)
T ss_dssp             -SSC---SCCEEEEEESHHHH
T ss_pred             -CCC---CeeeEEEEEHHHHH
Confidence             222   99999999999997

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=97.75  E-value=3.6e-06  Score=76.01  Aligned_cols=85  Identities=21%  Similarity=0.304  Sum_probs=60.6

Q ss_pred             ccceeccccccCCccccccccccCCChh---------------------------hhh-cCCCCCccCcccchhhHHHHH
Q psy1415          49 AKKLALSQMTLKRPTAVRSPAAAGPNSH---------------------------YLK-KSPSPTYATPVANQRVEEYKR  100 (622)
Q Consensus        49 ~~kl~~~e~~l~r~e~~r~~~~e~~~~~---------------------------~l~-~lk~~~~~~~~~~~~e~~~~~  100 (622)
                      .|||+++|.+|+|+++ |+..+..+..+                           .|. +||.....++.+..+.+.-..
T Consensus         2 ~Rri~llEeeLer~ee-rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~R   80 (147)
T 2b9c_A            2 NRRIQLVEEELDRAQE-RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR   80 (147)
T ss_dssp             ---------CCGGGGT-TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            5899999999999999 98887322221                           111 666666667788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1415         101 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE  134 (622)
Q Consensus       101 ~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le  134 (622)
                      ++.+++..|..||.||+.||.++..|+.+++.+.
T Consensus        81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~  114 (147)
T 2b9c_A           81 KLVIIESDLERAEERAELSEGKCAELEEELKTVT  114 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988653

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*

Probab=95.49  E-value=5.9e-05  Score=68.89  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=42.3

Q ss_pred             hhhHHHHHHHHHHHHHH-----HHHHHHHH-------HHHHHHHHHHHhhhhhcccc
Q psy1415          93 QRVEEYKRQIKQLAVKL-----KEAEARAE-------FAEKTVKKLQKEVDRLEVSG  137 (622)
Q Consensus        93 ~~e~~~~~~i~~l~~~l-----keae~rae-------~ae~~~~~l~~~~~~le~~~  137 (622)
                      .++.+|+.+++.++.+|     ++|++|||       +||++|++||+++|+|||+.
T Consensus        95 ~~~~syek~lk~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL  151 (175)
T 3mud_A           95 SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKV  151 (175)
T ss_dssp             TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999     99999999       99999999999999999975

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.99  E-value=0.39  Score=55.88  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLD  576 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D  576 (622)
                      ...+.|.|..+.++...   ..++-||.+.+..++..... ..|..+....+|.|||.+.|++.-.++. +..|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46799999999998654   34678999998877766542 3344444577899999999998877654 5679999999


Q ss_pred             cCCC--C----------CCceeEEEEECCCCCC
Q psy1415         577 WDRV--T----------KNEVIGRLDLGGDKSS  597 (622)
Q Consensus       577 ~d~~--~----------~d~~LG~v~i~L~~~~  597 (622)
                      ....  +          .+..||.+.++|.+-.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCc
Confidence            6331  1          2459999999998644

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=92.36  E-value=0.38  Score=56.49  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW  577 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~  577 (622)
                      ...++|.|..+.++.... ....+-||.+.+..+++......+.......+|.|||.+.|++.-.++. ...|.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccCCCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            467999999999886432 3456789999998776655433333333456888999999999776654 56699999986


Q ss_pred             CCC----CCCceeEEEEECCCCCC
Q psy1415         578 DRV----TKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       578 d~~----~~d~~LG~v~i~L~~~~  597 (622)
                      ...    .....||.+.++|.+-.
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCTT
T ss_pred             cCccCcccccceeEEeeeeeEccC
Confidence            542    13458999999998544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.97  E-value=0.014  Score=49.11  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             ccceeccccccCCccccccccccCCChh-hhh------cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415          49 AKKLALSQMTLKRPTAVRSPAAAGPNSH-YLK------KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEK  121 (622)
Q Consensus        49 ~~kl~~~e~~l~r~e~~r~~~~e~~~~~-~l~------~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae~rae~ae~  121 (622)
                      -+|+..+..+.+.|.+ |++.++.+..+ +-+      .+.||.-.-.....--|.|++.+.....+|.+++.++..||+
T Consensus         8 KkKm~~lk~e~e~a~d-rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~   86 (101)
T 3u1c_A            8 KKKMQMLKLDKENALD-RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888888888 88877654444 111      000000000011122356777788888999999999999999


Q ss_pred             HHHHHHHhhhhhccc
Q psy1415         122 TVKKLQKEVDRLEVS  136 (622)
Q Consensus       122 ~~~~l~~~~~~le~~  136 (622)
                      .|..|.+-|.-||++
T Consensus        87 ev~~L~RriqllEEe  101 (101)
T 3u1c_A           87 EVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC
Confidence            999999999988864

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.40  E-value=4.7  Score=38.38  Aligned_cols=60  Identities=8%  Similarity=0.169  Sum_probs=47.5

Q ss_pred             eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC----CCCceeEEEEECCCC
Q psy1415         536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV----TKNEVIGRLDLGGDK  595 (622)
Q Consensus       536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~----~~d~~LG~v~i~L~~  595 (622)
                      ...++|.+.+.+.+|.|+|++.+.++.+...+..|.|+++....-    .....+|-+-++|-+
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            346688899999999999999999999888888899999875432    223478888888753

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.12  E-value=4.3  Score=38.62  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCC
Q psy1415         350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ  426 (622)
Q Consensus       350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~  426 (622)
                      .++|-|...+.+|.|+|++.+. ++.+...+.-|.|..+++.-..+               ....+..+|-+.++|-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k---------------~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDS---------------KDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSS---------------CCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEeccccc---------------ccccCCeeEEEEEEcc
Confidence            7888899999999999999997 88888888889899884332110               1123457898888874

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=87.49  E-value=0.55  Score=55.37  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLD  576 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D  576 (622)
                      ...++|.|..+.++...   ..++-||.+.+..++..... ..|..+....+|.|||.+.|++.-.++. +..|.|+||+
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence            46899999999998654   35688999888777766533 3355555567899999999999877755 5679999999


Q ss_pred             cCCC----------------------CCCceeEEEEECCCCCC
Q psy1415         577 WDRV----------------------TKNEVIGRLDLGGDKSS  597 (622)
Q Consensus       577 ~d~~----------------------~~d~~LG~v~i~L~~~~  597 (622)
                      ....                      +....||.+.++|.+-.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  471 (1092)
T 2y3a_A          429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK  471 (1092)
T ss_dssp             C------------------------------CCEEEEESBCTT
T ss_pred             ecCccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence            6311                      12348999999998544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.31  E-value=1.5  Score=36.48  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             ccceeccccccCCccccccccccCCChh-hhh------cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415          49 AKKLALSQMTLKRPTAVRSPAAAGPNSH-YLK------KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEK  121 (622)
Q Consensus        49 ~~kl~~~e~~l~r~e~~r~~~~e~~~~~-~l~------~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae~rae~ae~  121 (622)
                      -+|+..+..+.+.|.+ |++.++.+..+ +-+      .+.+|.-.-.....--|.|++.+.....+|.+++.++..||+
T Consensus         8 KkKm~~lk~e~e~a~d-~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A            8 KKKMQMLKLDKENAID-RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777788888 88877655444 111      000000000111223466788888888999999999999999


Q ss_pred             HHHHHHHhhhhhccc
Q psy1415         122 TVKKLQKEVDRLEVS  136 (622)
Q Consensus       122 ~~~~l~~~~~~le~~  136 (622)
                      .|..|.+-|.-+|++
T Consensus        87 evasLnRriqllEEe  101 (101)
T 3u59_A           87 EVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccC
Confidence            999999999988864

>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C

Probab=84.41  E-value=0.16  Score=35.48  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1415         105 LAVKLKEAEARAEFAEKTVKKLQKEVDR  132 (622)
Q Consensus       105 l~~~lkeae~rae~ae~~~~~l~~~~~~  132 (622)
                      ++..|.||++|||.||+++++|......
T Consensus         4 lQrELeEa~Erae~ae~~vnkLR~k~R~   31 (45)
T 3zwh_Q            4 LQRELEDATETADAMNREVSSLKNKLRR   31 (45)
T ss_dssp             SSSHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4457999999999999999999876543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=83.36  E-value=4.5  Score=47.11  Aligned_cols=107  Identities=13%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccC-CCcEEEE
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQL-KGSTLHF  385 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-~~~~L~~  385 (622)
                      .-...+.|.|..+.++...    ..++-||.+.+..|++    ...|..+....+|.|||.+.|. +...+| .+..|.|
T Consensus       214 ~~~~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~  288 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNAD----ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCF  288 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC-------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEE
T ss_pred             hcCCceEEEEEEecccCCC----CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEE
Confidence            3457899999999999654    2467899988876765    3455555557789999999997 555554 4567888


Q ss_pred             EEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         386 VVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       386 ~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +||+-.....+..  ..+    + ..-..+..||++.++|=+-.
T Consensus       289 ti~~~~~~~~~~~--~~~----~-~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          289 ALYAVVEKAKKAR--STK----K-KSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEEEEC-----------------------CEEEEEEEEESBCTT
T ss_pred             EEEEecCCccCcc--ccc----c-ccccccceEEEEeeeEECCc
Confidence            8883221000000  000    0 00113458999999886543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=82.32  E-value=11  Score=44.35  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccC-CCcEEEEE
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQL-KGSTLHFV  386 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-~~~~L~~~  386 (622)
                      -...+.|.|+.+.++....  ....+-||.+.+..|++    ..+|..+ ...+|.|||...|. +...+| ....|.|+
T Consensus       353 ~~~~f~v~i~~~~~~n~~~--~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~-i~i~dLPr~arL~~t  428 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI--RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYD-IYIPDLPRAARLCLS  428 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC--SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEE-EEGGGCCTTCEEEEE
T ss_pred             CCCCEEEEEEEecCCCCCc--cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEec-CccccCChhcEEEEE
Confidence            4578999999999886432  34568899999887776    3344433 35678899999997 555554 34567777


Q ss_pred             EEeeccCCCCCCCcceEEEEEeccCC----CCcceeeEEEEeCCccc
Q psy1415         387 VFSFDRYSRDDIGSTLHFVVFSFDRY----SRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       387 V~d~d~~~~~d~~~~l~i~v~d~d~~----~~d~~iG~~~i~l~~l~  429 (622)
                      ||                   +....    ..+..||.+.++|=+..
T Consensus       429 l~-------------------~~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          429 IC-------------------SVKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             EC-------------------CCCCCC-------CCEEEEEESBCTT
T ss_pred             EE-------------------EecCccCcccccceeEEeeeeeEccC
Confidence            77                   32221    23568999999986553

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=81.77  E-value=0.076  Score=35.90  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=24.1

Q ss_pred             cccceEeeehhhHHHHHhhheeeeeeeeccC
Q psy1415          14 VSGHTVLGLGLAGLVFVATVCLATCYCRRRS   44 (622)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k   44 (622)
                      .++-+++|++++.++-++-++...|+++|||
T Consensus         8 ls~GaIAGiVvG~v~gv~li~~l~~~~~rrr   38 (38)
T 2k1k_A            8 LTGGEIVAVIFGLLLGAALLLGILVFRSRRA   38 (38)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence            4567889999988877777777778877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	622
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-45
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-22
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-38
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-22
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-38
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-18
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-37
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-20
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-29
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	7e-28
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-27
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-24
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-27
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-21
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-25
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-24
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	5e-21
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-18
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-19
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-18
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-17
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	9e-12
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	5e-17
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	9e-15
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	8e-12
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-14
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-14
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-10
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-10
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	8e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.001
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	7e-10
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-08
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-08
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-08
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	5e-07

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  154 bits (390), Expect = 4e-45
 Identities = 75/133 (56%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RGE+L+SLC+Q   N  T+VVLKAR+LPK DV+GL+DPYVKV L +  +R++KKKTHVKK
Sbjct: 1   RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
            T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG   + G+   HW 
Sbjct: 61  CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT-AEGSGGGHWK 119

Query: 606 DVCNSPRRQIAEW 618
           ++C+ PRRQIA+W
Sbjct: 120 EICDFPRRQIAKW 132

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.9 bits (225), Expect = 3e-22
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
           G++   + YQ   N L V V+K R L   D  SG SDPYVKV+L   K+   K KT V +
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHVKK 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
            T N ++NE F F  I    L+  ++ F+V   +R SR++ IG  
Sbjct: 61  CTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRL 104

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  136 bits (343), Expect = 2e-38
 Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG+IL+SL +        + +++  +L  MD  G +DP+VK++L     + AK KT +KK
Sbjct: 1   RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
           +TLNP +NE F +++   +L   SL++ + D+D    N+ IG   L G  + G  L HW 
Sbjct: 61  KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 119

Query: 606 DVCNSPRRQIAEWLT 620
           +   +  ++I  W  
Sbjct: 120 ECLKNKDKKIERWHQ 134

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.8 bits (227), Expect = 1e-22
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
           G+I   + Y  ++  L+V +I+C  L   D  +G SDP+VK+ L PD   K K KT++ +
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKAKHKTQIKK 60

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHF 404
           KT NP +NEEF +  I    L   +L   V+ +D    +D       
Sbjct: 61  KTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 106

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (341), Expect = 5e-38
 Identities = 54/137 (39%), Positives = 88/137 (64%)

Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
           +    GE+  SLC+ P A   T+ ++KA NL  MD+TG +DPYVK  L+ +G+R+ K+KT
Sbjct: 2   EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKT 61

Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL 601
            +KK TLNP YNE+ VF+V  +++++V L + ++D+D +  NEVIG   +G + +     
Sbjct: 62  SIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 121

Query: 602 THWTDVCNSPRRQIAEW 618
            HW ++  +PR+ +  W
Sbjct: 122 EHWAEMLANPRKPVEHW 138

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.6 bits (198), Expect = 1e-18
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKT 353
           +  LG++ F + Y     +L VT+IK  +L   D  +G SDPYVK  L+ + +   K KT
Sbjct: 3   KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDL-TGFSDPYVKASLISEGRRLKKRKT 61

Query: 354 RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
            + + T NP YNE   F  + P  ++   L   V  +D    ++ IG  
Sbjct: 62  SIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVC 109

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (337), Expect = 2e-37
 Identities = 67/135 (49%), Positives = 99/135 (73%), Gaps = 1/135 (0%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
            G+I  SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+  G+R+ KKKT +KK
Sbjct: 11  LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
            TLNP YNESF FEVP + +  V + + +LD+D++ KN+ IG++ +G + S+G  L HW+
Sbjct: 71  NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWS 129

Query: 606 DVCNSPRRQIAEWLT 620
           D+  +PRR IA+W T
Sbjct: 130 DMLANPRRPIAQWHT 144

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.6 bits (211), Expect = 3e-20
 Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRV 355
           KLG I F ++Y      L V +++ ++L   D   G SDPYVK+HL+ + +++   KT +
Sbjct: 10  KLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTI 68

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
            + T NP YNE F+F  +   Q++   +   V  +D+  ++D IG  
Sbjct: 69  KKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-29
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G++ + L +    ++  + +L A++LP  +     +PYVK+Y L       K++T   K+
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 547 TLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTK--NEVIGRLDLGGDKSSGTALTH 603
           TL P +N++F++  V         LE+ L D  RV +  +E +G + +  + +      H
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

Query: 604 W 604
           W
Sbjct: 121 W 121

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 7e-28
 Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLR 357
           GQ+  K+ + +  + L+VT++  +DL  ++      +PYVK++ LPD+    K +T+ ++
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVK 59

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
           KT  P +N+ F ++ +   + +   L   ++   R   +                   + 
Sbjct: 60  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREE-----------------ESEF 102

Query: 418 VGEVFYSLQSFETYGST 434
           +GE+   L++       
Sbjct: 103 LGEILIELETALLDDEP 119

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (265), Expect = 1e-27
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
            +  G++  SL +    N+  + +++A  LP +D+ G +DPYVKV+LL   ++  K +T 
Sbjct: 17  EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 74

Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
           V ++TLNPV+NE F F+VP   L   +L + + D+DR +K+++IG   +       G   
Sbjct: 75  VHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134

Query: 602 THWTD 606
             W D
Sbjct: 135 EEWRD 139

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.8 bits (240), Expect = 3e-24
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 9/133 (6%)

Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRV 355
           E KLG++ + + Y  + N L+V +I+  +L   D   G+SDPYVKV LLPDK+ K +T+V
Sbjct: 17  EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKV 75

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSR 414
            RKT NP++NE+FTF  +   +L G TL   V+ FDR+S+ D IG          +    
Sbjct: 76  HRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGE----FKVPMNTVDF 130

Query: 415 DDIVGEVFYSLQS 427
             +  E +  LQS
Sbjct: 131 GHVT-EEWRDLQS 142

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 3e-27
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
           RG I +            +VV  A+NL  MD  GL+DPYVK+ L+   +  +K+KT   K
Sbjct: 3   RGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60

Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHW 604
            +LNP +NE+F F++   + D   L + + DWD  ++N+ +G L  G  +     +  W
Sbjct: 61  CSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW 118

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.2 bits (218), Expect = 2e-21
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 27/135 (20%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP---DKQKVKTRV 355
           + G+I+ +        VL+V V   ++L   D P+G SDPYVK+ L+P    + K KT+ 
Sbjct: 2   RRGRIYIQAHIDR--EVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKT 58

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRD 415
           ++ + NP +NE F F                          D    L   ++ +D  SR+
Sbjct: 59  IKCSLNPEWNETFRFQ---------------------LKESDKDRRLSVEIWDWDLTSRN 97

Query: 416 DIVGEVFYSLQSFET 430
           D +G + + +   + 
Sbjct: 98  DFMGSLSFGISELQK 112

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (245), Expect = 6e-25
 Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTG-LADPYVKVYLLYKGQRVAKKKT 541
           S G G +  SL +      F + + +AR LP MD     +DPY+K+ +L + +   K KT
Sbjct: 5   SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62

Query: 542 HVKKRTLNPVYNESFV-FEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
            V ++TL+P ++E+F  + +P   +  ++L   +L +DR +++++IG   + L G + S 
Sbjct: 63  RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

Query: 599 TALTHWTDVCNSP 611
             +    ++ + P
Sbjct: 123 GKMLMNREIISGP 135

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (243), Expect = 1e-24
 Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRV 355
              LG +FF ++Y  +    VV + + R L   D  S +SDPY+K+ +LP+ K KVKTRV
Sbjct: 5   SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV 64

Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           LRKT +P ++E FTF GI   Q++   LHF + SFDR+SRDD IG  
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEV 111

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.9 bits (214), Expect = 5e-21
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
           G I  +L +   +++  + +L+A +LP  D  G +DPYVK+YLL   ++  K +T V ++
Sbjct: 5   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHRK 62

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGD-KSSGTALTH 603
           TLNP++NE+F F VP   L    L   + D+DR +++++IG   LD   +          
Sbjct: 63  TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122

Query: 604 WTDV 607
           W D+
Sbjct: 123 WRDI 126

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (194), Expect = 2e-18
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP-DKQKVKTRVLR 357
             G+I F ++Y    + LVV +++  DL  KD  +G SDPYVK++LLP  K+K +T+V R
Sbjct: 3   PCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTKVHR 61

Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
           KT NPI+NE F F+ +   +L    LHF V+ FDR+SR D IG  
Sbjct: 62  KTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQV 105

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 13/130 (10%)

Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-------- 537
            GEI L + +        I +L+ARNL   D  G +DP+VKVYLL    +V         
Sbjct: 6   TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 538 -KKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GD 594
            K++T   +++LNP +N++ +++ +  + L   +LE+ + D+DR + N+ +G + +    
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

Query: 595 KSSGTALTHW 604
            S       W
Sbjct: 124 TSHLDNTPRW 133

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.7 bits (198), Expect = 1e-18
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 21/140 (15%)

Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD------------K 348
           G+I  +I Y      L++ +++ R+L  +D  +G SDP+VKV+LLP             +
Sbjct: 7   GEIQLQINYDL--GNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVF 407
            K +T+ ++K+ NP +N+   +  I+  QL   TL   V+ +DR+S +D +G     V+ 
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE----VLI 119

Query: 408 SFDRYSRDDIVGEVFYSLQS 427
                S  D     +Y L+ 
Sbjct: 120 DLSSTSHLDNT-PRWYPLKE 138

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 495 WQPAANRFTIVVLKARNLPK--MDVTGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPV 551
           W+P   R  + ++  + LPK   +   + DP V V +   G+    ++T  +     NP 
Sbjct: 1   WRPE--RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR 58

Query: 552 YNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG 587
           ++  F FEV   +L  V     + D+D  +KN+ IG
Sbjct: 59  WDMEFEFEVTVPDLALVRFM--VEDYDSSSKNDFIG 92

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 9e-12
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 316 LVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLP---DKQKVKTRVLRKT-RNPIYNEEFTF 370
           L V +I  + L   +   +   DP V V +     D    +T V+     NP ++ EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
               P     + + F+V  +D  S++D          S  +  R
Sbjct: 66  EVTVPDL---ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 106

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 5e-17
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
            ++   L +        +  L+A      +  G  D YV+  +        + +T +KKR
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVA-NRTGSVEAQTALKKR 68

Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHWT 605
            L+  + E  V  +  + L + +L L L   DR +++ V G L LG    S       W 
Sbjct: 69  QLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWG 128

Query: 606 D 606
           +
Sbjct: 129 E 129

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 1e-14
 Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK--Q 349
               +  +  ++ + + Y  ++  L VT ++           G  D YV+  +       
Sbjct: 4   GSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS----NHDGGCDCYVQGSVANRTGSV 59

Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSF 409
           + +T + ++  +  + E      +   +L  +TL   + + DR+SR  +      +    
Sbjct: 60  EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGE---LRLGL 115

Query: 410 DRYSRDDIVGEVFYSLQS 427
           D  S        +  L++
Sbjct: 116 DGTSVPLGA-AQWGELKT 132

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 9e-15
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 498 AANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
           ++++FT+VVL+A  + K    D+    DPYV++++       ++K+T      +NPV+NE
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNE 58

Query: 555 SFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHW 604
           +F F +  +  + + +   L+D + V  +E +G           G      
Sbjct: 59  TFEFILDPNQENVLEIT--LMDANYV-MDETLGTATFTVSSMKVGEKKEVP 106

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 8e-12
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 314 NVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTF 370
           +   V V++   +          + DPYV++ +      + +TR      NP++NE F F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
                     + L   +   +    + +G+      F+       +   EV +    
Sbjct: 63  ILDPNQ---ENVLEITLMDANYVMDETLGT----ATFTVSSMKVGEKK-EVPFIFNQ 111

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            +V++ A+ L   D     DPYV++      +   +K    +     P +NE+F+F V  
Sbjct: 13  EVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR--LDLGGDKSSGTALTHW 604
              +       + D D  T+++ +G   + L      G+     
Sbjct: 69  GTTELK---AKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA 109

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 33/185 (17%), Positives = 51/185 (27%), Gaps = 63/185 (34%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
            L V ++  + L   D    + DPYV++      QK           P +NE F FT   
Sbjct: 11  TLEVVLVSAKGLEDAD-FLNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVSE 68

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGST 434
                                      L   +F  D  + DD VGE    L+     GS 
Sbjct: 69  GTT-----------------------ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105

Query: 435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
                                                      N+    + +GEI ++L 
Sbjct: 106 --------------------------------------PPTAYNVVKDEEYKGEIWVALS 127

Query: 495 WQPAA 499
           ++P+ 
Sbjct: 128 FKPSG 132

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 321 IKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQ 377
               +L        +S P+  V +       +       + T  P +   F       H 
Sbjct: 9   FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA-----HI 63

Query: 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426
            +G  +  V+         ++   +  +    +R  +++   E +  LQ
Sbjct: 64  YEGRVIQIVLMRAAEDPMSEVTVGVSVL---AERCKKNNGKAEFWLDLQ 109

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 505 VVLKARNL-PKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
           +   +  L         + P+  V +         K    KK T+ P +  +F   +   
Sbjct: 7   ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG 66

Query: 564 NLDSVSLELLLLDWDRVTKNEVIGRL 589
                 ++++L+       +EV   +
Sbjct: 67  R----VIQIVLMRAAEDPMSEVTVGV 88

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            + VLKA +L   D +G +DP+  +          + +TH   + LNP +N+ F F +  
Sbjct: 9   QVKVLKAADLLAADFSGKSDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
            +      E+ + D D     + +G++ +
Sbjct: 64  IHDVL---EVTVFDEDGDKPPDFLGKVAI 89

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 5e-09
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 26/116 (22%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           +L V V+K  DL   D  SG SDP+  +       +++T  + K  NP +N+ FT     
Sbjct: 7   ILQVKVLKAADLLAADF-SGKSDPFCLLE--LGNDRLQTHTVYKNLNPEWNKVFT----- 58

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430
                             +   DI   L   VF  D     D +G+V   L S   
Sbjct: 59  ------------------FPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD 96

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 4e-10
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
           ++  I V+ A+            PYV+V +         KKT     T +P + +     
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVI 60

Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
           V   +         +     +  + ++G   L
Sbjct: 61  VTPVSKLHFR----VWSHQTLKSDVLLGTAAL 88

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 8e-10
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 31/148 (20%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
           L +TVI  +    K        PYV+V +  D Q  KT     T +P + +  T      
Sbjct: 8   LQITVISAKLKENKKN-WFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVIVTPV 64

Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGST 434
            +                        LHF V+S      D ++G     +    ++    
Sbjct: 65  SK------------------------LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 100

Query: 435 LHFVVFSFD---RYSRDDIVGEVFYSLQ 459
           L  VV +          + +G++   L 
Sbjct: 101 LEEVVVTLQLGGDKEPTETIGDLSICLD 128

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 381 STLHFVVFS-FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET------YGS 433
           S L   V S   + ++ +      +V  + D  S+         S +  +         S
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65

Query: 434 TLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGHSLSFCR-DIQPRNLRIKSQGRGEILL 491
            LHF V+S      D ++G     +    ++    L      +Q    +  ++  G++ +
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125

Query: 492 SL 493
            L
Sbjct: 126 CL 127

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 7e-10
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLL---YKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
           +I V+  + L +  V      YV+V L       +R  + K      ++NPV+ E     
Sbjct: 4   SITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 560 VPADNLDSVSLELLLLDWDR 579
                 +  SL + +++   
Sbjct: 60  EKILMPELASLRVAVMEEGN 79

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD------KQKVKTRVLRKTRNPIYNEEFT 369
           L +TVI  + L        S   YV+V L         + + K      + NP++ EE  
Sbjct: 3   LSITVISGQFL-----SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP- 56

Query: 370 FTGITPHQLKGSTLHFVVFSFDR 392
           F        + ++L   V     
Sbjct: 57  FVFEKILMPELASLRVAVMEEGN 79

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 30/129 (23%)

Query: 503 TIVVLKARNLPKMD-----------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPV 551
            I + +A +L                T L DPY+              +T  K++T +P 
Sbjct: 9   KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSPA 64

Query: 552 YNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP 611
           +++ FV +V          EL +     +  ++ +    +            + ++  + 
Sbjct: 65  WHDEFVTDVCNGRKI----ELAVFHDAPIGYDDFVANCTI-----------QFEELLQNG 109

Query: 612 RRQIAEWLT 620
            R   +W+ 
Sbjct: 110 SRHFEDWID 118

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 315 VLVVTVIKCRDLFIKDT----------PSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIY 364
           +L + + +   L                +   DPY+ +++   +   +T   +KT +P +
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPAW 65

Query: 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424
           ++EF        +     +   VF       DD  +          +        E +  
Sbjct: 66  HDEFVTDVCNGRK-----IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF--EDWID 118

Query: 425 LQ 426
           L+
Sbjct: 119 LE 120

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
           +L V V K +            + YV + +     K  T    +   P + ++F F    
Sbjct: 3   LLCVGVKKAKFD----GAQEKFNTYVTLKV--QNVKSTTIA-VRGSQPSWEQDFMFEINR 55

Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGST 401
                   L   V++        +G+ 
Sbjct: 56  LDL----GLTVEVWNKGLIWDTMVGTV 78

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 24/118 (20%)

Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
            + V KA+     +     + YV +      +    K T +  R   P + + F+FE+  
Sbjct: 5   CVGVKKAKFDGAQE---KFNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEINR 55

Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLT 620
            +L        +  W++           L  D   GT       +  S      EWLT
Sbjct: 56  LDLGLT-----VEVWNK----------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	622
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.94
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.93
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.92
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.91
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.83
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.82
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.82
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.81
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.8
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.78
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.78
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.78
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.78
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.78
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.77
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.75
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.72
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.7
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.69
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.65
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.64
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.63
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.6
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.59
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.59
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.58
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.57
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.54
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.52
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.47
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.43
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.25
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.25
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.22
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.1
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.6
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.36

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.4e-26  Score=207.86  Aligned_cols=135  Identities=56%  Similarity=0.971  Sum_probs=121.5

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.++++|.|..+.|.|.|++|+||++++..|.+||||++++.+++....+++|++++++.||.|||.|.|.++..++
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~   80 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence            59999999999999999999999999999999999999999999888877778899999999999999999999988888


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      ....|.|+|||++.++++++||++.|++. ..+.+..||++|+.+|++.|++||+|
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~-~~~~~~~hW~~ll~~~~k~i~~Wh~L  135 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRNEVIGRLVLGAT-AEGSGGGHWKEICDFPRRQIAKWHML  135 (138)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTT-CCSHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred             CccEEEEEEEeCCCCCCCCEEEEEEEcch-hCCchHHHHHHHHhCCCCeeeECeEc
Confidence            88889999999999999999999999985 46778899999999999999999998

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.3e-26  Score=205.87  Aligned_cols=136  Identities=32%  Similarity=0.625  Sum_probs=124.0

Q ss_pred             CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415         486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL  565 (622)
Q Consensus       486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l  565 (622)
                      +|+|.++++|.|..+.|+|.|++|+||+.++..|.+||||++++.+++....+++|++++++.||.|||.|.|.++..++
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   80 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL   80 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence            69999999999999999999999999999999999999999999876666667899999999999999999999987777


Q ss_pred             CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      ....|.|+|||++.++++++||++.|++.. .+.+..|||+|+..|++.+++||+|+
T Consensus        81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~-~~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          81 AKKSLDISVWDYDIGKSNDYIGGCQLGISA-KGERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEETTC-CHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             cccEEEEEeeeCCCCCCCCEEEEEEeCccc-cCcchhhhhhHhhCCCCeeeEceecc
Confidence            778899999999999999999999999964 56778999999999999999999996

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.7e-25  Score=203.82  Aligned_cols=138  Identities=49%  Similarity=0.879  Sum_probs=129.0

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD  563 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~  563 (622)
                      ...|+|.++++|.|..+.|.|.|++|+||+..+..+.+||||++++.+++.....++|++++++.||.|||.|.|.++.+
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~   88 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence            46899999999999999999999999999999999999999999999888887788999999999999999999999888


Q ss_pred             CCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415         564 NLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR  622 (622)
Q Consensus       564 ~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~  622 (622)
                      ++.+..|.|+|||++.++++++||++.|++. ..+.+..||.+++..|++.+++||+|+
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~-~~~~~~~hW~~~~~~~~~~v~~Wh~L~  146 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSDMLANPRRPIAQWHTLQ  146 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETT-CCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecc-cCChhHHHHHHHHhCCCCceeEeEeCC
Confidence            7777889999999999999999999999995 456788999999999999999999985

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=4e-26  Score=208.24  Aligned_cols=139  Identities=39%  Similarity=0.774  Sum_probs=127.3

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ..+.|+|.++++|.|..|.|.|.|++|+||++.+..|.+||||++++.+++....+++|++++++.||.|||.|.|.++.
T Consensus         3 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~   82 (145)
T d1dqva2           3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP   82 (145)
T ss_dssp             CSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS
T ss_pred             cCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh
Confidence            35789999999999999999999999999999999999999999999776665557789999999999999999999887


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY  621 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l  621 (622)
                      .++....|.|.|||++.++++++||++.|++......+..||++|+.+|++.|++||+|
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L  141 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL  141 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCC
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEEC
Confidence            77677779999999999999999999999998776678899999999999999999998

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.7e-21  Score=173.81  Aligned_cols=125  Identities=32%  Similarity=0.607  Sum_probs=107.6

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD  563 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~  563 (622)
                      .+.|+|.++++|.+..+.|.|.|++|+||++++..|.+||||++++.+++.  .+++|++++++.||.|||.|.|.+...
T Consensus         2 ~p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~   79 (130)
T d1dqva1           2 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFSVPLA   79 (130)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             CCcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCC--ceEeceeEcCCCCeeeeeEEEEEEchH
Confidence            457999999999999999999999999999999999999999999865433  267899999999999999999999877


Q ss_pred             CCCccEEEEEEEEcCCCCCCceeEEEEECCCC-CC--CcccchhhhhhcC
Q psy1415         564 NLDSVSLELLLLDWDRVTKNEVIGRLDLGGDK-SS--GTALTHWTDVCNS  610 (622)
Q Consensus       564 ~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~-~~--~~~~~~W~~L~~~  610 (622)
                      ++.+..|.|+|||++.+++|++||++.|++.. ..  .....+||+|+..
T Consensus        80 ~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             GGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             HcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            76667799999999999999999999998642 22  2345679988764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.6e-21  Score=172.10  Aligned_cols=124  Identities=31%  Similarity=0.543  Sum_probs=107.4

Q ss_pred             CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415         485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN  564 (622)
Q Consensus       485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~  564 (622)
                      .+|.|.+++.|.  .+.|.|.|++|+||++++..|.+||||++++.+++....+++|++++++.||.|||.|.|.+....
T Consensus         2 ~rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_           2 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             cccEEEEEEEec--CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            579999998884  689999999999999999999999999999977654455789999999999999999999987543


Q ss_pred             CCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415         565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP  611 (622)
Q Consensus       565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p  611 (622)
                      . +..|.|+|||++.+++|++||.+.|+|.++...+..+||+|.+.+
T Consensus        80 ~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~~~  125 (132)
T d1a25a_          80 K-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE  125 (132)
T ss_dssp             G-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBCHH
T ss_pred             c-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCCCCeEEECCCCC
Confidence            3 346999999999999999999999999876666778899997654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6.4e-21  Score=172.88  Aligned_cols=125  Identities=34%  Similarity=0.654  Sum_probs=108.8

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....|+|.+++.|.+..+.|+|.|++|+||++++..|.+||||++++.+++..  +++|++++++.||.|||.|.|.+..
T Consensus        17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~kT~~~~~t~~P~wne~f~f~i~~   94 (143)
T d1rsya_          17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPY   94 (143)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCS--CEECCCCTTCSSCEEEEEEEECCCH
T ss_pred             hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCe--eEEEEEeccccCcceeeeeEEEEEe
Confidence            35679999999999999999999999999999999999999999999765443  5789999999999999999999876


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCN  609 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~  609 (622)
                      .++....|.|+|||++.++++++||.+.|+|.++. +....+||+|..
T Consensus        95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            66666779999999999999999999999997653 455677888754

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.3e-21  Score=168.82  Aligned_cols=121  Identities=26%  Similarity=0.512  Sum_probs=101.7

Q ss_pred             CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCCC
Q psy1415         487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNL  565 (622)
Q Consensus       487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~l  565 (622)
                      |+|.+++.|.+..+.|.|.|++|+||++.+..+.+||||++++.++.....+++|++++++.||.|||.|.|. +...++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            7899999999999999999999999999999999999999999865444557899999999999999999996 666666


Q ss_pred             CccEEEEEEEEcCCCC--CCceeEEEEECCCCCCCcccchhhhh
Q psy1415         566 DSVSLELLLLDWDRVT--KNEVIGRLDLGGDKSSGTALTHWTDV  607 (622)
Q Consensus       566 ~~~~L~i~V~D~d~~~--~d~~LG~v~i~L~~~~~~~~~~W~~L  607 (622)
                      ....|.|+|||++.++  ++++||++.|+|.+.......+||+|
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L  124 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL  124 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEEC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeC
Confidence            7778999999999763  46699999999986665556677766

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=163.27  Aligned_cols=117  Identities=46%  Similarity=0.792  Sum_probs=101.1

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      ....|+|++++.|.+..+.|.|+|++|+||+.++...+.+||||++++.+++. .+||++++++.||.|||+|.|..++.
T Consensus         5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   84 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY   84 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCH
Confidence            44579999999999999999999999999998873334589999999987665 88999999999999999999965777


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG  432 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~  432 (622)
                      .++....|.|.||                   |++.++++++||++.++|+++...+
T Consensus        85 ~~l~~~~L~~~V~-------------------d~d~~~~~~~iG~~~i~L~~~~~~~  122 (138)
T d1ugka_          85 TQIQELALHFTIL-------------------SFDRFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             TTGGGCEEEEEEE-------------------EECSSCCCCCCEEEEEECTTCCCTT
T ss_pred             HHcccceEEEEEE-------------------ECCCCCCCcEEEEEEEEcccccCCC
Confidence            7777777777777                   8888899999999999999986333

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=6.2e-20  Score=163.47  Aligned_cols=110  Identities=44%  Similarity=0.730  Sum_probs=96.0

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      ..|+|.+++.|.+..+.|.|.|++|+||+.++ .++.+||||++++.+++. +++|++++++.||+|||+|.|. +...+
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~   80 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAE   80 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCS-TTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGG
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCcccc-CCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEE-EchHH
Confidence            46999999999999999999999999999998 789999999999976554 8999999999999999999997 77676


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      +....|.|.||                   |++.++++++||++.+++....
T Consensus        81 ~~~~~L~v~V~-------------------d~~~~~~d~~iG~~~i~~~~~l  113 (130)
T d1dqva1          81 LAQRKLHFSVY-------------------DFDRFSRHDLIGQVVLDNLLEL  113 (130)
T ss_dssp             GSSCCCEEEEE-------------------ECCSSSCCCEEEEEECCCTTGG
T ss_pred             cCCCeEEEEEE-------------------EcCCCCCCceEEEEEECchhhh
Confidence            66656666666                   9999999999999999865443

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.9e-19  Score=161.78  Aligned_cols=112  Identities=45%  Similarity=0.788  Sum_probs=100.0

Q ss_pred             CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      ....|+|++++.|.+..+.|.|.|++|+||+.++ ..+.+||||++++.+++. .++|++++++.||+|||+|.|. +..
T Consensus        17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~-i~~   94 (143)
T d1rsya_          17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPY   94 (143)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCH
T ss_pred             hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCC-CCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEE-EEe
Confidence            4567999999999999999999999999999998 789999999999987654 8999999999999999999997 666


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .++....|.|.||                   |++.++++++||++.++|+++.
T Consensus        95 ~~l~~~~L~i~V~-------------------d~d~~~~~~~iG~~~i~L~~~~  129 (143)
T d1rsya_          95 SELGGKTLVMAVY-------------------DFDRFSKHDIIGEFKVPMNTVD  129 (143)
T ss_dssp             HHHTTCEEEEEEE-------------------ECCSSSCCEEEEEEEEEGGGCC
T ss_pred             eccCCceEEEEEE-------------------EcCCCCCCcEEEEEEEEchhcc
Confidence            6666667777777                   8888899999999999999986

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.4e-18  Score=155.84  Aligned_cols=109  Identities=33%  Similarity=0.570  Sum_probs=96.8

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|.+++.|.+..+.|.|.|++|+||+.++ ..+.+||||++++.+++.   ++||++++++.||.|||+|.|. ++..
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~   78 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMD-ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHS   78 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCC-CCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE-eEHH
Confidence            4999999999999999999999999999988 688999999999987653   7899999999999999999998 7777


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ++....|.|.||                   |++..+++++||++.++++.+.
T Consensus        79 ~l~~~~l~v~v~-------------------~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          79 DLAKKSLDISVW-------------------DYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             GGGGCEEEEEEE-------------------ECCSSSCCEEEEEEEEETTCCH
T ss_pred             HccccEEEEEee-------------------eCCCCCCCCEEEEEEeCccccC
Confidence            777777777777                   8888899999999999998753

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-18  Score=153.87  Aligned_cols=110  Identities=25%  Similarity=0.538  Sum_probs=94.2

Q ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415         301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ  377 (622)
Q Consensus       301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~  377 (622)
                      |+|++++.|.+..+.|.|.|++|+||+.++ ..+.+||||++++.++..   .++|++++++.||+|||+|.|..+..++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~   79 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE   79 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCT-TSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcC-CCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhh
Confidence            899999999999999999999999999988 689999999999987643   7899999999999999999997677788


Q ss_pred             CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCC--CcceeeEEEEeCCcccc
Q psy1415         378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS--RDDIVGEVFYSLQSFET  430 (622)
Q Consensus       378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~--~d~~iG~~~i~l~~l~~  430 (622)
                      +....|.|.||                   |++..+  ++++||++.++|+++..
T Consensus        80 l~~~~L~i~v~-------------------d~~~~~~~~~~~iG~~~i~l~~~~~  115 (125)
T d2bwqa1          80 FRERMLEITLW-------------------DQARVREEESEFLGEILIELETALL  115 (125)
T ss_dssp             GGGCEEEEEEE-------------------EC-------CEEEEEEEEEGGGCCC
T ss_pred             cCCCEEEEEEE-------------------ECCCCCCCCCeeEEEEEEEchhcCC
Confidence            77777888877                   777653  45699999999999873

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.5e-19  Score=160.25  Aligned_cols=128  Identities=27%  Similarity=0.561  Sum_probs=107.9

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCC-CCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-e
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-V  560 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~-sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v  560 (622)
                      ....|+|++++.|.+..+.|+|.|++|+||+.++..+. +||||++.+.+.+..  +++|++++++.||.|||.|.|. +
T Consensus         5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~--~~kT~v~~~t~nP~wne~f~f~~~   82 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGI   82 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCS--EEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCE--eEeCeeEeCCCCCceeeEEEEeee
Confidence            34579999999999999999999999999999887664 799999999765433  6789999999999999999997 5


Q ss_pred             cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC--CcccchhhhhhcCCC
Q psy1415         561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVCNSPR  612 (622)
Q Consensus       561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~p~  612 (622)
                      ...++....|.|+|||++.++++++||++.|+|.++.  ......|.++...|.
T Consensus        83 ~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~ps  136 (138)
T d1ugka_          83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS  136 (138)
T ss_dssp             CSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred             CHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCCCC
Confidence            6556667789999999999999999999999998653  344556777776664

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.7e-18  Score=159.23  Aligned_cols=110  Identities=35%  Similarity=0.644  Sum_probs=98.7

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      +..|+|.+++.|.+..++|.|.|++|+||+..+ ..+.+||||++++.+++.   .++|++++++.||+|||+|.|. ++
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-v~   86 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VP   86 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CC
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEccccc-CCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-ec
Confidence            457999999999999999999999999999988 688999999999987664   5789999999999999999997 77


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ..++....|.|.||                   |++.++++++||++.+++...
T Consensus        87 ~~~l~~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          87 FEQIQKVQVVVTVL-------------------DYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             GGGGGGCEEEEEEE-------------------ECCSSSCCCEEEEEEEETTCC
T ss_pred             HHHcCccEEEEEEc-------------------ccCCCCCCceeEEEEEecccC
Confidence            78777767777777                   999999999999999999765

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.3e-18  Score=156.35  Aligned_cols=108  Identities=37%  Similarity=0.570  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415         300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH  376 (622)
Q Consensus       300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~  376 (622)
                      +|+|++++.|.+..+.|.|.|++|+||+.++ .++.+||||++++.+++.   ++||++++++.||.|||+|.|. ++..
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~~   78 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCE   78 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCC-CCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEE-ecHH
Confidence            4999999999999999999999999999998 688999999999987664   6789999999999999999997 7777


Q ss_pred             cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415         377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF  428 (622)
Q Consensus       377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l  428 (622)
                      ++....|.|.||                   |++..+++++||++.+++...
T Consensus        79 ~~~~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          79 SLEEISVEFLVL-------------------DSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             SSTTEEEEEEEE-------------------ECCTTSCCEEEEEEEESTTCC
T ss_pred             HhCccEEEEEEE-------------------eCCCCCCCCEEEEEEEcchhC
Confidence            777766777777                   999999999999999999864

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.5e-19  Score=157.67  Aligned_cols=125  Identities=23%  Similarity=0.337  Sum_probs=109.3

Q ss_pred             cCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415         483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA  562 (622)
Q Consensus       483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~  562 (622)
                      ....++|++++.|.+..+.|.|.|++|++|+   ..|.+||||++++.+.... .+++|++++++.||.|||.|.|.+..
T Consensus         9 ~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~-~~~kT~v~~~~~~P~wne~f~f~v~~   84 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVLPLAE   84 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEE-EEEECCCCCCCSSEECSSCEEEECCT
T ss_pred             CCcCCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCc-cceeeeEECCCCCceEeeeEEEEeee
Confidence            3467899999999999999999999999995   3577899999999876443 46789999999999999999999988


Q ss_pred             CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      .++....|.|+|||++.++++++||++.|+|.++. .....+|++|..+.
T Consensus        85 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             hhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            78888889999999999999999999999998654 46678999997753

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=7.3e-20  Score=165.48  Aligned_cols=126  Identities=29%  Similarity=0.527  Sum_probs=103.3

Q ss_pred             CCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEe---------eEeeeeeccCCCCCeeec
Q psy1415         484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRV---------AKKKTHVKKRTLNPVYNE  554 (622)
Q Consensus       484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~---------~~~kT~~~~~tlnP~wne  554 (622)
                      ...|+|.+++.|.  .|.|.|.|++|+||++++..|.+||||++++.+.....         .++||++++++.||.|||
T Consensus         4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            3579999999995  68999999999999999999999999999985432211         235799999999999999


Q ss_pred             EEEEE-ecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415         555 SFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP  611 (622)
Q Consensus       555 ~f~f~-v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p  611 (622)
                      .|.|. +...++....|.|+|||++.++++++||++.|+|.++. +....+||+|....
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            99998 43334556679999999999999999999999998654 45567788887653

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.8e-18  Score=156.22  Aligned_cols=110  Identities=35%  Similarity=0.643  Sum_probs=95.7

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc------------eeEeeeecCCCCCeeec
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ------------KVKTRVLRKTRNPIYNE  366 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~------------~~kT~vi~~t~nP~W~e  366 (622)
                      ..|+|++++.|.  .+.|.|.|++|+||+.++ .++.+||||++++.++..            ++||++++++.||.|||
T Consensus         5 ~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d-~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           5 ITGEIQLQINYD--LGNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCS-SSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             cceEEEEEEEEe--CCEEEEEEEEeECCCCcC-CCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            459999999996  689999999999999998 789999999999965442            36899999999999999


Q ss_pred             eeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415         367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET  430 (622)
Q Consensus       367 ~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~  430 (622)
                      .|.|..+..+++....|.|.||                   |++.++++++||++.++|.++..
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~-------------------d~d~~~~~~~lG~~~i~L~~l~~  126 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVW-------------------DYDRFSSNDFLGEVLIDLSSTSH  126 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEE-------------------EECSSSCEEEEEEEEEETTSCGG
T ss_pred             EEEEeeecccccCCCEEEEEEE-------------------EecCCCCCeeeEEEEEEhHHcCC
Confidence            9999767777776767777777                   89888999999999999999873

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-17  Score=149.31  Aligned_cols=110  Identities=18%  Similarity=0.323  Sum_probs=96.7

Q ss_pred             CCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEccc
Q psy1415         296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGI  373 (622)
Q Consensus       296 ~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~  373 (622)
                      ..++.|+|++++.|.+..+.|.|.|++|++|+.    .+.+||||++++.++..  .++|++++++.||+|||.|.|. +
T Consensus         8 s~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~----~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~-v   82 (138)
T d1wfma_           8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH----DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-L   82 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEECCCC----SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-C
T ss_pred             CCCcCCEEEEEEEECCCCCEEEEEEEEcCCCCC----CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEE-e
Confidence            345679999999999999999999999999943    45789999999987654  7899999999999999999998 6


Q ss_pred             CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ...++....|.|.||                   |++.++++++||++.|+|.++.
T Consensus        83 ~~~~l~~~~L~~~V~-------------------d~~~~~~~~~iG~~~i~L~~l~  119 (138)
T d1wfma_          83 AEEELPTATLTLTLR-------------------TCDRFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             CTTSSTTCEEEEEEE-------------------ECCSSCTTSCSEEEEEESSSSS
T ss_pred             eehhccceEEEEEEe-------------------eecccccceeeeEEEEEhHHcc
Confidence            777777777777777                   8899999999999999999986

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.4e-17  Score=148.44  Aligned_cols=107  Identities=32%  Similarity=0.641  Sum_probs=89.9

Q ss_pred             cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415         299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP  375 (622)
Q Consensus       299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~  375 (622)
                      .+|+|.+++.+  ..+.|.|.|++|+||+.+| .+|.+||||++++.+++.   +++|++++++.||+|||.|.|. +..
T Consensus         2 ~rG~i~l~~~~--~~~~L~V~V~~a~~L~~~d-~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~   77 (132)
T d1a25a_           2 RRGRIYIQAHI--DREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKE   77 (132)
T ss_dssp             TTCEEEEEEEE--SSSEEEEEEEEEESCCCCS-TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCS
T ss_pred             cccEEEEEEEe--cCCEEEEEEEeeeCCCCCC-CCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEE-eEc
Confidence            46999999988  4789999999999999999 789999999999976543   8899999999999999999997 332


Q ss_pred             ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      .+. ...|.|.||                   |++.++++++||++.++|+++.
T Consensus        78 ~~~-~~~L~i~V~-------------------d~d~~~~d~~iG~~~i~l~~l~  111 (132)
T d1a25a_          78 SDK-DRRLSVEIW-------------------DWDLTSRNDFMGSLSFGISELQ  111 (132)
T ss_dssp             GGG-GCEEEEEEE-------------------ECCSSSCCEEEEEEEEEHHHHT
T ss_pred             ccc-CCEEeEEEE-------------------ecCCCCCCcEeEEEEEeHHHcC
Confidence            221 224555555                   9999999999999999999986

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=6.2e-18  Score=153.27  Aligned_cols=111  Identities=31%  Similarity=0.557  Sum_probs=97.8

Q ss_pred             CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccC
Q psy1415         298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT  374 (622)
Q Consensus       298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~  374 (622)
                      ...|+|++++.|.+..+.|.|.|++|+||+..+ ..+.+||||++++.+++.   .++|++++++.||.|||.|.|. ++
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~   81 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD-LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VA   81 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCS-SSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CC
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcC-CCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEE-Ee
Confidence            457999999999999999999999999999888 688999999999976554   6899999999999999999997 77


Q ss_pred             cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      ..++....|.|.|+                   |++.++++++||++.++++.+.
T Consensus        82 ~~~~~~~~l~v~v~-------------------d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          82 PESVENVGLSIAVV-------------------DYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             SGGGGSCCCCCEEE-------------------ECCSSSCCEEEEECCCSSCTTC
T ss_pred             hhhcCCCEEEEEEE-------------------ecCCCCCCcEEEEEEECchHcC
Confidence            77776666666666                   8899999999999999998764

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-17  Score=144.66  Aligned_cols=93  Identities=33%  Similarity=0.491  Sum_probs=79.4

Q ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      +..|.|.|+|++|++|+.++ .+|.+||||++++  +++.++|++++++.||+|+|.|.|.+..+.    ..|.|.|   
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d-~~g~~Dpyv~v~~--~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~~L~i~V---   72 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAAD-FSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTV---   72 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSS-SSSCCCEEEEEEE--TTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEE---
T ss_pred             CccEEEEEEEEEeECCCCCC-CCCCcCeEEEEEc--CCeEEEEEeeCCceeEEEEEEEEEEEeccC----ceeEEEE---
Confidence            35688999999999999998 7899999999999  778999999999999999999999732221    2445555   


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                      ||++..+++++||++.++|+++.
T Consensus        73 ----------------~d~~~~~~d~~lG~~~i~l~~l~   95 (126)
T d2ep6a1          73 ----------------FDEDGDKPPDFLGKVAIPLLSIR   95 (126)
T ss_dssp             ----------------EEEETTEEEEECCBCEEEGGGCC
T ss_pred             ----------------EEccCCcCcceEEEEEEEHHHCC
Confidence                            49999889999999999999986

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.8e-18  Score=148.81  Aligned_cols=106  Identities=23%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             CCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       497 ~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      +..|.|+|.|++|++|++++..|.+||||++.+  ++.   +++|++++++.||.|||.|.|.+...  . ..|.|+|||
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~--~~~---~~~T~~~~~t~nP~wne~f~f~v~~~--~-~~L~i~V~d   74 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLEL--GND---RLQTHTVYKNLNPEWNKVFTFPIKDI--H-DVLEVTVFD   74 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE--TTE---EEECCCCSSCSSCCCCEEEEEEESCT--T-CEEEEEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc--CCe---EEEEEeeCCceeEEEEEEEEEEEecc--C-ceeEEEEEE
Confidence            356899999999999999999999999999998  332   57899999999999999999999743  2 359999999


Q ss_pred             cCCCCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP  611 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p  611 (622)
                      ++.+++|++||++.|+|.++ ..+..+|+.|....
T Consensus        75 ~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~l~~~~  108 (126)
T d2ep6a1          75 EDGDKPPDFLGKVAIPLLSI-RDGQPNCYVLKNKD  108 (126)
T ss_dssp             EETTEEEEECCBCEEEGGGC-CSSCCEECCCBCSC
T ss_pred             ccCCcCcceEEEEEEEHHHC-CCCCceEEEccccC
Confidence            99999999999999999755 34456888876543

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.6e-16  Score=141.23  Aligned_cols=113  Identities=22%  Similarity=0.394  Sum_probs=87.5

Q ss_pred             cEEEEEEEeecCCCC--CCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCC-CCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415         500 NRFTIVVLKARNLPK--MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEVPADNLDSVSLELLLLD  576 (622)
Q Consensus       500 g~L~V~I~~A~~L~~--~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~t-lnP~wne~f~f~v~~~~l~~~~L~i~V~D  576 (622)
                      ..|+|.|++|++|+.  .+.+|.+||||++++.+......+++|++++++ +||.|||.|.|.+..+..  ..|.|+|||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~--~~L~~~V~D   81 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVED   81 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGG--CEEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchh--ceEEEEEEE
Confidence            479999999999975  456788999999999754333346788887654 799999999999875543  359999999


Q ss_pred             cCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCcee
Q psy1415         577 WDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIA  616 (622)
Q Consensus       577 ~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~  616 (622)
                      ++.+++|++||++.|+|..+. ++ .+|++|.+..|+.+.
T Consensus        82 ~d~~~~d~~iG~~~i~l~~l~-~g-~~~~~L~~~~g~~~~  119 (131)
T d1qasa2          82 YDSSSKNDFIGQSTIPWNSLK-QG-YRHVHLLSKNGDQHP  119 (131)
T ss_dssp             CCTTTCCEEEEEEEEEGGGBC-CE-EEEEEEECTTSCEEE
T ss_pred             ecCCCCCcEEEEEEEEEeccC-CC-CEEEECCCCCcCCCC
Confidence            999999999999999996543 33 468999988887653

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=140.91  Aligned_cols=116  Identities=26%  Similarity=0.387  Sum_probs=92.8

Q ss_pred             ccEEEEEEEeecCCCCC---CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415         499 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL  575 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~---d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~  575 (622)
                      .+.|+|.|++|+||+..   |..|.+||||++.+.+.  ...+++|+++.++.||.|||.|.|.+...  ....|.|+||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~f~i~~~--~~~~L~v~V~   77 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT--PDSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS--TTCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc--ccceeEeeecCCCccceeceeeeecccCc--ccCcEEEEEE
Confidence            46899999999999874   44689999999998432  22367899999999999999999998633  3446999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCceeeEE
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQIAEWL  619 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i~~w~  619 (622)
                      |++.. +|++||++.|+|.++. +.....||.|.....+.+.-..
T Consensus        78 d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l  121 (126)
T d1rlwa_          78 DANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSL  121 (126)
T ss_dssp             ECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred             ECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEE
Confidence            99876 5899999999998654 5677789999877666665443

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=2.8e-16  Score=140.54  Aligned_cols=92  Identities=28%  Similarity=0.386  Sum_probs=75.9

Q ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415         312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF  390 (622)
Q Consensus       312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~  390 (622)
                      ..|.|.|+|++|++|+..+ .++++||||++++  ++..++|++++ ++.||+|||+|.|. +...   ...|       
T Consensus         8 p~G~L~V~v~~a~~L~~~d-~~g~~Dpyv~v~~--~~~~~~t~~~~~~~~nP~Wne~f~f~-v~~~---~~~L-------   73 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDAD-FLNNMDPYVQLTC--RTQDQKSNVAEGMGTTPEWNETFIFT-VSEG---TTEL-------   73 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCC-SSCSSCCCEEEES--SSCEEECCCCTTCCSSCEEEEEEEEE-EESS---CCEE-------
T ss_pred             CcEEEEEEEEEeeCCCCCC-CCCCCCccEEEEE--eeeeEEEEEEecCCCcEEEeeEEEEE-EcCc---cceE-------
Confidence            3467899999999999998 7899999999999  66788888886 68999999999997 3211   1234       


Q ss_pred             ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                  .|+|||++..++|++||++.++|.++.
T Consensus        74 ------------~v~V~d~d~~~~d~~iG~~~i~L~~l~  100 (136)
T d1wfja_          74 ------------KAKIFDKDVGTEDDAVGEATIPLEPVF  100 (136)
T ss_dssp             ------------EEEECCSSSCTTTCCSEEEEEESHHHH
T ss_pred             ------------EEEEEEecCCCCCCEEEEEEEEhHHhc
Confidence                        445559999999999999999999886

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=2.5e-16  Score=140.87  Aligned_cols=107  Identities=22%  Similarity=0.382  Sum_probs=87.8

Q ss_pred             cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415         496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLL  574 (622)
Q Consensus       496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V  574 (622)
                      ..+.|.|+|.|++|++|+..+..|.+||||++.+  ++.   .++|++++ ++.||.|||.|.|.+....   ..|.|+|
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~--~~~---~~~t~~~~~~~~nP~Wne~f~f~v~~~~---~~L~v~V   77 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC--RTQ---DQKSNVAEGMGTTPEWNETFIFTVSEGT---TELKAKI   77 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEES--SSC---EEECCCCTTCCSSCEEEEEEEEEEESSC---CEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEE--eee---eEEEEEEecCCCcEEEeeEEEEEEcCcc---ceEEEEE
Confidence            3456899999999999999999999999999998  332   45677776 5899999999999998532   3499999


Q ss_pred             EEcCCCCCCceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415         575 LDWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVCNS  610 (622)
Q Consensus       575 ~D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~  610 (622)
                      ||++.+++|++||++.|+|.++.  +....+|+.|...
T Consensus        78 ~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~  115 (136)
T d1wfja_          78 FDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD  115 (136)
T ss_dssp             CCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET
T ss_pred             EEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCC
Confidence            99999999999999999997543  3444679888653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.59  E-value=3.2e-15  Score=133.48  Aligned_cols=107  Identities=20%  Similarity=0.348  Sum_probs=87.6

Q ss_pred             ccEEEEEEEeecCCCCCC-----------CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCc
Q psy1415         499 ANRFTIVVLKARNLPKMD-----------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS  567 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d-----------~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~  567 (622)
                      .|.|+|.|++|++|++.+           ..+.+||||++.+  ++..  ..+|.++.++.||.|||.|.|++...    
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~~--~~~T~~~~~t~~P~Wne~f~f~v~~~----   76 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSR--IGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEE--EEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCCc--CcEeeEEcCCCCccCccEEEEEEecC----
Confidence            589999999999998754           4678899999999  4433  45789999999999999999999742    


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEECCCCCC---CcccchhhhhhcCCCCce
Q psy1415         568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSS---GTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~~p~~~i  615 (622)
                      ..|.|+|||++.+++|++||.+.|+|.++.   +...+.|++|.  |.+++
T Consensus        77 ~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v  125 (136)
T d1gmia_          77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKV  125 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEE
T ss_pred             CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEE
Confidence            359999999999999999999999997543   23467799885  44544

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.8e-15  Score=131.96  Aligned_cols=94  Identities=19%  Similarity=0.406  Sum_probs=73.9

Q ss_pred             CCEEEEEEEEeeCCCCCCC--CCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415         313 ENVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS  389 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~--~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d  389 (622)
                      +++|.|+|++|+||+....  .+|.+||||++++.+.. ++++|++++++.||.|||+|.|. +.  ......|.|.|| 
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~-i~--~~~~~~L~v~V~-   77 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LD--PNQENVLEITLM-   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-EC--TTSCCEEEEEEE-
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeec-cc--CcccCcEEEEEE-
Confidence            5689999999999987420  35789999999995433 38899999999999999999997 32  222334555555 


Q ss_pred             eccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         390 FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       390 ~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                        |++.. +|++||++.++|+++.
T Consensus        78 ------------------d~d~~-~d~~lG~~~i~L~~l~   98 (126)
T d1rlwa_          78 ------------------DANYV-MDETLGTATFTVSSMK   98 (126)
T ss_dssp             ------------------ECCSS-CCEEEEEEEEEGGGSC
T ss_pred             ------------------ECCCC-CCCeEEEEEEEHHHcc
Confidence                              87764 6899999999999986

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.9e-15  Score=130.40  Aligned_cols=90  Identities=29%  Similarity=0.375  Sum_probs=76.1

Q ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415         313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR  392 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~  392 (622)
                      .+.|.|+|++|++++..+ ..+.+||||++.+  +++.++|++++++.||.|||.|.|. +...    ..|.|.||    
T Consensus         5 ~~~L~v~v~~A~~~~~~~-~~~~~dpyv~v~~--~~~~~kT~v~~~t~nP~wne~f~f~-~~~~----~~l~~~V~----   72 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKK-NWFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVI-VTPV----SKLHFRVW----   72 (133)
T ss_dssp             CEEEEEEEEEEEECCCC---CCCCCEEEEEEE--TTEEEECCCCSSCSSCEEEEEEEEE-ECTT----CEEEEEEE----
T ss_pred             ceEEEEEEEEeECCCcCC-CCCCcCeEEEEEE--CCeEEeeEEEEecccEEEcceEEEE-EEec----ceeEEEEE----
Confidence            467999999999999887 6788999999999  8889999999999999999999997 4332    24555555    


Q ss_pred             CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                     |++.+++|++||++.++|.++.
T Consensus        73 ---------------d~d~~~~d~~iG~~~i~L~~l~   94 (133)
T d2nq3a1          73 ---------------SHQTLKSDVLLGTAALDIYETL   94 (133)
T ss_dssp             ---------------ECCSSSCCEEEEEEEEEHHHHH
T ss_pred             ---------------EccCCCCCceEEEEEEEHHHhh
Confidence                           9999999999999999999885

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.57  E-value=6.9e-15  Score=131.29  Aligned_cols=94  Identities=20%  Similarity=0.348  Sum_probs=75.9

Q ss_pred             CCEEEEEEEEeeCCCCCC----------CCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCc
Q psy1415         313 ENVLVVTVIKCRDLFIKD----------TPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGS  381 (622)
Q Consensus       313 ~~~L~V~vi~a~~L~~~d----------~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~  381 (622)
                      +|.|.|.|++|++|++.+          ...+.+||||++++  +++ ..+|++++++.||.|||.|.|. +..    ..
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~~~~~T~~~~~t~~P~Wne~f~f~-v~~----~~   77 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTD-VCN----GR   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EEE----EC
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCCcCcEeeEEcCCCCccCccEEEEE-Eec----CC
Confidence            578999999999998642          13567899999999  765 6789999999999999999997 321    12


Q ss_pred             EEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415         382 TLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG  432 (622)
Q Consensus       382 ~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~  432 (622)
                      .|.|.||                   |++.+++|++||.+.++|+++...+
T Consensus        78 ~l~i~V~-------------------d~~~~~~d~~iG~~~i~l~~l~~~~  109 (136)
T d1gmia_          78 KIELAVF-------------------HDAPIGYDDFVANCTIQFEELLQNG  109 (136)
T ss_dssp             EEEEEEE-------------------ECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred             ceEEEEE-------------------EecCCCCceeEEEEEEEHHHhhhcC
Confidence            4555555                   9888899999999999999997443

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.6e-14  Score=126.66  Aligned_cols=94  Identities=24%  Similarity=0.357  Sum_probs=71.1

Q ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEeCC---CceeEeeeecCC-CCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415         314 NVLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPD---KQKVKTRVLRKT-RNPIYNEEFTFTGITPHQLKGSTLHFVVF  388 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d-~~~~~sDPyv~v~l~~~---~~~~kT~vi~~t-~nP~W~e~f~f~~~~~~~l~~~~L~~~V~  388 (622)
                      .+|.|.|++|++|+..+ ..++++||||++++.+.   ...++|++++++ +||.|||+|.|.+.. .+.  ..|.|.||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~-~~~--~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTV-PDL--ALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESC-GGG--CEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEc-chh--ceEEEEEE
Confidence            47999999999997543 15778999999998642   238899987655 799999999997333 322  24555555


Q ss_pred             eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                         |++..+++++||++.++|+.+.
T Consensus        81 -------------------D~d~~~~d~~iG~~~i~l~~l~  102 (131)
T d1qasa2          81 -------------------DYDSSSKNDFIGQSTIPWNSLK  102 (131)
T ss_dssp             -------------------ECCTTTCCEEEEEEEEEGGGBC
T ss_pred             -------------------EecCCCCCcEEEEEEEEEeccC
Confidence                               9999999999999999999886

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-14  Score=126.90  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415         499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD  578 (622)
Q Consensus       499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d  578 (622)
                      .+.|.|+|++|++++..+..+.+||||++.+  ++.   .++|++++++.||.|||.|.|++...    ..|.|+|||++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~--~~~---~~kT~v~~~t~nP~wne~f~f~~~~~----~~l~~~V~d~d   75 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVTPV----SKLHFRVWSHQ   75 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEE--TTE---EEECCCCSSCSSCEEEEEEEEEECTT----CEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEE--CCe---EEeeEEEEecccEEEcceEEEEEEec----ceeEEEEEEcc
Confidence            3679999999999999888899999999998  443   56899999999999999999998742    35999999999


Q ss_pred             CCCCCceeEEEEECCCC
Q psy1415         579 RVTKNEVIGRLDLGGDK  595 (622)
Q Consensus       579 ~~~~d~~LG~v~i~L~~  595 (622)
                      .+++|++||++.|+|.+
T Consensus        76 ~~~~d~~iG~~~i~L~~   92 (133)
T d2nq3a1          76 TLKSDVLLGTAALDIYE   92 (133)
T ss_dssp             SSSCCEEEEEEEEEHHH
T ss_pred             CCCCCceEEEEEEEHHH
Confidence            99999999999999864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=7.3e-14  Score=122.83  Aligned_cols=97  Identities=14%  Similarity=0.217  Sum_probs=78.8

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415         500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR  579 (622)
Q Consensus       500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~  579 (622)
                      +.|.|+|.+|++|.+++   ..||||++.+  ++.   +.+|.+++ +.||.|||.|.|.+...   +..|.|+|||++.
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~--~~~---k~~T~~~k-~~nP~Wne~f~f~v~~~---~~~L~v~V~d~~~   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QNV---KSTTIAVR-GSQPSWEQDFMFEINRL---DLGLTVEVWNKGL   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEE--TTE---EEECCCEE-SSSCEEEEEEEEEECCC---SSEEEEEEEECCS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEe--CCE---EEEEEEec-CCCCeEEEEEEEeeccc---cceEEEEEEeCCC
Confidence            57999999999999876   5799999999  332   66787775 56999999999999754   2359999999987


Q ss_pred             CCCCceeEEEEECCCCCC---Ccccchhhhhhc
Q psy1415         580 VTKNEVIGRLDLGGDKSS---GTALTHWTDVCN  609 (622)
Q Consensus       580 ~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~  609 (622)
                      . +|++||++.|+|.++.   .....+||.|..
T Consensus        70 ~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          70 I-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             S-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             c-CCcceEEEEEEehhhccCCCCCCCeeEECCc
Confidence            6 5899999999998654   244567999964

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.6e-13  Score=119.27  Aligned_cols=85  Identities=22%  Similarity=0.316  Sum_probs=68.8

Q ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      +.|.|+|.+|++|..++    +.||||++.+  ++.+.+|.++++ .||+|||.|.|.+..+.    ..|.|.||     
T Consensus         2 ~~L~V~v~~a~~l~~~~----~~dpYv~l~~--~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~----~~L~v~V~-----   65 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE----KFNTYVTLKV--QNVKSTTIAVRG-SQPSWEQDFMFEINRLD----LGLTVEVW-----   65 (128)
T ss_dssp             EEEEEEEEEEECSSCGG----GCEEEEEEEE--TTEEEECCCEES-SSCEEEEEEEEEECCCS----SEEEEEEE-----
T ss_pred             eEEEEEEEEEECCCCCC----CcCeEEEEEe--CCEEEEEEEecC-CCCeEEEEEEEeecccc----ceEEEEEE-----
Confidence            46999999999998876    4799999999  777899998865 59999999999733221    24555555     


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                    |++.. +|++||++.|+|+++.
T Consensus        66 --------------d~~~~-~d~~lG~~~I~L~~l~   86 (128)
T d2cjta1          66 --------------NKGLI-WDTMVGTVWIPLRTIR   86 (128)
T ss_dssp             --------------ECCSS-CEEEEEEEEEEGGGSC
T ss_pred             --------------eCCCc-CCcceEEEEEEehhhc
Confidence                          88775 5899999999999997

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.8e-12  Score=109.19  Aligned_cols=103  Identities=21%  Similarity=0.350  Sum_probs=73.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEEe---CCeEeeEeeeeeccCCCCCeeecE-EEE-EecCCCCCccEEEEEEE
Q psy1415         501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLY---KGQRVAKKKTHVKKRTLNPVYNES-FVF-EVPADNLDSVSLELLLL  575 (622)
Q Consensus       501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~---~~~~~~~~kT~~~~~tlnP~wne~-f~f-~v~~~~l~~~~L~i~V~  575 (622)
                      .|+|.|++|++|+..    .+||||++++.+   +.....+.++.+..+++||.|||. |.| .+..+++  ..|.|.||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEE
Confidence            589999999999865    379999999964   122222333444567899999975 444 3443343  35999999


Q ss_pred             EcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415         576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i  615 (622)
                      |++    +++||++.|+|+ ...+++ +|.+|.+.-++.+
T Consensus        76 D~d----~~~lG~~~ipl~-~l~~Gy-R~vpL~~~~g~~l  109 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPIN-ALNSGY-HHLCLHSESNMPL  109 (122)
T ss_dssp             ETT----TEEEEEEEEEGG-GBCCEE-EEEEEECTTCCEE
T ss_pred             CCC----CCEEEEEEEEcc-cCcCCc-eEEEccCCCcCCC
Confidence            975    789999999995 434443 6678888777765

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=4.7e-12  Score=110.40  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415         502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT  581 (622)
Q Consensus       502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~  581 (622)
                      |+|.|....--+.....|.+||||++.+.+.......++|.++++|+||.|||+|.|.|...    ..|.|.|||+|   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~----~~l~i~V~d~d---   77 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG----RVIQIVLMRAA---   77 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT----CEEEEEEEEET---
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc----cEEEEEEEEcc---
Confidence            44444333222334457899999999996532222245788999999999999999998632    35999999986   


Q ss_pred             CCceeEEEEECCCCC------CCcccchhhhhhcCCCCce
Q psy1415         582 KNEVIGRLDLGGDKS------SGTALTHWTDVCNSPRRQI  615 (622)
Q Consensus       582 ~d~~LG~v~i~L~~~------~~~~~~~W~~L~~~p~~~i  615 (622)
                       ++++|.+.|++..+      .+...+.|++|.  |.+.|
T Consensus        78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl  114 (123)
T d1bdya_          78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKV  114 (123)
T ss_dssp             -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEE
T ss_pred             -ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEE
Confidence             78999999998633      234556798885  55555

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.5e-11  Score=107.10  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             EEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415         317 VVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY  393 (622)
Q Consensus       317 ~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~  393 (622)
                      .|.+..+..++.   ..+.+||||+|++.+..   ..++|+++++|+||+|||+|.|. +..    ...|.|.||     
T Consensus         8 ~~~~~~~~~~~~---~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~-----   74 (123)
T d1bdya_           8 SFNSYELGSLQA---EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLM-----   74 (123)
T ss_dssp             EEEEEECCTTCC---CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEE-----
T ss_pred             EEEEeecccCCC---CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEE-----
Confidence            334444444433   47889999999995432   25779999999999999999997 432    234666666     


Q ss_pred             CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                                    |+|    ++++|.+.+++..+.
T Consensus        75 --------------d~d----d~~~g~~~i~l~~l~   92 (123)
T d1bdya_          75 --------------RAA----EDPMSEVTVGVSVLA   92 (123)
T ss_dssp             --------------EET----TEEEEEEEEEHHHHH
T ss_pred             --------------Ecc----ccccCccEEehhhee
Confidence                          764    689999999999886

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.9e-10  Score=97.10  Aligned_cols=85  Identities=26%  Similarity=0.438  Sum_probs=60.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC---C-ceeEeee--ecCCCCCeeece-eEEcccCcccCCCcEEEEEE
Q psy1415         315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---K-QKVKTRV--LRKTRNPIYNEE-FTFTGITPHQLKGSTLHFVV  387 (622)
Q Consensus       315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~---~-~~~kT~v--i~~t~nP~W~e~-f~f~~~~~~~l~~~~L~~~V  387 (622)
                      .|.|.|++|++|+.+     ++||||+|++.+.   . .+++|++  ..+++||.|||. |.|..+...++  ..|.|.|
T Consensus         2 tl~V~Visaq~L~~~-----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSER-----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCSS-----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred             EEEEEEEEeeCCCCC-----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEE
Confidence            588999999999765     3799999998631   1 2455554  367899999976 44432333333  3566666


Q ss_pred             EeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415         388 FSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE  429 (622)
Q Consensus       388 ~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~  429 (622)
                      |                   |++    +++||++.++|+.+.
T Consensus        75 ~-------------------D~d----~~~lG~~~ipl~~l~   93 (122)
T d2zkmx2          75 M-------------------EEG----NKFLGHRIIPINALN   93 (122)
T ss_dssp             E-------------------ETT----TEEEEEEEEEGGGBC
T ss_pred             E-------------------CCC----CCEEEEEEEEcccCc
Confidence            6                   754    789999999999986