Psyllid ID: psy14199

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQKRI
cccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccEEEEEEccccccccccccEEEEEEEEcccHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccEEEEEEEcccccEEEEEEEEEEHHHHHHcccccccccEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHcccccEEEccccccEEEEEccccccHHHHHccccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHccccccEEEEccccccccccEEEEccHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEEEEEccccccEEEEEEccccccccccccccccccEEEcccccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccEEEEccccccEEEccc
cccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHcHEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEcccEEcHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHcEccccccccccccEEEEEccccccEccccccccEEEEEEEccccEEEEEEEEccccccccccccccccccEEEHHHccccccHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHccccEEEccccccEEEEEccccccHHHHHHccccEEEcccccccEEEHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccEEEEccHHHHHcccccccEEEEEEEcccEEEccccccccEEEEEEEEEEEEccccEEEEEEcccEEEEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccEEEEccccccccccccHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHEEEEEEEEEccccccEEEEccc
magdssfseFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRfeynddergetdplyKVVVSnedgikksdrsniflidhawtysittarsdlysnpnlLERMSnlmgvdvdsdtddKVEQVFHEMWKYnntysvkstadgdtllPVWYIMDEfgsaiqhsdepnmrivpfiylnegiaysiLYPIIIKILIFVKFCYILGSLILTIDYvesyqdpdirkvllhpwfpnsycevdfnqiepgaeyfssghieehlpssptvtniitdeDKILKVYSeykyvdfnqiepgaeyfssghieehlpssptvtdiitdeDKILKVYSEYKYVsenlthprfvivdneeEADILWYTHHFKDfktlaeetptkfvnqfpFEYILTIKDLLSIVCRRnskdiekttlqtspdwlpttYNLKTELLKFMSYYQNREKknlnnlwiikpfnlarsldsyitDNINMVIKSALTGPKIIQKYIEnpilfyrddlsgkvkfDVRYVVLVKSVkplkvylyknfflrddlsgkvkfDVRYVVLVKSVKPLKVYLYKNFFLrfankpfelskfddyeihftvmnyddktplckmlcsdfkiefekqnpnenwdhieskinpsenwdHIESKIVTMFRSVFEaatmkdpplglghnvqsrSLYAADLMLTKqnnsyhvqkri
MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDdergetdplykVVVSnedgikksdrsniFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKynntysvkstADGDTLLPVWYIMDEFGsaiqhsdepNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHlpssptvtniiTDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLpssptvtdiiTDEDKILKVYSEYKyvsenlthprfvIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDiekttlqtspdwlpttYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVksvkplkvylyknfflrddlsgkvkFDVRYVVLVksvkplkvyLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATmkdpplglgHNVQSRSLYAADLMLtkqnnsyhvqkri
MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGiaysilypiiikiliFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRyvvlvksvkplkvylykNFFLRDDLSGKVKFDVRyvvlvksvkplkvylykNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQKRI
***************QQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQN**ENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLML*************
****SSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRF************LYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVK******TLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEV**NQI****************************************************************************DKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQKRI
*********FLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNN********
**GDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQKR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQKRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query677 2.2.26 [Sep-21-2011]
Q14166644 Tubulin--tyrosine ligase- yes N/A 0.818 0.860 0.348 1e-114
Q3UDE2639 Tubulin--tyrosine ligase- yes N/A 0.809 0.857 0.349 1e-114
Q09512662 Tubulin--tyrosine ligase- yes N/A 0.822 0.841 0.308 5e-92
A8XXC0672 Tubulin--tyrosine ligase- N/A N/A 0.827 0.833 0.300 6e-88
Q8CHB8 1328 Tubulin polyglutamylase T no N/A 0.218 0.111 0.341 3e-11
Q6EMB2 1281 Tubulin polyglutamylase T no N/A 0.218 0.115 0.341 3e-11
Q5R978 1299 Tubulin polyglutamylase T no N/A 0.218 0.113 0.341 3e-11
Q6EEF3 1299 Tubulin polyglutamylase T N/A N/A 0.218 0.113 0.341 3e-11
Q3SZH6461 Probable tubulin polyglut no N/A 0.358 0.527 0.243 8e-11
Q641W7461 Probable tubulin polyglut no N/A 0.342 0.503 0.251 9e-11
>sp|Q14166|TTL12_HUMAN Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2 Back     alignment and function desciption
 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/682 (34%), Positives = 361/682 (52%), Gaps = 128/682 (18%)

Query: 3   GDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDD------ 56
           G  + +EF   H   L +  +P  +W  L  KL++ +FDAG  F +++ E  ++      
Sbjct: 24  GAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDEAA 83

Query: 57  ---ERGETDP----LYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLE 109
               + + +P     YKV+V+ E G++ +  ++IFLIDHAWT  +  AR  L   P LL 
Sbjct: 84  REVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGLLH 143

Query: 110 RMSNLMGVDVDSD--TDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQ 167
           RM+NLMG++   +  + + V  V  EMWK+N TY + +    +  +PVWYIMDEFGS IQ
Sbjct: 144 RMANLMGIEFHGELPSTEAVALVLEEMWKFNQTYQL-AHGTAEEKMPVWYIMDEFGSRIQ 202

Query: 168 HSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIR 227
           H+D P+    PF Y+ + +AY++L+P+            +     +T D+     DP IR
Sbjct: 203 HADVPSFATAPFFYMPQQVAYTLLWPLRD----------LDTGEEVTRDFAYGETDPLIR 252

Query: 228 KVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYK 287
           K +L PW P    ++     EP AE++ +                I +E+K         
Sbjct: 253 KCMLLPWAPTDMLDLSSCTPEPPAEHYQA----------------ILEENK--------- 287

Query: 288 YVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVI 347
                               E LP    +  ++     I KVY++ + V+ +LTHPRF +
Sbjct: 288 --------------------EKLPLD--INPVVHPHGHIFKVYTDVQQVASSLTHPRFTL 325

Query: 348 VDNEEEADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKT 407
             +E +ADIL+   HFKD++ L++E P   +NQFP E +LT+KD L+ + RR        
Sbjct: 326 TQSEADADILFNFSHFKDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRAGGP---- 381

Query: 408 TLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMV 467
                P WLP T+NL+TEL +F+SY+Q RE+   +N WI KP+NLARSLD+++T +++ +
Sbjct: 382 ---EGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSI 438

Query: 468 IKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDL 527
           I+   + PK++ KYIE+P+LF R+D+ GKVKFD+RY+VL++SV+PL++++Y         
Sbjct: 439 IRHRESTPKVVSKYIESPVLFLREDV-GKVKFDIRYIVLLRSVRPLRLFVY--------- 488

Query: 528 SGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPL 587
                 DV                   F+LRF+N+ F L+  DDYE HFTVMNYD    L
Sbjct: 489 ------DV-------------------FWLRFSNRAFALNDLDDYEKHFTVMNYDPDVVL 523

Query: 588 CKMLCSDFKIEFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLG 647
            ++ C +F  EFEKQ P                W  ++++I   F  +F+ A  K PPLG
Sbjct: 524 KQVHCEEFIPEFEKQYPE-------------FPWTDVQAEIFRAFTELFQVACAKPPPLG 570

Query: 648 LGHNVQSRSLYAADLMLTKQNN 669
           L     SR++YA DLML   N 
Sbjct: 571 LCDYPSSRAMYAVDLMLKWDNG 592

Homo sapiens (taxid: 9606)
>sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1 Back     alignment and function description
>sp|Q09512|TTL12_CAEEL Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans GN=ttll-12 PE=4 SV=1 Back     alignment and function description
>sp|A8XXC0|TTL12_CAEBR Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae GN=ttll-12 PE=4 SV=2 Back     alignment and function description
>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3 Back     alignment and function description
>sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3 Back     alignment and function description
>sp|Q5R978|TTLL5_PONAB Tubulin polyglutamylase TTLL5 OS=Pongo abelii GN=TTLL5 PE=2 SV=1 Back     alignment and function description
>sp|Q6EEF3|TTLL5_CHLAE Tubulin polyglutamylase TTLL5 OS=Chlorocebus aethiops GN=TTLL5 PE=2 SV=2 Back     alignment and function description
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2 SV=1 Back     alignment and function description
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus GN=Ttll9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
48095945616 PREDICTED: tubulin--tyrosine ligase-like 0.825 0.907 0.442 1e-147
380026005616 PREDICTED: tubulin--tyrosine ligase-like 0.825 0.907 0.443 1e-147
383854304615 PREDICTED: tubulin--tyrosine ligase-like 0.834 0.918 0.433 1e-146
322795612616 hypothetical protein SINV_01389 [Solenop 0.822 0.904 0.437 1e-145
340714145615 PREDICTED: tubulin--tyrosine ligase-like 0.825 0.908 0.433 1e-145
350417418618 PREDICTED: tubulin--tyrosine ligase-like 0.825 0.904 0.422 1e-143
357610266610 hypothetical protein KGM_19938 [Danaus p 0.833 0.924 0.420 1e-143
332027010615 Tubulin--tyrosine ligase-like protein 12 0.822 0.905 0.428 1e-142
125807249627 GA13769 [Drosophila pseudoobscura pseudo 0.824 0.889 0.408 1e-140
307179082612 Tubulin--tyrosine ligase-like protein 12 0.821 0.908 0.431 1e-139
>gi|48095945|ref|XP_394564.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/667 (44%), Positives = 397/667 (59%), Gaps = 108/667 (16%)

Query: 1   MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGE 60
           M G   F+ FL +H+ QL    +P  FW+ L KKLQ   FD+G  F + R +Y+D ER  
Sbjct: 1   MDGIGLFNTFLQSHRPQLEMSGVPKIFWQVLFKKLQCQTFDSGMVFQLARIDYDDAERSS 60

Query: 61  TDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVD 120
            DP++K+ VS ++GI   D SNI+LIDHAWTY I  A+ +L + P LL+RM +LMG ++D
Sbjct: 61  RDPIWKLFVSYKNGISAQDPSNIYLIDHAWTYDIKNAKQNLSTIPGLLDRMCSLMGFEID 120

Query: 121 SDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFI 180
           S+ D+K++ V +EMWKYN ++S+ S +  D + PVWYIMDE GSAI HSD+PN R VPF+
Sbjct: 121 SEEDEKIDFVLNEMWKYNQSFSLNSGSIEDRM-PVWYIMDEVGSAINHSDDPNFRTVPFL 179

Query: 181 YLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESY-QDPDIRKVLLHPWFPNSY 239
           YL EGI Y++L+PI  K + + +         +T D+VE    D   R+ LL PW   S+
Sbjct: 180 YLPEGITYTLLFPI--KDVDYDE--------EVTRDFVEGQTNDQKKRRALLLPWIETSF 229

Query: 240 CEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAE 299
                                  L  S                        F Q+EP   
Sbjct: 230 -----------------------LGES------------------------FAQVEPDEN 242

Query: 300 YFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWY 359
           YF +GHI E LP          D +  LKV+S+Y YV+E L    F IV+NE+ ADILWY
Sbjct: 243 YFLAGHIRESLPEKVDPQLPQRDRNTKLKVFSQYTYVNEYLNDSAFEIVNNEDHADILWY 302

Query: 360 THHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNS--KDIEKTTLQTSPDWLP 417
           T HFK++K L+  +P  FVNQFPFE +LTIKDLLSIVCRR +  K  +  TL+T P WLP
Sbjct: 303 TSHFKEYKELSIRSPNVFVNQFPFENVLTIKDLLSIVCRRKAGKKSYDPGTLETYPTWLP 362

Query: 418 TTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKI 477
           TTYNL  EL++F++Y++ RE   L+N WI KP+NLAR LD++IT N+  +++   TGPKI
Sbjct: 363 TTYNLSIELVQFVTYFEQRESMGLDNHWICKPWNLARGLDTHITKNLFHILRLPSTGPKI 422

Query: 478 IQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRY 537
            QKYI NP+L+ R ++ GKVKFDVRY+V++KSV PL+V++YKNF                
Sbjct: 423 AQKYITNPVLYERLEI-GKVKFDVRYIVMLKSVNPLRVFVYKNF---------------- 465

Query: 538 VVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKI 597
                             FLRFANK F L+ FD YE HFTVMNY + TPLC + C+DF I
Sbjct: 466 ------------------FLRFANKEFALNNFDVYEQHFTVMNYSEDTPLCHVKCADFII 507

Query: 598 EFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSL 657
           E+E+Q P+ +W             +H+E KI+ MFR +FEAA  + PP G+  +  SR++
Sbjct: 508 EWERQYPDFSWR------------EHVEPKILHMFREIFEAAIAEKPPRGIAESSISRAV 555

Query: 658 YAADLML 664
           YA DL+L
Sbjct: 556 YAIDLIL 562

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380026005|ref|XP_003696752.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Apis florea] Back     alignment and taxonomy information
>gi|383854304|ref|XP_003702661.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322795612|gb|EFZ18291.1| hypothetical protein SINV_01389 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340714145|ref|XP_003395592.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350417418|ref|XP_003491413.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|357610266|gb|EHJ66903.1| hypothetical protein KGM_19938 [Danaus plexippus] Back     alignment and taxonomy information
>gi|332027010|gb|EGI67106.1| Tubulin--tyrosine ligase-like protein 12 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|125807249|ref|XP_001360322.1| GA13769 [Drosophila pseudoobscura pseudoobscura] gi|54635494|gb|EAL24897.1| GA13769 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|307179082|gb|EFN67554.1| Tubulin--tyrosine ligase-like protein 12 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
UNIPROTKB|F1NZA1627 TTLL12 "Uncharacterized protei 0.292 0.315 0.452 5.7e-117
FB|FBgn0033225626 CG1550 [Drosophila melanogaste 0.345 0.373 0.523 7.8e-114
UNIPROTKB|F1SJR7652 TTLL12 "Uncharacterized protei 0.293 0.305 0.440 1.9e-110
UNIPROTKB|F1N5K2655 TTLL12 "Uncharacterized protei 0.293 0.303 0.435 1.3e-109
ZFIN|ZDB-GENE-040426-697625 ttll12 "tubulin tyrosine ligas 0.292 0.316 0.432 1e-103
WB|WBGene00008405662 ttll-12 [Caenorhabditis elegan 0.329 0.336 0.381 5.9e-75
UNIPROTKB|Q09512662 ttll-12 "Tubulin--tyrosine lig 0.329 0.336 0.381 5.9e-75
UNIPROTKB|F1PQD3682 TTLL12 "Uncharacterized protei 0.302 0.300 0.419 1e-70
RGD|1305319639 Ttll12 "tubulin tyrosine ligas 0.293 0.311 0.421 4.7e-68
UNIPROTKB|Q14166644 TTLL12 "Tubulin--tyrosine liga 0.293 0.309 0.430 4.7e-68
UNIPROTKB|F1NZA1 TTLL12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 485 (175.8 bits), Expect = 5.7e-117, Sum P(3) = 5.7e-117
 Identities = 95/210 (45%), Positives = 142/210 (67%)

Query:   295 EPGAEYFSS--GHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEE 352
             EP  E++ +     +E LP +  +   + D+DK+ KV+++ + V  +LTHPRFV  D E 
Sbjct:   256 EPSDEHYQAILAENKEKLPIA--INPSVYDKDKVFKVFTDIQQVLNSLTHPRFVFTDKEA 313

Query:   353 EADILWYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTS 412
             EADIL+   HFKD++ L+EE P   +NQFP E +LT+KD L+ + RR             
Sbjct:   314 EADILYNFSHFKDYRKLSEERPEVMLNQFPCENLLTVKDCLASISRRAGGP-------DG 366

Query:   413 PDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL 472
             P WLP T+NL+TEL +F+ Y+Q RE++  +N WI KP+NLARSLD++IT+++N +I+   
Sbjct:   367 PRWLPRTFNLQTELPQFICYFQQRERRGEDNHWICKPWNLARSLDTHITNSLNNIIRHRE 426

Query:   473 TGPKIIQKYIENPILFYRDDLSGKVKFDVR 502
             + PK++ KYIENP+LF+R+D+ G VKFD+R
Sbjct:   427 SSPKVVCKYIENPVLFHREDV-GMVKFDIR 455
GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
FB|FBgn0033225 CG1550 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJR7 TTLL12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5K2 TTLL12 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-697 ttll12 "tubulin tyrosine ligase-like family, member 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00008405 ttll-12 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q09512 ttll-12 "Tubulin--tyrosine ligase-like protein 12" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQD3 TTLL12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1305319 Ttll12 "tubulin tyrosine ligase-like family, member 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14166 TTLL12 "Tubulin--tyrosine ligase-like protein 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09512TTL12_CAEEL6, ., -, ., -, ., -0.30810.82270.8413yesN/A
Q3UDE2TTL12_MOUSENo assigned EC number0.34910.80940.8575yesN/A
Q14166TTL12_HUMANNo assigned EC number0.34890.81830.8602yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 2e-38
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  143 bits (363), Expect = 2e-38
 Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 70/295 (23%)

Query: 378 VNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNRE 437
           +N FP  Y +T KDLL    +R   D  +       D+LP T+ L T+L +F+ Y+++ E
Sbjct: 11  LNHFPGSYEITRKDLLWKNIKRQPCDFGR-----KFDFLPRTFILPTDLAEFVDYFEDNE 65

Query: 438 KKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKV 497
           +    N WI+KP   AR     IT++++ ++K   + P ++QKYIE P+L          
Sbjct: 66  R----NTWIVKPSASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDG------- 114

Query: 498 KFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFL 557
                                             KFD+R  VLV SV PL+VY+Y+   L
Sbjct: 115 ---------------------------------RKFDIRLYVLVTSVNPLRVYVYREGLL 141

Query: 558 RFANKPF--ELSKFDDYEIHFTVMNYDDKTPLC---KMLCSDFK---IEFEKQNPNENWD 609
           RFA+  +   +S  DD E+H T  +   K+          +  K     F K    ++ +
Sbjct: 142 RFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEPNGHKWSLFNFWKYLEEKDKE 201

Query: 610 HIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLML 664
            I         W  IES I+        AA ++   L +        LY  D M+
Sbjct: 202 EI---------WLEIESIIIK----TILAAEVEASRLNVQPLYNCFELYGFDFMI 243

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 677
KOG2155|consensus631 100.0
KOG2156|consensus 662 100.0
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2157|consensus497 100.0
KOG2158|consensus 565 99.98
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 98.41
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 96.15
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 96.04
KOG2155|consensus631 96.01
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 95.26
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 95.14
PRK12458338 glutathione synthetase; Provisional 95.08
PRK05246316 glutathione synthetase; Provisional 94.57
PLN02941328 inositol-tetrakisphosphate 1-kinase 94.56
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 94.39
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 94.32
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 93.97
PRK10446300 ribosomal protein S6 modification protein; Provisi 93.59
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 93.5
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 93.12
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 92.94
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 92.83
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 92.79
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 90.84
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 90.53
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 90.28
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 88.13
PRK08462445 biotin carboxylase; Validated 87.87
PRK08654 499 pyruvate carboxylase subunit A; Validated 87.45
PRK07206416 hypothetical protein; Provisional 87.44
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 87.21
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 86.45
PRK14571299 D-alanyl-alanine synthetase A; Provisional 84.97
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 84.12
PRK06849389 hypothetical protein; Provisional 83.9
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 83.87
PRK12999 1146 pyruvate carboxylase; Reviewed 82.99
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 82.85
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 82.63
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 82.51
KOG2157|consensus497 82.09
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 81.71
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 81.38
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 80.98
PRK02186 887 argininosuccinate lyase; Provisional 80.93
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 80.6
PRK05586447 biotin carboxylase; Validated 80.55
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 80.06
>KOG2155|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.2e-133  Score=1055.35  Aligned_cols=542  Identities=41%  Similarity=0.717  Sum_probs=495.8

Q ss_pred             CCCCccHHHHHHHhHHHHHhCCCChHHHHHHHHhhhhccccccCceeeeeeecccCcC---------CCCCC-------c
Q psy14199          1 MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDER---------GETDP-------L   64 (677)
Q Consensus         1 ~~~~~~~~~F~~~H~~qL~~~~vP~~~w~~l~~Kl~~e~fDaG~~F~l~~~~~~~~~~---------~~~~p-------~   64 (677)
                      |.+...|.+|+++|++||+|||||++||.+||+||..|+||||++|||++++++|||+         ...++       +
T Consensus         1 ~~~a~~f~~F~~~Hg~~L~ASgvPp~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe~e~arel~~~q~nd~~~~~~l~   80 (631)
T KOG2155|consen    1 DRSAYPFSTFLDQHGGQLNASGVPPELWHRLYKKLSDQTFDAGDHFQIICEENEDDEETEFARELEDLQNNDEDNIFLLD   80 (631)
T ss_pred             CCccccHHHHHHhcccccccCCCCHHHHHHHHHHhhhcccCCcCeeeEEEecccchhHHHHHHHHHhccCCCccceeeee
Confidence            5688999999999999999999999999999999999999999999999998886551         11111       6


Q ss_pred             eEEEEEccCCCCCCCCCC--------EEEEeeeeeeccchHHHHhh-----hCcchHHHHHhhhCCCC------------
Q psy14199         65 YKVVVSNEDGIKKSDRSN--------IFLIDHAWTYSITTARSDLY-----SNPNLLERMSNLMGVDV------------  119 (677)
Q Consensus        65 ~~lvv~~e~~l~~~d~~~--------IfLIDHawTfr~~~ar~~L~-----~~p~L~~Rm~~lm~v~~------------  119 (677)
                      +.+.+++|+|.++-.|+.        ||+|||+||-+.++++++|+     +.++++.||++|||++.            
T Consensus        81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~~le~~v~~e~~e~l~~~s~l~G~~~~~~~vd~~l~~~  160 (631)
T KOG2155|consen   81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVEKLETSVEKEEAEHLKKISSLTGNLPRHESVDARLSSY  160 (631)
T ss_pred             eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHHHhhccchhhHHHHHHHHHHhhCCCCcccchhhccCcc
Confidence            899999999999999998        99999999999999999999     99999999999999522            


Q ss_pred             --CCCchhHHHHHHHHHhhccceeecccCCCCCCcceeEeeecccccccccCCCCCeeeeeeEecCCCcEEEEEeeeeec
Q psy14199        120 --DSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIK  197 (677)
Q Consensus       120 --~~~~~~~v~~v~~~mWky~~tY~l~~~~~~~~~~~~WYi~De~Gs~i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~  197 (677)
                        +.|+.+.+++|+++||||++||+| +.++..++++||||||||||||||||+||||++||+|||++++||||||+++ 
T Consensus       161 ~~~~P~~elv~~VL~amWky~qtY~l-a~~~~~ek~svWYvMDefGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~-  238 (631)
T KOG2155|consen  161 SVDDPKNELVEKVLKAMWKYSQTYSL-AYQGEIEKKSVWYVMDEFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKP-  238 (631)
T ss_pred             cccCcchHHHHHHHHHHHHhhheeec-ccCccccccceeEEHhhhhhhhccCCCCcceeeeheecchhcceeEEeeccC-
Confidence              356778999999999999999999 7778889999999999999999999999999999999999999999999999 


Q ss_pred             ceeeeeeecccCCeEEEeecccCCCCcccceeeecccCCCCcCccccccCCCcccccccCcccccCCCCCccccccchhh
Q psy14199        198 ILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDED  277 (677)
Q Consensus       198 ~~~~~~~~~~~g~~~~trd~~~~~~~~~~r~~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~e~lp~~~~~~~~~~~~~  277 (677)
                            +.  .|| ||||||+.|..+|++|+++|+||++++   ++....+ +.+||++..                   
T Consensus       239 ------~~--tge-E~trDfasg~~~p~~Rk~~l~pWa~td---e~~~~~~-~~e~~qa~~-------------------  286 (631)
T KOG2155|consen  239 ------VN--TGE-EITRDFASGVIHPEWRKYILQPWAATD---ETMIPDA-TLEYFQATE-------------------  286 (631)
T ss_pred             ------CC--Cch-HHHHHHhhcCCCHHHHHHHhccccCCC---cccCCch-HHHHHHHHH-------------------
Confidence                  88  999 999999999999999999999999976   3333333 566665511                   


Q ss_pred             hHHhhhhccccccccCCCCCccccccCccccCCCCCCCcccccCCCCCeEEEEechHHHHHHHcCCCCEEeCCCCCceEE
Q psy14199        278 KILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADIL  357 (677)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkv~t~~~~V~~~L~~~gf~~~~~~~~adi~  357 (677)
                                                   .+..+|.|.++.++.. ++++||||+..+|.+.|+++.|++++++.+|||+
T Consensus       287 -----------------------------~e~k~s~p~~s~pi~h-g~~~kVYtD~~Qv~e~Lt~p~f~~t~~~kdADil  336 (631)
T KOG2155|consen  287 -----------------------------QETKQSAPFTSLPILH-GRKIKVYTDDTQVTEHLTNPKFEYTDDIKDADIL  336 (631)
T ss_pred             -----------------------------HhccccCCcccccccc-CceeEEEcCcHHHHHhccCCceEeccCcccccee
Confidence                                         1112333444444444 7889999999999999999999999999999999


Q ss_pred             EccccccchhhhhhcCCCeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhh
Q psy14199        358 WYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNRE  437 (677)
Q Consensus       358 W~~~~~~~~~~l~~~~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~  437 (677)
                      |..+|++||+++++.+|.|+|||||++++||.||+|+.++++..         +..+|+|.||||.+++++|+++|++|+
T Consensus       337 w~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~---------g~~~Wlq~TyNL~TqLpqFv~~fq~Re  407 (631)
T KOG2155|consen  337 WMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDP---------GKNDWLQLTYNLNTQLPQFVARFQNRE  407 (631)
T ss_pred             eehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcC---------CCCcccccccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888744         356799999999999999999999999


Q ss_pred             hcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhh
Q psy14199        438 KKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYL  517 (677)
Q Consensus       438 ~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~  517 (677)
                      ..|.+|+||+||||+|||.+++||.++++|+|+.+++|+||||||++|+|+.                            
T Consensus       408 r~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr----------------------------  459 (631)
T KOG2155|consen  408 RNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFR----------------------------  459 (631)
T ss_pred             hcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceee----------------------------
Confidence            9999999999999999999999999999999999999999999999999992                            


Q ss_pred             hcccccccCCCCCceeeEEEEEEEeeccCcEEEEEccceeeccccCCCCCCCCCcceeeeecccCCCCCccCcchhhhHH
Q psy14199        518 YKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKI  597 (677)
Q Consensus       518 ~~~~~~~~~~~~grKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l~~l~d~~~HLTN~NYs~~~~~~~~~~~dF~~  597 (677)
                                 +| ||||||.||++|+.||++|+|+.+|+|||+++|+++++++++.|||+|||.  +++.+|.|++|+.
T Consensus       460 -----------~g-KFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL~~f~dyEtHFTVmNY~--~kl~q~~ceeFi~  525 (631)
T KOG2155|consen  460 -----------NG-KFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSLSNFEDYETHFTVMNYL--EKLLQMKCEEFIG  525 (631)
T ss_pred             -----------cC-ccceEEEEEEccccchhhhheeheeeeecCCccchhhhhhhhhhhhhhhHH--HHHhhccHHHHHH
Confidence                       44 999999999999999999999999999999999999999999999999998  4789999999999


Q ss_pred             HHHhhCCCCCccccccCCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCc
Q psy14199        598 EFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNS  670 (677)
Q Consensus       598 ~l~~~~~~~~W~~~~~g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~  670 (677)
                      .+++.||..+|+.             +...|..+|+++|++|....++++....++++++||+|+||.+++++
T Consensus       526 ~~ek~yp~~pw~d-------------vq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~p  585 (631)
T KOG2155|consen  526 EFEKGYPCFPWED-------------VQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTP  585 (631)
T ss_pred             HHhhcCCCCCcch-------------hhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCc
Confidence            9999999999998             89999999999999999999999999999999999999999888876

>KOG2156|consensus Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 3e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  122 bits (306), Expect = 3e-30
 Identities = 61/354 (17%), Positives = 114/354 (32%), Gaps = 84/354 (23%)

Query: 347 IVDNEEEADILWYTHHFKDFKTLA-EETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIE 405
           +  +  + +++    +   F  L  E    + VN +     L  K  L  + + + +  E
Sbjct: 33  LKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTE 92

Query: 406 KTTLQT-SPDWLPTTYNLKT-----------------ELLKFMSYYQNREKKNLNNLWII 447
             T    S    PT                       E  +F S +  +++    N+WI 
Sbjct: 93  TCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIA 152

Query: 448 KPFNLARSLDSYITDNINMVIKSALTGPK--IIQKYIENPILFYRDDLSGKVKFDVRYVV 505
           K  + A+     I+ +   ++       +  +IQKY+E+P+L       G  KFD+R  V
Sbjct: 153 KSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLE----PGHRKFDIRSWV 208

Query: 506 LVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFE 565
           LV +                                       +YLY+   LR +++P+ 
Sbjct: 209 LVDN------------------------------------QYNIYLYREGVLRTSSEPYS 232

Query: 566 LSKFDDYEIHFTVM--------NYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINP 617
            + F D   H T          NY       +M   +F              ++ + +N 
Sbjct: 233 DTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEF------------NQYLVTSLNI 280

Query: 618 SENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSY 671
               + I  +I  + R              L ++  S  L+  D M+ K    +
Sbjct: 281 -NLENSILCQIKEIIRVCLSCLEPAISTKYLPYH--SFQLFGFDFMVDKNLKVW 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
3n6x_A474 Putative glutathionylspermidine synthase; domain o 95.39
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 95.16
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 94.87
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 94.31
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 93.88
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 93.78
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 93.74
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 93.22
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 93.19
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 93.13
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 92.77
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 92.6
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 92.56
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 92.44
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 91.85
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 91.57
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 91.46
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 90.86
3ouz_A446 Biotin carboxylase; structural genomics, center fo 90.27
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 89.59
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 89.58
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 88.76
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 88.55
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 88.48
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 88.25
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 87.8
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 87.45
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 87.27
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 87.06
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 86.8
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 86.72
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 86.56
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 86.45
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 86.22
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 86.17
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 85.59
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 85.5
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 85.49
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 85.42
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 85.21
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 85.12
3qww_A433 SET and MYND domain-containing protein 2; methyltr 84.48
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 84.45
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 84.34
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 84.29
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 84.05
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 84.04
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 83.38
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 83.27
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 83.03
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 82.71
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 82.41
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 82.2
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 82.02
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 81.72
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 81.63
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 81.44
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 81.03
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 80.51
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 80.46
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=2e-56  Score=481.43  Aligned_cols=282  Identities=22%  Similarity=0.327  Sum_probs=213.2

Q ss_pred             echHHHHHHHcCCC-CEEeC-CCCCceEEEccccccchhhhhhc-CCCeEEcccccCcccccchHHHHHHHHhHhhhhcc
Q psy14199        331 SEYKYVSENLTHPR-FVIVD-NEEEADILWYTHHFKDFKTLAEE-TPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKT  407 (677)
Q Consensus       331 t~~~~V~~~L~~~g-f~~~~-~~~~adi~W~~~~~~~~~~l~~~-~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~  407 (677)
                      |.|+.|+++|++.| |+.+. +..+||++|.+.+.+.|.++... .++|+||||||++.|||||.|+++++++..  +  
T Consensus        15 svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~--~--   90 (380)
T 3tig_A           15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPE--L--   90 (380)
T ss_dssp             HHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCHH--H--
T ss_pred             cHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhhh--c--
Confidence            55999999999999 98775 46789999999998888888654 678999999999999999999999999532  1  


Q ss_pred             CCCCCCCcccceeec-Ch-----------------------hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCC
Q psy14199        408 TLQTSPDWLPTTYNL-KT-----------------------ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDN  463 (677)
Q Consensus       408 ~~~~~~~~~P~Tf~L-~~-----------------------el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~  463 (677)
                        +..++|+|+||+| |.                       |+.+|+++|.+++..|.++.||+||++++||+||+++++
T Consensus        91 --~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~  168 (380)
T 3tig_A           91 --TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSD  168 (380)
T ss_dssp             --HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSC
T ss_pred             --ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCC
Confidence              2478999999999 75                       456899999988778899999999999999999999999


Q ss_pred             hHHHHHhhc--cCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhhhcccccccCCCCCceeeEEEEEEE
Q psy14199        464 INMVIKSAL--TGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLV  541 (677)
Q Consensus       464 l~~I~r~~~--t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~grKFDlR~YVLV  541 (677)
                      +++|.+..+  ..++|||+||+||+||.                                      .+|+|||||+||||
T Consensus       169 ~~~i~~~~~~~~~~~VvQkYI~~PlLi~--------------------------------------~~grKFDlR~Yvlv  210 (380)
T 3tig_A          169 ATELLDFIDNQGQVHVIQKYLESPLLLE--------------------------------------PGHRKFDIRSWVLV  210 (380)
T ss_dssp             SHHHHHHHHHHTSCEEEEECCSSBCCBT--------------------------------------TTTBCEEEEEEEEE
T ss_pred             HHHHHHHHhccCCcEEEEecccCceeec--------------------------------------CCCceeEEEEEEEE
Confidence            999987643  46899999999999992                                      05899999999999


Q ss_pred             eeccCcEEEEEccceeeccccCCCCCCCCCcceeeeecccCCC--------CCccCcchhhhHHHHHhhCCCCCcccccc
Q psy14199        542 KSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDK--------TPLCKMLCSDFKIEFEKQNPNENWDHIES  613 (677)
Q Consensus       542 tSv~PL~vYly~~glvRfAt~~Y~l~~l~d~~~HLTN~NYs~~--------~~~~~~~~~dF~~~l~~~~~~~~W~~~~~  613 (677)
                      ||  ||+||+|++|++|||+++|++++++|.++||||+..+++        +.++.+++++|.+++++.+ +..|..   
T Consensus       211 ts--~l~vy~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~-~~~~~~---  284 (380)
T 3tig_A          211 DN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSL-NINLEN---  284 (380)
T ss_dssp             CT--TCCEEECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTS-SCCHHH---
T ss_pred             cC--CCEEEEEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhc-CccHHH---
Confidence            98  999999999999999999999999999999998755442        2356788899999998765 334542   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCcccc
Q psy14199        614 KINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHV  673 (677)
Q Consensus       614 g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~~  673 (677)
                               .|.++|+++|+.+|.+++......  ..+.+||||||+|||||+++++|.+
T Consensus       285 ---------~i~~~I~~ii~~~l~a~~~~i~~~--~~~~~~FEl~G~D~lid~~l~~wll  333 (380)
T 3tig_A          285 ---------SILCQIKEIIRVCLSCLEPAISTK--YLPYHSFQLFGFDFMVDKNLKVWLI  333 (380)
T ss_dssp             ---------HTHHHHHHHHHHHHHHHHHHHCCT--TSSSEECEEEEEEEEEBTTCCEEEE
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhhhc--ccCCceEEEEeEEEEEcCCCcEEEE
Confidence                     377888888888888876554322  2346899999999999999998875
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 95.03
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 94.96
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 94.67
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 94.36
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 93.64
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 92.91
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 92.17
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 91.95
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 91.73
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 89.42
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 89.32
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 87.05
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 86.23
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 83.99
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 81.12
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.022  Score=52.75  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             CCCcccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHH--HHH--h---hccCCceeeeec
Q psy14199        412 SPDWLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINM--VIK--S---ALTGPKIIQKYI  482 (677)
Q Consensus       412 ~~~~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~--I~r--~---~~t~p~VVQkYI  482 (677)
                      .++++|+|....  .++.+|++.+         .-+|+||..++.|+|+....+.+.  ...  .   ....+.++|.|+
T Consensus         9 ~~~~~P~Tlit~~~~~~~~f~~~~---------g~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~   79 (192)
T d1gsaa2           9 FSDLTPETLVTRNKAQLKAFWEKH---------SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYL   79 (192)
T ss_dssp             GTTTSCCEEEESCHHHHHHHHHHH---------SSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECC
T ss_pred             hcccCCCeEEECCHHHHHHHHHHc---------CCeEEEEcCCCeEEEEEEeecCchhhhHHHHHHHhcCcccccccccc
Confidence            457899999765  3455554431         268999999999999988863321  111  1   112456888888


Q ss_pred             c
Q psy14199        483 E  483 (677)
Q Consensus       483 e  483 (677)
                      .
T Consensus        80 ~   80 (192)
T d1gsaa2          80 P   80 (192)
T ss_dssp             G
T ss_pred             c
Confidence            6
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure