Psyllid ID: psy14209

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccEEEEEcccccccEEEEEEcccccccHHcccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEcEEEEEEccccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccEEEEEcccEEEEEcccccccEEEEEEEcHccccHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccHHHccHHHEEEEccccEEEc
Coil and Loop (DISEMBL)
msflskiifkpntwwfvtdndvvafpdikpaakhHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHrygfhwppfysighlHLHViapvsemsflskiifkpntwwfv
Flexible Loop (DISEMBL)
msflskiifkpntwwfVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Low Complexity Region (SEG)
MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Disordered region (IsUnstruct)
***LSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWF*
Disordered Region (DISOPRED)
MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Disordered Region (DISEMBL)
MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Disordered Region (DISPRO)
***LSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q28BZ2	153	Histidine triad nucleotid	yes	N/A	0.857	0.666	0.447	2e-21
Q9NQE9	182	Histidine triad nucleotid	yes	N/A	0.890	0.582	0.413	1e-19
Q5R9L4	182	Histidine triad nucleotid	yes	N/A	0.890	0.582	0.413	1e-19
Q9CPS6	165	Histidine triad nucleotid	yes	N/A	0.907	0.654	0.439	3e-19
Q8K3P7	175	Histidine triad nucleotid	yes	N/A	0.924	0.628	0.412	1e-18
Q2YDJ4	182	Histidine triad nucleotid	yes	N/A	0.991	0.648	0.387	4e-18
Q5PNN8	160	Histidine triad nucleotid	no	N/A	0.764	0.568	0.361	7e-10
Q7T287	347	Aprataxin OS=Xenopus laev	N/A	N/A	0.764	0.262	0.322	0.0002

>sp|Q28BZ2|HINT3_XENTR Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis GN=hint3 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 18  TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
           +D+D+V F DI+PA  HH LV+ K+HV   K LT +H  L++ + ++   T     V   
Sbjct: 37  SDDDLVCFKDIRPAVTHHYLVVPKKHVGTCKTLTKDHVQLIKTMMEVGKSTLQKNNVTDL 96

Query: 78  ---RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
              R GFH+PPF SI HLHLHV+AP S++ FLS++I++ N++WF+
Sbjct: 97  EDIRLGFHYPPFCSISHLHLHVLAPASQLGFLSRMIYRVNSYWFI 141

Hydrolyzes phosphoramidate and acyl-adenylate substrates.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q9NQE9|HINT3_HUMAN Histidine triad nucleotide-binding protein 3 OS=Homo sapiens GN=HINT3 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 10/116 (8%)

Query: 11  PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
           P T     +N D++ F DIKPAA HH LV+ K+H+ N + L    K  V+ +E++  +  
Sbjct: 59  PGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL---RKDQVELVENMVTVGK 115

Query: 70  LCLMV------IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
             L           R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct: 116 TILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 171

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R9L4|HINT3_PONAB Histidine triad nucleotide-binding protein 3 OS=Pongo abelii GN=HINT3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 10/116 (8%)

Query: 11  PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
           P T     +N D++ F DIKPAA HH LV+ K+H+ N + L    K  V+ +E++  +  
Sbjct: 59  PGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL---RKDQVELVENMVTVGK 115

Query: 70  LCLMV------IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
             L           R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct: 116 TILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 171

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CPS6|HINT3_MOUSE Histidine triad nucleotide-binding protein 3 OS=Mus musculus GN=Hint3 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 8/116 (6%)

Query: 10  KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT 68
           +P T  F  +N D+V F DIKPAA +H LV+ K+H+ + K L  +H  +V+ +  ++A  
Sbjct: 41  EPKTELFHCENEDLVCFKDIKPAALYHYLVVPKKHIGSCKDLNKDHIEMVESM--VAAGK 98

Query: 69  YLCLMVIFH-----RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
            +     F      R GFH PPF SI HLHLHVIAPV E  FLSK++++ +++WFV
Sbjct: 99  TMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIAPVKEFGFLSKLVYRQDSYWFV 154

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8K3P7|HINT3_RAT Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus GN=Hint3 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 10  KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AI 67
           +P T     +N D+V F DIKPAA HH LV+ K+H+ + K L  +H  +V+ +  +   I
Sbjct: 51  EPETELLYCENKDLVCFKDIKPAALHHYLVVPKKHIGSCKDLNKDHIEMVESMVTVGKTI 110

Query: 68  TYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                   F   R GFH PPF S+ HLHLHVIAP  E  FLS+++++ +++WF+
Sbjct: 111 LERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIAPAKEFGFLSRVVYRRDSYWFI 164

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q2YDJ4|HINT3_BOVIN Histidine triad nucleotide-binding protein 3 OS=Bos taurus GN=HINT3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 11/129 (8%)

Query: 2   SFLSKIIF-------KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSE 53
           ++ SK +F        P T     +N D+V F DIKPAA HH LV+ K+H  N K L  +
Sbjct: 43  NYSSKCVFCRIAAHQDPGTELLHCENEDLVCFKDIKPAAPHHYLVVPKKHFENCKYLKKD 102

Query: 54  HKALVQWLEDLS-AITYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKII 110
              L++ +  +  AI        F   R GFH  PF SI HLHLHV+AP  ++SF+S+++
Sbjct: 103 QIELIENMVTVGKAILERNNFTDFENTRMGFHVSPFCSIAHLHLHVLAPADQLSFMSRLV 162

Query: 111 FKPNTWWFV 119
           ++ N++WF+
Sbjct: 163 YRVNSYWFI 171

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5PNN8|HINT3_DANRE Histidine triad nucleotide-binding protein 3 OS=Danio rerio GN=hint3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 13  TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL 72
           T     D D V F DI P A HH LVI K+H+ +   L ++  +LV+ + ++        
Sbjct: 36  TEILAEDEDFVCFRDINPGAPHHYLVIPKKHIYSCLSLYADDISLVRGMAEMGRNVLKAN 95

Query: 73  MVIFHR---YGFHWPPFYSIGHLHLHVIAPVSEM 103
            V   +    GFH PP+ ++ HLHLHV+AP S++
Sbjct: 96  NVTDLKDISLGFHVPPYITVPHLHLHVLAPYSQL 129

Hydrolyzes phosphoramidate and acyl-adenylate substrates.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7T287|APTX_XENLA Aprataxin OS=Xenopus laevis GN=aptx PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 6   KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
           K+  +  T     D+ +V   D  P A++H LV+  Q + + KVL +EH  LVQ ++ + 
Sbjct: 177 KVSMQDPTMQVFKDDKIVVIKDKYPKARYHWLVLPWQSIASLKVLRAEHLELVQHMDAVG 236

Query: 66  ---AITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
              A  +        R+G+H  P  S+ H+HLHVI+
Sbjct: 237 HNIAREHTNSKCAPFRFGYHAIP--SMSHVHLHVIS 270

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
126311019	168	PREDICTED: histidine triad nucleotide-bi	0.915	0.648	0.460	2e-22
126304493	168	PREDICTED: histidine triad nucleotide-bi	0.915	0.648	0.460	4e-22
223649050	166	Histidine triad nucleotide-binding prote	0.831	0.596	0.481	9e-22
226372514	155	Histidine triad nucleotide-binding prote	0.823	0.632	0.458	2e-21
156538086	144	PREDICTED: histidine triad nucleotide-bi	0.848	0.701	0.475	1e-20
357627080	151	Histidine triad nucleotide-binding prote	0.890	0.701	0.464	3e-20
47224061	166	unnamed protein product [Tetraodon nigro	0.924	0.662	0.426	3e-20
113931394	153	histidine triad nucleotide-binding prote	0.857	0.666	0.447	7e-20
410905055	166	PREDICTED: histidine triad nucleotide-bi	0.924	0.662	0.409	8e-20
327261626	183	PREDICTED: histidine triad nucleotide-bi	0.823	0.535	0.466	1e-19

>gi|126311019|ref|XP_001380167.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Monodelphis domestica]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 76/115 (66%), Gaps = 6/115 (5%)

Query: 10  KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT 68
           +P T     ++ D+V FPDI+P A HH LV+ K+H+ N K+L  E  +LV+ +  +   T
Sbjct: 44  EPGTQLLPCESEDLVCFPDIRPGAPHHYLVVPKRHIGNCKILKKEDTSLVEKMITVGK-T 102

Query: 69  YLCLMVIFH----RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
            L    I +    R GFHWPPF SIGHLHLHV+AP S+M FLS++I++ N++WF+
Sbjct: 103 VLQQKNITNLSDVRMGFHWPPFCSIGHLHLHVLAPASQMGFLSRLIYRRNSYWFI 157

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126304493|ref|XP_001382197.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Monodelphis domestica]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 76/115 (66%), Gaps = 6/115 (5%)

Query: 10  KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT 68
           +P T     ++ D+V FPDI+P A HH LV+ K+H+ N K+L  E  +LV+ +  +   T
Sbjct: 44  EPGTQLLPCESEDLVCFPDIRPGAPHHYLVVPKRHIGNCKILKKEDTSLVEKMITVGK-T 102

Query: 69  YLCLMVIFH----RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
            L    I +    R GFHWPPF SIGHLHLHV+AP S+M FLS++I++ N++WF+
Sbjct: 103 VLQQKNITNLSDVRMGFHWPPFCSIGHLHLHVLAPASQMGFLSRLIYRHNSYWFI 157

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|223649050|gb|ACN11283.1| Histidine triad nucleotide-binding protein 3 [Salmo salar]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 7/106 (6%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQ-----WLEDLSAITYLCLM 73
           D +V  F DIKP A HH LV+  +HV N K L+ EH +LV+      +E L   + L L 
Sbjct: 47  DEEVSCFRDIKPGAPHHYLVVPTRHVGNCKSLSKEHVSLVEKMVEIGMEILQKNSVLDLS 106

Query: 74  VIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
            +  R+GFHWPPF S+ HLHLHV+AP S+M F+S++ ++PN++WFV
Sbjct: 107 DV--RFGFHWPPFCSVSHLHLHVLAPASQMGFMSRLFYRPNSYWFV 150

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226372514|gb|ACO51882.1| Histidine triad nucleotide-binding protein 3 [Rana catesbeiana]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 73/109 (66%), Gaps = 11/109 (10%)

Query: 18  TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
           +D D+V F DI+P A +H LV+ K+H+ N K LT+EH  LVQ + ++       ++   H
Sbjct: 35  SDEDLVCFRDIRPGAPYHYLVVPKKHIGNCKTLTNEHVPLVQNMMEVGKN----MLQKNH 90

Query: 78  -------RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                  R GFHWPPF SIGHLHLHV+AP S++ FLS++I++ N++WF+
Sbjct: 91  VTDLEDTRLGFHWPPFCSIGHLHLHVLAPASQLGFLSRMIYRINSYWFI 139

Source: Rana catesbeiana

Species: Rana catesbeiana

Genus: Rana

Family: Ranidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156538086|ref|XP_001607971.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Nasonia vitripennis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL--SAITYLCLMVIF 76
           D+ V    DI PA+ HH L+I K H++NAKVL  EH+ L   +     + +  L L+   
Sbjct: 29  DDHVACIKDINPASDHHYLIIPKNHIVNAKVLNKEHEELYDKMVATVDTIVDKLGLVKNS 88

Query: 77  HRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
            R GFHWPPF ++GHLHLHVI+PV +M F+  ++FKPN+ WFV
Sbjct: 89  TRTGFHWPPFTTVGHLHLHVISPVEKMGFIKNMMFKPNSHWFV 131

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627080|gb|EHJ76900.1| Histidine triad nucleotide-binding protein 3 [Danaus plexippus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 6/112 (5%)

Query: 12  NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL----EDLSAI 67
           NT     D +V  F DIKPA+ +H L I K+H+ + K LTS  K LVQ +    ++L A 
Sbjct: 24  NTEILYEDEEVCVFRDIKPASDYHILTIPKRHIDDVKCLTSADKELVQKMLATAKELLAK 83

Query: 68  TYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
             L L     R+G+HWPPF SI HLHLH IAP S+M F+  ++F+ N++WFV
Sbjct: 84  NNLSLEDA--RFGYHWPPFRSIKHLHLHTIAPESKMGFIGNMVFRKNSFWFV 133

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47224061|emb|CAG12890.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 12/122 (9%)

Query: 6   KIIFKP-NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
           KI+ K   T     D ++  F DI+P A HH LV+  +HV N K L+ EH  LVQ + +L
Sbjct: 33  KIVNKELETELLHCDGEISCFRDIRPGAPHHYLVVPTKHVGNCKSLSKEHVPLVQRMVEL 92

Query: 65  SA-------ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWW 117
                    +T L       R+GFHWPPF S+ HLHLHV+AP S+M F+S++I++ N++W
Sbjct: 93  GKEILQKNDVTDLSDA----RFGFHWPPFCSVTHLHLHVLAPASQMGFMSRLIYRLNSYW 148

Query: 118 FV 119
           F+
Sbjct: 149 FI 150

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|113931394|ref|NP_001039146.1| histidine triad nucleotide-binding protein 3 [Xenopus (Silurana) tropicalis] gi|123892270|sp|Q28BZ2.1|HINT3_XENTR RecName: Full=Histidine triad nucleotide-binding protein 3; Short=HINT-3 gi|89272536|emb|CAJ83661.1| histidine triad nucleotide binding protein 3 [Xenopus (Silurana) tropicalis] gi|165971066|gb|AAI58182.1| histidine triad nucleotide binding protein 3 [Xenopus (Silurana) tropicalis]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 18  TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
           +D+D+V F DI+PA  HH LV+ K+HV   K LT +H  L++ + ++   T     V   
Sbjct: 37  SDDDLVCFKDIRPAVTHHYLVVPKKHVGTCKTLTKDHVQLIKTMMEVGKSTLQKNNVTDL 96

Query: 78  ---RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
              R GFH+PPF SI HLHLHV+AP S++ FLS++I++ N++WF+
Sbjct: 97  EDIRLGFHYPPFCSISHLHLHVLAPASQLGFLSRMIYRVNSYWFI 141

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410905055|ref|XP_003966007.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Takifugu rubripes]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 12/122 (9%)

Query: 6   KIIFKP-NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
           KI+ K   T     D ++  F DI+P A HH LV+  +HV N K L+ EH  LVQ + +L
Sbjct: 33  KIVNKEMETELLHCDEEMSCFKDIRPGAPHHYLVVPTKHVGNCKSLSKEHVPLVQRMVEL 92

Query: 65  SA-------ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWW 117
                    +T L  +    R+GFHWPPF S+ HLHLH++AP S+M F+S+++++ N++W
Sbjct: 93  GKEILQKNNVTDLSDV----RFGFHWPPFCSVTHLHLHILAPASQMGFMSRLVYRLNSYW 148

Query: 118 FV 119
           F+
Sbjct: 149 FI 150

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327261626|ref|XP_003215630.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Anolis carolinensis]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 7/105 (6%)

Query: 20  NDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFH-- 77
            D+V F DI+P A HH LV+ K H+ N K L SEH  LV+ +  ++A   +     F   
Sbjct: 65  EDLVCFRDIRPGAPHHYLVVPKNHIGNCKTLKSEHIPLVERM--MAAGKAILQRNKFTDL 122

Query: 78  ---RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
              R GFHWPPF SI HLHLHV+AP S++ FLS++I++ N++WF+
Sbjct: 123 NDIRMGFHWPPFCSIAHLHLHVLAPASQLGFLSRMIYRINSYWFI 167

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
ZFIN|ZDB-GENE-100922-168	160	hint3 "histidine triad nucleot	0.857	0.637	0.476	3e-21
UNIPROTKB|F1S2W6	182	HINT3 "Uncharacterized protein	0.924	0.604	0.438	2.1e-20
UNIPROTKB|F1PKA3	116	HINT3 "Uncharacterized protein	0.848	0.870	0.451	3.5e-20
FB|FBgn0054015	139	CG34015 [Drosophila melanogast	0.899	0.769	0.412	7.2e-20
UNIPROTKB|Q9NQE9	182	HINT3 "Histidine triad nucleot	0.915	0.598	0.424	9.2e-20
MGI|MGI:1914097	165	Hint3 "histidine triad nucleot	0.899	0.648	0.444	1.2e-19
RGD|621603	175	Hint3 "histidine triad nucleot	0.924	0.628	0.412	4e-19
UNIPROTKB|Q2YDJ4	182	HINT3 "Histidine triad nucleot	0.915	0.598	0.415	1.4e-18
FB|FBgn0031378	168	CG15362 [Drosophila melanogast	0.840	0.595	0.394	1.6e-13
UNIPROTKB|F1P585	53	HINT3 "Uncharacterized protein	0.352	0.792	0.619	5.6e-13

ZFIN|ZDB-GENE-100922-168 hint3 "histidine triad nucleotide binding protein 3" [Danio rerio (taxid:7955)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/105 (47%), Positives = 67/105 (63%)

Query:    18 TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQ-WLEDLSAITYLCLMVIF 76
             +D  V  F DI P A HH LV+  +HV N K L+ EH  LV+  LE    I     +   
Sbjct:    43 SDETVSCFQDIHPGAPHHYLVVPSKHVGNCKSLSKEHVPLVEKMLETGKEILEKNNVTDL 102

Query:    77 H--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                R+GFHWPPF S+ HLHLHV+APVS+M F+S++I++ N++WFV
Sbjct:   103 SDVRFGFHWPPFCSVTHLHLHVLAPVSQMGFMSRLIYRLNSYWFV 147

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S2W6 HINT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 50/114 (43%), Positives = 70/114 (61%)

Query:    10 KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AI 67
             +P T     +N D+V F DIKPAA HH LV  K+H++N   L  +   LV+ +  +   I
Sbjct:    58 EPGTELLYCENEDLVCFKDIKPAAPHHYLVAPKKHIVNCNYLKKDQIGLVENMVTVGKTI 117

Query:    68 TYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                     F+  R GFH PPF SI HLHLHV+APV  +SFLS++++K N++WF+
Sbjct:   118 LERNNFTDFNNIRMGFHIPPFCSISHLHLHVLAPVDHLSFLSRLVYKENSYWFI 171

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PKA3 HINT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/104 (45%), Positives = 67/104 (64%)

Query:    19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLMVIFH 77
             + D+V F DIKPAA HH LV+ K+H+ N + L  +H  LV+ +  +   I        F 
Sbjct:     2 NEDLVCFKDIKPAAPHHYLVVPKKHLGNCRELKKDHIELVESMVAVGKTILERNNFTDFK 61

Query:    78 --RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
               R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct:    62 NARMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 105

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0054015 CG34015 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 45/109 (41%), Positives = 71/109 (65%)

Query:    11 PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL--SAIT 68
             P+T   V ++D V F DIKPA++HH L ++K+H  + K L   H +LVQ +E+     + 
Sbjct:    17 PSTVLEVENDDFVIFQDIKPASQHHYLAVTKKHYASLKDLNKSHDSLVQLMENALKDLLV 76

Query:    69 YLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWW 117
                + V    +GFH PPF ++ HLH+H I+P ++M+FLSK+IF+P+ W+
Sbjct:    77 SKGVSVDDALFGFHLPPFITVKHLHMHAISPRTQMTFLSKMIFRPSVWF 125

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9NQE9 HINT3 "Histidine triad nucleotide-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 48/113 (42%), Positives = 69/113 (61%)

Query:    11 PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AIT 68
             P T     +N D++ F DIKPAA HH LV+ K+H+ N + L  +   LV+ +  +   I 
Sbjct:    59 PGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTIL 118

Query:    69 YLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                    F   R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct:   119 ERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 171

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1914097 Hint3 "histidine triad nucleotide binding protein 3" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 52/117 (44%), Positives = 72/117 (61%)

Query:    10 KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT 68
             +P T  F  +N D+V F DIKPAA +H LV+ K+H+ + K L  +H   ++ +E + A  
Sbjct:    41 EPKTELFHCENEDLVCFKDIKPAALYHYLVVPKKHIGSCKDLNKDH---IEMVESMVAAG 97

Query:    69 YLCL----MVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                L       F   R GFH PPF SI HLHLHVIAPV E  FLSK++++ +++WFV
Sbjct:    98 KTMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIAPVKEFGFLSKLVYRQDSYWFV 154

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

RGD|621603 Hint3 "histidine triad nucleotide binding protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/114 (41%), Positives = 69/114 (60%)

Query:    10 KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AI 67
             +P T     +N D+V F DIKPAA HH LV+ K+H+ + K L  +H  +V+ +  +   I
Sbjct:    51 EPETELLYCENKDLVCFKDIKPAALHHYLVVPKKHIGSCKDLNKDHIEMVESMVTVGKTI 110

Query:    68 TYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                     F   R GFH PPF S+ HLHLHVIAP  E  FLS+++++ +++WF+
Sbjct:   111 LERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIAPAKEFGFLSRVVYRRDSYWFI 164

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q2YDJ4 HINT3 "Histidine triad nucleotide-binding protein 3" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 47/113 (41%), Positives = 68/113 (60%)

Query:    11 PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AIT 68
             P T     +N D+V F DIKPAA HH LV+ K+H  N K L  +   L++ +  +  AI 
Sbjct:    59 PGTELLHCENEDLVCFKDIKPAAPHHYLVVPKKHFENCKYLKKDQIELIENMVTVGKAIL 118

Query:    69 YLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
                    F   R GFH  PF SI HLHLHV+AP  ++SF+S+++++ N++WF+
Sbjct:   119 ERNNFTDFENTRMGFHVSPFCSIAHLHLHVLAPADQLSFMSRLVYRVNSYWFI 171

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0031378 CG15362 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/104 (39%), Positives = 58/104 (55%)

Query:    17 VTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIF 76
             V  ++ V F D  PAA+ H L I K+H  + K L   H  LV+ +E    + +L    + 
Sbjct:    51 VETDEYVIFKDKYPAARLHYLAIPKEHFDSLKALNKSHVGLVRRMEQ-GMMEFLRSQNVD 109

Query:    77 HR---YGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWW 117
              +    GFH PPF S+ HLHLH I P ++MSF +KI F P+ W+
Sbjct:   110 PKEAIVGFHLPPFISVRHLHLHGIFPPADMSFGNKISFMPSFWF 153

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1P585 HINT3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 26/42 (61%), Positives = 36/42 (85%)

Query:    78 RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
             R GFHWPPF SI HLHLHV+AP S++ FLS++I++ N++WF+
Sbjct:     1 RMGFHWPPFCSISHLHLHVLAPASQLGFLSRLIYRINSYWFI 42

GO:0003824 "catalytic activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CPS6	HINT3_MOUSE	3, ., -, ., -, ., -	0.4396	0.9075	0.6545	yes	N/A
Q2YDJ4	HINT3_BOVIN	3, ., -, ., -, ., -	0.3875	0.9915	0.6483	yes	N/A
Q8K3P7	HINT3_RAT	3, ., -, ., -, ., -	0.4122	0.9243	0.6285	yes	N/A
Q28BZ2	HINT3_XENTR	3, ., -, ., -, ., -	0.4476	0.8571	0.6666	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
cd01278	104	cd01278, aprataxin_related, aprataxin related: Apr	2e-19
pfam11969	113	pfam11969, DcpS_C, Scavenger mRNA decapping enzyme	1e-17
cd01276	104	cd01276, PKCI_related, Protein Kinase C Interactin	2e-07
pfam01230	97	pfam01230, HIT, HIT domain	1e-05
cd01277	103	cd01277, HINT_subgroup, HINT (histidine triad nucl	3e-05
COG0537	138	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy	5e-05
cd00468	86	cd00468, HIT_like, HIT family: HIT (Histidine tria	6e-05

>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

 Score = 76.3 bits (188), Expect = 2e-19
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLE------DLSAITYLCL 72
           D+ VV F DI P A+HH LVI K+H+ + K LT E   L++ +E       L +      
Sbjct: 22  DDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPS 81

Query: 73  MVIFHRYGFHWPPFYSIGHLHLHVIA 98
              F   GFH PPF S+ HLHLHVIA
Sbjct: 82  EFRF---GFHAPPFTSVSHLHLHVIA 104

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin. Length = 104

>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding

 Score = 71.8 bits (177), Expect = 1e-17
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT----YLCLMV 74
           D+  VAF DIKP A  H LVI K+H+ + + LT EH  L+  + +++       Y     
Sbjct: 20  DDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLGHMREVAKKIAKEKYNEGYR 79

Query: 75  IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKII 110
              R GFH+ P     HLHLHVIAP  E     K+ 
Sbjct: 80  DVLRLGFHYGPSVY--HLHLHVIAPDFEPGLGRKLG 113

This family consists of several scavenger mRNA decapping enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger pyrophosphatase that hydrolyses the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. The C-terminal domain contains a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. The central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function. Length = 113

>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 5  SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          +K +++        D++V+AF DI P A  H LVI K+H+ +    T E + L+
Sbjct: 14 AKKVYE--------DDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELL 59

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members. Length = 104

>gnl|CDD|216377 pfam01230, HIT, HIT domain

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLT--------SEHKALVQWLEDLSAITYL 70
          D+ V+AF DI P A  H LVI K+H+     LT        SE K + + L    A  Y 
Sbjct: 12 DDLVLAFLDIDPQAPGHVLVIPKKHITELHDLTPEELGDLMSEAKKVARALGKAKADGYR 71

Query: 71 CLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
           ++      G       S+ HLH+HVI 
Sbjct: 72 IVINN----GAAAGQ--SVPHLHIHVIP 93

Length = 97

>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLN 46
          D+ V+AF DI PA+K HTLVI K+H  N
Sbjct: 20 DDHVLAFLDINPASKGHTLVIPKKHYEN 47

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression. Length = 103

>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 1   MSFLSKIIFKPNTWWFVTDND-VVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQ 59
           M    KII        V +++ V+AF DI PAA  HTLVI K+HV +   L       + 
Sbjct: 2   MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSD---LEDLDPEELA 58

Query: 60  WLEDLSAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
            L  L+      L   F   G++            + HLH+H+I 
Sbjct: 59  ELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIP 103

Length = 138

>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 16 FVTDNDVVAFPDIKPAAKHHTLVISKQHVLN----AKVLTSEHKALVQ----WLEDLSAI 67
             D    AF ++KPAA  H LV  K+HV       + L ++     Q     LE    +
Sbjct: 1  VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNV 60

Query: 68 TYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
            L + V             S+ H+HLHV+ 
Sbjct: 61 PSLTVFV-----NDGAAAGQSVPHVHLHVLP 86

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PRK10687	119	purine nucleoside phosphoramidase; Provisional	100.0
cd01276	104	PKCI_related Protein Kinase C Interacting protein	100.0
COG0537	138	Hit Diadenosine tetraphosphate (Ap4A) hydrolase an	100.0
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	100.0
KOG3275|consensus	127		99.98
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	99.98
cd01278	104	aprataxin_related aprataxin related: Aprataxin, a	99.97
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	99.96
KOG4359|consensus	166		99.95
PF11969	116	DcpS_C: Scavenger mRNA decapping enzyme C-term bin	99.94
PRK11720	346	galactose-1-phosphate uridylyltransferase; Provisi	99.94
TIGR00209	347	galT_1 galactose-1-phosphate uridylyltransferase,	99.93
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	99.93
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	99.93
PLN02643	336	ADP-glucose phosphorylase	99.91
KOG3379|consensus	150		99.9
PF02744	166	GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf	99.75
COG1085	338	GalT Galactose-1-phosphate uridylyltransferase [En	99.69
KOG2958|consensus	354		99.55
PF04677	121	CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In	99.24
KOG0562|consensus	184		99.2
KOG2476|consensus	528		98.83
KOG3969|consensus	310		98.55
PLN03103	403	GDP-L-galactose-hexose-1-phosphate guanyltransfera	98.49
KOG2720|consensus	431		98.01
KOG2477|consensus	628		97.67
TIGR00672	250	cdh CDP-diacylglycerol pyrophosphatase, bacterial	97.45
PRK05471	252	CDP-diacylglycerol pyrophosphatase; Provisional	97.4
PF02611	222	CDH: CDP-diacylglycerol pyrophosphatase; InterPro:	97.32
COG5075	305	Uncharacterized conserved protein [Function unknow	97.27
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	96.9
COG2134	252	Cdh CDP-diacylglycerol pyrophosphatase [Lipid meta	96.73
COG4360	298	APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr	96.11
PLN02643	336	ADP-glucose phosphorylase	95.78
COG1085	338	GalT Galactose-1-phosphate uridylyltransferase [En	95.11
TIGR00209	347	galT_1 galactose-1-phosphate uridylyltransferase,	94.69
PRK11720	346	galactose-1-phosphate uridylyltransferase; Provisi	94.64
PF01087	183	GalP_UDP_transf: Galactose-1-phosphate uridyl tran	88.29

>PRK10687 purine nucleoside phosphoramidase; Provisional

Probab=100.00  E-value=2.8e-35  Score=192.82  Aligned_cols=101  Identities=22%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH--hcCCCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL--CLMVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~--~~~~~~~   77 (119)
                      .|+||+|++ |.|..+|||||.++||.|.+|.++||+||+||+|++++.+|+++++.++..++..++++++  .++.++|
T Consensus         4 ~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~   83 (119)
T PRK10687          4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY   83 (119)
T ss_pred             CCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence            499999999 9999999999999999999999999999999999999999999999999999999988875  5678899


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~  101 (119)
                      ++++|+|+  ||+|+|+|+|||||+.
T Consensus        84 ~l~~n~G~~agQ~V~HlHiHvI~g~~  109 (119)
T PRK10687         84 RLIMNTNRHGGQEVYHIHMHLLGGRP  109 (119)
T ss_pred             EEEEeCCCcCCcccCEEEEEECCCcc
Confidence            99999984  9999999999999866

>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

Probab=100.00  E-value=1e-33  Score=180.88  Aligned_cols=99  Identities=29%  Similarity=0.266  Sum_probs=93.5

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC--CCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM--VIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~--~~~~   77 (119)
                      .|+||+|++ |.+.++|+||+.++||+|.+|.+|||+||+||+|++++.+|+++++.+++.+++.++++.+.++  ..+|
T Consensus         1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (104)
T cd01276           1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY   80 (104)
T ss_pred             CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            599999999 8889999999999999999999999999999999999999999999999999999998888765  6899


Q ss_pred             EEEEeCCC--CCccceeEEEEecC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAP   99 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~   99 (119)
                      ++++|+|+  ||+++|+|+|||++
T Consensus        81 n~~~~~g~~~g~~v~H~HiHii~~  104 (104)
T cd01276          81 RLVINCGKDGGQEVFHLHLHLLGG  104 (104)
T ss_pred             EEEEeCCCCCCCceeEEEEEEeCC
Confidence            99999986  89999999999974

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.

>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=186.06  Aligned_cols=101  Identities=32%  Similarity=0.294  Sum_probs=91.2

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      +|+||+|++ |.++.+||||++++||+|.+|.++||+||+||+|+.++.+|+++++..+..+.+.+.+.++ .++++|||
T Consensus         2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n   81 (138)
T COG0537           2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN   81 (138)
T ss_pred             CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            699999999 9999999999999999999999999999999999999999999998777776665544444 77789999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~  101 (119)
                      +++|+|.  ||+|+|+|+|||||+.
T Consensus        82 i~~N~g~~agq~V~HlH~HvIPr~~  106 (138)
T COG0537          82 IGINNGKAAGQEVFHLHIHIIPRYK  106 (138)
T ss_pred             EEEecCcccCcCcceEEEEEcCCcC
Confidence            9999974  8999999999999866

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=100.00  E-value=4.7e-32  Score=172.66  Aligned_cols=99  Identities=30%  Similarity=0.246  Sum_probs=90.9

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      +|+||+|++ |.+.++|+|+++++||.|.+|.+|||++|+||+|++++.+|+++|+.+|+.+++.+.+.++ .+++.+||
T Consensus         1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   80 (103)
T cd01277           1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN   80 (103)
T ss_pred             CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            599999999 8888899999999999999999999999999999999999999999999988886655555 67788999


Q ss_pred             EEEeCCC--CCccceeEEEEecC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAP   99 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~   99 (119)
                      +++|+++  ||+++|+|+||+||
T Consensus        81 ~~~~~~~~~g~~~~H~HiHiiPR  103 (103)
T cd01277          81 ILQNNGRAAGQVVFHVHVHVIPR  103 (103)
T ss_pred             EEEeCCcccCcccCEEEEEEccC
Confidence            9999875  89999999999986

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>KOG3275|consensus

Probab=99.98  E-value=7.1e-32  Score=172.23  Aligned_cols=105  Identities=26%  Similarity=0.270  Sum_probs=95.0

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCC-CceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV-IFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~-~~~~   78 (119)
                      +|+||+|++ |.|..+|||||.+.||.|+.|.+|||+|||||+|++.++.+.+.+.++|+.+|.++++++++++- +|||
T Consensus        17 ~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYr   96 (127)
T KOG3275|consen   17 PTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYR   96 (127)
T ss_pred             CcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccccee
Confidence            599999999 99999999999999999999999999999999998888888777778899999999999997764 6799


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSEMSFL  106 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~~  106 (119)
                      +.+|+|.  .|+|+|+|+|++|+ .+++|.
T Consensus        97 vv~NnG~~g~QsV~HvH~HvlgG-rqm~WP  125 (127)
T KOG3275|consen   97 VVQNNGKDGHQSVYHVHLHVLGG-RQMQWP  125 (127)
T ss_pred             EEEcCCcccceEEEEEEEEEeCC-cccCCC
Confidence            9999997  79999999999974 456553

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=99.98  E-value=2.6e-31  Score=175.36  Aligned_cols=101  Identities=19%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             Cccccccc-CCC-ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          2 SFLSKIIF-KPN-TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         2 c~fc~ii~-e~~-~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      |+||+|++ |.+ +++|+|++.++|++|.+|.++||+||+||+|++++.+|+++|+.+++.++..+.+.++ .++..+|+
T Consensus         1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   80 (126)
T cd01275           1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN   80 (126)
T ss_pred             CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            99999999 765 7999999999999999999999999999999999999999999999888887666666 66778999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~  102 (119)
                      +++|+++  ||+++|+|+|||||..+
T Consensus        81 ~~~~~g~~~gq~v~H~HiHiiPR~~~  106 (126)
T cd01275          81 IGINDGKAGGGIVPHVHIHIVPRWNG  106 (126)
T ss_pred             EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence            9999987  89999999999998543

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

Probab=99.97  E-value=2.7e-31  Score=169.83  Aligned_cols=98  Identities=40%  Similarity=0.595  Sum_probs=90.0

Q ss_pred             CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-h--cCC
Q psy14209          1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-C--LMV   74 (119)
Q Consensus         1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~--~~~   74 (119)
                      .|+||+|++ |.  ++++|+||+.++||.|++|.+|||+||+||+|+.++.+|+++++++++++++.+.+.++ .  +++
T Consensus         1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~   80 (104)
T cd01278           1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP   80 (104)
T ss_pred             CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            499999998 65  68999999999999999999999999999999999999999999999999998877554 2  567


Q ss_pred             CceEEEEeCCCCCccceeEEEEec
Q psy14209         75 IFHRYGFHWPPFYSIGHLHLHVIA   98 (119)
Q Consensus        75 ~~~~~~~~~~~~q~v~HlH~Hiip   98 (119)
                      .+||+|+|.+|.|+++|+|+|||.
T Consensus        81 ~~~n~g~h~~p~~~v~H~H~Hvi~  104 (104)
T cd01278          81 SEFRFGFHAPPFTSVSHLHLHVIA  104 (104)
T ss_pred             cCeEEEeCCCCCcCeeeEEEEeeC
Confidence            899999999999999999999983

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=99.96  E-value=2.8e-28  Score=154.43  Aligned_cols=92  Identities=29%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--C
Q psy14209         10 KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--F   86 (119)
Q Consensus        10 e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~   86 (119)
                      |.++++|||||.++||+|.+|.++||+||+||+|++++.+|+++++..+..+++.+.+.++ .++.++|+++.++++  |
T Consensus         3 e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~g   82 (98)
T PF01230_consen    3 EIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAG   82 (98)
T ss_dssp             SSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGT
T ss_pred             CCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhc
Confidence            6789999999999999999999999999999999999999999998888877776555555 778899999999875  9


Q ss_pred             CccceeEEEEecCCC
Q psy14209         87 YSIGHLHLHVIAPVS  101 (119)
Q Consensus        87 q~v~HlH~Hiip~~~  101 (119)
                      |+++|+|+|||||++
T Consensus        83 q~v~HlH~HviPR~~   97 (98)
T PF01230_consen   83 QSVPHLHFHVIPRYK   97 (98)
T ss_dssp             SSSSS-EEEEEEEST
T ss_pred             CccCEEEEEEecccC
Confidence            999999999999754

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>KOG4359|consensus

Probab=99.95  E-value=2.4e-27  Score=155.83  Aligned_cols=118  Identities=41%  Similarity=0.733  Sum_probs=106.9

Q ss_pred             CCccccccc-C-CC-ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCC
Q psy14209          1 MSFLSKIIF-K-PN-TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMV   74 (119)
Q Consensus         1 ~c~fc~ii~-e-~~-~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~   74 (119)
                      .|.||+|+. . .+ .-...|++.+++|.|++|.+.-|.|++||+|+.+..+|+.++..++.+|+.+++.+++   ....
T Consensus        32 ~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~  111 (166)
T KOG4359|consen   32 TCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDF  111 (166)
T ss_pred             ceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCc
Confidence            499999998 4 33 4456899999999999999999999999999999999999999999999999998887   3345


Q ss_pred             CceEEEEeCCCCCccceeEEEEecCCCCCCCceeeeeccCccccC
Q psy14209         75 IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV  119 (119)
Q Consensus        75 ~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~~~~~~~~~~~w~~  119 (119)
                      +..++|||.+|.-||.|||+|+|-|..||+|.+|+.|.| |.||+
T Consensus       112 ~~~r~GFHLPPf~SV~HLHlH~I~P~~DMgf~sKl~FrP-s~wFK  155 (166)
T KOG4359|consen  112 TNVRMGFHLPPFCSVSHLHLHVIAPVDDMGFLSKLVFRP-SYWFK  155 (166)
T ss_pred             hheeEeccCCCcceeeeeeEeeecchHHhchhheeEeec-ceEee
Confidence            678999999999999999999999999999999999999 99985

>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B

Probab=99.94  E-value=3.8e-27  Score=153.74  Aligned_cols=105  Identities=35%  Similarity=0.480  Sum_probs=87.4

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecC-ccCCccCCCHhHHHHHHHHHHHHHHHHHhc-----C
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQ-HVLNAKVLTSEHKALVQWLEDLSAITYLCL-----M   73 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~-H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~-----~   73 (119)
                      +|+||.|++ |.+++++|||+.+++|.|.+|.++.|+||+||+ |+.++.+|++++.++|..|...++++++..     .
T Consensus         1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~   80 (116)
T PF11969_consen    1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD   80 (116)
T ss_dssp             HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred             CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            499999999 889999999999999999999999999999999 999999999999999999999999999822     3


Q ss_pred             CCceEEEEeCCCCCccceeEEEEecCCCCCCCce
Q psy14209         74 VIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLS  107 (119)
Q Consensus        74 ~~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~~  107 (119)
                      ...+++|||.+|  |+.|||+|+|.+..++++.+
T Consensus        81 ~~~~~~gfH~~P--S~~HLHlHvi~~~~~s~~lk  112 (116)
T PF11969_consen   81 SDDIRLGFHYPP--SVYHLHLHVISPDFDSPCLK  112 (116)
T ss_dssp             GGGEEEEEESS---SSSS-EEEEEETTS--TTSB
T ss_pred             hhhhcccccCCC--CcceEEEEEccCCCcCcccc
Confidence            568999999998  99999999998766665554

>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional

Probab=99.94  E-value=2.1e-26  Score=174.05  Aligned_cols=99  Identities=20%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             CCccccccc-CCC--ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcC-CC
Q psy14209          1 MSFLSKIIF-KPN--TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLM-VI   75 (119)
Q Consensus         1 ~c~fc~ii~-e~~--~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~-~~   75 (119)
                      .|+||+|++ |.+  +++|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.++ .++ ..
T Consensus       195 ~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~  274 (346)
T PRK11720        195 SPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSF  274 (346)
T ss_pred             CeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            499999999 765  6999999999999999999999999999999999999999999888888775544444 564 34


Q ss_pred             ceEEEEeCCC----CCccceeEEEEecC
Q psy14209         76 FHRYGFHWPP----FYSIGHLHLHVIAP   99 (119)
Q Consensus        76 ~~~~~~~~~~----~q~v~HlH~Hiip~   99 (119)
                      +|++++|++|    +|+++|+|+||+||
T Consensus       275 pyn~~~h~~p~~~~~~~~~H~HihiiPr  302 (346)
T PRK11720        275 PYSMGWHGAPFNGEENDHWQLHAHFYPP  302 (346)
T ss_pred             CCceeEEecccCCCCCeeEEEEEEEeCC
Confidence            7999999986    46899999999998

>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1

Probab=99.93  E-value=4.7e-26  Score=172.25  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCC-C
Q psy14209          1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMV-I   75 (119)
Q Consensus         1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~-~   75 (119)
                      .|+||+|++ |.  +.++|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.++ .++. .
T Consensus       195 ~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~  274 (347)
T TIGR00209       195 SPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSF  274 (347)
T ss_pred             CccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            499999999 75  68999999999999999999999999999999999999999999999888876554444 5644 4


Q ss_pred             ceEEEEeCCC--C--CccceeEEEEecC
Q psy14209         76 FHRYGFHWPP--F--YSIGHLHLHVIAP   99 (119)
Q Consensus        76 ~~~~~~~~~~--~--q~v~HlH~Hiip~   99 (119)
                      +||+++|++|  +  +..+|+|+||+||
T Consensus       275 pYn~~~h~~p~~~~~~~~~H~HihiiPr  302 (347)
T TIGR00209       275 PYSMGWHGAPFNGEENQHWQLHAHFYPP  302 (347)
T ss_pred             CcceeEEecccCCCCCcEEEEEEEEeCC
Confidence            8999999986  3  4667899999998

This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=99.93  E-value=1.2e-25  Score=169.20  Aligned_cols=101  Identities=17%  Similarity=0.114  Sum_probs=89.2

Q ss_pred             CCccccccc-CCC--ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcC-CC
Q psy14209          1 MSFLSKIIF-KPN--TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLM-VI   75 (119)
Q Consensus         1 ~c~fc~ii~-e~~--~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~-~~   75 (119)
                      .|+||+|++ |.+  .++|+|||.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.+. .++ ..
T Consensus       185 ~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~  264 (329)
T cd00608         185 RCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSF  264 (329)
T ss_pred             CccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            499999998 755  8999999999999999999999999999999999999999999999998886554444 666 56


Q ss_pred             ceEEEEeCCC------CCccceeEEEEecCCC
Q psy14209         76 FHRYGFHWPP------FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        76 ~~~~~~~~~~------~q~v~HlH~Hiip~~~  101 (119)
                      +||+++|.+|      +|.++|+|+|++||++
T Consensus       265 pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~  296 (329)
T cd00608         265 PYSMGWHQAPTGGKELENWYYHWHFEIPPRRS  296 (329)
T ss_pred             CeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence            8999999876      3689999999999865

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=99.93  E-value=3.9e-25  Score=136.27  Aligned_cols=83  Identities=28%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             EEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCcccee
Q psy14209         16 FVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYSIGHL   92 (119)
Q Consensus        16 v~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~v~Hl   92 (119)
                      +||||.++||.|++|.++||+||+||+|+.++.+|+++++..+..+++...+.++ ..+.++|++.+|.++  ||+++|+
T Consensus         1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~   80 (86)
T cd00468           1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV   80 (86)
T ss_pred             CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence            6899999999999999999999999999999999999998777777664433333 567789999999985  8999999


Q ss_pred             EEEEec
Q psy14209         93 HLHVIA   98 (119)
Q Consensus        93 H~Hiip   98 (119)
                      |+||||
T Consensus        81 H~hiiP   86 (86)
T cd00468          81 HLHVLP   86 (86)
T ss_pred             EEEeCC
Confidence            999997

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>PLN02643 ADP-glucose phosphorylase

Probab=99.91  E-value=3.6e-24  Score=161.48  Aligned_cols=99  Identities=13%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~~~~~   78 (119)
                      .|+||+|++ |.   +|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++|+..|+.+++. ++++.+.++..+||
T Consensus       199 ~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN  275 (336)
T PLN02643        199 KCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYN  275 (336)
T ss_pred             CCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence            499999999 76   99999999999999999999999999999999999999999999998874 44555566777999


Q ss_pred             EEEeCCC----CC--ccceeEEEEecCCCC
Q psy14209         79 YGFHWPP----FY--SIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~----~q--~v~HlH~Hiip~~~~  102 (119)
                      +++|++|    +|  ...|+|+||+||...
T Consensus       276 ~~~~~~P~~~~~~~~~~~H~hihi~PRl~~  305 (336)
T PLN02643        276 YMIQTSPLGVEESNLPYTHWFLQIVPQLSG  305 (336)
T ss_pred             eeeecCCCccccCcccceEEEEEEecCcCC
Confidence            9999987    34  445666799998654

>KOG3379|consensus

Probab=99.90  E-value=2.8e-23  Score=136.21  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYS   88 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~   88 (119)
                      +..++|+++..+||.+..|..|||+||+|+|-+.++.||+++|.++|...++.+.+.++ .++....++++..|+  ||+
T Consensus        16 ~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQT   95 (150)
T KOG3379|consen   16 PDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQT   95 (150)
T ss_pred             cceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcc
Confidence            47899999999999999999999999999999999999999998888887777777777 666778999999986  999


Q ss_pred             cceeEEEEecCCCCCCCceeeeecc
Q psy14209         89 IGHLHLHVIAPVSEMSFLSKIIFKP  113 (119)
Q Consensus        89 v~HlH~Hiip~~~~~~~~~~~~~~~  113 (119)
                      |+|+|+||+||+.....-+..+|..
T Consensus        96 VpHvHvHIlPR~~gDf~~Nd~IY~~  120 (150)
T KOG3379|consen   96 VPHVHVHILPRKAGDFGDNDLIYDE  120 (150)
T ss_pred             cceeEEEEccccccccccchHHHHH
Confidence            9999999998765433333466654

>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism

Probab=99.75  E-value=6.4e-18  Score=116.40  Aligned_cols=99  Identities=15%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             CCccccccc-C--CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHH-HHHHHhcC-CC
Q psy14209          1 MSFLSKIIF-K--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLM-VI   75 (119)
Q Consensus         1 ~c~fc~ii~-e--~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~-~~~~~~~~-~~   75 (119)
                      .|+||++++ |  ...|||+++++|+++.|..+++|++++|+||+|+.++.+|+++|...|+.++..+ +++-+.++ ..
T Consensus        14 s~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~   93 (166)
T PF02744_consen   14 SCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSF   93 (166)
T ss_dssp             S-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred             CchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCC
Confidence            599999998 6  4689999999999999999999999999999999999999999999998877743 44333454 46


Q ss_pred             ceEEEEeCCCCCc---cceeEEEEecC
Q psy14209         76 FHRYGFHWPPFYS---IGHLHLHVIAP   99 (119)
Q Consensus        76 ~~~~~~~~~~~q~---v~HlH~Hiip~   99 (119)
                      +|++|+|+.|.++   -.++|+|+-|+
T Consensus        94 pY~m~ihqaP~~~~~~~~~fH~H~e~~  120 (166)
T PF02744_consen   94 PYNMGIHQAPVNGEDPEHWFHPHFEPP  120 (166)
T ss_dssp             -EEEEEE---SSSS--TT--EEEEE--
T ss_pred             CCchhhhcCCCCcccchhhhhcccccc
Confidence            9999999988322   12366666653

The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.

>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=99.69  E-value=1.4e-16  Score=119.34  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCC-C
Q psy14209          1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMV-I   75 (119)
Q Consensus         1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~-~   75 (119)
                      .|.+|++++ |.  .+|+|.|+|.++|++|+.+.+|++++|+||+|+..+.++++++.++|+.+++...+-.. .++. .
T Consensus       186 ~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~f  265 (338)
T COG1085         186 SCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSF  265 (338)
T ss_pred             CchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            499999999 75  47999999999999999999999999999999999999999998888887665433333 3333 3


Q ss_pred             ceEEEEeCCCC---CccceeEEEEecC
Q psy14209         76 FHRYGFHWPPF---YSIGHLHLHVIAP   99 (119)
Q Consensus        76 ~~~~~~~~~~~---q~v~HlH~Hiip~   99 (119)
                      .|+|++|..++   +.-.|+|+|++||
T Consensus       266 pY~m~~h~ap~~~~~~~~~~h~~~~p~  292 (338)
T COG1085         266 PYSMGFHQAPFNEVNEHYHLHAEIYPP  292 (338)
T ss_pred             ceeeeeecCCCCcccccceEEEEEccc
Confidence            79999999873   5788999999994

>KOG2958|consensus

Probab=99.55  E-value=5.8e-15  Score=108.06  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             Cccccccc-C--CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCC-Cc
Q psy14209          2 SFLSKIIF-K--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMV-IF   76 (119)
Q Consensus         2 c~fc~ii~-e--~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~-~~   76 (119)
                      |++-+.++ |  .+.+||.|+++|+++.|+...+|+++|+|||+|++++.+|++.+..+|+.+++. ..++.+.++. .+
T Consensus       201 ~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfP  280 (354)
T KOG2958|consen  201 CLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFP  280 (354)
T ss_pred             chHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCc
Confidence            66767777 6  468999999999999999999999999999999999999999999999998874 5666655554 68


Q ss_pred             eEEEEeCCC-C---C-ccce-eEEEEecC
Q psy14209         77 HRYGFHWPP-F---Y-SIGH-LHLHVIAP   99 (119)
Q Consensus        77 ~~~~~~~~~-~---q-~v~H-lH~Hiip~   99 (119)
                      |+||+|.+| |   + -..| +|+|..||
T Consensus       281 Ysmg~h~aPl~~t~~e~~n~W~h~hFypp  309 (354)
T KOG2958|consen  281 YSMGIHGAPLGSTEQENYNHWLHMHFYPP  309 (354)
T ss_pred             cccccccCCcccccccccchhhhhhcccc
Confidence            999999887 2   1 1223 69999997

>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues

Probab=99.24  E-value=3.8e-10  Score=74.07  Aligned_cols=92  Identities=12%  Similarity=0.047  Sum_probs=74.0

Q ss_pred             CCccccccc-C-CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCc--
Q psy14209          1 MSFLSKIIF-K-PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIF--   76 (119)
Q Consensus         1 ~c~fc~ii~-e-~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~--   76 (119)
                      .|.||- -+ + ...-||.-++.+++.++..|..+||++|+|-+|..++.+++++.++++....+.++++.+..+.+-  
T Consensus        12 ~C~fCl-~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~~vvf   90 (121)
T PF04677_consen   12 NCWFCL-SNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGKDVVF   90 (121)
T ss_pred             CCCCcc-CCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            599993 44 4 346789999999999999999999999999999999999999999999988888888877544321  


Q ss_pred             eEEEEeCCCCCccceeEEEEec
Q psy14209         77 HRYGFHWPPFYSIGHLHLHVIA   98 (119)
Q Consensus        77 ~~~~~~~~~~q~v~HlH~Hiip   98 (119)
                      |...     .....|.|+++||
T Consensus        91 ~E~~-----~~~~~H~~iq~vP  107 (121)
T PF04677_consen   91 FERV-----RKRNPHTHIQCVP  107 (121)
T ss_pred             EEEe-----CCCCcEEEEEEEE
Confidence            2222     3456799999998

Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.

>KOG0562|consensus

Probab=99.20  E-value=3.4e-11  Score=81.82  Aligned_cols=88  Identities=28%  Similarity=0.388  Sum_probs=72.5

Q ss_pred             CCCceEEEEC-CcEEEEecCCCCCCeeEEEEec-CccCCccCCCHhHHHHHHHHHHHHHHHHHhcC----CCceEEEEeC
Q psy14209         10 KPNTWWFVTD-NDVVAFPDIKPAAKHHTLVISK-QHVLNAKVLTSEHKALVQWLEDLSAITYLCLM----VIFHRYGFHW   83 (119)
Q Consensus        10 e~~~~iv~e~-~~~~a~~~~~p~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~   83 (119)
                      +.+.+++.|+ |.++++.|.+|.+..|+||+|| .-+.++.++..+++.+|.++-.++..+...+.    ...|++|||.
T Consensus        12 ~k~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Ha   91 (184)
T KOG0562|consen   12 PKPENVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHA   91 (184)
T ss_pred             CccceeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeecc
Confidence            3456666666 7999999999999999999995 45788888888888888888877777776443    3578999999


Q ss_pred             CCCCccceeEEEEecC
Q psy14209         84 PPFYSIGHLHLHVIAP   99 (119)
Q Consensus        84 ~~~q~v~HlH~Hiip~   99 (119)
                      .|  |+.++|+|||..
T Consensus        92 vP--SM~~LHLHVISk  105 (184)
T KOG0562|consen   92 VP--SMNNLHLHVISK  105 (184)
T ss_pred             Cc--chhheeEEEeec
Confidence            88  999999999974

>KOG2476|consensus

Probab=98.83  E-value=5.5e-08  Score=75.57  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=73.9

Q ss_pred             CCccccccc-CC-CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceE
Q psy14209          1 MSFLSKIIF-KP-NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~-~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~   78 (119)
                      .|.|| +.+ +. ..-||--++.|++-++..|.+.+|+||+|-.|++++..|+++.++++...-..++++.+..+.... 
T Consensus       320 ~CwFC-LSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~v-  397 (528)
T KOG2476|consen  320 SCWFC-LSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAV-  397 (528)
T ss_pred             ceEEE-ecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEE-
Confidence            59999 555 53 467889999999999999999999999999999999999999988888888888888776554321 


Q ss_pred             EEEeCCCCCccceeEEEEec
Q psy14209         79 YGFHWPPFYSIGHLHLHVIA   98 (119)
Q Consensus        79 ~~~~~~~~q~v~HlH~Hiip   98 (119)
                       .+-.... -.-|+|+.+||
T Consensus       398 -vfE~~~~-rs~Hlq~Qvip  415 (528)
T KOG2476|consen  398 -VFERQSY-RSVHLQLQVIP  415 (528)
T ss_pred             -EEEeecc-cceeeEEEEEe
Confidence             1111011 23499999998

>KOG3969|consensus

Probab=98.55  E-value=7.9e-07  Score=65.21  Aligned_cols=87  Identities=22%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             CCceEEEECC----cEEEEecCC--C--CCCeeEEEEe-cCccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCCCceE
Q psy14209         11 PNTWWFVTDN----DVVAFPDIK--P--AAKHHTLVIS-KQHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMVIFHR   78 (119)
Q Consensus        11 ~~~~iv~e~~----~~~a~~~~~--p--~~~gh~lViP-k~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~~~~~   78 (119)
                      ...+||||+.    .|+.+.|..  +  .-.-+++.|- |+-+.++.||++++++.|..+...++.++.   +++.+..+
T Consensus       158 E~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr  237 (310)
T KOG3969|consen  158 EDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR  237 (310)
T ss_pred             cccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence            3478999884    377777763  3  3355666665 455899999999999999999998887776   55677899


Q ss_pred             EEEeCCCCCccceeEEEEecC
Q psy14209         79 YGFHWPPFYSIGHLHLHVIAP   99 (119)
Q Consensus        79 ~~~~~~~~q~v~HlH~Hiip~   99 (119)
                      |-+|..|  |..|+|+||++-
T Consensus       238 mf~HYqP--SyYHlHVHi~ni  256 (310)
T KOG3969|consen  238 MFFHYQP--SYYHLHVHIVNI  256 (310)
T ss_pred             EEEEecC--ceEEEEEEEEec
Confidence            9999988  999999999973

>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional

Probab=98.49  E-value=5.7e-07  Score=69.36  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             CCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCccceeEEEEe
Q psy14209         19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWP-PFYSIGHLHLHVI   97 (119)
Q Consensus        19 ~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~v~HlH~Hii   97 (119)
                      +....++.+..|..+||+|++|+.--.-..-++++       ++..+..++...+..+|++|||.. +..++.|||+|..
T Consensus       168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~-------~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa~  240 (403)
T PLN03103        168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPD-------SFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQAY  240 (403)
T ss_pred             CCccEEEEeCCCCccCeEEEcCCcccCCCeEecHH-------HHHHHHHHHHhcCCCcEEEEecCCccccCcceeeeeec
Confidence            44457889999999999999987633323335553       223344444444567899999983 4569999999997


Q ss_pred             c
Q psy14209         98 A   98 (119)
Q Consensus        98 p   98 (119)
                      -
T Consensus       241 y  241 (403)
T PLN03103        241 Y  241 (403)
T ss_pred             c
Confidence            4

>KOG2720|consensus

Probab=98.01  E-value=6.6e-06  Score=62.20  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             EEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCccceeEEEEec
Q psy14209         23 VAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWP-PFYSIGHLHLHVIA   98 (119)
Q Consensus        23 ~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~v~HlH~Hiip   98 (119)
                      ++..+..|...||+||+|+----...-+|-+.       +..+-.++...+.+.|++|+|.. +..+|.|||+|..-
T Consensus       169 vvaIN~sPie~~H~LiiP~V~kc~pQrit~~a-------l~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y  238 (431)
T KOG2720|consen  169 VVAINVSPIEYGHVLIIPRVLKCLPQRITHKA-------LLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYY  238 (431)
T ss_pred             eEEEecCccccCcEEEecchhccCcceeeHHH-------HHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhh
Confidence            56667789999999999987655444445442       12233333344567799999985 46799999999963

>KOG2477|consensus

Probab=97.67  E-value=0.0007  Score=53.78  Aligned_cols=96  Identities=13%  Similarity=0.039  Sum_probs=68.0

Q ss_pred             CCcccccccCCC-ceEEEECCcEEEEecCC-CCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceE
Q psy14209          1 MSFLSKIIFKPN-TWWFVTDNDVVAFPDIK-PAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~e~~-~~iv~e~~~~~a~~~~~-p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~   78 (119)
                      .|++|==-...| ..||--+...++.+|.. +...||++|+|-+|..+-..|++..++++...+..+..+....+.+ ..
T Consensus       408 ~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d-vi  486 (628)
T KOG2477|consen  408 TCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD-VI  486 (628)
T ss_pred             hchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC-eE
Confidence            488993222444 56677777777777765 5889999999999999999999999888888777666666533322 11


Q ss_pred             EEEeCCC-CCccceeEEEEec
Q psy14209         79 YGFHWPP-FYSIGHLHLHVIA   98 (119)
Q Consensus        79 ~~~~~~~-~q~v~HlH~Hiip   98 (119)
                       -+-+.+ -+.-+|+-+|-||
T Consensus       487 -FyE~a~~l~rrpH~~IeCIP  506 (628)
T KOG2477|consen  487 -FYENAPSLQRRPHTAIECIP  506 (628)
T ss_pred             -EEeccCccccCCceeEEEee
Confidence             122222 3568999999998

>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type

Probab=97.45  E-value=0.00069  Score=49.45  Aligned_cols=81  Identities=12%  Similarity=0.072  Sum_probs=56.2

Q ss_pred             ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeCC
Q psy14209         13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHWP   84 (119)
Q Consensus        13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~   84 (119)
                      -..|-.+..++++.|.  ..|.|.|++|...++.+++   +++... ........++..+.     .+......+.+|..
T Consensus        54 C~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tp-nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~  130 (250)
T TIGR00672        54 CAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTP-NFFWLAWQARDFMSKKYGQPIPDRAVSLAINSR  130 (250)
T ss_pred             cceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCc-cHHHHHHHHhHHHHHhcCCCCChhheeEEecCC
Confidence            3445567888888887  6678999999999887764   333322 23333344544444     33445678899988


Q ss_pred             CCCccceeEEEE
Q psy14209         85 PFYSIGHLHLHV   96 (119)
Q Consensus        85 ~~q~v~HlH~Hi   96 (119)
                      .|.|..|||+||
T Consensus       131 ~gRSQnQLHIHI  142 (250)
T TIGR00672       131 TGRSQNHFHIHI  142 (250)
T ss_pred             CCcccccceeeH
Confidence            899999999998

Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.

>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional

Probab=97.40  E-value=0.00095  Score=48.75  Aligned_cols=83  Identities=10%  Similarity=-0.075  Sum_probs=55.5

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeC
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHW   83 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~   83 (119)
                      |-..|-....++++.|  +..|.|.|++|...++.+++   +++... ........++..+.     .+......+.+|.
T Consensus        54 PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tp-nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS  130 (252)
T PRK05471         54 PCAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTP-NYFALAWQARDFMSKKYGKPIPDSAVSLAINS  130 (252)
T ss_pred             CCeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCc-cHHHHHHHHhHHHHHhhCCCCChhheEEEecC
Confidence            3445556778888875  45677999999999877765   333322 22223333444443     4445667889998


Q ss_pred             CCCCccceeEEEEe
Q psy14209         84 PPFYSIGHLHLHVI   97 (119)
Q Consensus        84 ~~~q~v~HlH~Hii   97 (119)
                      ..|.|.++||+||=
T Consensus       131 ~~gRSQnQLHIHIs  144 (252)
T PRK05471        131 RYGRTQDQLHIHIS  144 (252)
T ss_pred             CCCccccceeeehh
Confidence            88899999999993

>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3

Probab=97.32  E-value=0.00092  Score=48.15  Aligned_cols=83  Identities=11%  Similarity=-0.060  Sum_probs=43.3

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHH-----HHHHHhcCCCceEEEEeC
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLS-----AITYLCLMVIFHRYGFHW   83 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~   83 (119)
                      |-..|-.+..++++.|  +..+.|.|++|...++.+++   +++.....++. ...+     +++-+.+....+.+++|.
T Consensus        25 pC~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~-AW~aR~~v~~~~g~~lpd~~lsLaINS  101 (222)
T PF02611_consen   25 PCAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFAD-AWQARGFVSQKLGKPLPDDDLSLAINS  101 (222)
T ss_dssp             TSSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHH-HHHTTHHHHHHHTS---GGGEEEEEB-
T ss_pred             CCeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHH-HHHhhHHHHHhcCCCCCccceEEEecC
Confidence            3345556777888886  45578999999999877764   34433323332 2222     333235556788999998


Q ss_pred             CCCCccceeEEEEe
Q psy14209         84 PPFYSIGHLHLHVI   97 (119)
Q Consensus        84 ~~~q~v~HlH~Hii   97 (119)
                      ..|.|..+||+||=
T Consensus       102 ~~gRsQdQLHIHis  115 (222)
T PF02611_consen  102 QYGRSQDQLHIHIS  115 (222)
T ss_dssp             GGG-S--S--EEEE
T ss_pred             ccCccccceEeEhh
Confidence            87889999999993

6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.

>COG5075 Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.00063  Score=49.48  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CCceEEEECCc----EEEEecCC--C--CCCeeEEEEec-CccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCCCceE
Q psy14209         11 PNTWWFVTDND----VVAFPDIK--P--AAKHHTLVISK-QHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMVIFHR   78 (119)
Q Consensus        11 ~~~~iv~e~~~----~~a~~~~~--p--~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~~~~~   78 (119)
                      ..++|+|||+.    |+++.|..  +  ...-|+++|-+ .-+.++.||...++..+..+-........   +++.+..+
T Consensus       153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~  232 (305)
T COG5075         153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELR  232 (305)
T ss_pred             ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeE
Confidence            45799999976    55566653  3  33456666554 46899999999987776664332211111   34456678


Q ss_pred             EEEeCCCCCccceeEEEEec
Q psy14209         79 YGFHWPPFYSIGHLHLHVIA   98 (119)
Q Consensus        79 ~~~~~~~~q~v~HlH~Hiip   98 (119)
                      +-+|..|  |..|+|+||+-
T Consensus       233 mfvHY~P--sYyhlHvHI~n  250 (305)
T COG5075         233 MFVHYQP--SYYHLHVHIVN  250 (305)
T ss_pred             EEEEecc--ceEEEEEEEEe
Confidence            8888877  99999999984

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=96.90  E-value=0.0085  Score=45.46  Aligned_cols=61  Identities=20%  Similarity=0.004  Sum_probs=41.2

Q ss_pred             eEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC---CCceEEEE-eCCC--CCccceeEEEEec
Q psy14209         35 HTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM---VIFHRYGF-HWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        35 h~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--~q~v~HlH~Hiip   98 (119)
                      .++|..-+|..++.+++.+++..+   +.+.++..+.+.   .-.|...| |.|+  |.|..|-|..|+.
T Consensus        95 eVii~sp~H~~~l~~~~~~~i~~v---~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a  161 (329)
T cd00608          95 EVICFSPDHNLTLAEMSVAEIREV---VEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA  161 (329)
T ss_pred             EEEEECCcccCChhhCCHHHHHHH---HHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence            677888999999999999985433   333333333222   23455555 4454  8999999999984

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]

Probab=96.73  E-value=0.0098  Score=42.47  Aligned_cols=83  Identities=8%  Similarity=-0.044  Sum_probs=53.6

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeC
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHW   83 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~   83 (119)
                      |-.-|-+...++++.|.+-  |...|++|..+++.+++   +++.. +.+-.....++....     .+...+..+.+|.
T Consensus        54 PCaeV~~~AG~av~Kd~~g--PlQyLLmPt~rItGiEsP~L~e~at-pNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs  130 (252)
T COG2134          54 PCAEVKPQAGYAVLKDRNG--PLQYLLMPTARITGIESPLLLEPAT-PNYFYLAWQARDFMSKKYGNPIPDSDVSLAINS  130 (252)
T ss_pred             CceeecCCCceEEEeccCC--CceeEeeeeecccCCcChhhcCCCC-ccHHHHHHHHHHHHHHHhCCCCCccceEEEecC
Confidence            3345666777777777653  44669999999887764   22222 223333445555444     3345577888887


Q ss_pred             CCCCccceeEEEEe
Q psy14209         84 PPFYSIGHLHLHVI   97 (119)
Q Consensus        84 ~~~q~v~HlH~Hii   97 (119)
                      .-|.+.+|+|+||=
T Consensus       131 ~~gRtQdqlHIHIS  144 (252)
T COG2134         131 KNGRTQDQLHIHIS  144 (252)
T ss_pred             ccCccccceEEEEE
Confidence            77889999999993

>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]

Probab=96.11  E-value=0.012  Score=43.03  Aligned_cols=67  Identities=16%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             EEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC--CCccceeEEEEec
Q psy14209         22 VVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        22 ~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~v~HlH~Hiip   98 (119)
                      ...+.+.+|..+.|+|||.|+--..=+.||..+   +..+    -+++.+++  | -+-+|.||  |.|.+|=|+.++|
T Consensus        94 h~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D---f~ta----~~vL~~ld--g-lvFYNsGp~aGaSq~HkHLQi~p  162 (298)
T COG4360          94 HKLLLNKFPVVDEHLLIVTREFEDQESALTLAD---FTTA----YAVLCGLD--G-LVFYNSGPIAGASQDHKHLQIVP  162 (298)
T ss_pred             HhhhhhcCCcccceeEEeehhhhhccccCCHHH---HHHH----HHHHhccc--c-eEEecCCCCcCcCCCccceeEee
Confidence            455678999999999999998554445577766   3332    22333332  3 23456665  8899999999997

>PLN02643 ADP-glucose phosphorylase

Probab=95.78  E-value=0.14  Score=39.08  Aligned_cols=62  Identities=19%  Similarity=0.108  Sum_probs=41.2

Q ss_pred             eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC---CCceEEEE-eCCC--CCccceeEEEEec
Q psy14209         34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM---VIFHRYGF-HWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--~q~v~HlH~Hiip   98 (119)
                      ..++|..-+|..++.+|+.+++..+   +.+-++....+.   .-.|...| |.|+  |.|.+|-|-.|+.
T Consensus       108 ~eVii~sp~H~~~l~~~~~~~i~~v---~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a  175 (336)
T PLN02643        108 HDVVIETPVHSVQLSDLPARHIGEV---LKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA  175 (336)
T ss_pred             EEEEEeCCccCCChHHCCHHHHHHH---HHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence            4577777889999999999985443   333333333232   22455555 4454  8999999999984

>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=95.11  E-value=0.21  Score=38.22  Aligned_cols=62  Identities=19%  Similarity=-0.072  Sum_probs=38.9

Q ss_pred             EEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceE-EEEeCCC--CCccceeEEEEec
Q psy14209         36 TLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHR-YGFHWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        36 ~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~q~v~HlH~Hiip   98 (119)
                      ++|..-.|-.++.+|+.++...+-.+.+ ..+++.+.- ...|. +..|.|.  |.|.+|.|..|+.
T Consensus        97 VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~-~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a  162 (338)
T COG1085          97 VIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYERE-KYKYVQIFENKGKAAGASLPHPHGQIVA  162 (338)
T ss_pred             EEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhcc-CcceEEeeeccCcccCccCCCCCcceee
Confidence            4555678999999999998544443322 233333321 12343 4445554  8999999999974

>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1

Probab=94.69  E-value=0.56  Score=36.06  Aligned_cols=62  Identities=15%  Similarity=-0.082  Sum_probs=41.8

Q ss_pred             eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhc-CCCceEEEEeC-CC--CCccceeEEEEec
Q psy14209         34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL-MVIFHRYGFHW-PP--FYSIGHLHLHVIA   98 (119)
Q Consensus        34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~q~v~HlH~Hiip   98 (119)
                      ..++|-.-+|-.++.+|+.+++..+-.+   -++-...+ ..-.|...|-| |.  |.|.+|-|-.|+.
T Consensus       106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~---~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a  171 (347)
T TIGR00209       106 SRVICFSPDHSKTLPELSVAALTEIVKT---WQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA  171 (347)
T ss_pred             EEEEEeCCCccCChhHCCHHHHHHHHHH---HHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence            5677888899999999999996544333   22222222 22346666644 53  8999999999984

This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.

>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional

Probab=94.64  E-value=0.38  Score=36.93  Aligned_cols=62  Identities=16%  Similarity=-0.110  Sum_probs=42.1

Q ss_pred             eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCC-CceEEEEeC-CC--CCccceeEEEEec
Q psy14209         34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV-IFHRYGFHW-PP--FYSIGHLHLHVIA   98 (119)
Q Consensus        34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--~q~v~HlH~Hiip   98 (119)
                      ..++|..-+|..++.+|+.+++..+-.   +-++..+.+.. -.|...|-| |+  |.|..|-|-.|+.
T Consensus       106 ~eViv~sp~H~~~l~~~~~~~i~~v~~---~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a  171 (346)
T PRK11720        106 SRVICFSPDHSKTLPELSVAALREVVD---TWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA  171 (346)
T ss_pred             EEEEEECCCcCCChhHCCHHHHHHHHH---HHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence            567888899999999999998544433   33333332222 455555544 54  8999999999984

>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism

Probab=88.29  E-value=2.7  Score=29.22  Aligned_cols=64  Identities=14%  Similarity=-0.078  Sum_probs=35.4

Q ss_pred             eEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeC-CC--CCccceeEEEEec
Q psy14209         35 HTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHW-PP--FYSIGHLHLHVIA   98 (119)
Q Consensus        35 h~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~q~v~HlH~Hiip   98 (119)
                      .++|-.-+|-.++.+|+.++...+..+.....+-+..-+.-.|.+.|-| |.  |.+..|-|-.|+.
T Consensus       112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a  178 (183)
T PF01087_consen  112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA  178 (183)
T ss_dssp             EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred             EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence            6677778888999999999965444432211111112223356666644 53  7899999999984

The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
1xqu_A	147	Hit Family Hydrolase From Clostridium Thermocellum		9e-05
3l7x_A	173	The Crystal Structure Of Smu.412c From Streptococcu		2e-04

>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393 Length = 147

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 6   KIIFK--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVL--------NAKVLTSEHK 55
           KII +  P+T ++  D  V+A  DI PAA  H L+I K+H+         NA++L   HK
Sbjct: 41  KIIKRELPSTIYY-EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK 99
Query: 56  ALVQWLEDLS 65
           A  +  EDL 
Sbjct: 100 AANKVAEDLG 109

>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus Mutans Ua159 Length = 173

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA 56
          D DV+AF DI  A K HTLVI K+HV NA  +T    A
Sbjct: 56 DEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAA 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	1e-11
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	6e-09
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	1e-08
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	1e-08
3oj7_A	117	Putative histidine triad family protein; hydrolase	2e-08
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	2e-08
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	2e-08
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	2e-08
4egu_A	119	Histidine triad (HIT) protein; structural genomics	2e-08
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	3e-08
3imi_A	147	HIT family protein; structural genomics, infectiou	3e-08
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	5e-08
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	5e-08
3r6f_A	135	HIT family protein; structural genomics, seattle s	1e-07
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	2e-07
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	5e-07
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	5e-06
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	8e-06
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	4e-05

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)

Query: 1   MSF---LSKIIFKPNTWWFV--TDNDVVAFPDIKPAAKHHTLVISKQ---HVLNAKVLTS 52
           MSF   L   I  P ++  V   D+DVV   D+ P +K H L++++      ++   +  
Sbjct: 4   MSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM 63

Query: 53  EHKALVQWLEDLSAITYLCLMV-----------------IFHRYGFHWPPFYSIGHLHLH 95
           +H++LV+ L          L+                   + + GFH  P  S+ +LHLH
Sbjct: 64  KHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGP--SMNNLHLH 121

Query: 96  VIAP--VSEMSFLSKIIFKPNTWWFV 119
           ++    VS     S       + +FV
Sbjct: 122 IMTLDHVSPSLKNSAHYISFTSPFFV 147

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Length = 149

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D + +   DI+P  + HTLVI K H ++      E  A +
Sbjct: 25 DENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGM 64

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} Length = 149

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
           +  +AF DI P ++ H LVI K+H      L  E  A V
Sbjct: 31 TSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADV 70

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D  V+A  DI PAA  H L+I K+H+ N K +   +  ++
Sbjct: 55 DERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQIL 94

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* 3oxk_A* Length = 117

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D+++ AF DI P A  H LVI KQH+ +   +T E++A +
Sbjct: 27 DDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFI 66

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Length = 145

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D  V+AF DI    K HTLVI K H+ N    T E     
Sbjct: 25 DEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQY 64

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Length = 173

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D DV+AF DI  A K HTLVI K+HV NA  +T    A +
Sbjct: 56 DEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANL 95

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A* Length = 119

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D+ V AF DI P A  H L+I    +     +++EH+  +
Sbjct: 23 DDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Length = 119

 Score = 47.5 bits (114), Expect = 2e-08
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D+ V+AF D+ P A +H LV+ K+H  +   +  +   +V
Sbjct: 24 DDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIV 63

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Length = 126

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D+  +AF DI P A  H LVI K+H+          ++L+
Sbjct: 35 DDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} Length = 147

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D  V+AF DI    K HTLVI K H  +   LT E  + +
Sbjct: 29 DEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHI 68

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Length = 138

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 20/97 (20%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEH--------KALVQWLEDLSAITYL 70
           D+DVVAF  I+P  + HTLV+ ++ + N + + S          + + + +       + 
Sbjct: 25  DDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCK----AFR 80

Query: 71  CLMVIFHRYGFHWPPFYSIGHLHLHVIA--PVSEMSF 105
                    G        + HLH+HV     +S+  F
Sbjct: 81  TERSGLIIAGL------EVPHLHVHVFPTRSLSDFGF 111

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Length = 149

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D    A  D  P +  HTLVI K+H  N      +  A +
Sbjct: 19 DEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAEL 58

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Length = 135

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 13/84 (15%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL-----EDLSAITYLCLM 73
           + + A  D  P +K H LVI K H         E  + V        +      Y    
Sbjct: 24 TDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFERY---- 79

Query: 74 VIFHRYGFHWPPFYSIGHLHLHVI 97
                  +      + H+H HVI
Sbjct: 80 ----NILQNNGNHQEVFHVHFHVI 99

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Length = 161

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
          D+DV+AF DI P A  HTLVI K+   N     +E    V
Sbjct: 48 DDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPV 87

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Length = 350

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 22/94 (23%)

Query: 19  DNDVVAFPDIK-----PAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM 73
            +  V  PD+K         +   +  ++ + + + LT EH   +  L ++         
Sbjct: 208 SDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEH---LPLLRNILRE---GQE 261

Query: 74  VIFHRYG---------FHWPPFYSIGHLHLHVIA 98
            I  RY           H+ P Y   HLH+H  A
Sbjct: 262 AILKRYQVTGDRLRVYLHYLPSYY--HLHVHFTA 293

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Length = 301

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 22/94 (23%)

Query: 19  DNDVVAFPDIK-----PAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM 73
            +  V  PD+K         +   +  ++ + + + LT EH   +  L ++         
Sbjct: 161 SDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEH---LPLLRNILHQ---GQE 214

Query: 74  VIFHRYG---------FHWPPFYSIGHLHLHVIA 98
            I  RY           H+ P  S  HLH+H  A
Sbjct: 215 AILQRYRMKGDHLRVYLHYLP--SYYHLHVHFTA 246

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 22/92 (23%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
              V A  ++ P    H +V+  + V   + LT           +L A T   + VI + 
Sbjct: 90  GKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDL------ESAELMAFTQKAIRVIKNV 143

Query: 79  YGFHWPPFYSIG-------------HLHLHVI 97
                P  +++G             HLH+HV+
Sbjct: 144 SR---PHGFNVGLNLGTSAGGSLAEHLHVHVV 172

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 21/94 (22%)

Query: 16  FVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVI 75
           F+      A  + KP    H LV   + V     L  +       + DL   T     V+
Sbjct: 16  FLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPD------EVADLFQTTQRVGTVV 69

Query: 76  FHRYGFHWPPFYSIG------------HLHLHVI 97
              +        +              H+H+HV+
Sbjct: 70  EKHFH---GTSLTFSMQDGPEAGQTVKHVHVHVL 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	100.0
4egu_A	119	Histidine triad (HIT) protein; structural genomics	100.0
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	100.0
3oj7_A	117	Putative histidine triad family protein; hydrolase	100.0
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	100.0
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	100.0
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	100.0
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	100.0
3imi_A	147	HIT family protein; structural genomics, infectiou	100.0
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	100.0
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	100.0
3r6f_A	135	HIT family protein; structural genomics, seattle s	100.0
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	99.98
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	99.97
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	99.97
2oik_A	154	Histidine triad (HIT) protein; HIT-like fold, stru	99.96
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	99.95
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	99.94
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	99.94
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.93
3ohe_A	137	Histidine triad (HIT) protein; structural genomics	99.9
3i24_A	149	HIT family hydrolase; structural genomics, PSI-2,	99.9
3nrd_A	135	Histidine triad (HIT) protein; structural genomics	99.86
3i4s_A	149	Histidine triad protein; hydrolase, phosphatase, H	99.83
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	99.79
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	99.61
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	99.59
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	98.72
2pof_A	227	CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0	97.41
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	95.49

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*

Probab=100.00  E-value=7.7e-37  Score=199.24  Aligned_cols=101  Identities=22%  Similarity=0.209  Sum_probs=95.0

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH--hcCCCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL--CLMVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~--~~~~~~~   77 (119)
                      .|+||+|++ |.++++|||||.++||.|++|.+|||+||+||+|++++.+|+++|+.++++++..++++++  .+++++|
T Consensus         4 ~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~   83 (119)
T 3n1s_A            4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY   83 (119)
T ss_dssp             CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred             CChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence            499999999 9999999999999999999999999999999999999999999999999999999999998  4667899


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~  101 (119)
                      |+++|+|+  ||+|+|+|+|||||+.
T Consensus        84 ni~~n~g~~agq~V~HlH~Hiipr~~  109 (119)
T 3n1s_A           84 RLIMNTNRHGGQEVYHIHMHLLGGRP  109 (119)
T ss_dssp             EEEEEEHHHHTCCSSSCCEEEEESSC
T ss_pred             EEEEeCCCCcCCCcCEEEEEEeCCcc
Confidence            99999985  9999999999998754

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}

Probab=100.00  E-value=5.5e-36  Score=194.91  Aligned_cols=103  Identities=20%  Similarity=0.150  Sum_probs=95.3

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhc--CCCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL--MVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~--~~~~~   77 (119)
                      .|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|+.++++++..++++++.+  ++++|
T Consensus         5 ~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~   84 (119)
T 4egu_A            5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGF   84 (119)
T ss_dssp             TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCE
T ss_pred             CccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            499999999 989999999999999999999999999999999999999999999999999999999998854  36799


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCCCC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVSEM  103 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~~~  103 (119)
                      |+++|+|+  ||+++|+|+|||||++-.
T Consensus        85 ni~~n~g~~agq~v~HlH~Hiip~~~~~  112 (119)
T 4egu_A           85 RVINNCGSDGGQEVKHLHYHILAGKKLP  112 (119)
T ss_dssp             EEEEEETTTTTCCSCSCCEEEEESSCCC
T ss_pred             EEEEeCCCCCCCCcCEEEEEEeCCcccC
Confidence            99999986  899999999999986643

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A

Probab=100.00  E-value=1.5e-35  Score=194.77  Aligned_cols=104  Identities=26%  Similarity=0.259  Sum_probs=95.6

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC-CCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM-VIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~-~~~~~   78 (119)
                      .|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|..++++++..++++++.++ +++||
T Consensus        16 ~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~n   95 (126)
T 3o1c_A           16 DTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYR   95 (126)
T ss_dssp             SSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             CCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence            499999999 9999999999999999999999999999999999999999999999999999999999998665 46999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSEMSF  105 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~  105 (119)
                      +++|+|+  ||+++|+|+|||||++ +++
T Consensus        96 i~~n~g~~agq~v~HlH~Hiipr~~-~~~  123 (126)
T 3o1c_A           96 MVVNEGSDGGQSVYHVHLHVLGGRQ-MNW  123 (126)
T ss_dssp             EECCCHHHHTCCSSSCCEEEEESSC-CCS
T ss_pred             EEEecCCccCCccCEeEEEEeCCcc-cCC
Confidence            9999986  8999999999998754 443

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*

Probab=100.00  E-value=3.4e-35  Score=190.71  Aligned_cols=102  Identities=23%  Similarity=0.262  Sum_probs=93.7

Q ss_pred             Cccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209          2 SFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY   79 (119)
Q Consensus         2 c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~   79 (119)
                      |+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|++++.+|+++|+.++++++..++++++ .+. ++||+
T Consensus         9 CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~g~ni   87 (117)
T 3oj7_A            9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-EGYRV   87 (117)
T ss_dssp             CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             CcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEE
Confidence            99999999 8899999999999999999999999999999999999999999999999999999999888 454 49999


Q ss_pred             EEeCCC--CCccceeEEEEecCCCCCCC
Q psy14209         80 GFHWPP--FYSIGHLHLHVIAPVSEMSF  105 (119)
Q Consensus        80 ~~~~~~--~q~v~HlH~Hiip~~~~~~~  105 (119)
                      ++|+|+  ||+++|+|+|||||++ +++
T Consensus        88 ~~n~g~~agq~v~H~H~Hiipr~~-~~~  114 (117)
T 3oj7_A           88 VNNIGEDAGQTVKHIHFHILGGKK-LAW  114 (117)
T ss_dssp             ECCCSTTTTCCSSSCCEEEEESSC-CCC
T ss_pred             EEcCCCCCCeeeeEEEEEEeCCCC-CCC
Confidence            999986  8999999999998644 443

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}

Probab=100.00  E-value=1.5e-34  Score=194.89  Aligned_cols=106  Identities=21%  Similarity=0.222  Sum_probs=94.8

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-h-cCCCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-C-LMVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~-~~~~~~   77 (119)
                      .|+||+|++ |.+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ . +++++|
T Consensus         6 ~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~   85 (149)
T 3o0m_A            6 SCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGN   85 (149)
T ss_dssp             TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEE
T ss_pred             CCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            499999999 9999999999999999999999999999999999999999999998888877776555555 4 678899


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVSEMSFL  106 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~~~~~~  106 (119)
                      |+++|+++  ||+++|+|+|||||..+.+|+
T Consensus        86 ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~  116 (149)
T 3o0m_A           86 NIAINDGKAAFQTVFHIHLHVVPRRNGDKLS  116 (149)
T ss_dssp             EEECCCSGGGTCCSSSCCEEEEEECTTCCCC
T ss_pred             EEEEecCCCCCCccceEEEEEECCccCCCcc
Confidence            99999986  899999999999987766664

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0

Probab=100.00  E-value=2.1e-34  Score=194.35  Aligned_cols=102  Identities=24%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+|++ |.|+++|||||.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .+++++||
T Consensus        12 ~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~n   91 (149)
T 3ksv_A           12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYN   91 (149)
T ss_dssp             TCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEE
T ss_pred             cCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence            599999999 9999999999999999999999999999999999999999999997777666655444444 56778999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~  102 (119)
                      +++|+|+  ||+++|+|+|||||..+
T Consensus        92 i~~n~g~~aGq~v~HlHiHiiPR~~~  117 (149)
T 3ksv_A           92 VLQNNGSLAHQEVPHVHFHIIPKTDE  117 (149)
T ss_dssp             EEECCSTTTTCCSSSCCEEEEEECCT
T ss_pred             EEEecCcccCCCCCEEEEEEEecccC
Confidence            9999986  89999999999998654

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}

Probab=100.00  E-value=5.9e-34  Score=194.33  Aligned_cols=106  Identities=25%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus        29 ~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~n  108 (161)
T 3lb5_A           29 NNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGIT  108 (161)
T ss_dssp             TSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            499999999 9999999999999999999999999999999999999999999998877777765444444 67889999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSEMSFL  106 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~~  106 (119)
                      +++|+++  ||+++|+|+|||||..+.+++
T Consensus       109 i~~n~g~~aGq~V~HlHiHiiPR~~~d~~~  138 (161)
T 3lb5_A          109 VMQFNEAASQQTVYHLHFHIIPRMEGIELT  138 (161)
T ss_dssp             EEEEESGGGTCCSCSCCEEEEEECTTCCC-
T ss_pred             EEEecCcccCCCCCEEEEEEEcccCCCCCC
Confidence            9999986  899999999999986655443

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1

Probab=100.00  E-value=5.1e-34  Score=192.09  Aligned_cols=101  Identities=25%  Similarity=0.253  Sum_probs=94.4

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC--CCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM--VIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~--~~~~   77 (119)
                      .|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|..++++++++++++++.++  +++|
T Consensus        36 ~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gy  115 (147)
T 1xqu_A           36 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY  115 (147)
T ss_dssp             TCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred             CCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            399999999 8999999999999999999999999999999999999999999999999999999999999665  5699


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~  101 (119)
                      |+++|+|+  ||+++|+|+|||||++
T Consensus       116 ni~~n~g~~aGq~v~HlHlHiiP~~~  141 (147)
T 1xqu_A          116 RLITNCGVAAGQTVFHLHYHLLGGVD  141 (147)
T ss_dssp             EEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred             EEEEecCcccCCCccEEEEEEeCCCc
Confidence            99999986  7999999999998754

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1

Probab=100.00  E-value=8.2e-34  Score=190.88  Aligned_cols=105  Identities=26%  Similarity=0.167  Sum_probs=92.7

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+|++ |.+.++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus        10 ~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   89 (147)
T 3imi_A           10 NCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFN   89 (147)
T ss_dssp             GCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEE
T ss_pred             CCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            399999999 9999999999999999999999999999999999999999999998877777665444444 67889999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCC-CCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVS-EMSF  105 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~-~~~~  105 (119)
                      +++|+|+  ||+++|+|+|||||.. +.+|
T Consensus        90 i~~n~g~~aGq~v~HlHiHiiPR~~~~~~~  119 (147)
T 3imi_A           90 LLNNNGEKAGQTVFHFHLHLIPRYGENDGF  119 (147)
T ss_dssp             EEEEESGGGTCCSSSCCEEEEEECSTTCSE
T ss_pred             EEEeCCcccCCCcCEEEEEEeCCccCCCCc
Confidence            9999986  9999999999999866 4444

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}

Probab=100.00  E-value=2.8e-33  Score=192.89  Aligned_cols=105  Identities=27%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHH-HhcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY-LCLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~   78 (119)
                      .|+||+|++ |.+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.+ +.+++++||
T Consensus        37 ~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~n  116 (173)
T 3l7x_A           37 DCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLN  116 (173)
T ss_dssp             TCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEE
T ss_pred             CCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            499999999 999999999999999999999999999999999999999999999887777766544444 467889999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCC-CCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVS-EMSF  105 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~-~~~~  105 (119)
                      +++|+|+  ||+++|+|+|||||.. +.+|
T Consensus       117 i~~n~g~~aGq~V~HlHiHiIPR~~~d~gf  146 (173)
T 3l7x_A          117 IINNNEETAGQTVFHAHVHLVPRFADSDEF  146 (173)
T ss_dssp             EEECCSGGGTCCSCSCCEEEEEECC-CCSC
T ss_pred             EEEecCcccCCCcCEEEEEEEecccCCCCc
Confidence            9999986  8999999999999866 4444

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}

Probab=100.00  E-value=9e-33  Score=185.98  Aligned_cols=102  Identities=23%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             Cccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209          2 SFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY   79 (119)
Q Consensus         2 c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~   79 (119)
                      |+||+|++ |.+.++|+||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||+
T Consensus         1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni   80 (149)
T 2eo4_A            1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL   80 (149)
T ss_dssp             CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            99999999 9999999999999999999999999999999999999999999998888777765544444 677889999


Q ss_pred             EEeCCC--CCccceeEEEEecCCCCC
Q psy14209         80 GFHWPP--FYSIGHLHLHVIAPVSEM  103 (119)
Q Consensus        80 ~~~~~~--~q~v~HlH~Hiip~~~~~  103 (119)
                      ++|+|+  ||+++|+|+|||||..+.
T Consensus        81 ~~n~g~~~gq~v~HlHiHviPr~~~d  106 (149)
T 2eo4_A           81 LTNIGRSAGQVIFHLHVHIIPTWEGD  106 (149)
T ss_dssp             ECCCSGGGTCCSCSCCEEEEEECSSC
T ss_pred             EEecCcCCCCCcCEEEEEEECCcCCC
Confidence            999986  899999999999986543

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.5e-33  Score=186.15  Aligned_cols=98  Identities=19%  Similarity=0.071  Sum_probs=87.7

Q ss_pred             CCcccccccCCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Q psy14209          1 MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYG   80 (119)
Q Consensus         1 ~c~fc~ii~e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (119)
                      .|+||+|++ .+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++++   .+++..++++.+.++.++||++
T Consensus         7 ~C~fC~i~~-~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~---~~l~~~~~~v~~~~~~~~~ni~   82 (135)
T 3r6f_A            7 GCIFCTLYR-KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL---SGVLDTIRHLVQKFGFERYNIL   82 (135)
T ss_dssp             CCHHHHHHH-HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGG---TTHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCcCccccc-CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHH---HHHHHHHHHHHHHhCCCCeEEE
Confidence            499999999 778999999999999999999999999999999999999999985   4445556677777788899999


Q ss_pred             EeCCCCCccceeEEEEecCCCC
Q psy14209         81 FHWPPFYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        81 ~~~~~~q~v~HlH~Hiip~~~~  102 (119)
                      +|+++||+++|+|+|||||..+
T Consensus        83 ~n~g~gq~v~HlH~HiiPR~~~  104 (135)
T 3r6f_A           83 QNNGNHQEVFHVHFHVIPFVSA  104 (135)
T ss_dssp             CCSSSSCSSSSCCEEEEECCBT
T ss_pred             EEcCCCCCccEEEEEEeccccC
Confidence            9998899999999999998643

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1

Probab=99.98  E-value=1.2e-32  Score=184.37  Aligned_cols=102  Identities=26%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+|++ |.+.++||||+.++||.|.+|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++|+
T Consensus         6 ~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~n   85 (145)
T 1y23_A            6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLN   85 (145)
T ss_dssp             CCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEE
T ss_pred             CCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            499999999 8999999999999999999999999999999999999999999998877777665444444 67888999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~  102 (119)
                      +++|+|+  ||+++|+|+|||||..+
T Consensus        86 i~~n~g~~~g~~v~HlH~HiiPr~~~  111 (145)
T 1y23_A           86 TLNNNGEKAGQSVFHYHMHIIPRYGK  111 (145)
T ss_dssp             EEEEESGGGTCCSSSCCEEEEEECST
T ss_pred             EEEcCCcCCCCCcCEEEEEEEccccC
Confidence            9999986  89999999999998654

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=99.97  E-value=7.5e-32  Score=179.42  Aligned_cols=98  Identities=27%  Similarity=0.292  Sum_probs=84.8

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+|++ |.++++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .++..+++
T Consensus         6 ~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   85 (138)
T 3p0t_A            6 ASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSG   85 (138)
T ss_dssp             HHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             CChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            399999999 9999999999999999999999999999999999999999999998777777665444443 67777666


Q ss_pred             EEEeCCCCCccceeEEEEecCCC
Q psy14209         79 YGFHWPPFYSIGHLHLHVIAPVS  101 (119)
Q Consensus        79 ~~~~~~~~q~v~HlH~Hiip~~~  101 (119)
                      +..   +||+|+|+|+|||||..
T Consensus        86 ~~~---~gq~v~HlH~HiiPr~~  105 (138)
T 3p0t_A           86 LII---AGLEVPHLHVHVFPTRS  105 (138)
T ss_dssp             EEE---CCSSCSSCCEEEEEESC
T ss_pred             EEE---CCcccCEEEEEEecccc
Confidence            542   68999999999999865

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1.4e-30  Score=184.96  Aligned_cols=102  Identities=17%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             CCccccccc-C-CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCce
Q psy14209          1 MSFLSKIIF-K-PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e-~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~   77 (119)
                      .|+||+|++ | .+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++.+|..+++.+.++++ .+++++|
T Consensus        70 ~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~  149 (218)
T 3ano_A           70 AQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGF  149 (218)
T ss_dssp             CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            399999998 5 688999999999999999999999999999999999999999999999999998777777 6778899


Q ss_pred             EEEEeCCC--CCcc-ceeEEEEecCCCC
Q psy14209         78 RYGFHWPP--FYSI-GHLHLHVIAPVSE  102 (119)
Q Consensus        78 ~~~~~~~~--~q~v-~HlH~Hiip~~~~  102 (119)
                      |+++|+|+  ||++ +|+|+|||||...
T Consensus       150 ni~~n~G~~aGq~V~~HlHiHIIPR~~g  177 (218)
T 3ano_A          150 NVGLNLGTSAGGSLAEHLHVHVVPRWGG  177 (218)
T ss_dssp             EEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred             EEEEecCcccCCcccCEEEEEEEcccCC
Confidence            99999986  8999 9999999998554

>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1

Probab=99.96  E-value=1.6e-28  Score=166.00  Aligned_cols=96  Identities=13%  Similarity=-0.045  Sum_probs=83.6

Q ss_pred             CCcccccccCCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209          1 MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY   79 (119)
Q Consensus         1 ~c~fc~ii~e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~   79 (119)
                      .|+||++   .+.++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||+
T Consensus        11 ~C~FC~~---~~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni   87 (154)
T 2oik_A           11 NCELCTT---AGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINL   87 (154)
T ss_dssp             TCHHHHS---CCSEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             CCccCCC---CCCeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEh
Confidence            4999984   467999999999999999999999999999999999999999998888887776555555 677888888


Q ss_pred             EEeCCCCCccceeEEEEecCCCC
Q psy14209         80 GFHWPPFYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        80 ~~~~~~~q~v~HlH~Hiip~~~~  102 (119)
                      +   ..||+++|+|+|||||..+
T Consensus        88 ~---~~gq~v~HlHiHiiPr~~~  107 (154)
T 2oik_A           88 A---SLGNMTPHVHWHVIPRFKR  107 (154)
T ss_dssp             E---ECCSSSCSCEEEEEEECTT
T ss_pred             H---HhCCCCCEEEEEEeCCCCC
Confidence            7   3589999999999998654

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*

Probab=99.95  E-value=7.3e-28  Score=161.61  Aligned_cols=92  Identities=16%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYS   88 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~   88 (119)
                      +.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .+++++||+++|+|+  ||+
T Consensus        12 ~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~   91 (147)
T 1fit_A           12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT   91 (147)
T ss_dssp             GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred             CcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCC
Confidence            47899999999999999999999999999999999999999998777777765544444 677889999999986  899


Q ss_pred             cceeEEEEecCCCCC
Q psy14209         89 IGHLHLHVIAPVSEM  103 (119)
Q Consensus        89 v~HlH~Hiip~~~~~  103 (119)
                      ++|+|+|||||..+.
T Consensus        92 v~HlH~HiiPr~~~d  106 (147)
T 1fit_A           92 VKHVHVHVLPRKAGD  106 (147)
T ss_dssp             SSSCCEEEEEECTTC
T ss_pred             ccEEEEEEECCcCCC
Confidence            999999999976543

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=99.94  E-value=1.6e-26  Score=174.17  Aligned_cols=99  Identities=15%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHH-HHHHHhcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~   78 (119)
                      .|+||+|++ |.   +|+|||.++||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+ +++.+.++.++||
T Consensus       215 ~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn  291 (351)
T 1z84_A          215 KCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYN  291 (351)
T ss_dssp             SCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            499999999 87   999999999999999999999999999999999999999999999988854 5555577778999


Q ss_pred             EEEeCCC--C----CccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--F----YSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~----q~v~HlH~Hiip~~~~  102 (119)
                      +++|.++  |    |+++|+|+||+||.+.
T Consensus       292 ~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~  321 (351)
T 1z84_A          292 YMIHTSPLKVTESQLPYTHWFLQIVPQLSG  321 (351)
T ss_dssp             EEEECCCTTCCGGGGGGCCCEEEEEECCCC
T ss_pred             EEEeCCCccCCCCCCccceEEEEEEccCCC
Confidence            9999986  4    7999999999998654

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=99.94  E-value=1.2e-26  Score=174.60  Aligned_cols=98  Identities=18%  Similarity=0.111  Sum_probs=87.2

Q ss_pred             CCccccccc-CCCc--eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCCC-
Q psy14209          1 MSFLSKIIF-KPNT--WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMVI-   75 (119)
Q Consensus         1 ~c~fc~ii~-e~~~--~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~~-   75 (119)
                      .|+||+|++ |.+.  ++|+||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++. ++++.+.++.+ 
T Consensus       195 ~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~~  274 (348)
T 1gup_A          195 SPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSF  274 (348)
T ss_dssp             SCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            499999998 7654  999999999999999999999999999999999999999999988888764 44444567775 


Q ss_pred             ceEEEEeCCC----CCccceeEEEEec
Q psy14209         76 FHRYGFHWPP----FYSIGHLHLHVIA   98 (119)
Q Consensus        76 ~~~~~~~~~~----~q~v~HlH~Hiip   98 (119)
                      +||+|+|.++    +|+++|+|+||+|
T Consensus       275 ~Yn~g~~~~p~~g~~q~v~HlHiHiiP  301 (348)
T 1gup_A          275 PYSMGWHGAPFNGEENQHWQLHAHFYP  301 (348)
T ss_dssp             CEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred             CeEEEEEeCCCCCCCCcccEEEEEEec
Confidence            9999999875    3899999999999

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.93  E-value=4.6e-26  Score=175.25  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             CCcccccccCCCc-eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIFKPNT-WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~e~~~-~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||+  .|.+. ++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus       298 ~c~fc~--~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n  375 (440)
T 1ems_A          298 GLKFAR--FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTT  375 (440)
T ss_dssp             CCEETT--EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             ceeeec--cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence            499998  55554 799999999999999999999999999999999999999998777777665444444 67788999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~  102 (119)
                      +++|+|+  ||+++|+|+|||||...
T Consensus       376 ~~~~~g~~~gq~v~HlH~Hiipr~~~  401 (440)
T 1ems_A          376 ICVQDGKDAGQTVPHVHIHILPRRAG  401 (440)
T ss_dssp             EECCCSGGGTCCSSSCCEEEEEECSS
T ss_pred             EEEecCCCCCCCccEEEEEEeCCCCC
Confidence            9999986  89999999999997554

>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}

Probab=99.90  E-value=1.2e-23  Score=139.78  Aligned_cols=91  Identities=13%  Similarity=-0.073  Sum_probs=76.9

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCccc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSIG   90 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v~   90 (119)
                      ...+|+|++.+.++++.+|.+|||+||+||+|+.++.+|++++...+...+. +++.+.+.++++++|++   .+||+|+
T Consensus        12 d~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~---~aGq~V~   88 (137)
T 3ohe_A           12 DTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA---ALGNMVP   88 (137)
T ss_dssp             HEEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE---ECCSSCC
T ss_pred             ccEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe---eccCcCC
Confidence            3578999999999999999999999999999999999999999875655554 45555558888888887   4689999


Q ss_pred             eeEEEEecCCCCCCC
Q psy14209         91 HLHLHVIAPVSEMSF  105 (119)
Q Consensus        91 HlH~Hiip~~~~~~~  105 (119)
                      |+|+|||||+.+...
T Consensus        89 HlH~HviPR~~~D~~  103 (137)
T 3ohe_A           89 QLHLHHIVRYQGDPA  103 (137)
T ss_dssp             SCCEEEEEECTTSTT
T ss_pred             EEEEEEeCCCCCCCC
Confidence            999999998665433

>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}

Probab=99.90  E-value=3e-23  Score=139.72  Aligned_cols=89  Identities=11%  Similarity=-0.061  Sum_probs=75.8

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCccc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSIG   90 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v~   90 (119)
                      ...+|+|++.++++++.+|.+|||+||+||+|+.++.+|++++...+...+. +++.+.+.++++++|++.   +||+|+
T Consensus        12 d~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~---aGq~V~   88 (149)
T 3i24_A           12 DCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA---LGNLVP   88 (149)
T ss_dssp             HEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE---CCSSCC
T ss_pred             CCEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh---hhCCCC
Confidence            4578999999999999999999999999999999999999999876655555 455555578888888873   699999


Q ss_pred             eeEEEEecCCCCC
Q psy14209         91 HLHLHVIAPVSEM  103 (119)
Q Consensus        91 HlH~Hiip~~~~~  103 (119)
                      |+|+|||||..+.
T Consensus        89 HlH~HvIPR~~~D  101 (149)
T 3i24_A           89 QLHIHHIARFTTD  101 (149)
T ss_dssp             SCCEEEEEECTTS
T ss_pred             EEEEEEeCCccCC
Confidence            9999999986644

>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}

Probab=99.86  E-value=3.5e-21  Score=127.63  Aligned_cols=91  Identities=13%  Similarity=-0.040  Sum_probs=73.9

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEec-CccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCcc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISK-QHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSI   89 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v   89 (119)
                      ...+|++++.+.++++.+|.+|| +||||| +|+.++.+|++++...+...+. +++.+.+.++++++|++   .+||+|
T Consensus        14 ~~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~---~aGq~V   89 (135)
T 3nrd_A           14 DGIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG---ALGNIV   89 (135)
T ss_dssp             HEEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE---ECCSSC
T ss_pred             CCEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---eccCCC
Confidence            45799999999999999999996 577787 7999999999999865655555 45555557888888887   368999


Q ss_pred             ceeEEEEecCCCCCCCc
Q psy14209         90 GHLHLHVIAPVSEMSFL  106 (119)
Q Consensus        90 ~HlH~Hiip~~~~~~~~  106 (119)
                      +|+|+|||||..+...|
T Consensus        90 ~HlH~HviPR~~~D~~~  106 (135)
T 3nrd_A           90 RQLHVHVIARREGDPNW  106 (135)
T ss_dssp             CSCCEEEEEECTTSTTT
T ss_pred             CEEEEEEecCCCCCCCC
Confidence            99999999987655444

>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}

Probab=99.83  E-value=5.2e-20  Score=123.81  Aligned_cols=90  Identities=10%  Similarity=-0.097  Sum_probs=71.3

Q ss_pred             ceEEEECCcEEEEecCCCCCCeeEEEEecC-ccCCccCCCHhHHHHHHHHHHHHHHHH-HhcCCCceEEEEeCCCCCccc
Q psy14209         13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQ-HVLNAKVLTSEHKALVQWLEDLSAITY-LCLMVIFHRYGFHWPPFYSIG   90 (119)
Q Consensus        13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~-H~~~~~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~v~   90 (119)
                      ..++.|.+.+.++.+..+ +.+|+|||||+ |+.++.+|+++++..+..++..+.+.+ +.++++++|++   .+||+|+
T Consensus        18 ~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~---~aGq~V~   93 (149)
T 3i4s_A           18 TIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA---ALGNLVP   93 (149)
T ss_dssp             EEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE---ECCSSCC
T ss_pred             CEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---ecCCcCC
Confidence            568899999999998554 56699999999 899999999999877766666444444 36778888776   3689999


Q ss_pred             eeEEEEecCCCCCCCc
Q psy14209         91 HLHLHVIAPVSEMSFL  106 (119)
Q Consensus        91 HlH~Hiip~~~~~~~~  106 (119)
                      |+|+|||||..+...|
T Consensus        94 HlH~HvIPR~~~D~~~  109 (149)
T 3i4s_A           94 QLHVHIIARRTGDAAW  109 (149)
T ss_dssp             SCCEEEEEECTTSTTT
T ss_pred             EEEEEEECCcCCCCCC
Confidence            9999999986654443

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=99.79  E-value=2.7e-19  Score=125.31  Aligned_cols=90  Identities=27%  Similarity=0.347  Sum_probs=70.8

Q ss_pred             EEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCH---hHHHHHHHHHHHHH-HHHH-h----------cCC-----
Q psy14209         15 WFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTS---EHKALVQWLEDLSA-ITYL-C----------LMV-----   74 (119)
Q Consensus        15 iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~---~e~~~l~~~~~~~~-~~~~-~----------~~~-----   74 (119)
                      +|||||.++||.|++|.++||+|||||+|+.++.++++   ++..++..|...++ ++++ .          +..     
T Consensus        23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~  102 (204)
T 3sp4_A           23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC  102 (204)
T ss_dssp             EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred             EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence            99999999999999999999999999999999887554   34567888877777 5333 1          111     


Q ss_pred             CceEEEEeCCCCCccceeEEEEecCCCCCCCc
Q psy14209         75 IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFL  106 (119)
Q Consensus        75 ~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~  106 (119)
                      ..+++|+|.+|  |+.|||+|||.+....+-+
T Consensus       103 ~~i~~GfHa~P--Sm~HLHLHVIS~Df~s~~l  132 (204)
T 3sp4_A          103 NYIKVGFHAGP--SMNNLHLHIMTLDHVSPSL  132 (204)
T ss_dssp             TTEEEEEESSC--SSSSCCEEEEESCCCCTTC
T ss_pred             eeEeccCCCCC--cccceeEEEeccCCCChhh
Confidence            26899999876  9999999999864444433

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*

Probab=99.61  E-value=4.6e-15  Score=108.93  Aligned_cols=95  Identities=24%  Similarity=0.261  Sum_probs=83.3

Q ss_pred             cccc--CCCceEEEECCc----EEEEecCC----CCCCeeEEEEecCc-cCCccCCCHhHHHHHHHHHHHHHHHHH---h
Q psy14209          6 KIIF--KPNTWWFVTDND----VVAFPDIK----PAAKHHTLVISKQH-VLNAKVLTSEHKALVQWLEDLSAITYL---C   71 (119)
Q Consensus         6 ~ii~--e~~~~iv~e~~~----~~a~~~~~----p~~~gh~lViPk~H-~~~~~~L~~~e~~~l~~~~~~~~~~~~---~   71 (119)
                      +|+.  +.+++++|||+.    |+++.|.+    |...-|+|+||++| +.|+.+|+.++.++|..|...++++++   +
T Consensus       142 nIl~~~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~  221 (301)
T 3bl9_A          142 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYR  221 (301)
T ss_dssp             HHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhCCCccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcC
Confidence            3554  456899999988    99999987    78999999999988 999999999999999999999999987   3


Q ss_pred             cCCCceEEEEeCCCCCccceeEEEEecCCCC
Q psy14209         72 LMVIFHRYGFHWPPFYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~q~v~HlH~Hiip~~~~  102 (119)
                      ++...+++|+|..|  |+.|+|+||+....+
T Consensus       222 ~~~~~~rlgfHy~P--S~yHLHlHvis~~~~  250 (301)
T 3bl9_A          222 MKGDHLRVYLHYLP--SYYHLHVHFTALGFE  250 (301)
T ss_dssp             CCGGGEEEEEESSC--SSSSCEEEEEETTSC
T ss_pred             CChHHeEEEecCCC--CcceEEEEEEecCCC
Confidence            55788999999999  999999999976543

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*

Probab=99.59  E-value=8.7e-15  Score=108.98  Aligned_cols=95  Identities=24%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             cccc--CCCceEEEECCc----EEEEecCC----CCCCeeEEEEecCc-cCCccCCCHhHHHHHHHHHHHHHHHHH---h
Q psy14209          6 KIIF--KPNTWWFVTDND----VVAFPDIK----PAAKHHTLVISKQH-VLNAKVLTSEHKALVQWLEDLSAITYL---C   71 (119)
Q Consensus         6 ~ii~--e~~~~iv~e~~~----~~a~~~~~----p~~~gh~lViPk~H-~~~~~~L~~~e~~~l~~~~~~~~~~~~---~   71 (119)
                      +|+.  +.+.+++|||+.    |+++.|.+    |...-|+|+||++| +.|+.+|+.+++++|..|...++++++   +
T Consensus       189 nIl~~~~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg  268 (350)
T 1vlr_A          189 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ  268 (350)
T ss_dssp             HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhCCCccccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcC
Confidence            3554  456899999988    99999987    78999999999988 999999999999999999999999987   3


Q ss_pred             cCCCceEEEEeCCCCCccceeEEEEecCCCC
Q psy14209         72 LMVIFHRYGFHWPPFYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~q~v~HlH~Hiip~~~~  102 (119)
                      +....+++|||..|  |+.|||+|||....+
T Consensus       269 ~~~~~lRlgfHy~P--S~yHLHlHvis~~~~  297 (350)
T 1vlr_A          269 VTGDRLRVYLHYLP--SYYHLHVHFTALGFE  297 (350)
T ss_dssp             CCGGGEEEEEESSC--SSSSCEEEEEETTSC
T ss_pred             CChHHeEEEecCCC--CcceEEEEEEeccCC
Confidence            55788999999999  999999999976543

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=98.72  E-value=1.4e-07  Score=70.81  Aligned_cols=95  Identities=9%  Similarity=-0.039  Sum_probs=67.8

Q ss_pred             CCccccccc-CCCceEEE-----ECCcEEEEecCCCCCC------------e-----------eEEEEecCccCCccCCC
Q psy14209          1 MSFLSKIIF-KPNTWWFV-----TDNDVVAFPDIKPAAK------------H-----------HTLVISKQHVLNAKVLT   51 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~-----e~~~~~a~~~~~p~~~------------g-----------h~lViPk~H~~~~~~L~   51 (119)
                      .|+||.--. ..+..+..     .+-.+++|.+.+|..+            |           +++|.+.+|..++.+|+
T Consensus        62 ~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls  141 (351)
T 1z84_A           62 SCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDID  141 (351)
T ss_dssp             CCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSC
T ss_pred             CCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHHCC
Confidence            399998544 44544433     3566899999999883            4           88999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhc----CCCceEEEEeCCC--CCccceeEEEEec
Q psy14209         52 SEHKALVQWLEDLSAITYLCL----MVIFHRYGFHWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        52 ~~e~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~q~v~HlH~Hiip   98 (119)
                      .+++..+..+   .++-.+.+    +...+.+..|.|+  |.|.+|.|.||+.
T Consensus       142 ~~e~~~vi~~---~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a  191 (351)
T 1z84_A          142 PVGIGDILIA---YKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA  191 (351)
T ss_dssp             HHHHHHHHHH---HHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred             HHHHHHHHHH---HHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence            9995544443   33333322    2345667778775  8999999999985

>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4

Probab=97.41  E-value=0.00057  Score=48.27  Aligned_cols=83  Identities=8%  Similarity=-0.032  Sum_probs=55.6

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHH-----HHHHHhcCCCceEEEEeC
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLS-----AITYLCLMVIFHRYGFHW   83 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~   83 (119)
                      |-.-|-....++++.|  +..|.|.|++|...++.+++   +++.....+. ....+     +++-+.+......+.+|.
T Consensus        30 PC~~Vd~~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~-~AW~aR~~v~~~~g~pipd~~lsLaINS  106 (227)
T 2pof_A           30 PCAEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW-LAWQARDFMSKKYGQPVPDRAVSLAINS  106 (227)
T ss_dssp             TSSEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHH-HHHHTTHHHHHHHTSCCCGGGEEEEEBC
T ss_pred             CCceEccCCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHH-HHHHHhHHHHHhhCCCCCccceEEEecC
Confidence            3445667788888888  45788999999999877764   3322211122 22222     222235556678899998


Q ss_pred             CCCCccceeEEEEe
Q psy14209         84 PPFYSIGHLHLHVI   97 (119)
Q Consensus        84 ~~~q~v~HlH~Hii   97 (119)
                      ..|.|..|||+||=
T Consensus       107 ~~gRSQnQLHIHIs  120 (227)
T 2pof_A          107 RTGRTQNHFHIHIS  120 (227)
T ss_dssp             GGGCSCCSCCEEEE
T ss_pred             CCCccccceeeehh
Confidence            87889999999994

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=95.49  E-value=0.062  Score=39.96  Aligned_cols=61  Identities=13%  Similarity=-0.106  Sum_probs=39.8

Q ss_pred             eEEEEecCccCCccCCCHhHHHHHHHHH-HHHHHHHHhcCCCceEEEE-eCCC--CCccceeEEEEec
Q psy14209         35 HTLVISKQHVLNAKVLTSEHKALVQWLE-DLSAITYLCLMVIFHRYGF-HWPP--FYSIGHLHLHVIA   98 (119)
Q Consensus        35 h~lViPk~H~~~~~~L~~~e~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~--~q~v~HlH~Hiip   98 (119)
                      .++|...+|-.++.+|+.++...+..+. ...+++.   ..-.|...| |.|+  |.|.+|-|..|+.
T Consensus       107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~---~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a  171 (348)
T 1gup_A          107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELG---KTYPWVQVFENKGAAMGCSNPHPGGQIWA  171 (348)
T ss_dssp             EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHH---HHCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred             EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHh---hcCCEEEEecccCCcCCcCCCCCceeEEe
Confidence            5556667899999999999865443332 2233332   122455555 4454  8999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1guqa2	171	d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly	8e-08
d1vlra1	192	d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-	8e-08
d1emsa1	160	d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te	1e-06
d1kpfa_	111	d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1	9e-06
d1xqua_	113	d.13.1.1 (A:) Putative hydrolase {Clostridium ther	4e-05
d2oika1	139	d.13.1.1 (A:6-144) Histidine triad protein Mfla250	3e-04
d1fita_	146	d.13.1.1 (A:) FHIT (fragile histidine triad protei	6e-04
d1y23a_	139	d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]	0.001

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 8e-08
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 10  KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
              +   V     +A      A    TL++ K HVL    LT   ++ +          Y
Sbjct: 30  ADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRY 89

Query: 70  --LCLMVIFHRYGFHWPPF----YSIGHLHLHVIAPV 100
             L      +  G+H  PF         LH H   P+
Sbjct: 90  DNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 126

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 8e-08
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 19  DNDVVAFPDIK----PAAKHHTLVISKQHVL-NAKVLTSEHKALVQWLEDLSAITYLCLM 73
            +  V  PD+K         + + I  +  + + + LT EH  L++ +        +   
Sbjct: 51  SDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILRE-GQEAILKR 109

Query: 74  VIFH----RYGFHWPPFYSIGHLHLHVIAP 99
                   R   H+ P Y   HLH+H  A 
Sbjct: 110 YQVTGDRLRVYLHYLPSYY--HLHVHFTAL 137

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 11  PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA-----LVQWLEDLS 65
           P    F +      F ++KP    H LV  K+ V     LT    A       +    L 
Sbjct: 27  PADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLE 86

Query: 66  AITYLCLMVIFHRYGFHWPPFYSIGHLHLHVI 97
               +    I  + G       ++ H+H+H++
Sbjct: 87  KHHNVTSTTICVQDGKDA--GQTVPHVHIHIL 116

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 9e-06
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
           D+  +AF DI P A  H LVI K+H+    V   + ++L   L  L  +   C   +   
Sbjct: 20  DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHLMIVGKKCAADLGLN 76

Query: 79  YGF------HWPPFYSIGHLHLHVIA 98
            G+            S+ H+HLHV+ 
Sbjct: 77  KGYRMVVNEGSDGGQSVYHVHLHVLG 102

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 37.9 bits (87), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV---- 74
           D  V+A  DI PAA  H L+I K+H+ N K +   +  ++  +   +      L +    
Sbjct: 22  DERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKG 81

Query: 75  IFHRYGFHWPPFYSIGHLHLHVIAP 99
                        ++ HLH H++  
Sbjct: 82  YRLITNCGVAAGQTVFHLHYHLLGG 106

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 2/80 (2%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
          D                  VI  +HV     L    +  +  +          +M     
Sbjct: 20 DALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKI 79

Query: 79 YGFHWPPFYSIGHLHLHVIA 98
                      H+H HVI 
Sbjct: 80 NLASL--GNMTPHVHWHVIP 97

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 6e-04
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY---LCLMVI 75
               A  + KP    H LV   + V     L  +  A +                   +
Sbjct: 18 TELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSL 77

Query: 76 FHRYGFHWPPFYSIGHLHLHVI 97
                      ++ H+H+HV+
Sbjct: 78 TFSMQDGPEAGQTVKHVHVHVL 99

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 19  DNDVVAFPDIKPAAKHHTLVISKQHVLN-AKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
           D  V+AF DI    K HTLVI K H+ N  +      K     +  ++         I  
Sbjct: 21  DEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL 80

Query: 78  RYGFH--WPPFYSIGHLHLHVI 97
               +       S+ H H+H+I
Sbjct: 81  NTLNNNGEKAGQSVFHYHMHII 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1kpfa_	111	Protein kinase C inhibitor-1, PKCI-1 {Human (Homo	100.0
d1xqua_	113	Putative hydrolase {Clostridium thermocellum [TaxI	100.0
d1y23a_	139	Hit {Bacillus subtilis [TaxId: 1423]}	100.0
d1emsa1	160	NIT-FHIT fusion protein, C-terminal domain {Nemato	99.97
d1fita_	146	FHIT (fragile histidine triad protein) {Human (Hom	99.96
d2oika1	139	Histidine triad protein Mfla2506 {Methylobacillus	99.96
d1guqa2	171	Galactose-1-phosphate uridylyltransferase {Escheri	99.95
d1z84a2	156	Galactose-1-phosphate uridylyltransferase {Thale c	99.95
d1vlra1	192	mRNA decapping enzyme DcpS C-terminal domain {Mous	99.75
d2pofa1	220	CDP-diacylglycerol pyrophosphatase CDH {Escherichi	97.79
d1z84a1	173	Galactose-1-phosphate uridylyltransferase {Thale c	97.58
d1guqa1	176	Galactose-1-phosphate uridylyltransferase {Escheri	96.81

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=191.75  Aligned_cols=104  Identities=27%  Similarity=0.294  Sum_probs=95.1

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhc-CCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL-MVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~-~~~~~~   78 (119)
                      .|+||+|++ |.|..+|||||.++||.|.+|.++||+||+||+|+.++.+|++++..++..++..++++++.. ..++|+
T Consensus         1 dCiFc~I~~~e~p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (111)
T d1kpfa_           1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYR   80 (111)
T ss_dssp             CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             CCcccccccCCCCccEEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence            599999999 999999999999999999999999999999999999999999999999999999998888854 467999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSEMSF  105 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~  105 (119)
                      +++|+|+  ||+|+|+|+|||||+ ++++
T Consensus        81 i~~n~g~~agq~V~HlH~Hiip~~-~l~w  108 (111)
T d1kpfa_          81 MVVNEGSDGGQSVYHVHLHVLGGR-QMHW  108 (111)
T ss_dssp             EECCCHHHHTCCSSSCCEEEEESS-CCCS
T ss_pred             EEEeCCccCCcccceeEEEEeCCC-cCCC
Confidence            9999974  999999999999865 3543

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.8e-35  Score=189.56  Aligned_cols=101  Identities=24%  Similarity=0.258  Sum_probs=93.7

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHh--cCCCce
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLC--LMVIFH   77 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~--~~~~~~   77 (119)
                      .|+||+|++ |.++++|||||.++||.|.+|.++||+||+||+|+.++.+|++++.+++..++..+.++++.  +..++|
T Consensus         3 ~CiFC~I~~~e~p~~ivyede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   82 (113)
T d1xqua_           3 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY   82 (113)
T ss_dssp             TCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred             CCcCCcccCCCCcccEEEeCCCEEEEECCCCCCCceEEEeecccccchhhccchhHHHHHHHHHHHHHHHHhhccCCCce
Confidence            599999999 99999999999999999999999999999999999999999999988999999988888874  557899


Q ss_pred             EEEEeCCC--CCccceeEEEEecCCC
Q psy14209         78 RYGFHWPP--FYSIGHLHLHVIAPVS  101 (119)
Q Consensus        78 ~~~~~~~~--~q~v~HlH~Hiip~~~  101 (119)
                      ++++|+|+  ||+++|+|+|||||++
T Consensus        83 ~~~~~~g~~agq~v~HlH~Hvip~~~  108 (113)
T d1xqua_          83 RLITNCGVAAGQTVFHLHYHLLGGVD  108 (113)
T ss_dssp             EEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred             EEEEeCccccccccCeeEEEEeCccc
Confidence            99999975  9999999999998765

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.4e-35  Score=194.83  Aligned_cols=105  Identities=27%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      +|+||+|++ |.|+++|||||.++||.|.+|.++||+||+||+|+.++.+|+++++..+..++..+.+.++ .+++++||
T Consensus         2 ~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~~   81 (139)
T d1y23a_           2 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLN   81 (139)
T ss_dssp             CCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEE
T ss_pred             cCccCccccCCCCccEEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcccCCcE
Confidence            699999999 9999999999999999999999999999999999999999999998888887776555555 88889999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCC-CCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVS-EMSF  105 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~-~~~~  105 (119)
                      +++|+|+  ||+|+|+|+|||||.. +.+|
T Consensus        82 i~~n~g~~agq~v~H~H~HviPR~~~~~~~  111 (139)
T d1y23a_          82 TLNNNGEKAGQSVFHYHMHIIPRYGKGDGF  111 (139)
T ss_dssp             EEEEESGGGTCCSSSCCEEEEEECSTTCSE
T ss_pred             EEeCCCccccEecCEEEEEEEccccCCCCc
Confidence            9999985  9999999999999854 4433

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.9e-32  Score=184.12  Aligned_cols=101  Identities=17%  Similarity=0.087  Sum_probs=91.1

Q ss_pred             Cccccccc-CCCce-EEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          2 SFLSKIIF-KPNTW-WFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         2 c~fc~ii~-e~~~~-iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      |.||+|.+ |.|+. |||||+.++||.|++|.+|||+|||||+|+.++.+|+++++..+..+++.+.++++ .++.++|+
T Consensus        16 ~~~~~~~~~eiP~~~ii~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~n   95 (160)
T d1emsa1          16 TGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTT   95 (160)
T ss_dssp             SSCCEETTEECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             cCCceEcCCcCCcceEEEeCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEE
Confidence            78999999 99974 99999999999999999999999999999999999999998888888776555555 77889999


Q ss_pred             EEEeCCC--CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP--FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~--~q~v~HlH~Hiip~~~~  102 (119)
                      +++|+|+  ||+|+|+|+|||||+.+
T Consensus        96 i~~n~G~~aGq~V~HlHiHIIPR~~~  121 (160)
T d1emsa1          96 ICVQDGKDAGQTVPHVHIHILPRRAG  121 (160)
T ss_dssp             EECCCSGGGTCCSSSCCEEEEEECSS
T ss_pred             EecccCCCCCeEEeEEEEEEECCcCC
Confidence            9999986  99999999999998653

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.7e-29  Score=165.53  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCc
Q psy14209         12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYS   88 (119)
Q Consensus        12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~   88 (119)
                      |+.||||||.++||.|.+|.+|||+||+||+|++++.+|+++|..+|..++..+.++++ .+++++|++++|+|+  ||+
T Consensus        11 p~~ii~e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~   90 (146)
T d1fita_          11 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT   90 (146)
T ss_dssp             GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred             cceEEEECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCCC
Confidence            78899999999999999999999999999999999999999999999998887666665 788899999999985  899


Q ss_pred             cceeEEEEecCCCC
Q psy14209         89 IGHLHLHVIAPVSE  102 (119)
Q Consensus        89 v~HlH~Hiip~~~~  102 (119)
                      ++|+|+|||||..+
T Consensus        91 v~HlH~HiiPR~~g  104 (146)
T d1fita_          91 VKHVHVHVLPRKAG  104 (146)
T ss_dssp             SSSCCEEEEEECTT
T ss_pred             CCEEEEEEecCcCC
Confidence            99999999997553

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

Probab=99.96  E-value=8.4e-29  Score=163.36  Aligned_cols=98  Identities=12%  Similarity=-0.089  Sum_probs=84.5

Q ss_pred             CCcccccccCCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209          1 MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY   79 (119)
Q Consensus         1 ~c~fc~ii~e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~   79 (119)
                      .|+||++.+   +++||||+.++|+++.+|.+|||+||+||+|+.++.+|+++++..+..++..+.++++ .++...+++
T Consensus         5 ~C~fC~~~~---~~ii~e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~~~n~   81 (139)
T d2oika1           5 NCELCTTAG---GEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINL   81 (139)
T ss_dssp             TCHHHHSCC---SEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             cCccccCcC---CeEEEECCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHHHHHHHhHHHHhhcchhhhHH
Confidence            599998754   4689999999999999999999999999999999999999999999888887666665 677777766


Q ss_pred             EEeCCCCCccceeEEEEecCCCCCC
Q psy14209         80 GFHWPPFYSIGHLHLHVIAPVSEMS  104 (119)
Q Consensus        80 ~~~~~~~q~v~HlH~Hiip~~~~~~  104 (119)
                      +.   .||+++|+|+|||||..+..
T Consensus        82 ~~---~g~~v~HlH~HviPR~~~d~  103 (139)
T d2oika1          82 AS---LGNMTPHVHWHVIPRFKRDR  103 (139)
T ss_dssp             EE---CCSSSCSCEEEEEEECTTSS
T ss_pred             HH---hcCCCCeEEEEEecccCCCC
Confidence            54   47999999999999866543

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-28  Score=166.86  Aligned_cols=99  Identities=20%  Similarity=0.179  Sum_probs=87.9

Q ss_pred             CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCC-C
Q psy14209          1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMV-I   75 (119)
Q Consensus         1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~-~   75 (119)
                      .|+||+|++ |.  +++||||||+++||+|++|.+|||+||+||+|+.++.+|+++++.+|+.+++.+.+.++ .++. .
T Consensus        18 ~clfcdii~~E~~~~~RiV~e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~~~~   97 (171)
T d1guqa2          18 SPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSF   97 (171)
T ss_dssp             SCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCcHHHHHHhhccCCCeEEEECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            499999998 64  57899999999999999999999999999999999999999999999999887766666 4454 4


Q ss_pred             ceEEEEeCCC----CCccceeEEEEecC
Q psy14209         76 FHRYGFHWPP----FYSIGHLHLHVIAP   99 (119)
Q Consensus        76 ~~~~~~~~~~----~q~v~HlH~Hiip~   99 (119)
                      +|++++|.+|    ++.++|+|+|++||
T Consensus        98 ~y~~~~~~~p~~~~~~~~~H~Hihi~Pr  125 (171)
T d1guqa2          98 PYSMGWHGAPFNGEENQHWQLHAHFYPP  125 (171)
T ss_dssp             CEEEEEECCCSSSSCCTTCCCEEEEECC
T ss_pred             chhhhhhcCccccCCCceeEEEEEEccC
Confidence            7999999876    36788999999997

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=6.5e-28  Score=161.84  Aligned_cols=99  Identities=15%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209          1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR   78 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~   78 (119)
                      .|+||++++ |   +||+|||+|+||+|++|.+|||+||+||+|+.++.+|+++++.+|+.+++.+.+.++ .++..+|+
T Consensus        20 ~Cifc~i~~~~---riV~e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   96 (156)
T d1z84a2          20 KCCLCEAKSKH---FVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYN   96 (156)
T ss_dssp             SCTTTTHHHHS---EEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCceEEecCCC---EEEEECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            399999988 5   799999999999999999999999999999999999999999999998886655555 77888999


Q ss_pred             EEEeCCC------CCccceeEEEEecCCCC
Q psy14209         79 YGFHWPP------FYSIGHLHLHVIAPVSE  102 (119)
Q Consensus        79 ~~~~~~~------~q~v~HlH~Hiip~~~~  102 (119)
                      +++|++|      ++.++|+|+|++||.+.
T Consensus        97 ~~~~~~p~~~~~~~~~~~H~hi~~~Pr~~~  126 (156)
T d1z84a2          97 YMIHTSPLKVTESQLPYTHWFLQIVPQLSG  126 (156)
T ss_dssp             EEEECCCTTCCGGGGGGCCCEEEEEECCCC
T ss_pred             HhhhcCCCCCcccCceeEEEEEEecCCCCc
Confidence            9999875      25778999999998654

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.9e-18  Score=117.24  Aligned_cols=88  Identities=24%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             CCCceEEEECCc----EEEEecCC----CCCCeeEEEEecCc-cCCccCCCHhHHHHHHHHHHHHHHHHH---hcCCCce
Q psy14209         10 KPNTWWFVTDND----VVAFPDIK----PAAKHHTLVISKQH-VLNAKVLTSEHKALVQWLEDLSAITYL---CLMVIFH   77 (119)
Q Consensus        10 e~~~~iv~e~~~----~~a~~~~~----p~~~gh~lViPk~H-~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~~~~   77 (119)
                      +.+++|+|+|+.    |+++.|.+    |....|+|+||++| +.|+.+|++++.++|..|+..+++++.   ++..++|
T Consensus        38 ~E~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~~~~gi~~~~~  117 (192)
T d1vlra1          38 AEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRL  117 (192)
T ss_dssp             ---CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred             CccceeEEeCCCCCCCEEEecccccCCCcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHhCCChhhe
Confidence            457899999944    99999987    99999999999888 999999999999999999999988765   4567899


Q ss_pred             EEEEeCCCCCccceeEEEEecC
Q psy14209         78 RYGFHWPPFYSIGHLHLHVIAP   99 (119)
Q Consensus        78 ~~~~~~~~~q~v~HlH~Hiip~   99 (119)
                      ++|+|.+|  |+.|+|+||+..
T Consensus       118 Rig~H~~P--Sv~HLHlHvi~~  137 (192)
T d1vlra1         118 RVYLHYLP--SYYHLHVHFTAL  137 (192)
T ss_dssp             EEEEESSC--SSSSCEEEEEET
T ss_pred             EEEEECCC--CEeeeEEEEEec
Confidence            99999987  999999999964

>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: CDH-like
domain: CDP-diacylglycerol pyrophosphatase CDH
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=3.4e-05  Score=52.56  Aligned_cols=81  Identities=9%  Similarity=-0.020  Sum_probs=53.4

Q ss_pred             eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHH-----HhcCCCceEEEEeCCC
Q psy14209         14 WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITY-----LCLMVIFHRYGFHWPP   85 (119)
Q Consensus        14 ~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   85 (119)
                      -.|-++..++++.|  +..|.|.|++|...++.+++   +++.....+. ....++..+     +.+..+...+.+|...
T Consensus        26 ~~Vd~~~gyvvlKD--~~G~~qyLliPt~rIsGIEsP~Ll~~~~pnyf~-~AW~aR~~v~~~~g~~lpd~~lsLaINS~~  102 (220)
T d2pofa1          26 AEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW-LAWQARDFMSKKYGQPVPDRAVSLAINSRT  102 (220)
T ss_dssp             SEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHH-HHHHTTHHHHHHHTSCCCGGGEEEEEBCGG
T ss_pred             eeEecCCCEEEEeC--CCCCceEEEeecccccCccChhhcCCCCccHHH-HHHHHhHHHHHHhCCCCCchheEEEecCCC
Confidence            34555666777765  55677899999999988876   4433222222 222233322     2455567889999888


Q ss_pred             CCccceeEEEEe
Q psy14209         86 FYSIGHLHLHVI   97 (119)
Q Consensus        86 ~q~v~HlH~Hii   97 (119)
                      |.|..|||+||=
T Consensus       103 gRSQdQLHIHI~  114 (220)
T d2pofa1         103 GRTQNHFHIHIS  114 (220)
T ss_dssp             GCSCCSCCEEEE
T ss_pred             CcCccceeeehh
Confidence            889999999993

>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.58  E-value=0.00082  Score=43.98  Aligned_cols=95  Identities=13%  Similarity=-0.014  Sum_probs=57.9

Q ss_pred             CCccccccc-CCCceEEE--ECC---cEEEEecCCCCC----------------------Cee-EEEEecCccCCccCCC
Q psy14209          1 MSFLSKIIF-KPNTWWFV--TDN---DVVAFPDIKPAA----------------------KHH-TLVISKQHVLNAKVLT   51 (119)
Q Consensus         1 ~c~fc~ii~-e~~~~iv~--e~~---~~~a~~~~~p~~----------------------~gh-~lViPk~H~~~~~~L~   51 (119)
                      .|+||.=-. +.+..+..  +++   .+.+|.+.+|..                      ..| ++|...+|-.++.+++
T Consensus        40 ~CPfCpGne~~~~~~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~~~  119 (173)
T d1z84a1          40 SCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDID  119 (173)
T ss_dssp             CCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSC
T ss_pred             cCCCCCCCcccCCCcceeccccCCCceEEEeCCCCcccccccccccccCcCcceeecccccceeeEEeCccccCChhhCC
Confidence            499996433 33433322  111   357777777742                      122 5555788999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhcCC---CceEEEEeC-CC--CCccceeEEEEec
Q psy14209         52 SEHKALVQWLEDLSAITYLCLMV---IFHRYGFHW-PP--FYSIGHLHLHVIA   98 (119)
Q Consensus        52 ~~e~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~-~~--~q~v~HlH~Hiip   98 (119)
                      .+++..   ++.+.++-++.+..   -.|...|-| |+  |.|++|.|..|+.
T Consensus       120 ~e~i~~---v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a  169 (173)
T d1z84a1         120 PVGIGD---ILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA  169 (173)
T ss_dssp             HHHHHH---HHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred             HHHHHH---HHHHHHHHHHHHHcCCCceEEEEEeecCccCccCCCCCCeeeee
Confidence            998544   33333333333322   246666644 54  8999999999984

>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0042  Score=40.54  Aligned_cols=60  Identities=13%  Similarity=-0.132  Sum_probs=41.0

Q ss_pred             EEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeC-CC--CCccceeEEEEec
Q psy14209         36 TLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHW-PP--FYSIGHLHLHVIA   98 (119)
Q Consensus        36 ~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~--~q~v~HlH~Hiip   98 (119)
                      ++|...+|-.++.+|+.+++..+..+.+ ..+++.+.   ..|...|-| |+  |.|..|-|..|+.
T Consensus       107 VIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~~l~~~---i~yv~iFkN~G~~aGaSl~HPH~QI~a  170 (176)
T d1guqa1         107 VICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKT---YPWVQVFENKGAAMGCSNPHPGGQIWA  170 (176)
T ss_dssp             EEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHH---CSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred             EEEECcccccChhhCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeecCccccCCCCCCCeeeee
Confidence            5555889999999999999765544322 23333222   356666644 53  8999999999984