Psyllid ID: psy1421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Secondary Structure (PSIPRED)
ccccccEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEEcccEEEEEEccccEEEEEEccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFdkkynptwhcivgrnfgsyvtheTRHFIYFYLGQVAILLFKSG
Flexible Loop (DISEMBL)
msdrkaviknadmseemqqDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Low Complexity Region (SEG)
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Disordered region (IsUnstruct)
*********************VDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLF***
Disordered Region (DISOPRED)
**DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Disordered Region (DISEMBL)
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Disordered Region (DISPRO)
***RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q24117	89	Dynein light chain 1, cyt	yes	N/A	1.0	1.0	1.0	4e-48
O96860	89	Dynein light chain 2, cyt	yes	N/A	1.0	1.0	0.988	1e-47
Q78P75	89	Dynein light chain 2, cyt	yes	N/A	1.0	1.0	0.966	6e-47
Q9D0M5	89	Dynein light chain 2, cyt	yes	N/A	1.0	1.0	0.966	6e-47
Q96FJ2	89	Dynein light chain 2, cyt	yes	N/A	1.0	1.0	0.966	6e-47
Q3MHR3	89	Dynein light chain 2, cyt	yes	N/A	1.0	1.0	0.966	6e-47
Q22799	89	Dynein light chain 1, cyt	yes	N/A	1.0	1.0	0.943	7e-46
P63170	89	Dynein light chain 1, cyt	no	N/A	1.0	1.0	0.943	1e-45
P63169	89	Dynein light chain 1, cyt	yes	N/A	1.0	1.0	0.943	1e-45
P63168	89	Dynein light chain 1, cyt	no	N/A	1.0	1.0	0.943	1e-45

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.
Drosophila melanogaster (taxid: 7227)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M DRKAVIKNADMS++MQQDA+DCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M DRKAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M DRKAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M DRKAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
195447132	268	GK25335 [Drosophila willistoni] gi|19416	0.988	0.328	1.0	6e-49
119614889	226	dynein, light chain, LC8-type 2, isoform	1.0	0.393	0.966	1e-46
17933574	89	cut up, isoform A [Drosophila melanogast	1.0	1.0	1.0	2e-46
149243127	91	Chain A, Structural Analysis Of A Cytopl	1.0	0.978	1.0	2e-46
194759234	89	GF15181 [Drosophila ananassae] gi|190615	1.0	1.0	0.988	2e-46
195114682	89	GI14559 [Drosophila mojavensis] gi|19391	1.0	1.0	0.988	4e-46
157129438	128	cytoplasmic dynein light chain [Aedes ae	1.0	0.695	0.977	4e-46
321460801	89	hypothetical protein DAPPUDRAFT_308639 [	1.0	1.0	0.988	4e-46
17137630	89	cytoplasmic dynein light chain 2, isofor	1.0	1.0	0.988	5e-46
195386038	89	GJ17025 [Drosophila virilis] gi|19414816	1.0	1.0	0.977	5e-46

>gi|195447132|ref|XP_002071078.1| GK25335 [Drosophila willistoni] gi|194167163|gb|EDW82064.1| GK25335 [Drosophila willistoni]

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKS 88
          NFGSYVTHETRHFIYFYLGQVAILLFKS
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKS 88

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119614889|gb|EAW94483.1| dynein, light chain, LC8-type 2, isoform CRA_a [Homo sapiens]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
           MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 138 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 197

Query: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
           NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 198 NFGSYVTHETKHFIYFYLGQVAILLFKSG 226

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|17933574|ref|NP_525075.1| cut up, isoform A [Drosophila melanogaster] gi|24639734|ref|NP_726942.1| cut up, isoform B [Drosophila melanogaster] gi|24639736|ref|NP_726943.1| cut up, isoform C [Drosophila melanogaster] gi|24639738|ref|NP_726944.1| cut up, isoform D [Drosophila melanogaster] gi|299782477|ref|NP_001177683.1| dynein light chain A [Nasonia vitripennis] gi|386763834|ref|NP_001245530.1| cut up, isoform E [Drosophila melanogaster] gi|193687024|ref|XP_001947701.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Acyrthosiphon pisum] gi|194888380|ref|XP_001976907.1| GG18720 [Drosophila erecta] gi|195034398|ref|XP_001988887.1| GH11410 [Drosophila grimshawi] gi|195114680|ref|XP_002001895.1| GI14563 [Drosophila mojavensis] gi|195340767|ref|XP_002036984.1| GM12359 [Drosophila sechellia] gi|195386040|ref|XP_002051712.1| GJ17036 [Drosophila virilis] gi|195433849|ref|XP_002064919.1| GK15188 [Drosophila willistoni] gi|195477050|ref|XP_002100074.1| ctp [Drosophila yakuba] gi|198469256|ref|XP_002134258.1| GA25980 [Drosophila pseudoobscura pseudoobscura] gi|328725966|ref|XP_003248689.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Acyrthosiphon pisum] gi|2494223|sp|Q24117.1|DYL1_DROME RecName: Full=Dynein light chain 1, cytoplasmic; AltName: Full=8 kDa dynein light chain; AltName: Full=Cut up protein gi|159162939|pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila gi|165760946|pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To Residues 123-138 Of Intermediate Chain Ic74 gi|196049978|pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex With A Peptide Derived From Swallow gi|215794595|pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8 gi|258588291|pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light Chains With Dynein Intermediate Chain gi|258588292|pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light Chains With Dynein Intermediate Chain gi|258588319|pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light Chains With Dynein Intermediate Chain gi|1209059|gb|AAB04148.1| cytoplasmic dynein light chain 1 [Drosophila melanogaster] gi|4097197|gb|AAD00072.1| 8kd dynein light chain [Drosophila melanogaster] gi|4097201|gb|AAD00074.1| 8kd dynein light chain [Drosophila melanogaster] gi|7290522|gb|AAF45975.1| cut up, isoform A [Drosophila melanogaster] gi|22831697|gb|AAN09126.1| cut up, isoform B [Drosophila melanogaster] gi|22831698|gb|AAN09127.1| cut up, isoform C [Drosophila melanogaster] gi|22831699|gb|AAN09128.1| cut up, isoform D [Drosophila melanogaster] gi|38048413|gb|AAR10109.1| similar to Drosophila melanogaster ctp, partial [Drosophila yakuba] gi|121543715|gb|ABM55544.1| dynein light chain 1, cytoplasmic-like protein [Maconellicoccus hirsutus] gi|190648556|gb|EDV45834.1| GG18720 [Drosophila erecta] gi|193904887|gb|EDW03754.1| GH11410 [Drosophila grimshawi] gi|193912470|gb|EDW11337.1| GI14563 [Drosophila mojavensis] gi|194131100|gb|EDW53143.1| GM12359 [Drosophila sechellia] gi|194148169|gb|EDW63867.1| GJ17036 [Drosophila virilis] gi|194161004|gb|EDW75905.1| GK15188 [Drosophila willistoni] gi|194187598|gb|EDX01182.1| ctp [Drosophila yakuba] gi|198146786|gb|EDY72885.1| GA25980 [Drosophila pseudoobscura pseudoobscura] gi|220951882|gb|ACL88484.1| ctp-PA [synthetic construct] gi|307203868|gb|EFN82799.1| Dynein light chain 1, cytoplasmic [Harpegnathos saltator] gi|383293219|gb|AFH07244.1| cut up, isoform E [Drosophila melanogaster]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149243127|pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex gi|149243128|pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex gi|149243129|pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex gi|149243130|pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex gi|237640495|pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction gi|237640496|pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction gi|237640497|pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction gi|237640498|pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction gi|237640499|pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction gi|237640500|pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1- Lc8 Interaction

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759234|ref|XP_001961854.1| GF15181 [Drosophila ananassae] gi|190615551|gb|EDV31075.1| GF15181 [Drosophila ananassae]

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAY+KKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114682|ref|XP_002001896.1| GI14559 [Drosophila mojavensis] gi|193912471|gb|EDW11338.1| GI14559 [Drosophila mojavensis]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQD+VDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDSVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129438|ref|XP_001655386.1| cytoplasmic dynein light chain [Aedes aegypti] gi|157129440|ref|XP_001655387.1| cytoplasmic dynein light chain [Aedes aegypti] gi|108872207|gb|EAT36432.1| AAEL011478-PA [Aedes aegypti] gi|108872208|gb|EAT36433.1| AAEL011478-PB [Aedes aegypti]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/89 (97%), Positives = 88/89 (98%)

Query: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
           MSDRKAVIKNADM EEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK+YNPTWHCIVGR
Sbjct: 40  MSDRKAVIKNADMGEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKRYNPTWHCIVGR 99

Query: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 100 NFGSYVTHETRHFIYFYLGQVAILLFKSG 128

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460801|gb|EFX71839.1| hypothetical protein DAPPUDRAFT_308639 [Daphnia pulex]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M+DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MADRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137630|ref|NP_477408.1| cytoplasmic dynein light chain 2, isoform A [Drosophila melanogaster] gi|24580844|ref|NP_722698.1| cytoplasmic dynein light chain 2, isoform B [Drosophila melanogaster] gi|386768944|ref|NP_001245836.1| cytoplasmic dynein light chain 2, isoform C [Drosophila melanogaster] gi|194854054|ref|XP_001968277.1| GG24601 [Drosophila erecta] gi|194854064|ref|XP_001968279.1| GG24789 [Drosophila erecta] gi|195350331|ref|XP_002041694.1| GM16816 [Drosophila sechellia] gi|195470479|ref|XP_002087534.1| GE17560 [Drosophila yakuba] gi|195575763|ref|XP_002077746.1| GD23096 [Drosophila simulans] gi|328783818|ref|XP_003250346.1| PREDICTED: hypothetical protein LOC725312 [Apis mellifera] gi|328783820|ref|XP_003250347.1| PREDICTED: hypothetical protein LOC725312 [Apis mellifera] gi|328783822|ref|XP_003250348.1| PREDICTED: hypothetical protein LOC725312 [Apis mellifera] gi|340729570|ref|XP_003403073.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Bombus terrestris] gi|340729572|ref|XP_003403074.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Bombus terrestris] gi|350411703|ref|XP_003489427.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Bombus impatiens] gi|380018773|ref|XP_003693297.1| PREDICTED: dynein light chain 2, cytoplasmic-like isoform 1 [Apis florea] gi|380018775|ref|XP_003693298.1| PREDICTED: dynein light chain 2, cytoplasmic-like isoform 2 [Apis florea] gi|380018777|ref|XP_003693299.1| PREDICTED: dynein light chain 2, cytoplasmic-like isoform 3 [Apis florea] gi|14285421|sp|O96860.1|DYL2_DROME RecName: Full=Dynein light chain 2, cytoplasmic; AltName: Full=8 kDa dynein light chain gi|4097199|gb|AAD00073.1| 8kd dynein light chain [Drosophila melanogaster] gi|7296088|gb|AAF51383.1| cytoplasmic dynein light chain 2, isoform A [Drosophila melanogaster] gi|17862772|gb|AAL39863.1| LP02196p [Drosophila melanogaster] gi|22945489|gb|AAN10465.1| cytoplasmic dynein light chain 2, isoform B [Drosophila melanogaster] gi|190660144|gb|EDV57336.1| GG24601 [Drosophila erecta] gi|190660146|gb|EDV57338.1| GG24789 [Drosophila erecta] gi|194123467|gb|EDW45510.1| GM16816 [Drosophila sechellia] gi|194173635|gb|EDW87246.1| GE17560 [Drosophila yakuba] gi|194189755|gb|EDX03331.1| GD23096 [Drosophila simulans] gi|220947638|gb|ACL86362.1| Cdlc2-PA [synthetic construct] gi|220956998|gb|ACL91042.1| Cdlc2-PA [synthetic construct] gi|254939729|gb|ACT88127.1| AT22575p [Drosophila melanogaster] gi|307187836|gb|EFN72781.1| Dynein light chain 2, cytoplasmic [Camponotus floridanus] gi|332027401|gb|EGI67484.1| Dynein light chain 2, cytoplasmic [Acromyrmex echinatior] gi|383291275|gb|AFH03513.1| cytoplasmic dynein light chain 2, isoform C [Drosophila melanogaster]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386038|ref|XP_002051711.1| GJ17025 [Drosophila virilis] gi|194148168|gb|EDW63866.1| GJ17025 [Drosophila virilis]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/89 (97%), Positives = 89/89 (100%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQD+VDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDSVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVA+LLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAVLLFKSG 89

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	1.0	1.0	1.0	5.6e-45
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	1.0	1.0	0.988	1.5e-44
ZFIN|ZDB-GENE-040426-1961	89	dynll1 "dynein, light chain, L	1.0	1.0	0.977	3.1e-44
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	1.0	0.978	0.966	3.9e-44
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	1.0	1.0	0.966	3.9e-44
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	1.0	0.978	0.966	3.9e-44
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	1.0	1.0	0.966	3.9e-44
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	1.0	1.0	0.966	3.9e-44
MGI|MGI:1915347	89	Dynll2 "dynein light chain LC8	1.0	1.0	0.966	3.9e-44
RGD|619860	89	Dynll2 "dynein light chain LC8	1.0	1.0	0.966	3.9e-44

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-040426-1961 dynll1 "dynein, light chain, LC8-type 1" [Danio rerio (taxid:7955)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 87/89 (97%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSEEMQQDAV+CATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    63 NFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    63 NFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

MGI|MGI:1915347 Dynll2 "dynein light chain LC8-type 2" [Mus musculus (taxid:10090)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0030286 "dynein complex" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

RGD|619860 Dynll2 "dynein light chain LC8-type 2" [Rattus norvegicus (taxid:10116)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/89 (96%), Positives = 89/89 (100%)

Query:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
             MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
             NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEP

GO:0008092 "cytoskeletal protein binding" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA;ISO

GO:0030286 "dynein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.9438	1.0	1.0	yes	N/A
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.5	0.9438	0.9767	yes	N/A
P61273	DYL1_MACFA	No assigned EC number	0.9438	1.0	1.0	N/A	N/A
Q9UR05	DYL1_SCHPO	No assigned EC number	0.7738	0.9438	0.9882	yes	N/A
Q78P75	DYL2_RAT	No assigned EC number	0.9662	1.0	1.0	yes	N/A
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.9662	1.0	1.0	yes	N/A
Q86A88	DYL_DICDI	No assigned EC number	0.6263	1.0	0.9780	yes	N/A
O94111	DYL1_EMENI	No assigned EC number	0.7160	0.9101	0.8617	yes	N/A
Q6CWX4	DYL1_KLULA	No assigned EC number	0.4705	0.9550	0.9770	yes	N/A
Q94758	DYL1_SCHMA	No assigned EC number	0.7415	1.0	1.0	N/A	N/A
P63170	DYL1_RAT	No assigned EC number	0.9438	1.0	1.0	no	N/A
P61285	DYL1_BOVIN	No assigned EC number	0.9438	1.0	1.0	no	N/A
Q759T0	DYL1_ASHGO	No assigned EC number	0.4942	0.9775	0.9886	yes	N/A
O02414	DYL1_HELCR	No assigned EC number	0.9325	1.0	1.0	N/A	N/A
Q24117	DYL1_DROME	No assigned EC number	1.0	1.0	1.0	yes	N/A
Q39580	DYL1_CHLRE	No assigned EC number	0.9529	0.9550	0.9340	N/A	N/A
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.9662	1.0	1.0	yes	N/A
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.9662	1.0	1.0	yes	N/A
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.5287	0.9775	0.9560	yes	N/A
P63167	DYL1_HUMAN	No assigned EC number	0.9438	1.0	1.0	no	N/A
Q94748	DYL2_SCHMA	No assigned EC number	0.7528	1.0	1.0	N/A	N/A
Q02647	DYL1_YEAST	No assigned EC number	0.4782	1.0	0.9673	yes	N/A
O96860	DYL2_DROME	No assigned EC number	0.9887	1.0	1.0	yes	N/A
P63168	DYL1_MOUSE	No assigned EC number	0.9438	1.0	1.0	no	N/A
P63169	DYL1_RABIT	No assigned EC number	0.9438	1.0	1.0	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	2e-64
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	2e-58
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-21

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  188 bits (479), Expect = 2e-64
 Identities = 83/89 (93%), Positives = 88/89 (98%)

Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAV+KNADMSE+MQQDA+DCA QALEK+NIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61

Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 62 NFGSYVTHETKHFIYFYLGQVAILLFKSG 90

Length = 90

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  173 bits (440), Expect = 2e-58
 Identities = 68/86 (79%), Positives = 81/86 (94%)

Query: 4  RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63
           KAV+KNADM EEMQ+DA++CA +ALEK+N+EKDIAA+IKKEFDKKY PTWHCIVG+NFG
Sbjct: 1  GKAVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFG 60

Query: 64 SYVTHETRHFIYFYLGQVAILLFKSG 89
          SYVTHET+HFIYFY+GQ+A LLFK+G
Sbjct: 61 SYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 81.2 bits (200), Expect = 2e-21
 Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
           ++ +DM   +Q  A  CA   L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 38  VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97

Query: 65  YVTHETRHFIYFYLGQVAILLFKS 88
           YVTH T  F+YF + +V ILLFK+
Sbjct: 98  YVTHSTGGFLYFSIDKVYILLFKT 121

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG3430|consensus	90		100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.84
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	89.0
PF13742	99	tRNA_anti_2: OB-fold nucleic acid binding domain	83.71
PF15650	89	Tox-REase-9: Restriction endonuclease fold toxin 9	81.25

>KOG3430|consensus

Probab=100.00  E-value=3.3e-44  Score=217.45  Aligned_cols=89  Identities=79%  Similarity=1.265  Sum_probs=86.9

Q ss_pred             CCCCccEEEeCCCCHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeC
Q psy1421           1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYN-IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLG   79 (89)
Q Consensus         1 m~~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~-~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~   79 (89)
                      |++.+++|+.+|||++||+++++++++|+++|+ +++++|..||++||++|||+||||||++|||++||++++|+||++|
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g   80 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG   80 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence            778999999999999999999999999999999 7899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeeC
Q psy1421          80 QVAILLFKSG   89 (89)
Q Consensus        80 ~~~~lv~kt~   89 (89)
                      .+++||||++
T Consensus        81 ~l~illfK~~   90 (90)
T KOG3430|consen   81 VLAILLFKCA   90 (90)
T ss_pred             eEEEEEEecC
Confidence            9999999985

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=6.9e-44  Score=219.05  Aligned_cols=89  Identities=93%  Similarity=1.469  Sum_probs=87.4

Q ss_pred             CCCCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCC
Q psy1421           1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   80 (89)
Q Consensus         1 m~~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~   80 (89)
                      |++.+++|+.+|||++||++|++++.+|++++++++|+|++||+.||++|||+||||||++|||++||++++|+||++|+
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~   81 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ   81 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECC
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeC
Q psy1421          81 VAILLFKSG   89 (89)
Q Consensus        81 ~~~lv~kt~   89 (89)
                      ++|||||+|
T Consensus        82 ~~vLlfK~~   90 (90)
T PTZ00059         82 VAILLFKSG   90 (90)
T ss_pred             EEEEEEecC
Confidence            999999997

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=9e-43  Score=213.32  Aligned_cols=89  Identities=58%  Similarity=1.039  Sum_probs=85.3

Q ss_pred             CCCCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCC
Q psy1421           1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   80 (89)
Q Consensus         1 m~~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~   80 (89)
                      |++.+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++||+++||+++++++|++++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~   80 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGN   80 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETT
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeC
Q psy1421          81 VAILLFKSG   89 (89)
Q Consensus        81 ~~~lv~kt~   89 (89)
                      ++|||||||
T Consensus        81 ~~~li~kt~   89 (89)
T PF01221_consen   81 IAFLIFKTQ   89 (89)
T ss_dssp             EEEEEEEE-
T ss_pred             EEEEEEecC
Confidence            999999996

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=6.5e-41  Score=216.56  Aligned_cols=87  Identities=45%  Similarity=0.815  Sum_probs=83.5

Q ss_pred             CCccEEEeCCCCHHHHHHHHHHHHHHHhhc---CchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeC
Q psy1421           3 DRKAVIKNADMSEEMQQDAVDCATQALEKY---NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLG   79 (89)
Q Consensus         3 ~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~---~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~   79 (89)
                      +.+++|+.+|||++||++|+++|..|++++   ++++++|++||+.||++|||+||||||++|||++||++++|+||++|
T Consensus        33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig  112 (128)
T PLN03058         33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID  112 (128)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            468999999999999999999999999997   46799999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeeC
Q psy1421          80 QVAILLFKSG   89 (89)
Q Consensus        80 ~~~~lv~kt~   89 (89)
                      +++|||||||
T Consensus       113 ~~aiLLfKt~  122 (128)
T PLN03058        113 KVYILLFKTA  122 (128)
T ss_pred             CEEEEEEecc
Confidence            9999999996

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.84  E-value=0.00032  Score=41.35  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             CchHHHHHHHHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEe
Q psy1421          33 NIEKDIAAYIKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFK   87 (89)
Q Consensus        33 ~~~~~iA~~iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~k   87 (89)
                      .+..++++.|.+.+.++||..+-||+++ +|....... ..|--...++..+++|+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            5567899999999999999999999999 576555544 77888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=89.00  E-value=5.2  Score=29.71  Aligned_cols=54  Identities=22%  Similarity=0.416  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHhcccCC-CceEEEEeC------C--ceeeEEEcCCcEEE-EEeCCEEEEEEee
Q psy1421          35 EKDIAAYIKKEFDKKYN-PTWHCIVGR------N--FGSYVTHETRHFIY-FYLGQVAILLFKS   88 (89)
Q Consensus        35 ~~~iA~~iK~~lD~~yG-~~Wh~vVG~------~--fg~~~th~~~~~~~-f~~~~~~~lv~kt   88 (89)
                      ..+.|..||+.||+..- -.+-++|-.      +  |.....+....++. |.-|+..++||||
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            46799999999999654 458888833      1  22222355666665 6679999999998

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain

Probab=83.71  E-value=4.9  Score=24.49  Aligned_cols=47  Identities=26%  Similarity=0.687  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhccc--CCCceEEEEeC--CceeeEEEcCCcEEEEEe----CCEEEEEEee
Q psy1421          36 KDIAAYIKKEFDKK--YNPTWHCIVGR--NFGSYVTHETRHFIYFYL----GQVAILLFKS   88 (89)
Q Consensus        36 ~~iA~~iK~~lD~~--yG~~Wh~vVG~--~fg~~~th~~~~~~~f~~----~~~~~lv~kt   88 (89)
                      .++.+.||+.+++.  ++..|  |.|+  ++-   .| .+..+||.+    ..+.+.+|++
T Consensus         5 s~l~~~ik~~le~~~~~~~vw--V~GEIs~~~---~~-~~gh~YftLkD~~a~i~~~~~~~   59 (99)
T PF13742_consen    5 SELNNYIKDLLERDPPLPNVW--VEGEISNLK---RH-SSGHVYFTLKDEEASISCVIFRS   59 (99)
T ss_pred             HHHHHHHHHHHhcCCCcCCEE--EEEEEeecE---EC-CCceEEEEEEcCCcEEEEEEEHH
Confidence            57889999999998  67888  5666  343   22 667788887    3567777764

>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9

Probab=81.25  E-value=1.4  Score=26.97  Aligned_cols=17  Identities=29%  Similarity=0.640  Sum_probs=15.3

Q ss_pred             HHHHhcccCCCceEEEE
Q psy1421          42 IKKEFDKKYNPTWHCIV   58 (89)
Q Consensus        42 iK~~lD~~yG~~Wh~vV   58 (89)
                      =|++|...||.+|.+||
T Consensus        70 Y~~el~~~~G~~W~~~l   86 (89)
T PF15650_consen   70 YKQELEKIYGGGWKTRL   86 (89)
T ss_pred             HHHHhcCccCCCeeEEe
Confidence            47889999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	89
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		3e-49
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		4e-49
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-48
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		1e-48
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		5e-48
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		5e-48
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		5e-48
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		1e-46
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-46
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		8e-45
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		5e-44
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		5e-40
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		1e-23

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score =  189 bits (480), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score =  189 bits (480), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score =  187 bits (475), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFK G
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKEG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score =  187 bits (475), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE DIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score =  185 bits (470), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 6  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 65
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 66 NFGSYVTHETKHFIYFYLGQVAILLFKSG 94

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score =  185 bits (470), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score =  185 bits (470), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 4  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 63
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 64 NFGSYVTHETKHFIYFYLGQVAILLFKSG 92

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score =  181 bits (458), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M DRKAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/91 (94%), Positives = 89/91 (97%), Gaps = 2/91 (2%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 --NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
            NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 SGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 81/85 (95%), Positives = 85/85 (100%)
Query: 5  KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
          KAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGS
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 65 YVTHETRHFIYFYLGQVAILLFKSG 89
          YVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 YVTHETKHFIYFYLGQVAILLFKSG 85

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score =  172 bits (436), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 86/89 (96%)
Query: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
          M+DRKAVIKNADM E++QQDA+DCA QALEKYNIEKDIAA+IKKEFD+K+NPTWHC+VGR
Sbjct: 1  MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          NFGSYVTHET HFIYFY+GQVA+LLFKSG
Sbjct: 61 NFGSYVTHETHHFIYFYIGQVAVLLFKSG 89

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score =  159 bits (401), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 83/89 (93%)
Query: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
           +  R +V+KN DM+EEMQ DA+DCA QAL+KYN+EKDIAA+IKKEFD+KY+PTWHC+VGR
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGR 73
Query: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
           NFGSYVTHET++FIYFY+GQVAILLFKSG
Sbjct: 74  NFGSYVTHETKNFIYFYIGQVAILLFKSG 102

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 1  MSDRK---AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCI 57
          MSD      ++K +D+++++++D +  +  AL+KY +E+DIA  +KK+ D KY  TWH I
Sbjct: 6  MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65
Query: 58 VGRNFGSYVTHETRHFIYFYLGQVAILLFKS 88
          VG+NFGSYVTHE  HF+YFY+G +A L+FK+
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	2e-53
1yo3_A	102	Dynein light chain 1; structural genomics consorti	6e-53

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  160 bits (407), Expect = 2e-53
 Identities = 44/92 (47%), Positives = 67/92 (72%), Gaps = 3/92 (3%)

Query: 1  MSDR---KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCI 57
          MSD      ++K +D+++++++D +  +  AL+KY +E+DIA  +KK+ D KY  TWH I
Sbjct: 6  MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65

Query: 58 VGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
          VG+NFGSYVTHE  HF+YFY+G +A L+FK+ 
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  159 bits (404), Expect = 6e-53
 Identities = 69/89 (77%), Positives = 83/89 (93%)

Query: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
           +  R +V+KN DM+EEMQ DA+DCA QAL+KYN+EKDIAA+IKKEFD+KY+PTWHC+VGR
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGR 73

Query: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
           NFGSYVTHET++FIYFY+GQVAILLFKSG
Sbjct: 74  NFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=1.2e-46  Score=230.03  Aligned_cols=89  Identities=85%  Similarity=1.397  Sum_probs=86.2

Q ss_pred             CCCCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCC
Q psy1421           1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   80 (89)
Q Consensus         1 m~~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~   80 (89)
                      |++.+++|+.+|||++||++|+++|.+|+++++.++++|++||++||++|||+||||||++|||++||++++|+||++|+
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~   80 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ   80 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeC
Q psy1421          81 VAILLFKSG   89 (89)
Q Consensus        81 ~~~lv~kt~   89 (89)
                      ++|||||||
T Consensus        81 ~~iLlfKtg   89 (89)
T 3rjs_A           81 VAVLLFKSG   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999999998

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-45  Score=224.65  Aligned_cols=86  Identities=48%  Similarity=0.986  Sum_probs=84.9

Q ss_pred             CccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCCEEE
Q psy1421           4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI   83 (89)
Q Consensus         4 ~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~~~~   83 (89)
                      .+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++|+++|
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai   91 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF   91 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q psy1421          84 LLFKSG   89 (89)
Q Consensus        84 lv~kt~   89 (89)
                      ||||||
T Consensus        92 LlfKtg   97 (97)
T 4ds1_A           92 LVFKTA   97 (97)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999997

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=1.3e-43  Score=221.24  Aligned_cols=87  Identities=79%  Similarity=1.337  Sum_probs=84.0

Q ss_pred             CCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCCEE
Q psy1421           3 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA   82 (89)
Q Consensus         3 ~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~~~   82 (89)
                      ..+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++|+++
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~a   95 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVA   95 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEE
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeC
Q psy1421          83 ILLFKSG   89 (89)
Q Consensus        83 ~lv~kt~   89 (89)
                      |||||||
T Consensus        96 iLlfKt~  102 (102)
T 1yo3_A           96 ILLFKSG  102 (102)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	89
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	5e-52

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  155 bits (393), Expect = 5e-52
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 3  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
          DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 60

Query: 63 GSYVTHETRHFIYFYLGQVAILLFKSG 89
          GSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 GSYVTHETRHFIYFYLGQVAILLFKSG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	83.33
d2nn6d2	89	Exosome complex exonuclease RRP46 {Human (Homo sap	83.3
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	80.83
d2b1xa1	162	Naphthalene 1,2-dioxygenase alpha subunit, N-domai	80.41

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.2e-45  Score=220.92  Aligned_cols=87  Identities=100%  Similarity=1.511  Sum_probs=85.3

Q ss_pred             CCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCCEE
Q psy1421           3 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA   82 (89)
Q Consensus         3 ~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~~~   82 (89)
                      +.+++|+.+|||++||++|+++|.+|++++++++|+|++||++||++|||+||||||++|||++||++++|+||++|+++
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~   80 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA   80 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEE
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeC
Q psy1421          83 ILLFKSG   89 (89)
Q Consensus        83 ~lv~kt~   89 (89)
                      |||||||
T Consensus        81 ~Ll~Ktg   87 (87)
T d3e2ba1          81 ILLFKSG   87 (87)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999998

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=83.33  E-value=2.2  Score=25.55  Aligned_cols=44  Identities=7%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             HHHHHHhcccCCCceEEEEeCC-ceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421          40 AYIKKEFDKKYNPTWHCIVGRN-FGSYVTHETRHFIYFYLGQVAILLFKS   88 (89)
Q Consensus        40 ~~iK~~lD~~yG~~Wh~vVG~~-fg~~~th~~~~~~~f~~~~~~~lv~kt   88 (89)
                      +...+++++-|.+.||.|.=.+ .-     ++|.|+-+.+++..++|+|.
T Consensus        21 ~~f~~E~~~if~~~W~~v~~~~elp-----~~Gd~~~~~i~~~~~vv~R~   65 (150)
T d2bmoa1          21 ELFQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQ   65 (150)
T ss_dssp             HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCeEeehHHHcC-----CCcceeeeeecCceeEEEec
Confidence            3456788888999999986552 32     46888888999999999985

>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribonuclease PH domain 2-like
superfamily: Ribonuclease PH domain 2-like
family: Ribonuclease PH domain 2-like
domain: Exosome complex exonuclease RRP46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=1.2  Score=23.92  Aligned_cols=38  Identities=13%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCc
Q psy1421          10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPT   53 (89)
Q Consensus        10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~   53 (89)
                      ...|+++.-.++++.|++|..      +|.+.+|+.|.++++.+
T Consensus        52 ~g~~s~~~~~~~l~~a~~~~~------~I~~~~r~~l~k~~~k~   89 (89)
T d2nn6d2          52 KGLYSDTELQQCLAAAQAASQ------HVFRFYRESLQRRYSKS   89 (89)
T ss_dssp             EESCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTCC-
T ss_pred             cCCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCC
Confidence            446999999999999999975      58888999998888753

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=80.83  E-value=2.8  Score=25.01  Aligned_cols=43  Identities=12%  Similarity=0.455  Sum_probs=33.5

Q ss_pred             HHHHHhcccCCCceEEEEeCC-ceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421          41 YIKKEFDKKYNPTWHCIVGRN-FGSYVTHETRHFIYFYLGQVAILLFKS   88 (89)
Q Consensus        41 ~iK~~lD~~yG~~Wh~vVG~~-fg~~~th~~~~~~~f~~~~~~~lv~kt   88 (89)
                      ....++++-|.+.|++|-=.+ .-     ++|.|+-+.+++..++|+|.
T Consensus        27 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~ilv~R~   70 (154)
T d1ulia1          27 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQ   70 (154)
T ss_dssp             HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhccCCEEEEEhhhCC-----CCcceeeeecCCcceeEEee
Confidence            445677788999999986542 33     56788889999999999985

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=80.41  E-value=4.2  Score=24.41  Aligned_cols=41  Identities=10%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             HHHhcccCCCceEEEEeCC-ceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421          43 KKEFDKKYNPTWHCIVGRN-FGSYVTHETRHFIYFYLGQVAILLFKS   88 (89)
Q Consensus        43 K~~lD~~yG~~Wh~vVG~~-fg~~~th~~~~~~~f~~~~~~~lv~kt   88 (89)
                      ..+.++-|...|++|-=.+ .-     ++|.++-+.+++..++|||.
T Consensus        35 ~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~~vv~R~   76 (162)
T d2b1xa1          35 DVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRD   76 (162)
T ss_dssp             HHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEEHHHcC-----CccceeeEeecCCceEEEec
Confidence            3467788999999986542 33     45778888899999999874