Psyllid ID: psy14231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA
Secondary Structure (PSIPRED)
cccccHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccEEEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkdgevykLIGPILVKQEMEEAKQNVKKRIDYISAELKrhddtiatldtkqdTHRENLTKLQQQFQQEQAAKMRA
Flexible Loop (DISEMBL)
mkdgevykligpilvkqemEEAKQNVKKRIDYIsaelkrhddtiatLDTKQDTHRENLTKLQQQFQQEQAAKMRA
Low Complexity Region (SEG)
MKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLqqqfqqeqAAKMRA
Disordered region (IsUnstruct)
*****VYKLIGPILVK************RIDYIS*****************************************
Disordered Region (DISOPRED)
**DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH***********************************
Disordered Region (DISEMBL)
MKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ*************
Disordered Region (DISPRO)
***GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDGEVYKLIGPILVxxxxxxxxxxxxxxxxxxxxxLKRHDDTxxxxxxxxxxxxxxxxxxxxxxxxxxxxKMRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q03958	127	Prefoldin subunit 6 OS=Mu	yes	N/A	0.893	0.527	0.522	2e-14
Q9VW56	125	Probable prefoldin subuni	yes	N/A	0.853	0.512	0.546	9e-14
O15212	129	Prefoldin subunit 6 OS=Ho	yes	N/A	0.853	0.496	0.5	8e-13
Q5TJE6	129	Prefoldin subunit 6 OS=Ca	yes	N/A	0.853	0.496	0.5	8e-13
Q17Q89	129	Prefoldin subunit 6 OS=Bo	yes	N/A	0.853	0.496	0.5	8e-13
A8Y197	128	Probable prefoldin subuni	N/A	N/A	0.84	0.492	0.396	3e-09
P52554	126	Probable prefoldin subuni	yes	N/A	0.84	0.5	0.396	2e-08
O14450	114	Probable prefoldin subuni	yes	N/A	0.533	0.350	0.55	4e-06

>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 52/67 (77%)

Query: 6   VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
           V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +LQQ+F
Sbjct: 56  VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115

Query: 66  QQEQAAK 72
           Q+ QAAK
Sbjct: 116 QRAQAAK 122

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Mus musculus (taxid: 10090)

>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +VYKL GP+LVKQE+EE++QNV KRI+YIS ELK   D +  ++     HRE++ K Q
Sbjct: 56  DNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQ 115

Query: 63  QQFQ 66
           QQ Q
Sbjct: 116 QQCQ 119

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 49/64 (76%)

Query: 6   VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
           V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +LQQ+F
Sbjct: 56  VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115

Query: 66  QQEQ 69
           Q+ Q
Sbjct: 116 QRAQ 119

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 49/64 (76%)

Query: 6   VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
           V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +LQQ+F
Sbjct: 56  VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115

Query: 66  QQEQ 69
           Q+ Q
Sbjct: 116 QRAQ 119

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Canis familiaris (taxid: 9615)

>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 49/64 (76%)

Query: 6   VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
           V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +LQQ+F
Sbjct: 56  VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEF 115

Query: 66  QQEQ 69
           Q+ Q
Sbjct: 116 QRAQ 119

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 46/63 (73%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +VYKL+GP+LV+Q++EEA+  V+KR+++I +E+KR + +I  ++ K    R+ +  +Q
Sbjct: 51  DSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQ 110

Query: 63  QQF 65
           + F
Sbjct: 111 KAF 113

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Required for positioning of the mitotic spindle.

Caenorhabditis briggsae (taxid: 6238)

>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 44/63 (69%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +VYKLIG +LV+Q++EEA+  V+KR+++I +E KR + +I+ +  K    R+ +  +Q
Sbjct: 51  DSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQ 110

Query: 63  QQF 65
           + F
Sbjct: 111 KSF 113

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). Required for positioning of the mitotic spindle.

Caenorhabditis elegans (taxid: 6239)

>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%)

Query: 3  DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDD 42
          D  +YK IGP LVKQ  EEAK NVK R+D+I+ E+ R ++
Sbjct: 45 DSNIYKQIGPTLVKQSHEEAKTNVKTRLDFINKEIARLEN 84

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
291231543	130	PREDICTED: HLA class II region expressed	0.946	0.546	0.690	1e-20
307206210	128	Prefoldin subunit 6 [Harpegnathos saltat	0.893	0.523	0.716	8e-20
340725404	132	PREDICTED: prefoldin subunit 6-like [Bom	0.906	0.515	0.647	2e-17
156540489	126	PREDICTED: prefoldin subunit 6-like isof	0.92	0.547	0.638	2e-17
66525117	132	PREDICTED: prefoldin subunit 6-like [Api	0.893	0.507	0.656	2e-17
350403907	132	PREDICTED: prefoldin subunit 6-like isof	0.906	0.515	0.647	2e-17
350403909	129	PREDICTED: prefoldin subunit 6-like isof	0.906	0.527	0.647	3e-17
383861027	132	PREDICTED: prefoldin subunit 6-like [Meg	0.893	0.507	0.641	5e-17
332022228	129	Prefoldin subunit 6 [Acromyrmex echinati	0.893	0.519	0.626	8e-16
357488567	129	Prefoldin subunit [Medicago truncatula]	0.973	0.565	0.575	2e-15

>gi|291231543|ref|XP_002735724.1| PREDICTED: HLA class II region expressed gene KE2-like [Saccoglossus kowalevskii]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 63/71 (88%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           DG+V+KL+GP+LVKQ++EEAKQNV KRI+YIS+ELKR +D+I  LD KQDTHRE+L+KLQ
Sbjct: 58  DGKVFKLMGPVLVKQDVEEAKQNVGKRIEYISSELKRIEDSIKDLDKKQDTHRESLSKLQ 117

Query: 63  QQFQQEQAAKM 73
           Q+FQQ Q  +M
Sbjct: 118 QKFQQAQMKQM 128

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|307206210|gb|EFN84290.1| Prefoldin subunit 6 [Harpegnathos saltator]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +V+KLIGP+LVKQ++EEAKQNV KR+DYI+AELKR +D IATLD K DTHRE L K+Q
Sbjct: 53  DNDVFKLIGPVLVKQDLEEAKQNVTKRMDYITAELKRMEDLIATLDKKMDTHREALEKIQ 112

Query: 63  QQFQQEQ 69
           Q FQQ Q
Sbjct: 113 QTFQQAQ 119

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725404|ref|XP_003401060.1| PREDICTED: prefoldin subunit 6-like [Bombus terrestris]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           + +V+KLIGP+L+KQ++EEAKQNV KR++YIS+ELKR ++ I TLD KQDTHRE L K Q
Sbjct: 56  EDDVFKLIGPVLIKQDVEEAKQNVAKRMEYISSELKRVEELITTLDKKQDTHRETLEKYQ 115

Query: 63  QQFQQEQA 70
           Q FQQ Q 
Sbjct: 116 QMFQQAQV 123

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540489|ref|XP_001599529.1| PREDICTED: prefoldin subunit 6-like isoform 1 [Nasonia vitripennis] gi|156540491|ref|XP_001599555.1| PREDICTED: prefoldin subunit 6-like isoform 2 [Nasonia vitripennis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 3/72 (4%)

Query: 4   GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63
            EVYKLIGP+L+KQE+ EAK+NV KR+ +ISAE+K  ++ I TLD KQ+THRENL KLQQ
Sbjct: 54  NEVYKLIGPVLIKQELIEAKENVNKRMAFISAEIKHTENLIVTLDKKQETHRENLDKLQQ 113

Query: 64  QFQQEQAAKMRA 75
            FQQ   A++RA
Sbjct: 114 SFQQ---AQIRA 122

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66525117|ref|XP_625185.1| PREDICTED: prefoldin subunit 6-like [Apis mellifera] gi|380016384|ref|XP_003692165.1| PREDICTED: prefoldin subunit 6-like [Apis florea]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 56/67 (83%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           + +V+KLIGP+L+KQ++EEAKQNV KR++YIS+ELKR ++ I TLD KQDTHRE L K Q
Sbjct: 56  EDDVFKLIGPVLIKQDVEEAKQNVAKRMEYISSELKRVEELITTLDKKQDTHRETLEKYQ 115

Query: 63  QQFQQEQ 69
           Q FQQ Q
Sbjct: 116 QMFQQAQ 122

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403907|ref|XP_003486945.1| PREDICTED: prefoldin subunit 6-like isoform 1 [Bombus impatiens]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           + +V+KLIGP+L+KQ++EEAKQNV KR++YIS+ELKR ++ I TLD KQDTHRE L K Q
Sbjct: 56  EDDVFKLIGPVLIKQDVEEAKQNVAKRMEYISSELKRVEELITTLDKKQDTHRETLEKYQ 115

Query: 63  QQFQQEQA 70
           Q FQQ Q 
Sbjct: 116 QMFQQAQV 123

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403909|ref|XP_003486946.1| PREDICTED: prefoldin subunit 6-like isoform 2 [Bombus impatiens]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           + +V+KLIGP+L+KQ++EEAKQNV KR++YIS+ELKR ++ I TLD KQDTHRE L K Q
Sbjct: 53  EDDVFKLIGPVLIKQDVEEAKQNVAKRMEYISSELKRVEELITTLDKKQDTHRETLEKYQ 112

Query: 63  QQFQQEQA 70
           Q FQQ Q 
Sbjct: 113 QMFQQAQV 120

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861027|ref|XP_003705988.1| PREDICTED: prefoldin subunit 6-like [Megachile rotundata]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 56/67 (83%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +V+KLIGP+L+KQ++++AKQNV KR++YIS+ELKR ++ I TLD KQDTHRE L K Q
Sbjct: 56  DNDVFKLIGPVLIKQDLKDAKQNVAKRMEYISSELKRVEELITTLDKKQDTHRETLEKYQ 115

Query: 63  QQFQQEQ 69
           Q FQQ Q
Sbjct: 116 QMFQQVQ 122

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022228|gb|EGI62543.1| Prefoldin subunit 6 [Acromyrmex echinatior]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           + +V+KLIGP+LVKQE+ EAKQNV KR+DYI +ELKR DD ++TLD K D+ R+ + KLQ
Sbjct: 53  ENDVFKLIGPVLVKQELCEAKQNVDKRMDYIKSELKRVDDLMSTLDKKLDSQRDVIDKLQ 112

Query: 63  QQFQQEQ 69
           Q FQQ Q
Sbjct: 113 QAFQQAQ 119

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357488567|ref|XP_003614571.1| Prefoldin subunit [Medicago truncatula] gi|355515906|gb|AES97529.1| Prefoldin subunit [Medicago truncatula]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 55/73 (75%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D  VYKLIGP+LVKQ++ EA  NV+KRI+YISAELKR D T+  L+ KQ++ +E + KLQ
Sbjct: 57  DANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKETIMKLQ 116

Query: 63  QQFQQEQAAKMRA 75
           Q+ Q  QA K +A
Sbjct: 117 QKMQSLQAGKGKA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2198289	129	PFD6 "prefoldin 6" [Arabidopsi	0.986	0.573	0.5	3.8e-14
FB|FBgn0036918	125	CG7770 [Drosophila melanogaste	0.773	0.464	0.534	3.1e-12
UNIPROTKB|Q17Q89	129	PFDN6 "Prefoldin subunit 6" [B	0.973	0.565	0.44	1.7e-11
UNIPROTKB|Q5TJE6	129	PFDN6 "Prefoldin subunit 6" [C	0.973	0.565	0.44	1.7e-11
UNIPROTKB|O15212	129	PFDN6 "Prefoldin subunit 6" [H	0.973	0.565	0.44	1.7e-11
UNIPROTKB|F1RZT2	129	PFDN6 "Uncharacterized protein	0.973	0.565	0.44	1.7e-11
MGI|MGI:95908	127	H2-Ke2 "H2-K region expressed	0.933	0.551	0.444	2.2e-11
ZFIN|ZDB-GENE-040426-1589	126	pfdn6 "prefoldin subunit 6" [D	0.746	0.444	0.482	4.5e-11
RGD|1303006	127	Pfdn6 "prefoldin subunit 6" [R	0.786	0.464	0.475	9.4e-11
WB|WBGene00009004	126	pfd-6 [Caenorhabditis elegans	0.786	0.468	0.389	2.6e-08

TAIR|locus:2198289 PFD6 "prefoldin 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 37/74 (50%), Positives = 49/74 (66%)

Query:     2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
             +D  VYKLIGP+LVKQ++ EA  NV+KRI+YISAELKR D  +  ++ KQ+  RE + KL
Sbjct:    56 EDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKL 115

Query:    62 XXXXXXXXAAKMRA 75
                     A K +A
Sbjct:   116 QQRLQTIQAGKAKA 129

GO:0005886 "plasma membrane" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;IPI

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

FB|FBgn0036918 CG7770 [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query:     3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             D +VYKL GP+LVKQE+EE++QNV KRI+YIS ELK   D +  ++     HRE++ K
Sbjct:    56 DNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAK 113

GO:0016272 "prefoldin complex" evidence=ISS;IDA

GO:0051087 "chaperone binding" evidence=ISS

GO:0006458 "'de novo' protein folding" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q17Q89 PFDN6 "Prefoldin subunit 6" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQ 110

Query:    61 LXXXXXXXXAAKMRA 75
             L        AAK  A
Sbjct:   111 LQQEFQRAQAAKAGA 125

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5TJE6 PFDN6 "Prefoldin subunit 6" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQ 110

Query:    61 LXXXXXXXXAAKMRA 75
             L        AAK  A
Sbjct:   111 LQQEFQRAQAAKAGA 125

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|O15212 PFDN6 "Prefoldin subunit 6" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQ 110

Query:    61 LXXXXXXXXAAKMRA 75
             L        AAK  A
Sbjct:   111 LQQEFQRAQAAKAGA 125

GO:0016272 "prefoldin complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IDA

GO:0006457 "protein folding" evidence=NAS;TAS

GO:0051087 "chaperone binding" evidence=IDA

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

UNIPROTKB|F1RZT2 PFDN6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRELERQSEQQRETLAQ 110

Query:    61 LXXXXXXXXAAKMRA 75
             L        AAK  A
Sbjct:   111 LQQEFQRAQAAKAGA 125

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:95908 H2-Ke2 "H2-K region expressed gene 2" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/72 (44%), Positives = 47/72 (65%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQ 110

Query:    61 LXXXXXXXXAAK 72
             L        AAK
Sbjct:   111 LQQEFQRAQAAK 122

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO

GO:0051131 "chaperone-mediated protein complex assembly" evidence=ISO

ZFIN|ZDB-GENE-040426-1589 pfdn6 "prefoldin subunit 6" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 27/56 (48%), Positives = 43/56 (76%)

Query:     6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
             VYKLIGP+LVKQ+++EAK  V KR++YI+ E++R++  +  ++ K + HRE L+ L
Sbjct:    56 VYKLIGPVLVKQDLDEAKATVGKRLEYINGEIQRYETLLKEMERKSEQHREVLSSL 111

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|1303006 Pfdn6 "prefoldin subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query:     3 DGE--VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60
             DG   V+KL+GP+LVKQE+ EA+  V KR+DYI+AE+KR++  +  L+ + +  RE L +
Sbjct:    51 DGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQ 110

Query:    61 L 61
             L
Sbjct:   111 L 111

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016272 "prefoldin complex" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA;ISO

WB|WBGene00009004 pfd-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 23/59 (38%), Positives = 41/59 (69%)

Query:     3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
             D +VYKLIG +LV+Q++EEA+  V+KR+++I +E KR + +I+ +  K    R+ +  +
Sbjct:    51 DSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNM 109

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14450	PFD6_SCHPO	No assigned EC number	0.55	0.5333	0.3508	yes	N/A
Q03958	PFD6_MOUSE	No assigned EC number	0.5223	0.8933	0.5275	yes	N/A
Q9VW56	PFD6_DROME	No assigned EC number	0.5468	0.8533	0.512	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
cd00632	105	cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin	2e-06
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	5e-05

>gnl|CDD|238345 cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D EVYKL+G +LVKQE EEA+  +K+R++ I   +KR +     L  K    +E + + Q
Sbjct: 45  DAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104

Query: 63  Q 63
           +
Sbjct: 105 K 105

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. Length = 105

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 3   DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
           D +VYKLIG +LVKQ+ EE K+ +++R + +  E+K  +  +  L+ + +  +E L KL 
Sbjct: 44  DTKVYKLIGDVLVKQDKEEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLF 103

Query: 63  QQF 65
            Q 
Sbjct: 104 GQQ 106

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG3478|consensus	120		99.93
PRK09343	121	prefoldin subunit beta; Provisional	99.76
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.69
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.68
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.57
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.18
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.74
PRK03947	140	prefoldin subunit alpha; Reviewed	97.97
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	96.98
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	96.86
KOG4098|consensus	140		96.8
KOG3501|consensus	114		96.61
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.49
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	96.48
PRK14011	144	prefoldin subunit alpha; Provisional	96.48
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	95.85
PRK03947	140	prefoldin subunit alpha; Reviewed	95.54
PF13758	99	Prefoldin_3: Prefoldin subunit	94.43
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	93.66
KOG3048|consensus	153		92.61
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.59
PF14282	106	FlxA: FlxA-like protein	92.47
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	91.54
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.63
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	90.59
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	90.56
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.53
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	89.81
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	89.57
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	89.55
KOG1760|consensus	131		89.42
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	89.04
PRK01203	130	prefoldin subunit alpha; Provisional	88.15
COG5293	591	Predicted ATPase [General function prediction only	88.07
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	87.98
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	87.85
PRK10884	206	SH3 domain-containing protein; Provisional	87.81
PF04508	23	Pox_A_type_inc: Viral A-type inclusion protein rep	86.68
PRK08032	462	fliD flagellar capping protein; Reviewed	86.1
PF07195	239	FliD_C: Flagellar hook-associated protein 2 C-term	86.08
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	86.01
PRK05759	156	F0F1 ATP synthase subunit B; Validated	85.85
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	85.75
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	85.44
PRK08475	167	F0F1 ATP synthase subunit B; Validated	85.24
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.23
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	85.09
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	84.98
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.97
PF07195	239	FliD_C: Flagellar hook-associated protein 2 C-term	84.84
PRK07352	174	F0F1 ATP synthase subunit B; Validated	84.75
PHA01750	75	hypothetical protein	84.53
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	84.51
PRK14011	144	prefoldin subunit alpha; Provisional	84.48
KOG1655|consensus	218		84.32
PF14282	106	FlxA: FlxA-like protein	84.31
PF05565	162	Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840	84.28
PRK08032	462	fliD flagellar capping protein; Reviewed	83.92
PRK06231	205	F0F1 ATP synthase subunit B; Validated	83.84
PRK09039	343	hypothetical protein; Validated	83.43
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	83.4
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	83.21
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.08
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	83.0
PRK04406	75	hypothetical protein; Provisional	82.92
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	82.68
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.59
CHL00019	184	atpF ATP synthase CF0 B subunit	82.34
PF14193	83	DUF4315: Domain of unknown function (DUF4315)	82.29
PF06518	93	DUF1104: Protein of unknown function (DUF1104); In	82.23
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	82.15
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	82.1
PRK09343	121	prefoldin subunit beta; Provisional	82.05
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	81.98
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	81.08
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	80.91
PRK02793	72	phi X174 lysis protein; Provisional	80.73
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.58
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	80.54
PRK07737	501	fliD flagellar capping protein; Validated	80.48
PRK04325	74	hypothetical protein; Provisional	80.47
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.28
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	80.24
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	80.22

>KOG3478|consensus

Probab=99.93  E-value=3.9e-26  Score=151.36  Aligned_cols=68  Identities=49%  Similarity=0.750  Sum_probs=65.1

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      +|++|||++||||||||++||++||.+|||||++||+|++..|.+++++.++.++.++++|+.+|.+.
T Consensus        50 ~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~  117 (120)
T KOG3478|consen   50 EDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA  117 (120)
T ss_pred             ccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            69999999999999999999999999999999999999999999999999999999999998887653

>PRK09343 prefoldin subunit beta; Provisional

Probab=99.76  E-value=2.8e-18  Score=113.32  Aligned_cols=64  Identities=25%  Similarity=0.444  Sum_probs=52.1

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK   72 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~   72 (75)
                      +|++|||+||||||++|+++|+.+|++|+||       ++.+|++++++.+.+++++.++|.++++++++.
T Consensus        52 ~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~-------ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         52 DDTPIYKIVGNLLVKVDKTKVEKELKERKEL-------LELRSRTLEKQEKKLREKLKELQAKINEMLSKY  115 (121)
T ss_pred             CcchhHHHhhHHHhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999       455566666666666677777777777776653

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1e-16  Score=107.01  Aligned_cols=65  Identities=31%  Similarity=0.465  Sum_probs=62.5

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM   73 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~   73 (75)
                      +|+.|||.||++||+.++++|..+|++|+|+       ++.+++++++|+++++++|.+||+.++.+++++.
T Consensus        51 eD~~vYk~VG~llvk~~k~~~~~eL~er~E~-------Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~  115 (119)
T COG1382          51 EDAPVYKKVGNLLVKVSKEEAVDELEERKET-------LELRIKTLEKQEEKLQERLEELQSEIQKALGDAA  115 (119)
T ss_pred             cccHHHHHhhhHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6889999999999999999999999999999       9999999999999999999999999999998754

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.68  E-value=1.9e-16  Score=102.42  Aligned_cols=62  Identities=35%  Similarity=0.532  Sum_probs=53.5

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      +|++|||+||||||++|+++|..+|++|++|       ++..++.++++.+.+++++.++|++++++++
T Consensus        48 ~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~-------ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        48 DDTPVYKSVGNLLVKTDKEEAIQELKEKKET-------LELRVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             CcchhHHHhchhhheecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999       6777777777777777777788888877764

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.57  E-value=1.2e-14  Score=93.04  Aligned_cols=61  Identities=39%  Similarity=0.609  Sum_probs=59.0

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      ||+.||++||||||+.|.++|..+|++|+++|.++|++++..++++++++..++.+|.++|
T Consensus        44 ~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          44 DDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999999999999999999887

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.18  E-value=3.5e-11  Score=75.10  Aligned_cols=60  Identities=32%  Similarity=0.562  Sum_probs=53.3

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL   61 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l   61 (75)
                      +|+.||+.||++||++|.+++...++++++++..+|++++..++.++++++.++..|..+
T Consensus        43 ~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   43 DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566999999999999999999999999999999999999999988888888888777643

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.74  E-value=1.7e-08  Score=64.80  Aligned_cols=61  Identities=25%  Similarity=0.453  Sum_probs=51.9

Q ss_pred             CchhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus         2 ~da~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      ++..||..|| +++|..+.++|...+++|+++++++++.++..+..+..+...++..+..++
T Consensus        67 ~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890          67 DDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             CCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6788999999 999999999999999999999887777777777777777777777666554

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=97.97  E-value=2.3e-05  Score=51.80  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=40.8

Q ss_pred             hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231          9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ   64 (75)
Q Consensus         9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~   64 (75)
                      +-++++|..+.++|...+++|+++++..++.++..+..+.++.+.+...+.+++.+
T Consensus        82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         82 LGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34499999999999999999999966666666666666666555555555555543

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.98  E-value=0.002  Score=41.78  Aligned_cols=57  Identities=19%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             hhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231          4 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus         4 a~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      ..+..+-+.+.|.-+.++|..-+++|+++       ++..+..+++....+++.+..++..+++
T Consensus        70 ~v~v~iG~g~~vE~~~~eA~~~l~~r~~~-------l~~~~~~l~~~l~~l~~~~~~~~~~l~~  126 (129)
T cd00584          70 KVLVDLGTGYYVEKDLEEAIEFLDKKIEE-------LTKQIEKLQKELAKLKDQINTLEAELQE  126 (129)
T ss_pred             EEEEEcCCCEEEEecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666778999999999999999999999       4445555555555555555555544443

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=96.86  E-value=0.0041  Score=39.48  Aligned_cols=59  Identities=27%  Similarity=0.415  Sum_probs=44.8

Q ss_pred             hhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231          5 EVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ   63 (75)
Q Consensus         5 ~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~   63 (75)
                      +||=.+| .+.|.-+.++|..-+++|++.++..++++...+..+..+...+...+.+++.
T Consensus        60 ~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  119 (120)
T PF02996_consen   60 KVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ  119 (120)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             EEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444 5788999999999999999997777777777777777777777777666653

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG4098|consensus

Probab=96.80  E-value=0.0066  Score=41.72  Aligned_cols=53  Identities=15%  Similarity=0.334  Sum_probs=40.8

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH   54 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~   54 (75)
                      ++.++|++||.|||..+--++.=.|..-.|+|..=|+.+-.++....+.+++.
T Consensus        60 p~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkf  112 (140)
T KOG4098|consen   60 PTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKF  112 (140)
T ss_pred             hhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999996665555555555544444443

>KOG3501|consensus

Probab=96.61  E-value=0.02  Score=38.07  Aligned_cols=63  Identities=11%  Similarity=0.341  Sum_probs=52.6

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ||..+|..+|...+.+|+.-..+.++...--       .+..|+.++++-.=+...+.+....++++++.
T Consensus        48 de~~~Y~svgrmF~l~dk~a~~s~leak~k~-------see~IeaLqkkK~YlEk~v~eaE~nLrellqs  110 (114)
T KOG3501|consen   48 DEKAVYTSVGRMFMLSDKAAVRSHLEAKMKS-------SEEKIEALQKKKTYLEKTVSEAEQNLRELLQS  110 (114)
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999888877665555       88888888888888888888888888887664

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.017  Score=39.69  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=40.7

Q ss_pred             chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      .+=|..|.++|.+-+++|++.|++-+..+...|..+......+...+.+++++..
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~  139 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA  139 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999997777666666666666666666666666665443

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=96.48  E-value=0.012  Score=38.07  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231         11 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN   57 (75)
Q Consensus        11 GpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~   57 (75)
                      +.++|.-+.++|+.-+++|++.++..++.++..+..+.++...+...
T Consensus        76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~  122 (126)
T TIGR00293        76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE  122 (126)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999995555555555555444444444433

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=96.48  E-value=0.025  Score=38.64  Aligned_cols=50  Identities=20%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231         12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL   61 (75)
Q Consensus        12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l   61 (75)
                      .+.|..+.++|..-+++|++++++-++.+...|..+......++..+..-
T Consensus        79 Gy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k  128 (144)
T PRK14011         79 DIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR  128 (144)
T ss_pred             CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999999988888888888888888777777654433

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=95.85  E-value=0.062  Score=31.75  Aligned_cols=42  Identities=24%  Similarity=0.428  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      |++-|++++.+++..+.+++++.+.+++.+.++...++..+.
T Consensus         1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~   42 (55)
T PF05377_consen    1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS   42 (55)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677789999999999999999999999999999998887654

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=95.54  E-value=0.11  Score=34.17  Aligned_cols=48  Identities=15%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231         25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK   72 (75)
Q Consensus        25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~   72 (75)
                      ++++.++|++.-++.++..++.++.++..+++++..++..++++.+..
T Consensus        91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~  138 (140)
T PRK03947         91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA  138 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999998876654

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=94.43  E-value=0.09  Score=34.31  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             hhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231          9 LIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL   58 (75)
Q Consensus         9 lvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l   58 (75)
                      ++| +-++..+.+.+..-|+.|++|       +...+.+++++++....++
T Consensus        55 ilG~~~~i~Rt~~Qvv~~l~RRiDY-------V~~Ni~tleKql~~aE~kl   98 (99)
T PF13758_consen   55 ILGEGQGITRTREQVVDVLSRRIDY-------VQQNIETLEKQLEAAENKL   98 (99)
T ss_pred             HhCCCCCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence            344 357788999999999999999       6666666666666655443

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=93.66  E-value=0.54  Score=29.70  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      +..++++=++.++..++.++..++.++++.+.+.+++.+++.++.+++
T Consensus        57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445677778889999999999999999999999999999999988764

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>KOG3048|consensus

Probab=92.61  E-value=1.2  Score=31.12  Aligned_cols=55  Identities=18%  Similarity=0.380  Sum_probs=42.0

Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      -|..|.++|+.=-++|+||++++++.++.-++.-......+.   +-+|++.|.+++.
T Consensus        94 yVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~---~v~q~Kv~~al~a  148 (153)
T KOG3048|consen   94 YVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVM---DVLQAKVQTALTA  148 (153)
T ss_pred             EEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            467899999999999999999999999988877666555554   4455666555444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.59  E-value=1.5  Score=33.01  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      .++.+....++.+-.--|.+||++++..+.++..+....++++.++++++.+..
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~   86 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ   86 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667778888888888888888888888888888888888888887776544

>PF14282 FlxA: FlxA-like protein

Probab=92.47  E-value=1.8  Score=27.79  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         20 EEAKQNVKKRIDYISAELKRHDD----TIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        20 ~ea~~~v~kRlE~I~~Eikr~e~----~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      +.-...|.++|.-+..+|+.+..    -.+....+...++.+|..|+.++++...
T Consensus        18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~   72 (106)
T PF14282_consen   18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS   72 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677788888888888877766    3345566777777777777777776554

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=91.54  E-value=0.34  Score=28.88  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             cchhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231         11 GPILVKQEMEE-AKQNVKKRIDYISAELKRHDDTIATLDT   49 (75)
Q Consensus        11 GpvLvkqd~~e-a~~~v~kRlE~I~~Eikr~e~~i~~~e~   49 (75)
                      |+.++.+|++- ...+++.||..++.||.|++..+..-..
T Consensus        10 ~~~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a   49 (59)
T PF06698_consen   10 SGHEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSA   49 (59)
T ss_pred             CccccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677888765 5789999999999999999987765443

The function of this family is unknown.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=90.63  E-value=1.8  Score=27.12  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             chhhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         12 PILVKQEMEEAKQNVKKR--IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        12 pvLvkqd~~ea~~~v~kR--lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      .=+|..+.+....++.+|  ....-.+|-.++.....+..+.+.++.+-..+..++.+...
T Consensus         4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~   64 (108)
T PF02403_consen    4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK   64 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            346788999999999999  56777888888888888888888888888888887776554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=90.59  E-value=1.4  Score=27.78  Aligned_cols=45  Identities=20%  Similarity=0.481  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      .++++=++|+..-++.++.++.++++....++.++..+...+++.
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456677889888888888888888888888888888888887764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=90.56  E-value=1.8  Score=27.78  Aligned_cols=43  Identities=14%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      .++++-++|+..-++.++..++.+++....+++++..++..++
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6889999996666666666666666666666666666665554

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.53  E-value=3.5  Score=29.57  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      .++-+..+..+++-...|+..++...+.+++.....+.++..|++++.....
T Consensus        47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~   98 (251)
T PF11932_consen   47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE   98 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777888888888888888888888888888888888877765543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=89.81  E-value=2.1  Score=26.13  Aligned_cols=41  Identities=12%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      +=++.|+..++.++..++.++++.+.+.+++.+++..+...
T Consensus        62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888899999999999999999998888887654

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=89.57  E-value=0.99  Score=25.82  Aligned_cols=33  Identities=30%  Similarity=0.481  Sum_probs=11.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK   50 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q   50 (75)
                      |..||+.=+.+-.+.|+.=|.-++.+|++++++
T Consensus         2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~K   34 (46)
T PF08946_consen    2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAK   34 (46)
T ss_dssp             -------------THHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence            566777766666666555555566666555554

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=89.55  E-value=2.3  Score=25.14  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231         37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA   75 (75)
Q Consensus        37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~   75 (75)
                      |.+|...+.+|..+...+...+..++..++.+...+.||
T Consensus         5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA   43 (56)
T PF04728_consen    5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA   43 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444666666666666666666666666666665555553

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>KOG1760|consensus

Probab=89.42  E-value=2  Score=29.35  Aligned_cols=51  Identities=6%  Similarity=0.368  Sum_probs=34.5

Q ss_pred             hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231          5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR   55 (75)
Q Consensus         5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~   55 (75)
                      -|==.||.|.+.-..+....-+++-.+...++|..++....+....+..++
T Consensus        65 ~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK  115 (131)
T KOG1760|consen   65 DIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELK  115 (131)
T ss_pred             ccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344468999999999999999999999944444444444444444444433

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=89.04  E-value=3.3  Score=24.64  Aligned_cols=51  Identities=12%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      .++-...++-|+-|...-|..+...+...++++.+++..+..|..++..+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466778889999997777777777777777777777777777777666654

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=88.15  E-value=1.7  Score=29.44  Aligned_cols=36  Identities=17%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231         27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      +++++|++..++.++.-+.....+.+.+.+.+..|-
T Consensus        86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358888888888899999999988888888888876

>COG5293 Predicted ATPase [General function prediction only]

Probab=88.07  E-value=3  Score=34.24  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             hhHHhhc---chhhhccHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231          5 EVYKLIG---PILVKQEMEEAKQ----NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus         5 ~VYKlvG---pvLvkqd~~ea~~----~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      ++|--||   |=+|++|.+++..    -++.|.+|...||.+++.-++.+......+-++.++.-
T Consensus       305 ~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l  369 (591)
T COG5293         305 VLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGL  369 (591)
T ss_pred             HHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777   6689999999864    68999999999999999999999988888877776654

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=87.98  E-value=3.7  Score=26.33  Aligned_cols=42  Identities=21%  Similarity=0.397  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231         25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM   73 (75)
Q Consensus        25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~   73 (75)
                      ++++=++|       ++.+++.+++..+.+.+.+..++.++.......+
T Consensus        84 ~~~eA~~~-------l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~  125 (129)
T cd00584          84 DLEEAIEF-------LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ  125 (129)
T ss_pred             cHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667       9999999999999999999999999888776543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=87.85  E-value=2.6  Score=28.22  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=30.7

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231         15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      +..++++-.+.++.|+..       |+.+.+.++++.+.++..|.++.
T Consensus        71 ~~~eL~er~E~Le~ri~t-------LekQe~~l~e~l~eLq~~i~~~l  111 (119)
T COG1382          71 AVDELEERKETLELRIKT-------LEKQEEKLQERLEELQSEIQKAL  111 (119)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            345788889999999999       67777777777777777666554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.81  E-value=6.7  Score=28.11  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      ++++..+.+.|..-+...+...+..+.+++.+-..+++++..++++...
T Consensus       109 l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884        109 LNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555555566666666666666666666665544

>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family []

Probab=86.68  E-value=1.2  Score=22.00  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHH
Q psy14231         36 ELKRHDDTIATLDTKQDTHR   55 (75)
Q Consensus        36 Eikr~e~~i~~~e~q~e~~~   55 (75)
                      |+.++..+|.++++++..++
T Consensus         2 E~~rlr~rI~dLer~L~~C~   21 (23)
T PF04508_consen    2 EMNRLRNRISDLERQLSECR   21 (23)
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            78889999999999988765

; GO: 0016032 viral reproduction

>PRK08032 fliD flagellar capping protein; Reviewed

Probab=86.10  E-value=5.9  Score=31.13  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      .+..++..|..+|++++.++...++...+.-..++.+-++++
T Consensus       410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mn  451 (462)
T PRK08032        410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLN  451 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555544444433333334444444

>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []

Probab=86.08  E-value=5.3  Score=28.41  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLT   59 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~   59 (75)
                      +..|...+.+++++++.+|.+++.+++..+.++.
T Consensus       191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~  224 (239)
T PF07195_consen  191 ITSRIDSLNSQIKSLDKQIEDLEERLESKEERLR  224 (239)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544444433

This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=86.01  E-value=5.3  Score=23.72  Aligned_cols=43  Identities=9%  Similarity=0.208  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF   65 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~   65 (75)
                      ...++.|++.+...+..+|.+....+.+...+..+|.++....
T Consensus         8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~   50 (71)
T PF10779_consen    8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT   50 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555566666666666666666666665543

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=85.85  E-value=7.8  Score=25.46  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      ...-+++|-++|.+.+...+......+......+..+.+...+..+...
T Consensus        29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~   77 (156)
T PRK05759         29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE   77 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999888888888888877776654

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=85.75  E-value=5.5  Score=23.65  Aligned_cols=46  Identities=20%  Similarity=0.554  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      ..+.+|+.-|+..++..+.++..++.........+..+..++...-
T Consensus         2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~   47 (71)
T PF10779_consen    2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK   47 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888888888888888888888888888888888877776543

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=85.44  E-value=7.7  Score=25.07  Aligned_cols=58  Identities=19%  Similarity=0.298  Sum_probs=45.9

Q ss_pred             hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus         9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      +++-+|.+.    ....+++|-+.|.+.+...+......+.........+.+.+.+......
T Consensus        21 ll~~~l~~p----i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~   78 (140)
T PRK07353         21 ILNALFYKP----VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA   78 (140)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445554    6788999999999999999999888888888888888888877665554

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=85.24  E-value=8.5  Score=26.26  Aligned_cols=49  Identities=18%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ..-+++|-+.|.+.+...+....+.+......+..+.+...+.++....
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~   96 (167)
T PRK08475         48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVET   96 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999888888888888777766553

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.23  E-value=8.6  Score=25.40  Aligned_cols=65  Identities=12%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             hhhHHhhcchhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          4 GEVYKLIGPILVKQEM-EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus         4 a~VYKlvGpvLvkqd~-~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      ..|...|-.+|...+. -+...++..++--+.+++.++...+..++.+.+.+..++...+.....+
T Consensus        34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l   99 (151)
T PF11559_consen   34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL   99 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555443 3566778888888888888877777777777777777776666555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=85.09  E-value=6.7  Score=30.16  Aligned_cols=50  Identities=8%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHH
Q psy14231         13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDT----------IATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~----------i~~~e~q~e~~~~~l~~lQ   62 (75)
                      ++..-|.++...++.++++-++.+|..++..          +++++.|.+...+++.+++
T Consensus       234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~  293 (406)
T PF02388_consen  234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE  293 (406)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999999888875          4444444444444444444

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=84.98  E-value=9.4  Score=25.65  Aligned_cols=52  Identities=13%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      -..+..++..+..||+-...-+..+....+.+.++...++..+..+...+..
T Consensus        56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~  107 (126)
T PF07889_consen   56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS  107 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3445666666666766655555555555555555555566555555554443

The region featured in this family is approximately 100 amino acids long.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.97  E-value=1.9  Score=32.42  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             hhHHhhcchhhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231          5 EVYKLIGPILVKQEME-EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK   72 (75)
Q Consensus         5 ~VYKlvGpvLvkqd~~-ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~   72 (75)
                      .||+-|.|.--+-... ........++.-+..++..++..+..++.+.+....+...|+.++.......
T Consensus       211 ~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl  279 (344)
T PF12777_consen  211 EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL  279 (344)
T ss_dssp             HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5677777743322211 1123455666777778888888888888888777777777777666554433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []

Probab=84.84  E-value=4.4  Score=28.84  Aligned_cols=43  Identities=5%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231         20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      .....++..++..|...|++++.++...+.+....-..++.+-
T Consensus       192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i  234 (239)
T PF07195_consen  192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLI  234 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888888888888887666555554444444333

This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=84.75  E-value=10  Score=25.76  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ....+++|-++|.+.|...+......+......+.+|.+...+.+.....
T Consensus        44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~   93 (174)
T PRK07352         44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD   93 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999998888888888888888888777766543

>PHA01750 hypothetical protein

Probab=84.53  E-value=4.6  Score=25.00  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             hhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231         15 VKQEMEEAKQN-VKKRIDYISAELKRHDDTIATLDTKQDTHRENLT   59 (75)
Q Consensus        15 vkqd~~ea~~~-v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~   59 (75)
                      +||.+-+|..+ |++-++....||..+..++..+++|...++.++.
T Consensus        28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d   73 (75)
T PHA01750         28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD   73 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            67777666654 4556666666666666666666666555555543

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=84.51  E-value=10  Score=28.41  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      -..+|..++..+++-.+..+..+..--+.++.++++.+.+|+..|+-++..++
T Consensus       166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~  218 (267)
T PF10234_consen  166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS  218 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566666666666666666666677777777777777777776665544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK14011 prefoldin subunit alpha; Provisional

Probab=84.48  E-value=8.9  Score=26.11  Aligned_cols=48  Identities=17%  Similarity=0.305  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      ..++++=++|++.-++-++.....+...++++...+..++..++..+.
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~  130 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ  130 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778889988888888888888888888888888888866554433

>KOG1655|consensus

Probab=84.32  E-value=2.3  Score=31.20  Aligned_cols=39  Identities=15%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231         16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH   54 (75)
Q Consensus        16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~   54 (75)
                      +.++.+|...|++|-+.|+.=|++++..+..+..|+.+.
T Consensus        14 ~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~   52 (218)
T KOG1655|consen   14 PPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT   52 (218)
T ss_pred             ChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            568899999999999997777777777777766666543

>PF14282 FlxA: FlxA-like protein

Probab=84.31  E-value=6.8  Score=25.08  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDT----KQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~----q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      .+.+++-|...|+.+...|+.+..    -.+..+.++..||.+++...+.
T Consensus        17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQ   66 (106)
T PF14282_consen   17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQ   66 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666665    2245566666666666655544

>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage

Probab=84.28  E-value=5.5  Score=27.17  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT   59 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~   59 (75)
                      ..|++-.++.|..|++|+..+.+..+++.+.++.-|.
T Consensus        49 Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~   85 (162)
T PF05565_consen   49 IKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL   85 (162)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677777777777777777777777766654

It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].

>PRK08032 fliD flagellar capping protein; Reviewed

Probab=83.92  E-value=5.9  Score=31.14  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT----KLQQQFQQEQA   70 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~----~lQ~~~q~~~~   70 (75)
                      --+..|.+.+.+.|++++.++..++.+++...+++.    .|..-+.++.+
T Consensus       402 G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns  452 (462)
T PRK08032        402 GIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNS  452 (462)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778899999999999999988777766555544    44444444433

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=83.84  E-value=13  Score=26.34  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ...-+++|-++|.+.+...+......+......+.++.+...+.++....
T Consensus        73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~  122 (205)
T PRK06231         73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ  122 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999988888888888888888877776665543

>PRK09039 hypothetical protein; Validated

Probab=83.43  E-value=9.9  Score=28.91  Aligned_cols=48  Identities=8%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      .-++..|+-++..|.+++..|...+.+....+.+|..|+..++.+++.
T Consensus       140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666677777777777777777788888888888777654

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=83.40  E-value=7.3  Score=23.16  Aligned_cols=48  Identities=8%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      -|+..|.+.+.-..+.-..++.++++.+.+...+..++..|..++.+.
T Consensus        11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~   58 (61)
T PF08826_consen   11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            366677777776666666677777777777777777777777766554

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=83.21  E-value=14  Score=27.38  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      +.-.....++|+..++.||..+...+..++++.+.++..+..+...+....
T Consensus        94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566778888888888888888888888888888888888887766544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.08  E-value=6.8  Score=31.24  Aligned_cols=42  Identities=14%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      .++|++-|.+||.+++..|....++...+.+.|.++...+..
T Consensus        36 ~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~   77 (420)
T COG4942          36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS   77 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            338888888888888888877777777777777766665543

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=83.00  E-value=12  Score=25.31  Aligned_cols=50  Identities=14%  Similarity=0.037  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ....+++|-+.|.+.|...+..-...+.........|.+...+.+.....
T Consensus        35 i~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~   84 (167)
T PRK14475         35 LAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA   84 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999998888888888877766553

>PRK04406 hypothetical protein; Provisional

Probab=82.92  E-value=8.5  Score=23.52  Aligned_cols=49  Identities=6%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      .++-..+++-|+-|-..=|..+...+...++++..++.++..|-.++..
T Consensus         9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555666777777744444444444444444444444444444444433

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=82.68  E-value=3.7  Score=24.04  Aligned_cols=28  Identities=14%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIA   45 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~   45 (75)
                      |.+.-...+.+.++.+.++|.+++.++.
T Consensus         1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~   28 (66)
T PF10458_consen    1 DVEAEIERLEKELEKLEKEIERLEKKLS   28 (66)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4455566777777777777777777665

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.59  E-value=15  Score=26.19  Aligned_cols=46  Identities=17%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      .++..|.++-...+.+++..+..++..+...+.+...++..+-.++
T Consensus       186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l  231 (237)
T PF00261_consen  186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL  231 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555554444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=82.34  E-value=13  Score=25.41  Aligned_cols=50  Identities=10%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ...-+++|-++|.+.+...+......+......+..+.+...+.+.....
T Consensus        49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~   98 (184)
T CHL00019         49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN   98 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999888888888888888888887777665543

>PF14193 DUF4315: Domain of unknown function (DUF4315)

Probab=82.29  E-value=5.6  Score=24.97  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231         29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      +++-|.+||.+...+|..++.++..+..+..++-
T Consensus         2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E   35 (83)
T PF14193_consen    2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE   35 (83)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777889999999999999988888777766554

>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori

Probab=82.23  E-value=5.7  Score=25.39  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             CCchhhHHhhcchhhhccHHHHHHHHHHHHHHHHH
Q psy14231          1 MKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISA   35 (75)
Q Consensus         1 ~~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~   35 (75)
                      ++|..+++++|.| -+.|.-+...+|.+|+.-++.
T Consensus         6 ~sn~EL~kmaG~v-~~k~~~dy~~Ei~KR~~~m~~   39 (93)
T PF06518_consen    6 KSNEELIKMAGKV-DPKDVPDYKMEIHKRLKKMKE   39 (93)
T ss_dssp             S-HHHHHHTTTTS--GGGHHHHHHHHHHHHHHS-H
T ss_pred             cChHHHHHHHCCC-CHHHHHHHHHHHHHHHHhCCH
Confidence            4678899999999 899999999999999997555

; PDB: 2XRH_A.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=82.15  E-value=9.9  Score=23.75  Aligned_cols=43  Identities=16%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      +++=++|++.-++.++..+..++.+...++.++..++..+++.
T Consensus        75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~  117 (120)
T PF02996_consen   75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL  117 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778555556666666666666665555555555555543

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=82.10  E-value=13  Score=25.19  Aligned_cols=50  Identities=6%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ...-+++|-+.|.+++...+......+......+.++.+.+.+.+.....
T Consensus        41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~   90 (173)
T PRK13460         41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE   90 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999998888888888888888888777766553

>PRK09343 prefoldin subunit beta; Provisional

Probab=82.05  E-value=8.4  Score=25.17  Aligned_cols=42  Identities=14%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231         16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ   64 (75)
Q Consensus        16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~   64 (75)
                      +.+..+-...++.|+.-       ++++...++++...++..|.++.++
T Consensus        73 ~~~l~~r~E~ie~~ik~-------lekq~~~l~~~l~e~q~~l~~ll~~  114 (121)
T PRK09343         73 EKELKERKELLELRSRT-------LEKQEKKLREKLKELQAKINEMLSK  114 (121)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666777777766       7777777777777777777776654

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=81.98  E-value=14  Score=25.30  Aligned_cols=49  Identities=20%  Similarity=0.144  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      ..-+++|-+.|.+.|...+..-...+......+.++.+.+.+.++....
T Consensus        53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~  101 (184)
T PRK13455         53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA  101 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999998888888888888888887777665543

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=81.08  E-value=11  Score=25.91  Aligned_cols=33  Identities=12%  Similarity=0.282  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231         32 YISAELKRHDDTIATLDTKQDTHRENLTKLQQQ   64 (75)
Q Consensus        32 ~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~   64 (75)
                      -.+.||+.++..+++.+...+.++++...++.+
T Consensus       158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e  190 (192)
T PF05529_consen  158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE  190 (192)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555566666666555556666665555543

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=80.91  E-value=6.6  Score=31.81  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      .++++++++-++.|+.-+....++++.+++.+..++..|+.++.
T Consensus        78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~  121 (475)
T PRK13729         78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK  121 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888888887778888889999999999999988873

>PRK02793 phi X174 lysis protein; Provisional

Probab=80.73  E-value=10  Score=22.91  Aligned_cols=49  Identities=12%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      .++-...++-|+-|-..=|..+...+...++++..++.++..|-.++..
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555667777777744444444444444444444444444444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.58  E-value=16  Score=24.99  Aligned_cols=43  Identities=9%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231         25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ   67 (75)
Q Consensus        25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~   67 (75)
                      ++..|++....|+.-.+.....+..+.+..+..+..|+.++..
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~   63 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEE   63 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.54  E-value=14  Score=27.76  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231         23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ   62 (75)
Q Consensus        23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ   62 (75)
                      +.++.+-|+-+-+.|..+-..+.+++++....+..+.+++
T Consensus        47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~   86 (265)
T COG3883          47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ   86 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

>PRK07737 fliD flagellar capping protein; Validated

Probab=80.48  E-value=12  Score=29.83  Aligned_cols=43  Identities=14%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      ..+.+++.-|..+|++++.++...+++..+.-..|+.+-.+++
T Consensus       444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mn  486 (501)
T PRK07737        444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKAN  486 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566667777777777777776665554433333333333333

>PRK04325 hypothetical protein; Provisional

Probab=80.47  E-value=10  Score=22.94  Aligned_cols=52  Identities=21%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      ++.++-..+|+-|+-|-..=|..+...+..-++++..++.++.-|-.++..+
T Consensus         5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677888888888555555555555555555555555555555555443

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.28  E-value=9.9  Score=22.55  Aligned_cols=44  Identities=23%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      ++.||+-++.-+--.+..|..+..-.-..+..|..|+.+++.+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~   45 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR   45 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=80.24  E-value=11  Score=31.79  Aligned_cols=53  Identities=13%  Similarity=0.332  Sum_probs=39.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-------TKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-------~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      |.+.-...+.++++.+.+||++++.++..-.       .-.+..++++.+++.++.....
T Consensus       808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~  867 (874)
T PRK05729        808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKE  867 (874)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778899999999999999999998633       4556666666666666655443

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=80.22  E-value=8.9  Score=24.35  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=14.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      ++.+++.++...+.+.+++..++.++....
T Consensus        72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q  101 (110)
T TIGR02338        72 LKEKKETLELRVKTLQRQEERLREQLKELQ  101 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.53
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.5
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	98.45
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	98.42
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	94.87
2pnv_A	43	Small conductance calcium-activated potassium chan	93.91
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	93.81
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	92.35
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	90.3
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.81
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	89.49
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	89.3
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	86.43
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	86.3
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	86.22
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	86.01
3htk_A	60	Structural maintenance of chromosomes protein 5; S	85.63
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.59
1k1f_A	72	Breakpoint cluster region protein; oligomerization	84.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.26
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.58
2yko_A	233	LINE-1 ORF1P; RNA-binding protein, genome evolutio	81.52

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.53  E-value=5.9e-15  Score=92.40  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=45.7

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL   58 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l   58 (75)
                      +|++||++||||||++|.++|..+|++|+++|+.+|++++..+..+++++..++..|
T Consensus        46 ~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l  102 (107)
T 1fxk_A           46 DDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999999977666666666666655555555444

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.50  E-value=2.3e-14  Score=90.76  Aligned_cols=60  Identities=22%  Similarity=0.390  Sum_probs=46.3

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL   61 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l   61 (75)
                      +|++||++||||||++|.++|..+|++|+++|..+|++++..+..++++...++..|.++
T Consensus        51 ~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           51 DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999999966666666666655555555555444443

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=98.45  E-value=1.1e-07  Score=62.96  Aligned_cols=63  Identities=17%  Similarity=0.290  Sum_probs=52.1

Q ss_pred             hhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231          4 GEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus         4 a~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      ++||=.+| +++|..+.+||...+++|+++++..+++++..+..+..+...+...+.++++.++
T Consensus        80 ~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~  143 (151)
T 2zdi_C           80 NNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS  143 (151)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred             CEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555577 8999999999999999999998888888888888888888888888877776544

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=98.42  E-value=4.4e-07  Score=58.55  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             chhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231          3 DGEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK   72 (75)
Q Consensus         3 da~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~   72 (75)
                      .++||-.+| +++|..+.++|..-+++|+++       ++.+++.+++++..+++++..++..+++++++.
T Consensus        69 ~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~-------l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~  132 (133)
T 1fxk_C           69 TSEVIMSVGAGVAIKKNFEDAMESIKSQKNE-------LESTLQKMGENLRAITDIMMKLSPQAEELLAAV  132 (133)
T ss_dssp             TTEEEEEEETTEEEEEEHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCEEEEeeHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            356999999 699999999999999999999       777788888888888888888888888777654

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=94.87  E-value=0.075  Score=32.63  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK   72 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~   72 (75)
                      +++=++.++..++.++..+++++++.+.+++++.+++.++++.+++.
T Consensus        68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~  114 (117)
T 2zqm_A           68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP  114 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            44556778889999999999999999999999999999999988653

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=93.91  E-value=0.11  Score=28.49  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231         21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT   59 (75)
Q Consensus        21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~   59 (75)
                      |..+++..|-|-       +|+||..++.+++.+...|.
T Consensus         9 dlvsel~~r~e~-------LE~Ri~~LE~KLd~L~~~l~   40 (43)
T 2pnv_A            9 DMISDLNERSED-------FEKRIVTLETKLETLIGSIH   40 (43)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            566888888888       88888888888777776665

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=93.81  E-value=0.46  Score=29.20  Aligned_cols=54  Identities=11%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231         21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR   74 (75)
Q Consensus        21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~   74 (75)
                      -|++.|.+.+.-+++.....+.++++.+.+-..+..++..+..++......+.+
T Consensus        24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~~~   77 (81)
T 1wt6_A           24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEGAT   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence            477888888998998888889999999999999988888888888876554443

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=92.35  E-value=0.2  Score=30.22  Aligned_cols=43  Identities=12%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      +++=++.++..++.++..|++++++.+.+++++.+++.++++.
T Consensus        63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~  105 (107)
T 1fxk_A           63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566778889999999999999999999999999988764

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=90.30  E-value=2.3  Score=28.67  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHH
Q psy14231          6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK-------QDTHRENLTKLQQQFQ   66 (75)
Q Consensus         6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q-------~e~~~~~l~~lQ~~~q   66 (75)
                      +.++.||=+|.++..+     ...+.-+++|+..++.++.+++..       .+.+++++..||-++.
T Consensus        51 ~~~~~~~~~vs~~~~~-----~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n  113 (152)
T 3a7p_A           51 NSGAIGGNIVSHDDAL-----LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN  113 (152)
T ss_dssp             ------CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCcccccchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788788888544     346777777888788887777744       4455555555554443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.81  E-value=2.5  Score=27.60  Aligned_cols=50  Identities=10%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      -++++-++-..++++...+||+.+.-.+++...+.++++.....++..+.
T Consensus        60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            34444445557789999999999999999999999999998887776554

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=89.49  E-value=0.33  Score=30.31  Aligned_cols=50  Identities=16%  Similarity=0.385  Sum_probs=36.9

Q ss_pred             chhhHHhhcchhhhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231          3 DGEVYKLIGPILVKQEMEEAKQNVKK-RIDYISAELKRHDDTIATLDTKQDT   53 (75)
Q Consensus         3 da~VYKlvGpvLvkqd~~ea~~~v~k-RlE~I~~Eikr~e~~i~~~e~q~e~   53 (75)
                      +..+|.....+||.-++|||...++. |+-| ..||+++..+-+.+-.++.+
T Consensus        43 er~~yraf~dllveitkdeaiehier~rl~y-kreie~l~~~ekeime~ls~   93 (99)
T 3aei_A           43 ERRIYRAFSDLLVEITKDEAIEHIERSRLVY-KREIEKLKKREKEIMEELSK   93 (99)
T ss_dssp             CCCEEEEETTEEEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999875 5555 67777776665554444433

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=89.30  E-value=1.2  Score=28.69  Aligned_cols=50  Identities=14%  Similarity=0.284  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM   73 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~   73 (75)
                      .++++=++|++.=++.++..++.+++.+..+++++..++..+++.++..+
T Consensus        94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~  143 (151)
T 2zdi_C           94 RSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS  143 (151)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677789999999999999999999999999999999999998887543

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=86.43  E-value=1.4  Score=23.97  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRE   56 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~   56 (75)
                      +=..++-|..||.+.+.+|..+++++..+.+
T Consensus         7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee   37 (42)
T 2l5g_B            7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE   37 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556677777777777777666655543

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=86.30  E-value=3.1  Score=24.83  Aligned_cols=48  Identities=21%  Similarity=0.436  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA   70 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~   70 (75)
                      ..+.+..+.+|.+    ||...+.+|.++++.+......+.+||.++-...+
T Consensus        21 i~eLq~~L~~K~e----ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS   68 (72)
T 3nmd_A           21 LRDLQYALQEKIE----ELRQRDALIDELELELDQKDELIQMLQNELDKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555666666655    46667888888888888888888888887765443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=86.22  E-value=3.7  Score=24.40  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231         17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF   65 (75)
Q Consensus        17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~   65 (75)
                      .++++-...++-|+-|-..=|..+...+..-++++.+++.++.-|-.++
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl   58 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL   58 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677788888888444444444444444444444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=86.01  E-value=3.2  Score=33.07  Aligned_cols=45  Identities=11%  Similarity=0.291  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      .+|++|+.||+-+|...-.+|+.|+.-++.++.+|.+|...+.-.
T Consensus       113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq  157 (562)
T 3ghg_A          113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK  157 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999888999999999999999988887665543

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=85.63  E-value=3  Score=22.82  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ   66 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q   66 (75)
                      +++-....+.+...+.+++......+..+.+.++..++.+.+++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555677788888888888888888888888888888877654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.59  E-value=5.1  Score=27.76  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231         19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF   65 (75)
Q Consensus        19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~   65 (75)
                      +.+....+..+++-+..+++.++..++.++......+.++.+.+.++
T Consensus        37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555444

>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1

Probab=84.59  E-value=3.4  Score=24.66  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231         30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF   65 (75)
Q Consensus        30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~   65 (75)
                      +..|+.|+.+|...|..++.+.++.+=.+.=||.=+
T Consensus        28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlL   63 (72)
T 1k1f_A           28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            567899999999999999999999998888887644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.26  E-value=7  Score=29.16  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      .|+.+++.+++...++...++.++..+-+++++.
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444443344333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=82.54  E-value=5.5  Score=23.36  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE   68 (75)
Q Consensus        27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~   68 (75)
                      ++|.+-...||..+..++..++...++..+.+...+.++..+
T Consensus        33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A           33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666667777777777777777777777777777666543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.26  E-value=7.3  Score=26.94  Aligned_cols=48  Identities=10%  Similarity=0.082  Sum_probs=22.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231         17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ   64 (75)
Q Consensus        17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~   64 (75)
                      |+.|.-...+..++.-+-.||..++..+..+.......+..+..+..+
T Consensus        14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~   61 (256)
T 3na7_A           14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ   61 (256)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444555554444444444444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.58  E-value=11  Score=28.11  Aligned_cols=47  Identities=9%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231         17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ   63 (75)
Q Consensus        17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~   63 (75)
                      +...+....+..|...+..++.+.+..++...++.+.++.+..++..
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  551 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK  551 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence            44556666667777776666666666664444444444444443333

>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A

Probab=81.52  E-value=4.9  Score=28.69  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL   58 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l   58 (75)
                      |.+|-.+++++|++-|+......+++++.++..+.++.+.+
T Consensus        10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i   50 (233)
T 2yko_A           10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV   50 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45677778888888877777777777777776666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1fxka_	107	a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Meth	0.001

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 107

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 32.4 bits (74), Expect = 0.001
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 2   KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
            D EVYK  G IL++   +E  + ++++++ +    K  +     +  K    + N+ + 
Sbjct: 46  DDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105

Query: 62  QQ 63
            +
Sbjct: 106 MK 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.64
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.13
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	92.16
d1ivsa1	66	Valyl-tRNA synthetase (ValRS) C-terminal domain {T	86.56
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	85.76
d1k1fa_	67	Bcr-Abl oncoprotein oligomerization domain {Human	83.82

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=4.8e-17  Score=102.21  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=53.0

Q ss_pred             CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231          2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL   61 (75)
Q Consensus         2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l   61 (75)
                      +|++|||+||||||++|.+++..+|++|+|||+.+|++++.+++.++++.+.+++++.++
T Consensus        46 ~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          46 DDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999988888888888888887777777776643

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.13  E-value=0.00094  Score=40.99  Aligned_cols=59  Identities=20%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             hHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231          6 VYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA   71 (75)
Q Consensus         6 VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~   71 (75)
                      |+=.+| .+.|..+.++|..-+++|++.       ++..+..+..+...++..+..++..+++.+++
T Consensus        72 vlV~lG~g~~vE~~~~eA~~~l~~ri~~-------l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a  131 (133)
T d1fxkc_          72 VIMSVGAGVAIKKNFEDAMESIKSQKNE-------LESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCeeeeecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333344 478899999999999999999       55555555666666666666666666665554

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.16  E-value=0.13  Score=30.26  Aligned_cols=44  Identities=11%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ   69 (75)
Q Consensus        26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~   69 (75)
                      +++=+..++..++-++..++.+++++..+.+++.+++.+++.++
T Consensus        63 ~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~~  106 (107)
T d1fxka_          63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445567788899999999999999999999999999988653

>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Valyl-tRNA synthetase (ValRS) C-terminal domain
domain: Valyl-tRNA synthetase (ValRS) C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.56  E-value=0.58  Score=25.20  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231         18 EMEEAKQNVKKRIDYISAELKRHDDTIA   45 (75)
Q Consensus        18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~   45 (75)
                      |.+.=+..+.+.++.+.++|.+++.++.
T Consensus         1 D~~~E~~RL~K~l~kl~~~i~~~~~kL~   28 (66)
T d1ivsa1           1 DVEEWRRRQEKRLKELLALAERSQRKLA   28 (66)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4455567788888888888888877775

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.76  E-value=1.2  Score=26.33  Aligned_cols=42  Identities=12%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231         25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM   73 (75)
Q Consensus        25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~   73 (75)
                      ++++=++|       ++.+++.+++..+.+.+.+.+++.++.+..+...
T Consensus        85 ~~~eA~~~-------l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~  126 (133)
T d1fxkc_          85 NFEDAMES-------IKSQKNELESTLQKMGENLRAITDIMMKLSPQAE  126 (133)
T ss_dssp             EHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677       8899999999999999999999988887766543

>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bcr-Abl oncoprotein oligomerization domain
superfamily: Bcr-Abl oncoprotein oligomerization domain
family: Bcr-Abl oncoprotein oligomerization domain
domain: Bcr-Abl oncoprotein oligomerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=1.7  Score=24.22  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231         31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF   65 (75)
Q Consensus        31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~   65 (75)
                      .-|+.|+.||...|+.++....+-+=++.=||+-+
T Consensus        29 ~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~L   63 (67)
T d1k1fa_          29 GDIEQELERAKASIRRLEQEVNQERFRMIYLQTLL   63 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788899999999999999888888887777544