Psyllid ID: psy14235

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
ccHHHHHHHHHHHHHHcccHHHcccccccccHHHHHHHHcccccHHHHHHHHHHccccEEEEEEcccccccccccccEEEcEEEccccccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHcccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHcccccccccccccHHHHHHHHcccccccEEHHHcccHHHHHHHHHHHHHHccccccccccccccHHHcccccccccccHHHHHHHHHHEEcccccccccccHHHHHHHHHHccccccccccccccccEEEEEEcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccEEEEEEccEEEEEEEEcccccEEEcccccccccccccccccHHHHHcccc
cHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccEEEcccEEEccccEHHHHHHHccEccccccEcHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccEEEccHEHHHHHHccccccccccccccccEEEEEEccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccEEEEEcccEEEEEEEEccccEEEEEccHccccccEEEccHHHHHHHHccc
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKnygstkvgeVTVDMMYggmrgikglvcetsvldpeegirfrglsipecqkvlpkakggeeplpeGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLnnfpnhlhpmsQFSAAITALNSESKFAKayndgvhkskYWEYVYEDSMDLIAKLPVVAATIYRntfqggkgigaidtnkdwsanftsmlgfdnhqFTELMRLYLTIhsdheggnvsAHTVHLVGsalsdpylsfaagmnglagplhglaNQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLksgqvvpgyghavlrktdprytcqrefaqkhlpddslFKLVSQVYKvvppvlietgkvknpwpnvdahsGVLLQYyglkemnyYTVLFGVSRALGVLASLIWDRalglpierpkslstnDLVKQYSKTQIISLTMIEYYLCAFYIKyglpegafhLSTRYCYHLMrfenrpiweepynqkggtwrikcSKRFSICISLthslgqitptpkpqsglsVYVVLTLFVMMLRAwqiaptpkpqsglfvtrkslhpdmrlskqGVVYFVGNNMIFTVQVRRHQSqicishsllftphavkcctfanifcawskk
malvrisarsvadlHQISNFLRTFATDASTDLKAVLaakipseqervknfrknygstkvgevTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTlksgqvvpgyghaVLRKTDPRYTCQREFAqkhlpddslFKLVSQVYKVVPPVLIetgkvknpwpnvdAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLpierpkslstndlVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSlgqitptpkpqsGLSVYVVLTLFVMMLRAWQIaptpkpqsgLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
*******ARSVADLHQISNFLRTFATDASTDLKAVLAAKIP*****VKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPK******PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAW***
******************************DLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSK*
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
****RI**********ISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQGVVYFVGNNMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFANIFCAWSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query645 2.2.26 [Sep-21-2011]
Q16P20467 Probable citrate synthase N/A N/A 0.706 0.976 0.816 0.0
Q17GM7467 Probable citrate synthase N/A N/A 0.706 0.976 0.816 0.0
Q9W401464 Probable citrate synthase yes N/A 0.714 0.993 0.782 0.0
Q0QHL3465 Probable citrate synthase N/A N/A 0.716 0.993 0.787 0.0
Q6S9V7469 Citrate synthase, mitocho N/A N/A 0.671 0.923 0.766 0.0
Q6S9V8469 Citrate synthase, mitocho N/A N/A 0.671 0.923 0.769 0.0
Q6S9V9469 Citrate synthase, mitocho N/A N/A 0.671 0.923 0.769 0.0
P0C1Z2466 Citrate synthase, mitocho N/A N/A 0.672 0.931 0.769 0.0
Q6S9V5469 Citrate synthase, mitocho N/A N/A 0.671 0.923 0.766 0.0
O75390466 Citrate synthase, mitocho yes N/A 0.672 0.931 0.771 0.0
>sp|Q16P20|CISY2_AEDAE Probable citrate synthase 2, mitochondrial OS=Aedes aegypti GN=AAEL011789 PE=3 SV=1 Back     alignment and function desciption
 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/463 (81%), Positives = 421/463 (90%), Gaps = 7/463 (1%)

Query: 1   MALVRISARSVADLHQ-----ISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYG 55
           MAL RI +  +A  ++     I+ ++R  A+D STDLKAVL+ KIP EQERVKNFRK +G
Sbjct: 1   MALSRIYSSKLASANKNLLPVITTYVRN-ASD-STDLKAVLSEKIPKEQERVKNFRKQFG 58

Query: 56  STKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLP 115
           +TKVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQKVLPKA GG EPLP
Sbjct: 59  ATKVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKVLPKAPGGAEPLP 118

Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
           EGLFWLL+TGDVP++AQV ALS+ WA+RA LPSHVVTMLNN P  LHPMSQ S A+TALN
Sbjct: 119 EGLFWLLITGDVPTKAQVDALSREWANRAALPSHVVTMLNNMPTTLHPMSQLSCAVTALN 178

Query: 176 SESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDW 235
            ESK+AKAY++GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNT++ GKGIGAID  KDW
Sbjct: 179 HESKYAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTYRDGKGIGAIDPKKDW 238

Query: 236 SANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 295
           SANFT MLG+++ QFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL
Sbjct: 239 SANFTKMLGYEDEQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 298

Query: 296 AGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPR 355
           AGPLHGLANQEVL+WL+KL++++GDN SE+K+K+FIW TLKSGQVVPGYGHAVLRKTDPR
Sbjct: 299 AGPLHGLANQEVLVWLQKLRKELGDNASEDKVKDFIWKTLKSGQVVPGYGHAVLRKTDPR 358

Query: 356 YTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKE 415
           YTCQREFA KHLP+D LF+LVS +YKVVPP+L E GKVKNPWPNVDAHSGVLLQYYGLKE
Sbjct: 359 YTCQREFALKHLPNDPLFQLVSNIYKVVPPILTELGKVKNPWPNVDAHSGVLLQYYGLKE 418

Query: 416 MNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458
           MNYYTVLFGVSRALGVLASL+WDRALGLPIERPKS+ST+ L+K
Sbjct: 419 MNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSMSTDGLMK 461

Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|Q17GM7|CISY1_AEDAE Probable citrate synthase 1, mitochondrial OS=Aedes aegypti GN=AAEL002956 PE=3 SV=1 Back     alignment and function description
>sp|Q9W401|CISY_DROME Probable citrate synthase, mitochondrial OS=Drosophila melanogaster GN=kdn PE=2 SV=1 Back     alignment and function description
>sp|Q0QHL3|CISY_GLOMM Probable citrate synthase, mitochondrial OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V7|CISY_KATPE Citrate synthase, mitochondrial OS=Katsuwonus pelamis GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V8|CISY_THUOB Citrate synthase, mitochondrial OS=Thunnus obesus GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V9|CISY_THUAL Citrate synthase, mitochondrial OS=Thunnus albacares GN=cs PE=2 SV=1 Back     alignment and function description
>sp|P0C1Z2|CISY_MACFA Citrate synthase, mitochondrial OS=Macaca fascicularis GN=CS PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V5|CISY_TETAD Citrate synthase, mitochondrial OS=Tetrapturus audax GN=cs PE=2 SV=1 Back     alignment and function description
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial OS=Homo sapiens GN=CS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
91083623466 PREDICTED: similar to citrate synthase [ 0.708 0.980 0.833 0.0
158300600466 AGAP012048-PA [Anopheles gambiae str. PE 0.713 0.987 0.818 0.0
312382838708 hypothetical protein AND_04269 [Anophele 0.688 0.627 0.836 0.0
157130536467 citrate synthase [Aedes aegypti] gi|1571 0.706 0.976 0.816 0.0
157133341467 citrate synthase [Aedes aegypti] gi|1220 0.706 0.976 0.816 0.0
357612136465 putative citrate synthase [Danaus plexip 0.714 0.991 0.800 0.0
350425352463 PREDICTED: probable citrate synthase 2, 0.708 0.987 0.815 0.0
332373860465 unknown [Dendroctonus ponderosae] 0.708 0.982 0.807 0.0
195439386464 GK16526 [Drosophila willistoni] gi|19416 0.714 0.993 0.791 0.0
242016143451 citrate synthase, putative [Pediculus hu 0.674 0.964 0.841 0.0
>gi|91083623|ref|XP_970124.1| PREDICTED: similar to citrate synthase [Tribolium castaneum] gi|270006831|gb|EFA03279.1| hypothetical protein TcasGA2_TC013214 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/462 (83%), Positives = 423/462 (91%), Gaps = 5/462 (1%)

Query: 1   MALVRISARSVAD----LHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGS 56
           MAL R +A  +A+    + QIS  LR   +DASTDLKAVLAAKIP EQERVKNFRKNYG+
Sbjct: 1   MALFRFTATKLAESQKIVPQISVVLRQL-SDASTDLKAVLAAKIPKEQERVKNFRKNYGN 59

Query: 57  TKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPE 116
            KVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQK+LPKA GG EPLPE
Sbjct: 60  QKVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKLLPKAPGGSEPLPE 119

Query: 117 GLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176
           GLFWLL+TGDVP+EAQV+A+SK WA RAELPSHVVT+LNN P ++HPMSQ SAAIT LNS
Sbjct: 120 GLFWLLITGDVPTEAQVRAISKEWAERAELPSHVVTLLNNLPTNVHPMSQLSAAITVLNS 179

Query: 177 ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWS 236
           ESKFAKAY+ GVHKSKYWEYVYEDSMDLIAKLPV+AATIYRNTF+ G GIGAIDT+KDWS
Sbjct: 180 ESKFAKAYSSGVHKSKYWEYVYEDSMDLIAKLPVIAATIYRNTFKDGSGIGAIDTSKDWS 239

Query: 237 ANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLA 296
            NFT MLG+DN +F ELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLA
Sbjct: 240 YNFTQMLGYDNPEFVELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLA 299

Query: 297 GPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRY 356
           GPLHGLANQEVL+WL+K++QQ+GD  +EE+LK+FIW TLKSGQVVPGYGHAVLRKTDPRY
Sbjct: 300 GPLHGLANQEVLLWLQKIRQQIGDKATEEQLKDFIWKTLKSGQVVPGYGHAVLRKTDPRY 359

Query: 357 TCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEM 416
           TCQREFA KHLP+D LF+LVS ++KVVPP+L+E GKVKNPWPNVDAHSGVLLQYYGLKEM
Sbjct: 360 TCQREFALKHLPNDPLFQLVSNIFKVVPPILLELGKVKNPWPNVDAHSGVLLQYYGLKEM 419

Query: 417 NYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458
           NYYTVLFGVSRALGVLASL+WDRALGLPIERPKSLST+ L+K
Sbjct: 420 NYYTVLFGVSRALGVLASLVWDRALGLPIERPKSLSTDGLMK 461

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158300600|ref|XP_320478.4| AGAP012048-PA [Anopheles gambiae str. PEST] gi|157013238|gb|EAA00454.5| AGAP012048-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312382838|gb|EFR28146.1| hypothetical protein AND_04269 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157130536|ref|XP_001655738.1| citrate synthase [Aedes aegypti] gi|157130538|ref|XP_001655739.1| citrate synthase [Aedes aegypti] gi|122067459|sp|Q16P20.1|CISY2_AEDAE RecName: Full=Probable citrate synthase 2, mitochondrial; Flags: Precursor gi|108871873|gb|EAT36098.1| AAEL011789-PB [Aedes aegypti] gi|108871874|gb|EAT36099.1| AAEL011789-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157133341|ref|XP_001656210.1| citrate synthase [Aedes aegypti] gi|122095223|sp|Q17GM7.1|CISY1_AEDAE RecName: Full=Probable citrate synthase 1, mitochondrial; Flags: Precursor gi|108881547|gb|EAT45772.1| AAEL002956-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|357612136|gb|EHJ67827.1| putative citrate synthase [Danaus plexippus] Back     alignment and taxonomy information
>gi|350425352|ref|XP_003494094.1| PREDICTED: probable citrate synthase 2, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332373860|gb|AEE62071.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|195439386|ref|XP_002067612.1| GK16526 [Drosophila willistoni] gi|194163697|gb|EDW78598.1| GK16526 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|242016143|ref|XP_002428695.1| citrate synthase, putative [Pediculus humanus corporis] gi|212513366|gb|EEB15957.1| citrate synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
UNIPROTKB|Q16P20467 AAEL011789 "Probable citrate s 0.710 0.980 0.815 6.7e-207
UNIPROTKB|Q17GM7467 AAEL002956 "Probable citrate s 0.710 0.980 0.815 6.7e-207
FB|FBgn0261955464 kdn "knockdown" [Drosophila me 0.714 0.993 0.782 1.5e-200
UNIPROTKB|Q0QHL3465 Q0QHL3 "Probable citrate synth 0.716 0.993 0.787 1.8e-199
UNIPROTKB|O75390466 CS "Citrate synthase, mitochon 0.710 0.982 0.742 1.3e-187
UNIPROTKB|P0C1Z2466 CS "Citrate synthase, mitochon 0.710 0.982 0.740 1.7e-187
UNIPROTKB|Q6S9V8469 cs "Citrate synthase, mitochon 0.671 0.923 0.769 1.7e-187
UNIPROTKB|Q6S9V9469 cs "Citrate synthase, mitochon 0.671 0.923 0.769 1.7e-187
UNIPROTKB|Q6S9V7469 cs "Citrate synthase, mitochon 0.671 0.923 0.766 2.1e-187
UNIPROTKB|Q6S9V5469 cs "Citrate synthase, mitochon 0.671 0.923 0.766 2.7e-187
UNIPROTKB|Q16P20 AAEL011789 "Probable citrate synthase 2, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
 Score = 2001 (709.4 bits), Expect = 6.7e-207, P = 6.7e-207
 Identities = 376/461 (81%), Positives = 419/461 (90%)

Query:     1 MALVRISARSVADLHQ-ISNFLRTFATDAS--TDLKAVLAAKIPSEQERVKNFRKNYGST 57
             MAL RI +  +A  ++ +   + T+  +AS  TDLKAVL+ KIP EQERVKNFRK +G+T
Sbjct:     1 MALSRIYSSKLASANKNLLPVITTYVRNASDSTDLKAVLSEKIPKEQERVKNFRKQFGAT 60

Query:    58 KVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEG 117
             KVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQKVLPKA GG EPLPEG
Sbjct:    61 KVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKVLPKAPGGAEPLPEG 120

Query:   118 LFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177
             LFWLL+TGDVP++AQV ALS+ WA+RA LPSHVVTMLNN P  LHPMSQ S A+TALN E
Sbjct:   121 LFWLLITGDVPTKAQVDALSREWANRAALPSHVVTMLNNMPTTLHPMSQLSCAVTALNHE 180

Query:   178 SKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSA 237
             SK+AKAY++GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNT++ GKGIGAID  KDWSA
Sbjct:   181 SKYAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTYRDGKGIGAIDPKKDWSA 240

Query:   238 NFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAG 297
             NFT MLG+++ QFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAG
Sbjct:   241 NFTKMLGYEDEQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAG 300

Query:   298 PLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYT 357
             PLHGLANQEVL+WL+KL++++GDN SE+K+K+FIW TLKSGQVVPGYGHAVLRKTDPRYT
Sbjct:   301 PLHGLANQEVLVWLQKLRKELGDNASEDKVKDFIWKTLKSGQVVPGYGHAVLRKTDPRYT 360

Query:   358 CQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMN 417
             CQREFA KHLP+D LF+LVS +YKVVPP+L E GKVKNPWPNVDAHSGVLLQYYGLKEMN
Sbjct:   361 CQREFALKHLPNDPLFQLVSNIYKVVPPILTELGKVKNPWPNVDAHSGVLLQYYGLKEMN 420

Query:   418 YYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458
             YYTVLFGVSRALGVLASL+WDRALGLPIERPKS+ST+ L+K
Sbjct:   421 YYTVLFGVSRALGVLASLVWDRALGLPIERPKSMSTDGLMK 461
GO:0004108 "citrate (Si)-synthase activity" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=ISS
UNIPROTKB|Q17GM7 AAEL002956 "Probable citrate synthase 1, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0261955 kdn "knockdown" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QHL3 Q0QHL3 "Probable citrate synthase, mitochondrial" [Glossina morsitans morsitans (taxid:37546)] Back     alignment and assigned GO terms
UNIPROTKB|O75390 CS "Citrate synthase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P0C1Z2 CS "Citrate synthase, mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V8 cs "Citrate synthase, mitochondrial" [Thunnus obesus (taxid:8241)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V9 cs "Citrate synthase, mitochondrial" [Thunnus albacares (taxid:8236)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V7 cs "Citrate synthase, mitochondrial" [Katsuwonus pelamis (taxid:8226)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V5 cs "Citrate synthase, mitochondrial" [Kajikia audax (taxid:13721)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9W401CISY_DROME2, ., 3, ., 3, ., 10.78270.71470.9935yesN/A
Q6S9V5CISY_TETAD2, ., 3, ., 3, ., 10.76670.67130.9232N/AN/A
Q6S9V7CISY_KATPE2, ., 3, ., 3, ., 10.76670.67130.9232N/AN/A
Q6S9V6CISY_XIPGL2, ., 3, ., 3, ., 10.76670.67130.9232N/AN/A
P23007CISY_CHICK2, ., 3, ., 3, ., 10.74180.66660.9930yesN/A
Q29RK1CISY_BOVIN2, ., 3, ., 3, ., 10.76490.67280.9313yesN/A
Q6S9V9CISY_THUAL2, ., 3, ., 3, ., 10.76900.67130.9232N/AN/A
Q6S9V8CISY_THUOB2, ., 3, ., 3, ., 10.76900.67130.9232N/AN/A
Q7ZVY5CISY_DANRE2, ., 3, ., 3, ., 10.73080.70850.9764yesN/A
P34575CISY_CAEEL2, ., 3, ., 3, ., 10.67900.70690.9743yesN/A
Q17GM7CISY1_AEDAE2, ., 3, ., 3, ., 10.81640.70690.9764N/AN/A
Q9CZU6CISY_MOUSE2, ., 3, ., 3, ., 10.75800.67280.9353yesN/A
A4H9H8CISY_LEIBR2, ., 3, ., 3, ., 10.53000.67750.9297yesN/A
O00098CISY_EMENI2, ., 3, ., 3, ., 10.66210.68060.9261yesN/A
P20115CISY4_ARATH2, ., 3, ., 3, ., 10.61750.70070.9535yesN/A
Q4S5X1CISY_TETNG2, ., 3, ., 3, ., 10.75510.67130.9232N/AN/A
Q4QDX3CISY_LEIMA2, ., 3, ., 3, ., 10.53690.70070.9617yesN/A
Q10306CISY_SCHPO2, ., 3, ., 3, ., 10.63080.66040.8819yesN/A
P00889CISY_PIG2, ., 3, ., 3, ., 10.76950.67280.9353yesN/A
O75390CISY_HUMAN2, ., 3, ., 3, ., 10.77180.67280.9313yesN/A
P51044CISY_ASPNG2, ., 3, ., 3, ., 10.66510.67280.9136yesN/A
Q28DK1CISY_XENTR2, ., 3, ., 3, ., 10.73340.70380.9700yesN/A
Q0GNE1CISY_AMBCR2, ., 3, ., 3, ., 10.71800.70850.9744N/AN/A
Q0GNE0CISY_IGUIG2, ., 3, ., 3, ., 10.71800.70850.9744N/AN/A
Q0QHL3CISY_GLOMM2, ., 3, ., 3, ., 10.78700.71620.9935N/AN/A
P0C1Z2CISY_MACFA2, ., 3, ., 3, ., 10.76950.67280.9313N/AN/A
Q7ZWZ5CISY_XENLA2, ., 3, ., 3, ., 10.73340.70380.9700N/AN/A
Q16P20CISY2_AEDAE2, ., 3, ., 3, ., 10.81640.70690.9764N/AN/A
A4HXU4CISY_LEIIN2, ., 3, ., 3, ., 10.53230.68830.9446yesN/A
Q8VHF5CISY_RAT2, ., 3, ., 3, ., 10.75340.67280.9313yesN/A
P00890CISY1_YEAST2, ., 3, ., 3, ., 10.63490.67750.9123yesN/A
Q553V1CISYM_DICDI2, ., 3, ., 3, ., 10.65390.68520.9608yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.3.1LOW CONFIDENCE prediction!
3rd Layer2.3.30.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
cd06105427 cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( 0.0
cd06103426 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) 0.0
TIGR01793427 TIGR01793, cit_synth_euk, citrate (Si)-synthase, e 0.0
cd06106428 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc 0.0
PRK09569437 PRK09569, PRK09569, type I citrate synthase; Revie 0.0
PLN02456455 PLN02456, PLN02456, citrate synthase 0.0
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 1e-128
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 1e-121
COG0372390 COG0372, GltA, Citrate synthase [Energy production 1e-108
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 7e-80
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 1e-76
cd06114400 cd06114, EcCS_like, Escherichia coli (Ec) citrate 6e-39
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 3e-38
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 5e-37
TIGR01800368 TIGR01800, cit_synth_II, 2-methylcitrate synthase/ 2e-36
cd06110356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 4e-36
PRK05614419 PRK05614, gltA, type II citrate synthase; Reviewed 9e-32
PRK14032447 PRK14032, PRK14032, citrate synthase; Provisional 2e-31
cd06115410 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath 4e-31
cd06116384 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) 2e-30
cd06113406 cd06113, citrate_synt_like_1_2, Citrate synthase ( 6e-30
PRK14036377 PRK14036, PRK14036, citrate synthase; Provisional 7e-29
TIGR01798412 TIGR01798, cit_synth_I, citrate synthase I (hexame 5e-28
cd06111362 cd06111, DsCS_like, Cold-active citrate synthase ( 4e-27
PRK14034372 PRK14034, PRK14034, citrate synthase; Provisional 9e-27
PRK12349369 PRK12349, PRK12349, citrate synthase 3; Provisiona 2e-24
PRK14035371 PRK14035, PRK14035, citrate synthase; Provisional 7e-22
PRK14033375 PRK14033, PRK14033, citrate synthase; Provisional 5e-21
PRK14037377 PRK14037, PRK14037, citrate synthase; Provisional 2e-19
cd06108363 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-meth 4e-18
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 8e-16
cd06117366 cd06117, Ec2MCS_like_1, Subgroup of Escherichia co 3e-12
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 7e-10
PRK12351378 PRK12351, PRK12351, methylcitrate synthase; Provis 1e-08
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 4e-08
pfam01652162 pfam01652, IF4E, Eukaryotic initiation factor 4E 2e-06
PRK12350353 PRK12350, PRK12350, citrate synthase 2; Provisiona 3e-05
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information 
 Score =  904 bits (2338), Expect = 0.0
 Identities = 348/428 (81%), Positives = 384/428 (89%), Gaps = 1/428 (0%)

Query: 32  LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIR 91
           LK  LA  IP EQ R+K FRK +G T VGEVTVDM+YGGMRGIKGLV ETSVLDPEEGIR
Sbjct: 1   LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIR 60

Query: 92  FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVV 151
           FRGLSIPECQK+LPKA GGEEPLPEGLFWLL+TG+VP++ QV ALSK WA+RA LPSHVV
Sbjct: 61  FRGLSIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVV 120

Query: 152 TMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVV 211
           TML+NFP +LHPMSQ SAAITALNSESKFAKAY +G+HKSKYWEYVYEDSMDLIAKLP V
Sbjct: 121 TMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCV 180

Query: 212 AATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSA 271
           AA IYRN ++GGK I AID+N DWSANF +MLG+ + QFTELMRLYLTIHSDHEGGNVSA
Sbjct: 181 AAKIYRNLYRGGK-IIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSA 239

Query: 272 HTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFI 331
           HT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL KLQ++VG +VS+E+L+E++
Sbjct: 240 HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYV 299

Query: 332 WNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETG 391
           W TL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP+D LFKLVSQ+YK+VPPVL E G
Sbjct: 300 WKTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQG 359

Query: 392 KVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSL 451
           K KNPWPNVDAHSGVLLQYYGL EMNYYTVLFGVSRALGVL+ LIWDRALGLP+ERPKS+
Sbjct: 360 KAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVLSQLIWDRALGLPLERPKSV 419

Query: 452 STNDLVKQ 459
           ST+ L K 
Sbjct: 420 STDGLEKL 427

Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). ScCit1 is a nuclear-encoded mitochondrial CS with highly specificity for AcCoA. In addition to its CS function, ScCit1 plays a part in the construction of the TCA cycle metabolon. Yeast cells deleted for Cit1 are hyper-susceptible to apoptosis induced by heat and aging stress. ScCit2 is a peroxisomal CS involved in the glyoxylate cycle; in addition to having activity with AcCoA, it may have activity with PrCoA. Chicken and pig heart CS, two Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and Aspergillus niger (An) CS also belong to this group. Ath CSY4 has a mitochondrial targeting sequence; AthCSY5 has no identifiable targeting sequence. AnCS encoded by the citA gene has both an N-terminal mitochondrial import signal and a C-terminal peroxisiomal target sequence; it is not known if both these signals are functional in vivo. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Length = 427
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type) Back     alignment and domain information
>gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional Back     alignment and domain information
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237590 PRK14033, PRK14033, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99861 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>gnl|CDD|99870 cd06117, Ec2MCS_like_1, Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E Back     alignment and domain information
>gnl|CDD|237070 PRK12350, PRK12350, citrate synthase 2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 645
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
KOG2617|consensus458 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
PLN02456455 citrate synthase 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
PRK14036377 citrate synthase; Provisional 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
PRK14032447 citrate synthase; Provisional 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
PRK14035371 citrate synthase; Provisional 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
PRK14034372 citrate synthase; Provisional 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
PRK14033375 citrate synthase; Provisional 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
PRK06224263 citrate synthase; Provisional 100.0
PLN02522608 ATP citrate (pro-S)-lyase 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
KOG1670|consensus212 100.0
PF01652165 IF4E: Eukaryotic initiation factor 4E; InterPro: I 100.0
KOG1669|consensus208 100.0
PTZ00040233 translation initiation factor E4; Provisional 99.97
COG5053217 CDC33 Translation initiation factor 4E (eIF-4E) [T 99.96
KOG1254|consensus600 99.54
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 97.63
KOG2617|consensus458 81.76
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information 
Probab=100.00  E-value=4.7e-118  Score=967.46  Aligned_cols=426  Identities=73%  Similarity=1.220  Sum_probs=410.9

Q ss_pred             hhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCC
Q psy14235         30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG  109 (645)
Q Consensus        30 ~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~  109 (645)
                      ++||++++++||.+++++++||++||+++||++|+|++++||||+++++|++|+|||++||+||||+|+||++.+|++.+
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~   81 (427)
T TIGR01793         2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG   81 (427)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999987777777


Q ss_pred             CCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCC
Q psy14235        110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH  189 (645)
Q Consensus       110 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~  189 (645)
                      ++++.||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+.++.|+++|+.+.+
T Consensus        82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~  161 (427)
T TIGR01793        82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH  161 (427)
T ss_pred             cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q psy14235        190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNV  269 (645)
Q Consensus       190 k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~  269 (645)
                      +.++|++.++++++|||++|+|+|++||+.+++|++ ++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus       162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~-i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~Na  240 (427)
T TIGR01793       162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQS-ISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNV  240 (427)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccc
Confidence            888999999999999999999999999988889998 7899999999999999988889999999999999999998999


Q ss_pred             chhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCC
Q psy14235        270 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL  349 (645)
Q Consensus       270 ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vy  349 (645)
                      ||||+||||||++|||+|++|||+||+||+||||||+|++||+++.+++|.+++++++++||++++++|++|||||||||
T Consensus       241 STfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vy  320 (427)
T TIGR01793       241 SAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVL  320 (427)
T ss_pred             hhHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCC
Confidence            99999999999999999999999999999999999999999999988788777899999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchh
Q psy14235        350 RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRAL  429 (645)
Q Consensus       350 k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~  429 (645)
                      |.+|||+.+|++++.++.+++++++++++++++++++++++++.||++||||||+|+|+++||||+.++||++|++||++
T Consensus       321 r~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~  400 (427)
T TIGR01793       321 RKTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRAL  400 (427)
T ss_pred             CCCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccc
Confidence            99999999999999998889999999999999999999999999999999999999999999998668999999999999


Q ss_pred             hhhHHHHHHHHhCCCCCCCCcccchhh
Q psy14235        430 GVLASLIWDRALGLPIERPKSLSTNDL  456 (645)
Q Consensus       430 GwlAH~ie~~~~~~pI~RPrs~y~~~~  456 (645)
                      ||+||++||++.+.||+||+|++++++
T Consensus       401 Gw~AH~ieq~~~~~~I~RP~s~~~~~~  427 (427)
T TIGR01793       401 GILSQLIWDRALGLPLERPKSVSTEWL  427 (427)
T ss_pred             hHHHHHHHHHHcCCCccCCcccccccC
Confidence            999999999999999999999999853

This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>KOG2617|consensus Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG1670|consensus Back     alignment and domain information
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs Back     alignment and domain information
>KOG1669|consensus Back     alignment and domain information
>PTZ00040 translation initiation factor E4; Provisional Back     alignment and domain information
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1254|consensus Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG2617|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2cts_A437 Crystallographic Refinement And Atomic Models Of Tw 0.0
4cts_A437 Crystal Structure Analysis And Molecular Model Of A 0.0
6csc_A437 Chicken Citrate Synthase Complex With Trifluoroacet 0.0
1amz_A435 Chicken Citrate Synthase Complex With Nitromethylde 0.0
1csc_A433 Structure Of Ternary Complexes Of Citrate Synthase 0.0
5csc_B429 Structure Of An Open Form Of Chicken Heart Citrate 0.0
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 4e-30
2h12_A436 Structure Of Acetobacter Aceti Citrate Synthase Com 8e-29
3msu_A427 Crystal Structure Of Citrate Synthase From Francise 1e-26
1aj8_A371 Citrate Synthase From Pyrococcus Furiosus Length = 9e-26
1vgp_A373 Crystal Structure Of An Isozyme Of Citrate Synthase 2e-25
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 2e-25
3l96_A426 Structural Determination Of The A50t:s279g:s280k:v2 9e-25
2ibp_A409 Crystal Structure Of Citrate Synthase From Pyrobacu 4e-24
1k3p_A426 Three Dimensional Structure Analysis Of The Type Ii 1e-23
1owb_A427 Three Dimensional Structure Analysis Of The Variant 3e-23
1nxe_A427 A Novel Nadh Allosteric Regulator Site Is Found On 1e-22
4e6y_A432 Type Ii Citrate Synthase From Vibrio Vulnificus Len 1e-21
1vgm_A378 Crystal Structure Of An Isozyme Of Citrate Synthase 4e-18
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 7e-17
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 1e-15
1a59_A378 Cold-Active Citrate Synthase Length = 378 1e-13
3o8j_A404 Crystal Structure Of 2-Methylcitrate Synthase (Prpc 8e-12
3tqg_A375 Structure Of The 2-Methylcitrate Synthase (Prpc) Fr 1e-11
2r26_A384 The Structure Of The Ternary Complex Of Carboxymeth 4e-11
3hwk_A414 Crystal Structure Of Methylcitrate Synthase From My 4e-11
2ifc_A385 The Structure Of The Binary Complex Of Oxalateaceta 4e-11
4b6v_A207 The Third Member Of The Eif4e Family Represses Gene 1e-05
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/431 (77%), Positives = 381/431 (88%)
Query: 28  ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
           +ST+LK +LA  IP EQ R+K FR+ +G+T VG++TVDMMYGGMRG+KGLV ETSVLDP+
Sbjct: 2   SSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDPD 61
Query: 88  EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
           EGIRFRG SIPECQK+LPKAKGGEEPLPEGLFWLLVTG +P+E QV  LSK WA RA LP
Sbjct: 62  EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
           SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAK
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 181
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
           LP VAA IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 182 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 241
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
           NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL
Sbjct: 242 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 301
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
           +++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 302 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVL 361
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
           +E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 362 LEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 421
Query: 448 PKSLSTNDLVK 458
           PKS+ST+ L+K
Sbjct: 422 PKSMSTDGLIK 432
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 Back     alignment and structure
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 Back     alignment and structure
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 Back     alignment and structure
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 Back     alignment and structure
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed With Oxaloacetate And Carboxymethyldethia Coenzyme A (Cmx) Length = 436 Back     alignment and structure
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 Back     alignment and structure
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus Length = 371 Back     alignment and structure
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 373 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|3L96|A Chain A, Structural Determination Of The A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate Synthase From E. Coli Length = 426 Back     alignment and structure
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum Aerophilum Length = 409 Back     alignment and structure
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii Citrate From E.Coli Length = 426 Back     alignment and structure
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l Nadh Complex Of Type Ii Citrate Synthase From E. Coli Length = 427 Back     alignment and structure
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The Surfa Hexameric Type Ii Phe383ala Variant Of Citrate Synthase Length = 427 Back     alignment and structure
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus Length = 432 Back     alignment and structure
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 378 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase Length = 378 Back     alignment and structure
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From Salmonella Typhimurium Length = 404 Back     alignment and structure
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From Coxiella Burnetii Length = 375 Back     alignment and structure
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum Length = 384 Back     alignment and structure
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From Mycobacterium Tuberculosis Length = 414 Back     alignment and structure
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With Citrate Synthase From The Thermophilic Archaeon Thermolasma Acidophilum Length = 385 Back     alignment and structure
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 0.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 3e-50
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 3e-49
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 4e-49
1iom_A377 Citrate synthase; open form, riken structural geno 4e-49
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 1e-48
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 1e-48
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 1e-48
2p2w_A367 Citrate synthase; transferase, structural genomics 2e-48
1vgp_A373 373AA long hypothetical citrate synthase; open for 5e-48
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 8e-48
1vgm_A378 378AA long hypothetical citrate synthase; open for 8e-48
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 8e-48
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 8e-48
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 2e-47
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 4e-47
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 2e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 1e-05
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 2e-05
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 3e-05
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 7e-05
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 1e-04
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 1e-04
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 3e-04
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
 Score =  719 bits (1858), Expect = 0.0
 Identities = 327/432 (75%), Positives = 376/432 (87%)

Query: 29  STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
           ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1   STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60

Query: 89  GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
           GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+  QV  +SK WA RA LPS
Sbjct: 61  GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120

Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 208
           HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKL
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKL 180

Query: 209 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN 268
           P VAA IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGN
Sbjct: 181 PCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240

Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 328
           VSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+
Sbjct: 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLR 300

Query: 329 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLI 388
           ++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+
Sbjct: 301 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLL 360

Query: 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448
           E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERP
Sbjct: 361 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 420

Query: 449 KSLSTNDLVKQY 460
           KS+ST  L K  
Sbjct: 421 KSMSTAGLEKLS 432
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190 Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217 Back     alignment and structure
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189 Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189 Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177 Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195 Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 100.0
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 100.0
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 100.0
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 100.0
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 100.0
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 100.0
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 100.0
4axg_A248 Eukaryotic translation initiation factor 4E; 4E-BP 100.0
1ztp_A251 Basophilic leukemia expressed protein BLES03; HS.4 98.22
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
Probab=100.00  E-value=1.3e-114  Score=945.93  Aligned_cols=432  Identities=75%  Similarity=1.264  Sum_probs=412.1

Q ss_pred             hhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCC
Q psy14235         30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG  109 (645)
Q Consensus        30 ~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~  109 (645)
                      ++||++|+++||.+++.+++||+.||+++||++|+|++++||+|+++..|+||+|||++||+||||+|+||++++|++++
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~   81 (435)
T 1csh_A            2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG   81 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCC
Q psy14235        110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH  189 (645)
Q Consensus       110 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~  189 (645)
                      +.+++||||+||||+|+|||++|+++|+++|.+++.+|+.+.++|+++|+++|||++|+++|++|+++++|+.+|+++.+
T Consensus        82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~  161 (435)
T 1csh_A           82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN  161 (435)
T ss_dssp             CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred             CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999888987776


Q ss_pred             CCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q psy14235        190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNV  269 (645)
Q Consensus       190 k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~  269 (645)
                      +.++|++.++++++|||++|+|+|++||+.+.+|.++++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus       162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~  241 (435)
T 1csh_A          162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV  241 (435)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence            66789999999999999999999999998766565677899999999999999998899999999999999999976999


Q ss_pred             chhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCC
Q psy14235        270 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL  349 (645)
Q Consensus       270 ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vy  349 (645)
                      ||||+|++|||++|+|+|++|||++|+||+|||||++|++||.++.+++|++++++++++||++.+++|++|||||||||
T Consensus       242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy  321 (435)
T 1csh_A          242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL  321 (435)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence            99999999999999999999999999999999999999999999988898766789999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchh
Q psy14235        350 RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRAL  429 (645)
Q Consensus       350 k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~  429 (645)
                      |++|||+++|+++++++.+++++++++.+||++++++|.++++.|+++||||||+|+++++||||+.++||+||++||++
T Consensus       322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~  401 (435)
T 1csh_A          322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL  401 (435)
T ss_dssp             CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence            99999999999999999888999999999999999988889999999999999999999999996569999999999999


Q ss_pred             hhhHHHHHHHHhCCCCCCCCcccchhhHhhhc
Q psy14235        430 GVLASLIWDRALGLPIERPKSLSTNDLVKQYS  461 (645)
Q Consensus       430 GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~vn  461 (645)
                      ||+||++||+..+.||+||+|+||+++++.++
T Consensus       402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~  433 (435)
T 1csh_A          402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSA  433 (435)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhc
Confidence            99999999999998899999999999988764
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Back     alignment and structure
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Back     alignment and structure
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A* Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A* Back     alignment and structure
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster} Back     alignment and structure
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 645
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 1e-148
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 2e-67
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 1e-64
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 1e-63
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 6e-56
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 3e-51
d1l8ba_182 d.86.1.1 (A:) Translation initiation factor eIF4e 9e-06
d1ap8a_213 d.86.1.1 (A:) Translation initiation factor eIF4e 4e-05
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  435 bits (1119), Expect = e-148
 Identities = 327/432 (75%), Positives = 376/432 (87%)

Query: 29  STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
           ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1   STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60

Query: 89  GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
           GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+  QV  +SK WA RA LPS
Sbjct: 61  GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120

Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 208
           HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKL
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKL 180

Query: 209 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN 268
           P VAA IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGN
Sbjct: 181 PCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240

Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 328
           VSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+
Sbjct: 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLR 300

Query: 329 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLI 388
           ++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+
Sbjct: 301 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLL 360

Query: 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448
           E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERP
Sbjct: 361 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 420

Query: 449 KSLSTNDLVKQY 460
           KS+ST  L K  
Sbjct: 421 KSMSTAGLEKLS 432
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
d1ap8a_213 Translation initiation factor eIF4e {Baker's yeast 99.97
d1l8ba_182 Translation initiation factor eIF4e {Mouse (Mus mu 99.97
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.9e-118  Score=970.84  Aligned_cols=432  Identities=76%  Similarity=1.264  Sum_probs=418.6

Q ss_pred             chhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCC
Q psy14235         29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAK  108 (645)
Q Consensus        29 ~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~  108 (645)
                      +++|||+|+|+||++++.+++||++||++++|++|+|++|+||||+++++|+||+|||++||+||||+|+||++.+||+.
T Consensus         1 ~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~it~d~~~~Glrg~~~~~t~iS~iDg~~Gi~YRGy~I~eL~~~l~k~~   80 (435)
T d1csha_           1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAG   80 (435)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeecccccccCCCceeEEeceeEcCccceeECCccHHHHHHHhhccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCC
Q psy14235        109 GGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGV  188 (645)
Q Consensus       109 ~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~  188 (645)
                      ++.+++||||+||||||+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|+++++++.+|.++.
T Consensus        81 ~~e~~~fEEV~yLLl~GeLPt~~EL~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~  160 (435)
T d1csha_          81 GGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGI  160 (435)
T ss_dssp             TCCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTC
T ss_pred             ccccCcHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhcCCccHHHHHHHHHHHhhccCccchhhcccc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCC
Q psy14235        189 HKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN  268 (645)
Q Consensus       189 ~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n  268 (645)
                      ++.++|++.++++++|||++|+|+|++||+.++.|+++..|++++||++||++||++.+|..+++||++|||||||||+|
T Consensus       161 ~~~~~~e~~~~~a~~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~ls~a~nfl~ml~~~~p~~~~~l~~~lil~aDHeg~n  240 (435)
T d1csha_         161 NRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN  240 (435)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCS
T ss_pred             cccccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCCCCCCCcCHHHHHHHHhcCccHHHHHHHHHHHHHHhhccCCc
Confidence            88889999999999999999999999999877899999999999999999999999999999999999999999999899


Q ss_pred             cchhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCC
Q psy14235        269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAV  348 (645)
Q Consensus       269 ~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~V  348 (645)
                      +||||+|+||||++|+|+|++||+++|+||+||||||+|++||+++.+.++.+.+++++++||++.+++|++||||||||
T Consensus       241 ~St~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~v  320 (435)
T d1csha_         241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAV  320 (435)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSS
T ss_pred             chHHHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCcccccCccc
Confidence            99999999999999999999999999999999999999999999999887777789999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecch
Q psy14235        349 LRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRA  428 (645)
Q Consensus       349 yk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~  428 (645)
                      ||..|||+++|+++++++++++++++++.++++++++++.++++.|++|||||||+|+++++||||+.++||+||++||+
T Consensus       321 yk~~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVD~~sg~~~~~lG~p~~~~~t~lFa~sR~  400 (435)
T d1csha_         321 LRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA  400 (435)
T ss_dssp             CCSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHH
T ss_pred             ccCCCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999889999999999999999999999999876899999999999


Q ss_pred             hhhhHHHHHHHHhCCCCCCCCcccchhhHhhh
Q psy14235        429 LGVLASLIWDRALGLPIERPKSLSTNDLVKQY  460 (645)
Q Consensus       429 ~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~v  460 (645)
                      +||+||++||++.+.||+||+|+|+|+.++.+
T Consensus       401 ~Gw~AH~~Eq~~~~~~i~RP~~~Y~g~~~r~~  432 (435)
T d1csha_         401 LGVLAQLIWSRALGFPLERPKSMSTAGLEKLS  432 (435)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccCCCccCCChhhhcc
Confidence            99999999999998899999999999998754
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure