Psyllid ID: psy14236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEcccEEEEccccccccHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEccccccccccHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHccccEEEEEcccEEEEccccccccHHHHHHHHHHccccccccEEHHHHHHccccHHHHHHHHHHcccEEEEEccccccEEEEEccccccccccHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDPALLRERDLFkkkalstptvekrkaetskdepwkakkaktssssssslssslgssnnmayksmsgssqykFGVLAKIVKHMKqrhqdgddhpltIDEILdetnqldvgnKVKIWLSTealqnnpkieviegnkyifkpvfkiKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSlqneiiyvtrpadkrkvmfyndksaqldlDEDFQKLWRSISVDGMDNDKIKEYLEkqgirpiqdhgfkkpvlpgrkknmnrkkqfkkprdneHLADVLENYEAVS
Flexible Loop (DISEMBL)
mdpallrerdlfkkkalstptvekrkaetskdepwkakkaktssssssslsssLGSSNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLStealqnnpkieviegnkyiFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKAlkhlslqneiiyvtrpadkrKVMFYNDksaqldldedFQKLWRSisvdgmdnDKIKEYLekqgirpiqdhgfkkpvlpgrkknmnrkkqfkkprdnehladvlenyeavs
Low Complexity Region (SEG)
MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTssssssslssslgssNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPGrkknmnrkkqfkkPRDNEHLADVLENYEAVS
Disordered region (IsUnstruct)
**********************************************************************YKFGVLAKIVKH***********PLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE**************************************************
Disordered Region (DISOPRED)
*DPALLRERDL***************************************************************VLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL*************************************EHLADVLENYE***
Disordered Region (DISEMBL)
MDPALLRERDLFKKKALS***************************************NNMAYKSMSGSSQYKFGVLAKIVK********GDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPGRKKNM***********NEHLADVLENYEAVS
Disordered Region (DISPRO)
*DPALLRERDLFKKKALS************************************************GSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQG*******************************DNE**ADVLENYE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q2KJF9	289	General transcription fac	yes	N/A	0.979	0.982	0.544	5e-81
P29084	291	Transcription initiation	yes	N/A	0.979	0.975	0.547	3e-79
P29540	288	General transcription fac	N/A	N/A	0.972	0.979	0.558	2e-78
Q9D902	292	General transcription fac	yes	N/A	0.986	0.979	0.529	5e-78
P79011	285	Transcription initiation	yes	N/A	0.617	0.628	0.264	3e-07
Q54KJ8	276	General transcription fac	yes	N/A	0.424	0.445	0.293	1e-06
P36145	328	Transcription initiation	yes	N/A	0.427	0.378	0.273	0.0004

>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2 PE=2 SV=1

 Score =  301 bits (770), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/292 (54%), Positives = 213/292 (72%), Gaps = 8/292 (2%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNM 60
           MDP+LLRER+LFKK+ALSTP VEKR   +      K K       SS S  +S  S+ + 
Sbjct: 1   MDPSLLRERELFKKRALSTPAVEKRSVSSEASSSKKKKAKLEHGGSSGSKQNSDHSNGSF 60

Query: 61  AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
             K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL +E
Sbjct: 61  NLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMSE 120

Query: 121 ALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
           AL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E LP+ +KA
Sbjct: 121 ALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGLPNSQKA 179

Query: 181 LKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE 240
           +K  +L ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EYL+
Sbjct: 180 VK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLK 236

Query: 241 KQGIRPIQDHGFKK--PVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
           +QGI  +QD G KK  P+   +K    +K++FK    NEHLA VL++Y  ++
Sbjct: 237 RQGISSMQDSGPKKVAPIQRRKKPASQKKRRFKT--HNEHLAGVLKDYSDIA 286

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
Bos taurus (taxid: 9913)

>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens GN=GTF2E2 PE=1 SV=1

 Score =  295 bits (755), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/294 (54%), Positives = 215/294 (73%), Gaps = 10/294 (3%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKT--SSSSSSSLSSSLGSSN 58
           MDP+LLRER+LFKK+ALSTP VEKR A +        KK        SS S  +S  S+ 
Sbjct: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60

Query: 59  NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
           +   K++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET  LD+G K K WL 
Sbjct: 61  SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120

Query: 119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
           TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+LP+ +
Sbjct: 121 TEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQ 179

Query: 179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
           KA+K  +L ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EY
Sbjct: 180 KAVK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEY 236

Query: 239 LEKQGIRPIQDHGFKK--PVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
           L++QGI  +Q+ G KK  P+   +K    +K++FK    NEHLA VL++Y  ++
Sbjct: 237 LKRQGISSMQESGPKKVAPIQRRKKPASQKKRRFKT--HNEHLAGVLKDYSDIT 288

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Homo sapiens (taxid: 9606)

>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis GN=gtf2e2 PE=2 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/292 (55%), Positives = 224/292 (76%), Gaps = 10/292 (3%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNM 60
           MDPALLR+R+LFKK+AL+TP VEKR + +S+    K  K + SS+S S  SS  GS+ + 
Sbjct: 1   MDPALLRDRELFKKRALTTPAVEKRPSASSESSKKKRAKLELSSTSGSKPSSD-GSNGSF 59

Query: 61  AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
             KS+SGSS YKFGVLAKIV +MK RHQ GD +PLT++EILDET  LD+G K K WL +E
Sbjct: 60  NLKSLSGSSGYKFGVLAKIVNYMKTRHQRGDTYPLTLEEILDETQHLDIGIKQKQWLMSE 119

Query: 121 ALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
           AL NNPKIE+I+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E LP+ +KA
Sbjct: 120 ALVNNPKIEIIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 178

Query: 181 LKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE 240
           +K  +L ++I++VTRP DK+K++FYNDKS Q  +DE+FQKLWRS+ VD MD++KI+EYL+
Sbjct: 179 IK--ALGDQIVFVTRP-DKKKILFYNDKSCQFTVDEEFQKLWRSVPVDSMDDEKIEEYLK 235

Query: 241 KQGIRPIQDHGFKKPVLP--GRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
           +QGI  +Q+ G KK ++P   RKK  +++++FK    N+HLA VL++Y  V+
Sbjct: 236 RQGISSMQESGPKK-IIPVQKRKKATSQRRRFKT--HNDHLAGVLKDYTDVA 284

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Xenopus laevis (taxid: 8355)

>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus GN=Gtf2e2 PE=2 SV=2

 Score =  291 bits (744), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNN- 59
           MDP+LLR+R+LFKK+ALSTP VEKR   +       +KK K       S  S   S +N 
Sbjct: 1   MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSSKKKKAKVEHGGSSGSKQNSDHNN 60

Query: 60  --MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
                K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL
Sbjct: 61  GSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWL 120

Query: 118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
            TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E LP+ 
Sbjct: 121 MTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNS 179

Query: 178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
           +KA+K  +L ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+E
Sbjct: 180 QKAVK--ALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEE 236

Query: 238 YLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
           YL++QGI  +Q+ G KK     R+K    +K+ +    NEHLA VL++Y  ++
Sbjct: 237 YLKRQGISSMQESGPKKVASIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIT 289

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Mus musculus (taxid: 10090)

>sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa2 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 29/208 (13%)

Query: 99  EILDETNQLDVGNKVKIWLST-------EALQNNPKIEVIEGNK-YIFKPVFKIKDRKGL 150
           E L E N+     ++  +LST         L+ N +I   E N+ + FKP+  I+   GL
Sbjct: 88  EYLKERNEPKTAEEIASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGL 147

Query: 151 LKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYV-TRPADKRKVMFYNDKS 209
           L  L     K   G+ + ++R+  P+    L+ L  Q E++ + TR     K+++ NDKS
Sbjct: 148 LAYLDSQ--KTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKS 205

Query: 210 AQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPG--RKKNMNRK 267
               +D++FQ++W  I +    +  +   L K G++P         V P   ++   N+ 
Sbjct: 206 CDCHVDKEFQQVWHEIPIPPTLD--LASELGKYGLKPTS-------VDPSTVKRAGHNQT 256

Query: 268 KQFKKPR------DNEHLADVLENYEAV 289
            + KKP+       N HL ++L +Y ++
Sbjct: 257 PKQKKPKTRRGKITNTHL-NILRDYSSM 283

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 94  PLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGN-KYIFKPVFKIKDRKGLLK 152
           P    EI+  TN + + +K +I    E L+NN KI +  GN ++ FKP F ++ ++ +L 
Sbjct: 86  PADTKEIMHSTNHM-IDDKPEIL---ELLRNNEKI-IDHGNDRFSFKPKFNVRTQRDILD 140

Query: 153 LLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQL 212
           LL  +     GGIL+ ++ ES  + E  +K L    +I  +        ++F ND+  ++
Sbjct: 141 LLPNYP----GGILVSELAESYNNAESDVKKLKETKQIFAIKAAESACDIIFPNDERLRV 196

Query: 213 DLDEDFQKLWRSI 225
            L  +   +W+SI
Sbjct: 197 PLSSELVDMWKSI 209

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Dictyostelium discoideum (taxid: 44689)

>sp|P36145|T2EB_YEAST Transcription initiation factor IIE subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 22/146 (15%)

Query: 150 LLKLLK-QHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKR-KVMFYND 207
           LLKLL+ Q   KGI      D+++  P C++ +  L   ++I+ +    DK  + ++YN 
Sbjct: 192 LLKLLRSQVTFKGIS---CKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNS 248

Query: 208 KSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFK-KPVLPGRKKNMNR 266
                 +DE+F K+W        +N ++ ++ E    R +QD G K   V P   K   +
Sbjct: 249 GGNLKCIDEEFVKMW--------ENVQLPQFAELP--RKLQDLGLKPASVDPATIKRQTK 298

Query: 267 KKQFKKPRD------NEHLADVLENY 286
           + + KK R       N H+  +L++Y
Sbjct: 299 RVEVKKKRQRKGKITNTHMTGILKDY 324

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
332021782	280	General transcription factor IIE subunit	0.955	0.989	0.678	1e-107
322797068	280	hypothetical protein SINV_01812 [Solenop	0.951	0.985	0.679	1e-107
340716845	285	PREDICTED: LOW QUALITY PROTEIN: general	0.958	0.975	0.663	1e-107
350402907	285	PREDICTED: general transcription factor	0.958	0.975	0.659	1e-106
380017987	285	PREDICTED: general transcription factor	0.958	0.975	0.659	1e-106
383858287	285	PREDICTED: general transcription factor	0.958	0.975	0.646	1e-105
328785332	284	PREDICTED: general transcription factor	0.958	0.978	0.655	1e-105
307208277	281	General transcription factor IIE subunit	0.958	0.989	0.660	1e-104
307184669	286	General transcription factor IIE subunit	0.975	0.989	0.672	1e-104
357605075	291	transcription initiation factor IIE subu	0.962	0.958	0.658	1e-103

>gi|332021782|gb|EGI62128.1| General transcription factor IIE subunit 2 [Acromyrmex echinatior]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/289 (67%), Positives = 242/289 (83%), Gaps = 12/289 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAE--TSKDEPWKAKKAKTSSSSSSSLSSSLGSSN 58
           MDPALLRER+LFKK+AL+TP V+KRK E  T+KDEP K K   +S S+   L       +
Sbjct: 1   MDPALLRERELFKKRALTTPIVDKRKQEKETTKDEPPKKKPKPSSVSTGPKL-------D 53

Query: 59  NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
            + YK+M+GS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDVG+KVK WL 
Sbjct: 54  MVNYKTMAGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVGSKVKQWLQ 113

Query: 119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
           TEAL  NPKIEV +G +++FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESLPHC+
Sbjct: 114 TEALIQNPKIEVTDG-RFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCD 172

Query: 179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
           K LK  +LQNEI+Y+TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD MD+ KI EY
Sbjct: 173 KHLK--NLQNEILYITRPLDKKKIIFYNDKTAQFPIDEEFQKLWRAVAVDAMDDQKIDEY 230

Query: 239 LEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           LEKQGIR +QDHG KKP    RKK +NR+KQFKKPRDNEHLADVLE Y+
Sbjct: 231 LEKQGIRSMQDHGLKKPAPIKRKKPVNRRKQFKKPRDNEHLADVLETYD 279

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797068|gb|EFZ19357.1| hypothetical protein SINV_01812 [Solenopsis invicta]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/290 (67%), Positives = 240/290 (82%), Gaps = 14/290 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAE--TSKDEPWKAKKAKTSSSSSSSLSSSLGSSN 58
           MDPALL+ER+LFKK+AL+TP V+KRK E   +KDEP K KK K S   +       G   
Sbjct: 1   MDPALLKERELFKKRALTTPIVDKRKQEKEATKDEPSK-KKPKVSMVPT-------GPKL 52

Query: 59  NMA-YKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
           +M  YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDVG+KVK WL
Sbjct: 53  DMVNYKTMSGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVGSKVKQWL 112

Query: 118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
            +EAL  NPKIEV EG +++FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESLPHC
Sbjct: 113 QSEALVQNPKIEVTEG-RFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHC 171

Query: 178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
           +K LK  SLQNEI+Y+ RP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD MD+ KI E
Sbjct: 172 DKHLK--SLQNEILYIIRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAMDDQKIDE 229

Query: 238 YLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           YLEKQGIR +QDHG KKP    RKK +NR+KQFKKPRDNEHLADVLE Y+
Sbjct: 230 YLEKQGIRSMQDHGLKKPAPIKRKKPVNRRKQFKKPRDNEHLADVLETYD 279

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716845|ref|XP_003396903.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIE subunit 2-like [Bombus terrestris]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/291 (66%), Positives = 240/291 (82%), Gaps = 13/291 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAE----TSKDEPWKAKKAKTSSSSSSSLSSSLGS 56
           MDPALLRER+LFKKKAL+TP+VEKRK E    T++DEP+K K   +S SS   L      
Sbjct: 1   MDPALLRERELFKKKALTTPSVEKRKKEQEKDTTRDEPFKKKPKLSSVSSGPKL------ 54

Query: 57  SNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIW 116
            + + YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDVG+KVK W
Sbjct: 55  -DMVNYKTMSGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVGSKVKQW 113

Query: 117 LSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPH 176
           L TEAL  NPKIEV    +++FK ++KIKD+K LL+LLKQ DLKG+GGILL+D++ESLPH
Sbjct: 114 LQTEALIKNPKIEVTSDGRFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPH 173

Query: 177 CEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIK 236
           C+K LK  SLQNEI+++TRP DK+K++FYNDK+AQ  +D++FQKLWR+++VD MD+ KI 
Sbjct: 174 CDKHLK--SLQNEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRAVAVDAMDDQKID 231

Query: 237 EYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           EYLEKQGIR +QDHG KKP    RKK ++++KQFKKPRDNEHLADVLE Y+
Sbjct: 232 EYLEKQGIRSMQDHGPKKPAPIKRKKPVSKRKQFKKPRDNEHLADVLETYD 282

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402907|ref|XP_003486642.1| PREDICTED: general transcription factor IIE subunit 2-like [Bombus impatiens]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 240/291 (82%), Gaps = 13/291 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAE----TSKDEPWKAKKAKTSSSSSSSLSSSLGS 56
           MDPALLRER+LFKK+AL+TP+VEKRK E    T++DEP+K K   +S SS   L      
Sbjct: 1   MDPALLRERELFKKRALTTPSVEKRKKEQEKDTTRDEPFKKKPKLSSVSSGPKL------ 54

Query: 57  SNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIW 116
            + + YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDVG+KVK W
Sbjct: 55  -DMVNYKTMSGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVGSKVKQW 113

Query: 117 LSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPH 176
           L TEAL  NPKIEV    +++FK ++KIKD+K LL+LLKQ DLKG+GGILL+D++ESLPH
Sbjct: 114 LQTEALIKNPKIEVTSDGRFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPH 173

Query: 177 CEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIK 236
           C+K LK  SLQNEI+++TRP DK+K++FYNDK+AQ  +D++FQKLWR+++VD MD+ KI 
Sbjct: 174 CDKHLK--SLQNEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRAVAVDAMDDQKID 231

Query: 237 EYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           EYLEKQGIR +QDHG KKP    RKK ++++KQFKKPRDNEHLADVLE Y+
Sbjct: 232 EYLEKQGIRSMQDHGPKKPAPIKRKKPVSKRKQFKKPRDNEHLADVLETYD 282

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017987|ref|XP_003692922.1| PREDICTED: general transcription factor IIE subunit 2-like [Apis florea]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 238/291 (81%), Gaps = 13/291 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKD----EPWKAKKAKTSSSSSSSLSSSLGS 56
           MDPALLRER+LFKKKALSTPT+EK++ E  KD    EP+K K   +S S+   L      
Sbjct: 1   MDPALLRERELFKKKALSTPTIEKKRKEQEKDSIRDEPFKKKPKPSSVSNGPKL------ 54

Query: 57  SNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIW 116
            + + YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDVG+KVK W
Sbjct: 55  -DMVNYKTMSGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVGSKVKQW 113

Query: 117 LSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPH 176
           L TEAL  NPKIEV    +++FK ++KIKD+K LL+LLKQ DLKG+GGILL+D++ESLPH
Sbjct: 114 LQTEALVKNPKIEVTSDGRFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPH 173

Query: 177 CEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIK 236
           C+K LK  SLQNEI+++TRP DK+K++FYNDK+AQ  +D++FQKLWRS++VD MD+ KI 
Sbjct: 174 CDKHLK--SLQNEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRSVAVDAMDDQKID 231

Query: 237 EYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           EYLEKQGIR +QDHG KKP    RKK ++++KQFKKPRDNEHLADVLE Y+
Sbjct: 232 EYLEKQGIRSMQDHGPKKPAPIKRKKPISKRKQFKKPRDNEHLADVLETYD 282

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858287|ref|XP_003704633.1| PREDICTED: general transcription factor IIE subunit 2-like [Megachile rotundata]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 238/291 (81%), Gaps = 13/291 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAE----TSKDEPWKAKKAKTSSSSSSSLSSSLGS 56
           MDPALLRER+LFKK+ALSTP VEK++ E    +++DEP K K   ++ S+   L      
Sbjct: 1   MDPALLRERELFKKRALSTPAVEKKRKEQDKDSARDEPLKKKPKPSTVSTGPKL------ 54

Query: 57  SNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIW 116
            + + YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT+DEILDETNQLDVG+KVK W
Sbjct: 55  -DMVNYKTMSGSTQYKFGVLAKIVKHMKTRHQEGDDHPLTLDEILDETNQLDVGSKVKQW 113

Query: 117 LSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPH 176
           L TEAL  NPKIEV    +++FK ++KIKD+K LL+LLKQ DLKG+GGILL+D++ESLPH
Sbjct: 114 LQTEALVKNPKIEVTSDGRFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPH 173

Query: 177 CEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIK 236
           C+K LK  SLQNEI+++TRP DK+K++FYNDK+AQ  +D++FQKLWR+++VD MD+ KI 
Sbjct: 174 CDKHLK--SLQNEILFITRPMDKKKIVFYNDKTAQFPIDDEFQKLWRAVAVDAMDDQKID 231

Query: 237 EYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           EYLEKQGIR +QDHG KKP    RKK ++++KQFK+PRDNEHLADVLE Y+
Sbjct: 232 EYLEKQGIRSMQDHGPKKPAPIKRKKPISKRKQFKRPRDNEHLADVLETYD 282

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785332|ref|XP_001120176.2| PREDICTED: general transcription factor IIE subunit 2-like [Apis mellifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/290 (65%), Positives = 236/290 (81%), Gaps = 12/290 (4%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKD---EPWKAKKAKTSSSSSSSLSSSLGSS 57
           MDPALLRER+LFKKKAL+TPT+EK++ E  KD   EP+K K   +S S+   L       
Sbjct: 1   MDPALLRERELFKKKALTTPTIEKKRKEQEKDIRDEPFKKKPKPSSVSNGPKL------- 53

Query: 58  NNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
           + + YK+MSGS+QYKFGVLAKIVKHMK RHQ+GDDHPLT++EILDETNQLDV  KVK WL
Sbjct: 54  DMVNYKTMSGSTQYKFGVLAKIVKHMKARHQEGDDHPLTLEEILDETNQLDVDQKVKQWL 113

Query: 118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
            TEAL  NPKIEV    +++FK ++KIKD+K LL+LLKQ DLKG+GGILL+D++ESLPHC
Sbjct: 114 QTEALVKNPKIEVTSDGRFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPHC 173

Query: 178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
           +K LK  SLQNEI+++TRP DK+K++FYNDK+AQ  +D++FQKLWRS++VD MD+ KI E
Sbjct: 174 DKHLK--SLQNEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRSVAVDAMDDQKIDE 231

Query: 238 YLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           YLEKQGIR +QDHG KKP    RKK ++++KQFKKPRDNEHLADVLE Y+
Sbjct: 232 YLEKQGIRSMQDHGPKKPAPIKRKKPISKRKQFKKPRDNEHLADVLETYD 281

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208277|gb|EFN85709.1| General transcription factor IIE subunit 2 [Harpegnathos saltator]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 237/289 (82%), Gaps = 11/289 (3%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETS--KDEPWKAKKAKTSSSSSSSLSSSLGSSN 58
           MDPALLRER+LFKK+AL+TPTVEK+K E    +D+  K K   +S S+   L       +
Sbjct: 1   MDPALLRERELFKKRALTTPTVEKKKKEQEILRDDSSKKKPKPSSISTGPKL-------D 53

Query: 59  NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
            + YK+M+GS+QYKFGVLAKIVKHMK RHQDGDDHPLT++EILDETNQLDVG KVK WL 
Sbjct: 54  MVNYKTMAGSTQYKFGVLAKIVKHMKARHQDGDDHPLTLEEILDETNQLDVGLKVKQWLQ 113

Query: 119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
           TEAL  NPKI+V   ++++FK ++KIKD+K LL+LLKQHDLKG+GGILL+D++ESLPHCE
Sbjct: 114 TEALVKNPKIDVTTDSRFVFKAMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCE 173

Query: 179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
           K LK  +LQNEI+++TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD MD+ KI EY
Sbjct: 174 KHLK--ALQNEILFITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAMDDQKIDEY 231

Query: 239 LEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           LEKQGIR +QDHG KKP    RKK +NR+KQFKKPRDNEHLADVLE Y+
Sbjct: 232 LEKQGIRSMQDHGLKKPAPLKRKKPVNRRKQFKKPRDNEHLADVLETYD 280

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184669|gb|EFN70998.1| General transcription factor IIE subunit 2 [Camponotus floridanus]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/290 (67%), Positives = 237/290 (81%), Gaps = 7/290 (2%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSK--DEPWKAKKAKTSSSSSSSLSSSLGSSN 58
           MDPALLRER+LFKK+AL+TP VEK+K E     DE  K  +        SS+S+  G   
Sbjct: 1   MDPALLRERELFKKRALTTPIVEKKKQEKETTKDEAPKKNEPPKKKLKVSSIST--GPKL 58

Query: 59  NMA-YKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
           +M  YK+M+GS+QYKFGVLAKIVKHMK RHQDGDDHPLT++EILDETNQLDVG+KVK WL
Sbjct: 59  DMVNYKTMTGSTQYKFGVLAKIVKHMKARHQDGDDHPLTMEEILDETNQLDVGSKVKQWL 118

Query: 118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
            TEAL  NPKIEV   +++ FKP++KIKD+K LL+LLKQHDLKG+GGILL+D++ESLPHC
Sbjct: 119 QTEALLKNPKIEVTSDSRFAFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHC 178

Query: 178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
           +K LK  SLQNEI+Y+TRP DK+K++FYNDK+AQ  +DE+FQKLWR+++VD MD+ KI E
Sbjct: 179 DKHLK--SLQNEILYITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAVDAMDDQKIDE 236

Query: 238 YLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           YLEKQGIR +QDHG KKP    RKK +NR+KQFKKPRDNEHLADVLE Y+
Sbjct: 237 YLEKQGIRSMQDHGLKKPAPIKRKKPVNRRKQFKKPRDNEHLADVLETYD 286

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605075|gb|EHJ64456.1| transcription initiation factor IIE subunit beta [Danaus plexippus]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/287 (65%), Positives = 241/287 (83%), Gaps = 8/287 (2%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNM 60
           MDPALLRER+ F+KKAL+TP+VEK+K + S  +     K K+ SSSS++ +  + ++N  
Sbjct: 1   MDPALLREREAFRKKALATPSVEKKKRDDSFKD---DSKKKSKSSSSANAAPKIDATN-- 55

Query: 61  AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
            YK+M+GSS Y+FGVLA+IV+HMK RHQ+GDDHPL+IDEILDETNQLDVG+K+K WL TE
Sbjct: 56  -YKTMAGSSSYRFGVLARIVRHMKSRHQEGDDHPLSIDEILDETNQLDVGSKIKQWLQTE 114

Query: 121 ALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
           ALQNNPKIE     K+IFKPV+KIKD+K LL+LLKQHDLKG+GGI L+DV+ESLPHC++A
Sbjct: 115 ALQNNPKIEHTFDGKFIFKPVYKIKDKKSLLRLLKQHDLKGLGGIFLEDVQESLPHCDRA 174

Query: 181 LKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE 240
           LK  SL  EI+Y+TRP+DK+K++FYNDK+A LD+DE+F KLWR+ +VD MD+ KI+EYLE
Sbjct: 175 LK--SLAQEILYITRPSDKKKILFYNDKTATLDVDEEFVKLWRATAVDAMDDAKIEEYLE 232

Query: 241 KQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYE 287
           KQGI+ +QDHG +KPV+P RKK   +++QFKKPRDNEHLADVLE YE
Sbjct: 233 KQGIKSMQDHGPRKPVVPKRKKVTQKRRQFKKPRDNEHLADVLETYE 279

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
FB|FBgn0015829	292	TfIIEbeta "Transcription facto	0.962	0.955	0.604	3.7e-87
UNIPROTKB|P29084	291	GTF2E2 "Transcription initiati	0.986	0.982	0.530	8.1e-76
UNIPROTKB|F1MUX7	289	GTF2E2 "General transcription	0.982	0.986	0.529	3.5e-75
UNIPROTKB|Q2KJF9	289	GTF2E2 "General transcription	0.982	0.986	0.529	3.5e-75
UNIPROTKB|E2R5J2	291	GTF2E2 "Uncharacterized protei	0.986	0.982	0.527	9.3e-75
MGI|MGI:1915403	292	Gtf2e2 "general transcription	0.986	0.979	0.518	1.9e-74
ZFIN|ZDB-GENE-030131-6794	291	gtf2e2 "general transcription	0.972	0.969	0.529	2.5e-72
RGD|1310134	279	Gtf2e2 "general transcription	0.862	0.896	0.562	4.1e-72
UNIPROTKB|Q5ZIE1	290	GTF2E2 "Uncharacterized protei	0.982	0.982	0.494	1.1e-71
UNIPROTKB|F1RX65	209	GTF2E2 "Uncharacterized protei	0.703	0.976	0.528	2.1e-54

FB|FBgn0015829 TfIIEbeta "Transcription factor IIEbeta" [Drosophila melanogaster (taxid:7227)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 174/288 (60%), Positives = 210/288 (72%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTXXXXXXXXXXXXXXXNNM 60
             MDPALLRER+ FKK+A++TPTVEK+   +  D P  A    +               +  
Sbjct:     1 MDPALLREREAFKKRAMATPTVEKK---SKPDRP--APPPPSDDSRRKMRPPNAPRLDAT 55

Query:    61 AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
              YK+MSGSSQY+FGVLAKIVK M+ RHQDGDDHPLTIDEILDETNQLD+G  VK WL++E
Sbjct:    56 TYKTMSGSSQYRFGVLAKIVKFMRTRHQDGDDHPLTIDEILDETNQLDIGQSVKNWLASE 115

Query:   121 ALQNNPKIEVIE-GNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEK 179
             AL NNPK+E    G K+ FKPV+KIKD K L++LLKQHDLKG+GGILLDDV+ESLPHCEK
Sbjct:   116 ALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCEK 175

Query:   180 ALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
              LK+ S   EI++V RP DK+K++FYND++A   +D++FQKLWRS +VD MD+ KI EYL
Sbjct:   176 VLKNRSA--EILFVVRPIDKKKILFYNDRTANFSVDDEFQKLWRSATVDAMDDAKIDEYL 233

Query:   240 EKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYE 287
             EKQGIR +QDHG KK + P              PRDNEHLADVLE YE
Sbjct:   234 EKQGIRSMQDHGLKKAI-PKRKKAANKKRQFKKPRDNEHLADVLEVYE 280

GO:0005634 "nucleus" evidence=IDA

GO:0005673 "transcription factor TFIIE complex" evidence=ISS;IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P29084 GTF2E2 "Transcription initiation factor IIE subunit beta" [Homo sapiens (taxid:9606)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 155/292 (53%), Positives = 202/292 (69%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAET-SKDEPWKAKKAKTXXXXXXXXXXXXXXXN- 58
             MDP+LLRER+LFKK+ALSTP VEKR A + S     K KK K                N 
Sbjct:     1 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60

Query:    59 NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
             +   K++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET  LD+G K K WL 
Sbjct:    61 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120

Query:   119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
             TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+LP+ +
Sbjct:   121 TEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQ 179

Query:   179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
             KA+K  +L ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EY
Sbjct:   180 KAVK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEY 236

Query:   239 LEKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             L++QGI  +Q+ G KK                     NEHLA VL++Y  ++
Sbjct:   237 LKRQGISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIT 288

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MUX7 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 154/291 (52%), Positives = 202/291 (69%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTXXXXXXXXXXXXXXXN-N 59
             MDP+LLRER+LFKK+ALSTP VEKR   +S+    K KKAK                N +
Sbjct:     1 MDPSLLRERELFKKRALSTPVVEKRSV-SSEASSSKKKKAKLEHGGSSGSKQNSDHSNGS 59

Query:    60 MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLST 119
                K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL +
Sbjct:    60 FNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMS 119

Query:   120 EALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEK 179
             EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E LP+ +K
Sbjct:   120 EALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGLPNSQK 178

Query:   180 ALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
             A+K  +L ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EYL
Sbjct:   179 AVK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYL 235

Query:   240 EKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             ++QGI  +QD G KK                     NEHLA VL++Y  ++
Sbjct:   236 KRQGISSMQDSGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIA 286

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|Q2KJF9 GTF2E2 "General transcription factor IIE subunit 2" [Bos taurus (taxid:9913)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 154/291 (52%), Positives = 202/291 (69%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTXXXXXXXXXXXXXXXN-N 59
             MDP+LLRER+LFKK+ALSTP VEKR   +S+    K KKAK                N +
Sbjct:     1 MDPSLLRERELFKKRALSTPAVEKRSV-SSEASSSKKKKAKLEHGGSSGSKQNSDHSNGS 59

Query:    60 MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLST 119
                K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL +
Sbjct:    60 FNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMS 119

Query:   120 EALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEK 179
             EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E LP+ +K
Sbjct:   120 EALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGLPNSQK 178

Query:   180 ALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
             A+K  +L ++I++V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EYL
Sbjct:   179 AVK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYL 235

Query:   240 EKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             ++QGI  +QD G KK                     NEHLA VL++Y  ++
Sbjct:   236 KRQGISSMQDSGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIA 286

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

UNIPROTKB|E2R5J2 GTF2E2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 154/292 (52%), Positives = 200/292 (68%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAET-SKDEPWKAKKAKTXXXXXXXXXXXXXXXN- 58
             MDP+LLRER+LFKK+ALSTP VEKR   + S     K KKAK                N 
Sbjct:     1 MDPSLLRERELFKKRALSTPVVEKRSVSSESSSSSSKKKKAKLEHGGSSGSKQNSDHSNG 60

Query:    59 NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
             +   K++SG S YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL 
Sbjct:    61 SFNLKALSGGSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLM 120

Query:   119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
             TEAL NNPKIEVI+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E LP+ +
Sbjct:   121 TEALVNNPKIEVIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNSQ 179

Query:   179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
             KA+K  +L ++II+V RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EY
Sbjct:   180 KAVK--ALGDQIIFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEY 236

Query:   239 LEKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             L++QGI  +Q+ G KK                     NEHLA VL++Y  ++
Sbjct:   237 LKRQGISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIA 288

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

MGI|MGI:1915403 Gtf2e2 "general transcription factor II E, polypeptide 2 (beta subunit)" [Mus musculus (taxid:10090)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 152/293 (51%), Positives = 202/293 (68%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRK--AETSKDEPWKAKKAKTXXXXXXXXXXXXXXXN 58
             MDP+LLR+R+LFKK+ALSTP VEKR   +E+      K KKAK                N
Sbjct:     1 MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSSKKKKAKVEHGGSSGSKQNSDHNN 60

Query:    59 -NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
              +   K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL
Sbjct:    61 GSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWL 120

Query:   118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
              TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E LP+ 
Sbjct:   121 MTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNS 179

Query:   178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
             +KA+K  +L ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+E
Sbjct:   180 QKAVK--ALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEE 236

Query:   238 YLEKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             YL++QGI  +Q+ G KK                     NEHLA VL++Y  ++
Sbjct:   237 YLKRQGISSMQESGPKKVASIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIT 289

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

ZFIN|ZDB-GENE-030131-6794 gtf2e2 "general transcription factor IIE, polypeptide 2, beta" [Danio rerio (taxid:7955)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 152/287 (52%), Positives = 194/287 (67%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTXXXXXXXXXXXXXXXN-N 59
             MDPALLRER+LFKK+ALSTP VEKR A +      K KK+K                N +
Sbjct:     1 MDPALLRERELFKKRALSTPAVEKRPAASEASGSSKKKKSKPDKESSSSSKNNSDPSNGS 60

Query:    60 MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLST 119
                K++SGSS YKFGVLA+IV +MK RHQ GD HPLT++EILDET  LD+G K K WL +
Sbjct:    61 FNLKALSGSSGYKFGVLARIVNYMKTRHQRGDTHPLTLEEILDETKLLDIGMKQKQWLMS 120

Query:   120 EALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEK 179
             EAL +NPKI+V EG KY FKP + +KD+K LL+LL +HD  G+GG+LLDDV E LP+  K
Sbjct:   121 EALASNPKIDVREG-KYAFKPKYHLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNAAK 179

Query:   180 ALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
             A+K  +L ++II+VTRP DK+K++FYNDK  Q  +DE+FQKLWRS+ VD +D +KI+EYL
Sbjct:   180 AIK--ALGDQIIFVTRP-DKKKILFYNDKHCQFVVDEEFQKLWRSVPVDSIDEEKIEEYL 236

Query:   240 EKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENY 286
             +KQGI  +Q+ G KK                     N+HL  VLE+Y
Sbjct:   237 KKQGISSMQETGPKKMTPIQKRKKPGTQRKRRYKTHNDHLNGVLEDY 283

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

RGD|1310134 Gtf2e2 "general transcription factor IIE, polypeptide 2, beta" [Rattus norvegicus (taxid:10116)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 144/256 (56%), Positives = 189/256 (73%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAET-SKDEPWKAKKAKTXXXXXXXXXXXXXXXN- 58
             MDP+LLR+R+LFKK+ALSTP VEKR   + S     K KKAK                N 
Sbjct:     1 MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSKKKKAKVEHGGSSGSKQNSDHNNG 60

Query:    59 NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
             +   K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL 
Sbjct:    61 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLM 120

Query:   119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
             TEAL NNPKIEV++G KY FKP + +KD+K LL+LL  HD +G+GGILL+D+ E LP+ +
Sbjct:   121 TEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNSQ 179

Query:   179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
             KA+K  +L ++I++V+RP DK+K++F+NDKS Q  +DE+FQKLWRS++VD MD +KI+EY
Sbjct:   180 KAVK--ALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEY 236

Query:   239 LEKQGIRPIQDHGFKK 254
             L++QGI  +Q+ G KK
Sbjct:   237 LKRQGISSMQESGPKK 252

GO:0005634 "nucleus" evidence=ISO

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q5ZIE1 GTF2E2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 144/291 (49%), Positives = 199/291 (68%)

Query:     1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTXXXXXXXXXXXXXXXN-N 59
             MDP+LLRER+LF+K ALSTP VEKR A +++    K KK K                N +
Sbjct:     1 MDPSLLRERELFRKHALSTPAVEKRPAPSAEPSSSKKKKVKVEQGGPSSSKQSSDHSNGS 60

Query:    60 MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLST 119
                K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET  LD+G K K WL  
Sbjct:    61 FNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMN 120

Query:   120 EALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEK 179
             EAL NNPKIEV++G K+ FKP + +KD+K LL+LL +HD +G+GGI L+++ E LP+  K
Sbjct:   121 EALVNNPKIEVVDG-KFAFKPKYNLKDKKALLRLLDKHDQQGLGGIFLEEIEEGLPNAHK 179

Query:   180 ALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
             A+K  +L ++I++VTRP DKR++++YNDKS    +DE+F+KLWRSI +D +D DK++EYL
Sbjct:   180 AIK--ALGDQILFVTRP-DKRQLLYYNDKSCHFSVDEEFRKLWRSIPMDSIDEDKVEEYL 236

Query:   240 EKQGIRPIQDHGFKKPVLPGXXXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
             ++QGI  +++ G +K + P                 N+HLA VL++Y  V+
Sbjct:   237 KRQGISSMREAGPRK-IAPAQRKKPTSQKKRRFKTHNDHLAGVLKDYSDVT 286

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1RX65 GTF2E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 111/210 (52%), Positives = 150/210 (71%)

Query:    83 MKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVF 142
             MK RHQ GD HPLT++EILDET  LD+G K K WL TEAL NNPKIEVI+G KY FKP +
Sbjct:     1 MKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDG-KYAFKPKY 59

Query:   143 KIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKV 202
              +KD+K LL+LL +HD +G+GGILL+D+ E LP+ +KA+K  +L ++I++V RP DK+K+
Sbjct:    60 NLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNSQKAVK--ALGDQILFVNRP-DKKKI 116

Query:   203 MFYNDKSAQLDLDE--DFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPGX 260
             +F+NDKS Q  +DE  +FQKLWRS++VD MD +KI+EYL++QGI  +Q+ G KK      
Sbjct:   117 LFFNDKSCQFSVDEGTEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAPIQR 176

Query:   261 XXXXXXXXXXXXPRDNEHLADVLENYEAVS 290
                            NEHLA VL++Y  ++
Sbjct:   177 RKKPASQKKRRFKTHNEHLAGVLKDYSDIA 206

GO:0005737 "cytoplasm" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005673 "transcription factor TFIIE complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D902	T2EB_MOUSE	No assigned EC number	0.5290	0.9862	0.9794	yes	N/A
P29084	T2EB_HUMAN	No assigned EC number	0.5476	0.9793	0.9759	yes	N/A
P29540	T2EB_XENLA	No assigned EC number	0.5582	0.9724	0.9791	N/A	N/A
Q2KJF9	T2EB_BOVIN	No assigned EC number	0.5445	0.9793	0.9826	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
cd07977	75	cd07977, TFIIE_beta_winged_helix, TFIIE_beta_winge	3e-25
pfam02186	65	pfam02186, TFIIE_beta, TFIIE beta subunit core dom	6e-17
COG5174	285	COG5174, TFA2, Transcription initiation factor IIE	3e-13

>gnl|CDD|153423 cd07977, TFIIE_beta_winged_helix, TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

 Score = 95.4 bits (238), Expect = 3e-25
 Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 5/80 (6%)

Query: 66  SGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNN 125
           +GS  + F  LAKIV +MK+RHQ    HPLT+DEILD  + LD+G K+K WL +EAL NN
Sbjct: 1   TGSGTHVFTQLAKIVDYMKKRHQ----HPLTLDEILDYLSLLDIGPKLKEWLKSEALVNN 56

Query: 126 PKIEVIEGNKYIFKPVFKIK 145
           PKI+  +G  + FKP + I+
Sbjct: 57  PKIDPKDG-TFSFKPKYNIR 75

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional domains, an N-terminal serine-rich region, a central core domain exhibiting a winged-helix structure capable of binding double-stranded DNA, a leucine repeat, a sigma3 region, and a C-terminal domain containing two basic regions. The assembly of transcription preinitiation complex (PIC) includes the general transcription factors and RNA polymerase II (pol II) initiated by the binding of the TBP subunit of TFIID to the TATA box, followed by either the sequential assembly of other general transcription factors and pol II or a preassembled pol II holoenzyme pathway. TFIIE interacts directly with TFIIF, TFIIB, pol II, and promoter DNA. TFIIE recruits TFIIH and regulates its activities. TFIIE and TFIIH are also important for the transition from initiation to elongation. Length = 75

>gnl|CDD|216922 pfam02186, TFIIE_beta, TFIIE beta subunit core domain

 Score = 73.1 bits (180), Expect = 6e-17
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 12/76 (15%)

Query: 70  QYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIE 129
            + F VLAK V++MK+R     DHPLT++EILD  + LD+G  V  W     L+NNPKI+
Sbjct: 1   SHLFTVLAKAVEYMKER-----DHPLTVEEILDYLS-LDIGPTVLPW-----LKNNPKIK 49

Query: 130 VI-EGNKYIFKPVFKI 144
              +G  + FKP++ I
Sbjct: 50  FDPKGGTFAFKPLYNI 65

General transcription factor TFIIE consists of two subunits, TFIIE alpha pfam02002 and TFIIE beta. TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The structure of the DNA binding core region has been solved and has a winged helix fold. Length = 65

>gnl|CDD|227501 COG5174, TFA2, Transcription initiation factor IIE, beta subunit [Transcription]

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 62/294 (21%), Positives = 114/294 (38%), Gaps = 42/294 (14%)

Query: 12  FKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNMAYKSM------ 65
           FK K  S P +   + +             ++   SS+  S   S    A          
Sbjct: 11  FKSKVKSAPVIAPAQKKRMASPCHFEVGLNSNDGHSSTAWSKGSSPTKKARIPRMDRDRI 70

Query: 66  ----SGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEA 121
                G  ++    L   ++++KQ      D PL+ +EI D    +D+ N          
Sbjct: 71  QSIDRGVQRHTNSYLHAAIEYLKQH-----DRPLSFEEIKDYL-SIDLHNNY-----VLL 119

Query: 122 LQNNPKIEVIEGNK-YIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
           L+   +I +   +  ++FKP++ I+  + LLK+L+        G+ +  + +  P+    
Sbjct: 120 LKKKRRIRIDATHSTFMFKPLYSIRSVEDLLKVLR--SQGTEEGLSMKKLMDGWPNVVPF 177

Query: 181 LKHLSLQNEIIYVTRPADKRKVMF-YNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYL 239
           ++ L   NEI+ +    D   V+   N ++ +  +D +F+ LW  +        +I  Y 
Sbjct: 178 VEELEKSNEILILRTDKDGSPVVVWNNTQNLECPVDPEFKSLWNQV--------RIPTYH 229

Query: 240 EKQGIRPIQDHGFKK-PVLPGRKKNMNRKKQFKKPRD------NEHLADVLENY 286
           +   IR +   G K   V P  KK    K + KK         N H+  +L +Y
Sbjct: 230 DL--IRELNTAGLKPTSVDPNTKKRPTIKIKKKKRSRRKGKITNTHVKGILLDY 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG3095|consensus	284		100.0
COG5174	285	TFA2 Transcription initiation factor IIE, beta sub	100.0
cd07977	75	TFIIE_beta_winged_helix TFIIE_beta_winged_helix do	99.84
PF02186	65	TFIIE_beta: TFIIE beta subunit core domain; InterP	99.8
PHA02943	165	hypothetical protein; Provisional	93.27
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	90.34
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.5
PF09756	188	DDRGK: DDRGK domain; InterPro: IPR019153 This is a	85.76
KOG3054|consensus	299		82.76

>KOG3095|consensus

Probab=100.00  E-value=1.4e-70  Score=503.46  Aligned_cols=276  Identities=41%  Similarity=0.660  Sum_probs=231.6

Q ss_pred             CChHHHHhHHHHHHhhccCCcccccCCCCCC-CCch-hhhhccCCCCCCCCCCCC--CCCCCCCccccCCCCcchhHHHH
Q psy14236          1 MDPALLRERDLFKKKALSTPTVEKRKAETSK-DEPW-KAKKAKTSSSSSSSLSSS--LGSSNNMAYKSMSGSSQYKFGVL   76 (290)
Q Consensus         1 md~~ll~~~~~fk~ra~~~p~ve~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~tg~~~~~~t~l   76 (290)
                      |||+||+||+||+|+|++||+|+++.+++.. ++++ ....+   .++++++++.  ..+.++.++.+++|..++-|+.+
T Consensus         1 ~~~~Ll~ql~aFkK~~~~~p~v~~~~~ps~~~t~ss~~~~~~---~~~~~~p~~~~lk~~~~s~~~~~ls~~~~~~fgt~   77 (284)
T KOG3095|consen    1 MDPALLRQLEAFKKKAASTPVVAKKSAPSRFPTPSSRANSNK---ASKASKPNLPRLKKDANSSNLKSLSNSSQSHFGTH   77 (284)
T ss_pred             CCHHHHHHHHHHHHHHhcCcccccCCCCCCCCCCcchhcchh---hhccCCCCCcccccccchhhHHhhcCcccccchhH
Confidence            9999999999999999999999999877552 2222 11111   1223333322  12344789999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCCCCCHHHHHHHHHh
Q psy14236         77 AKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQ  156 (290)
Q Consensus        77 ~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~Ik~k~~LL~lL~~  156 (290)
                      ++||.||+.+|+.+.++|    ||++|++++|+..+  .|+..|+|++||||+|+ .+||+|||+|+|+|+++||++|++
T Consensus        78 ~kiv~~~~~~h~~~~~~P----E~i~E~~~~d~~~~--n~~l~esLkkNpri~~d-~~~FsfKp~y~Ird~~~Ll~llr~  150 (284)
T KOG3095|consen   78 AKIVIYLLTEHLRGLTHP----EIIDELQHYDLKHK--NWLLLESLKKNPRIEYD-PRTFSFKPTYNIRDKKQLLKLLRK  150 (284)
T ss_pred             HHHHHHHHHHHHhcCCcH----HHHHHHHHHHhhhc--cHHHHHHHhhCCceEec-CceeeccCccccCCHHHHHHHHHh
Confidence            999999999999998888    88899998898333  35555999999999999 559999999999999999999999


Q ss_pred             cccCCCCccchhhhHhhhhhHHHHHHHhhhCCcEEEEecCC-CCceEEEecCCCCCCCCCHHHHHHhhhcccCCCChhhH
Q psy14236        157 HDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPA-DKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKI  235 (290)
Q Consensus       157 ~~q~~~~GI~v~dLkD~~p~~~~~I~~Le~e~~Ilvv~~~~-~~~rivf~ND~~~~~~VD~EFk~lW~~v~VP~~de~di  235 (290)
                      |+  ++|||+|+||+||||+|+++|++|++.|+||||+++. ++++||||||.+|.+.||+||++|||+|.||++ +.||
T Consensus       151 ~~--~~~GI~v~DL~d~~pNv~~~lk~L~~s~eIl~l~t~~d~k~kivf~ND~~~~~~VDdEFk~LWr~V~Ip~~-~~dl  227 (284)
T KOG3095|consen  151 HD--TLGGILVSDLKDAWPNVDEDLKELEKSGEILVLRTPKDDKPKIVFYNDKSCSFSVDDEFKKLWRSVTIPSM-ELDL  227 (284)
T ss_pred             cC--ccCceehHHhhhcccchHHHHHHHhcCCcEEEEeccCCCCCceEEecCCCCCcccCHHHHHHHHhCCCChH-HHHH
Confidence            86  4899999999999999999999999999999998886 899999999999999999999999999999975 8999


Q ss_pred             HHHHHHcCCCCcccCCCCCCCCCCCc---CccccccCCCCCCChhhHHHHHhhhccCC
Q psy14236        236 KEYLEKQGIRPIQDHGFKKPVLPGRK---KNMNRKKQFKKPRDNEHLADVLENYEAVS  290 (290)
Q Consensus       236 ~~~L~~~Glkp~~~~~~kk~~~~~~~---Kkkkkkr~r~~K~TNtHm~~llkDYs~~~  290 (290)
                      ++||+++||+||++.++++.++++++   +|++++++|++|+|||||. +++||++++
T Consensus       228 e~eL~k~GLkp~~~v~p~~~~~~~~~k~~~Kkk~~~~r~~kitnthl~-~l~d~~~~~  284 (284)
T KOG3095|consen  228 EEELQKQGLKPMKDVDPKKAAPQQRKKDKKKKKFKKTRRNKITNTHLK-ILEDYSSDK  284 (284)
T ss_pred             HHHHHHhCCCcccccchHHhhhhhhhhhhhhhhhcccccchhhhhHHH-HHHhhcccC
Confidence            99999999999998777765453222   2334456688999999999 899998763

>COG5174 TFA2 Transcription initiation factor IIE, beta subunit [Transcription]

Probab=100.00  E-value=1e-57  Score=408.36  Aligned_cols=267  Identities=19%  Similarity=0.321  Sum_probs=214.2

Q ss_pred             HhHHHHHHhhccCCcccccCCCCCCCC--------chh--hhhccCCCCCCCCC-CCCCCCCCCCccccCCCCcchhHHH
Q psy14236          7 RERDLFKKKALSTPTVEKRKAETSKDE--------PWK--AKKAKTSSSSSSSL-SSSLGSSNNMAYKSMSGSSQYKFGV   75 (290)
Q Consensus         7 ~~~~~fk~ra~~~p~ve~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tg~~~~~~t~   75 (290)
                      -+.+|||++..++||+.+.......++        +.+  ....-..+||..++ ..+ .-.-...+++++|.+.|-.++
T Consensus         6 dnlnafkskvksapv~a~~q~kr~asp~~~e~~LnsndghsS~a~s~gs~~~kk~R~~-~~~~~~~q~~d~gv~~H~~s~   84 (285)
T COG5174           6 DNLNAFKSKVKSAPVIAPAQKKRMASPCHFEVGLNSNDGHSSTAWSKGSSPTKKARIP-RMDRDRIQSIDRGVQRHTNSY   84 (285)
T ss_pred             HHHHHHHHHhccCCcccCccccccCCccchhcccccCCCCcccccccCCCcccccccc-chhHhhhccccccccccchHH
Confidence            478999999999999986432100000        000  00000000110010 100 111223688999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee-CCeEEeccCCCCCCHHHHHHHH
Q psy14236         76 LAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE-GNKYIFKPVFKIKDRKGLLKLL  154 (290)
Q Consensus        76 l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p-~~~f~yKP~y~Ik~k~~LL~lL  154 (290)
                      |++|++|||++     +.|++++||.++|++ ++.++.   +  ++|+.+.+|.|++ .+||.|+|.|+|++.++||++|
T Consensus        85 lh~aieylk~~-----~~P~~~eEi~dyls~-~l~~~~---v--~Llkk~~ri~~d~~~~Tf~fkply~irS~~~llk~l  153 (285)
T COG5174          85 LHAAIEYLKQH-----DRPLSFEEIKDYLSI-DLHNNY---V--LLLKKKRRIRIDATHSTFMFKPLYSIRSVEDLLKVL  153 (285)
T ss_pred             HHHHHHHHHHc-----CCcccHHHHHHHhcC-ccchhH---H--HHHhhccCceeccCCceEEeeccccccCHHHHHHHH
Confidence            99999999998     899999999999998 988874   3  4799999999999 6899999999999999999999


Q ss_pred             HhcccCCCCccchhhhHhhhhhHHHHHHHhhhCCcEEEEecCC-CCceEEEecCCCCCCCCCHHHHHHhhhcccCCCChh
Q psy14236        155 KQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPA-DKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDND  233 (290)
Q Consensus       155 ~~~~q~~~~GI~v~dLkD~~p~~~~~I~~Le~e~~Ilvv~~~~-~~~rivf~ND~~~~~~VD~EFk~lW~~v~VP~~de~  233 (290)
                      +.  |.++.||++++|+||||+|...|++||+.++||++++.+ +.|+|||+|+.+|.++||+||+.||++|.||.  -.
T Consensus       154 rs--q~t~~Gls~k~L~Dgwpnv~~~veeLek~~eIliLrt~kDg~p~~vW~n~~n~~c~vD~ef~~~W~~V~ip~--~~  229 (285)
T COG5174         154 RS--QGTEEGLSMKKLMDGWPNVVPFVEELEKSNEILILRTDKDGSPVVVWNNTQNLECPVDPEFKSLWNQVRIPT--YH  229 (285)
T ss_pred             Hh--hcccccccHHHhhcCCCcccHHHHHHhhcCcEEEEeecCCCCceEEEeCCCCcCCCCCHHHHHHHHhCCCch--HH
Confidence            99  689999999999999999999999999999999999666 77999999999999999999999999999994  47


Q ss_pred             hHHHHHHHcCCCCcccCCCCCCCCCCCcCccccccCCCCCCChhhHHHHHhhhccCC
Q psy14236        234 KIKEYLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS  290 (290)
Q Consensus       234 di~~~L~~~Glkp~~~~~~kk~~~~~~~Kkkkkkr~r~~K~TNtHm~~llkDYs~~~  290 (290)
                      ||.++|..+||+|+++++-.+..+.++-|+ +++++|++|||||||.|||.|||++.
T Consensus       230 dL~reL~~~GLKptsvdp~t~KR~t~~ik~-kk~~~RkgkITNTH~~gil~dys~~~  285 (285)
T COG5174         230 DLIRELNTAGLKPTSVDPNTKKRPTIKIKK-KKRSRRKGKITNTHVKGILLDYSQDE  285 (285)
T ss_pred             HHHHHHHhcCCCccccCcchhccccccccc-cccccccccccchhhhhhhccccccC
Confidence            899999999999999887432223333333 44678999999999999999999873

>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

Probab=99.84  E-value=3.1e-21  Score=147.80  Aligned_cols=75  Identities=55%  Similarity=0.858  Sum_probs=69.6

Q ss_pred             CCCcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCCCC
Q psy14236         66 SGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIK  145 (290)
Q Consensus        66 tg~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~Ik  145 (290)
                      ||+|.|+||||++||+|||+|||    +|+|++||++||+++|++....+||+++++.+||++... +|||+|||+|+||
T Consensus         1 tg~g~~~~t~l~~aV~ymK~r~~----~Plt~~EIl~~ls~~d~~~~~~~~L~~~~~~~n~~~~~~-~~tf~fkP~y~Ir   75 (75)
T cd07977           1 TGSGTHVFTQLAKIVDYMKKRHQ----HPLTLDEILDYLSLLDIGPKLKEWLKSEALVNNPKIDPK-DGTFSFKPKYNIR   75 (75)
T ss_pred             CCCCcchhhhHHHHHHHHHhcCC----CCccHHHHHHHHhccCccHHHHHHHHhhhhccCceeccC-CCEEEeccCCCCC
Confidence            69999999999999999999953    999999999999966999999899988899999998887 8999999999996

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional

>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH

Probab=99.80  E-value=5.7e-20  Score=137.21  Aligned_cols=64  Identities=53%  Similarity=0.791  Sum_probs=49.0

Q ss_pred             chhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCC-eEEeccCCCC
Q psy14236         70 QYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGN-KYIFKPVFKI  144 (290)
Q Consensus        70 ~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~-~f~yKP~y~I  144 (290)
                      +|.||||++||+|||++     ++|+|++||+++|+ +|++....+     .|++||||+|+|+| +|+|+|+|||
T Consensus         1 ~~~~tql~~~VeymK~r-----~~Plt~~eI~d~l~-~d~~~~~~~-----~Lk~npKI~~d~~~~~f~fkp~ynI   65 (65)
T PF02186_consen    1 SHKFTQLAKAVEYMKKR-----DHPLTLEEILDYLS-LDIGKKLKQ-----WLKNNPKIEYDPDGNTFSFKPKYNI   65 (65)
T ss_dssp             -TTHHHHHHHHHHHHHH------S-B-HHHHHHHHT-SSS-HHHHH-----HHHH-TTEEEE-TT-CEEE--TTT-
T ss_pred             CchhhHHHHHHHHHHhc-----CCCcCHHHHHHHHc-CCCCHHHHH-----HHHcCCCEEEecCCCEEEeccCCCC
Confidence            47899999999999999     89999999999999 599876544     57799999999976 9999999997

In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.

>PHA02943 hypothetical protein; Provisional

Probab=93.27  E-value=0.12  Score=45.03  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCCCCCCHHHHHH
Q psy14236        146 DRKGLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKL  221 (290)
Q Consensus       146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~~~VD~EFk~l  221 (290)
                      .++++|++| +.     |+.+.++|.+    ||-.+.-.|.-||.||.|.-|+.  ++..+.+.||..+..-|++=|+++
T Consensus        12 R~~eILE~L-k~-----G~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~~--G~~tyw~l~~day~~~v~~~~Rel   83 (165)
T PHA02943         12 RMIKTLRLL-AD-----GCKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVEI--GRAAIWCLDEDAYTNLVFEIKREL   83 (165)
T ss_pred             HHHHHHHHH-hc-----CCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEee--cceEEEEEChHHHHHHHHHHHHHH
Confidence            367899999 42     6677777665    78899999999999999987753  455666667766666699999999


Q ss_pred             hhhc
Q psy14236        222 WRSI  225 (290)
Q Consensus       222 W~~v  225 (290)
                      |+=|
T Consensus        84 wrlv   87 (165)
T PHA02943         84 WRLV   87 (165)
T ss_pred             HHHH
Confidence            9865

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=90.34  E-value=0.49  Score=37.48  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEE
Q psy14236        147 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEII  191 (290)
Q Consensus       147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Il  191 (290)
                      .+.+|++|+.. .....||.|++|....    ..+.++|+.|..+|.|+
T Consensus        49 ~~~Vl~~i~~~-~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY   96 (102)
T PF08784_consen   49 QDKVLNFIKQQ-PNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIY   96 (102)
T ss_dssp             HHHHHHHHHC-----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHhc-CCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEe
Confidence            46788999984 3567899999999887    45889999999999998

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.50  E-value=4  Score=35.28  Aligned_cols=94  Identities=22%  Similarity=0.358  Sum_probs=64.8

Q ss_pred             HHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCC-e--EEeccC-CCCCCHHHHHH
Q psy14236         77 AKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGN-K--YIFKPV-FKIKDRKGLLK  152 (290)
Q Consensus        77 ~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~-~--f~yKP~-y~Ik~k~~LL~  152 (290)
                      ..|++||+..     +.|++..||.+.|.- .++...-+-.. +.|...-+|..-.-| .  |.+.-. +.+-+.++|-.
T Consensus         4 ~~Il~y~~~q-----NRPys~~di~~nL~~-~~~K~~v~k~L-d~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~   76 (169)
T PF07106_consen    4 DAILEYMKEQ-----NRPYSAQDIFDNLHN-KVGKTAVQKAL-DSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAE   76 (169)
T ss_pred             HHHHHHHHHc-----CCCCcHHHHHHHHHh-hccHHHHHHHH-HHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHH
Confidence            5689999997     899999999999965 55554433333 789999999988655 3  333322 45556666444


Q ss_pred             HHHhcccCCCCccchhhhHhhhhhHHHHHHHhhhC
Q psy14236        153 LLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQ  187 (290)
Q Consensus       153 lL~~~~q~~~~GI~v~dLkD~~p~~~~~I~~Le~e  187 (290)
                      +=..          +.+|++-.......+..|+++
T Consensus        77 ld~e----------i~~L~~el~~l~~~~k~l~~e  101 (169)
T PF07106_consen   77 LDAE----------IKELREELAELKKEVKSLEAE  101 (169)
T ss_pred             HHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            3333          677777777777777777643

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues

Probab=85.76  E-value=0.62  Score=41.83  Aligned_cols=85  Identities=12%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceE--EeeCCeEEeccCCCCCCHHHHH
Q psy14236         74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIE--VIEGNKYIFKPVFKIKDRKGLL  151 (290)
Q Consensus        74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~--~~p~~~f~yKP~y~Ik~k~~LL  151 (290)
                      ..|...|+|+|.+      .-+.++||..++|+ ...... .-+  ..|.....|.  +|..|+|.|...--+   ..+-
T Consensus        99 ~lL~~Fi~yIK~~------Kvv~ledla~~f~l-~t~~~i-~ri--~~L~~~g~ltGv~DdrGkfIyIs~eE~---~~va  165 (188)
T PF09756_consen   99 QLLQEFINYIKEH------KVVNLEDLAAEFGL-RTQDVI-NRI--QELEAEGRLTGVIDDRGKFIYISEEEM---EAVA  165 (188)
T ss_dssp             -HHHHHHHHHHH-------SEE-HHHHHHHH-S--HHHHH-HHH--HHHHHHSSS-EEE-TT--EEE-------------
T ss_pred             HHHHHHHHHHHHc------ceeeHHHHHHHcCC-CHHHHH-HHH--HHHHHCCCceeeEcCCCCeEEecHHHH---HHHH
Confidence            3799999999996      78999999999987 333222 234  3455555544  343599999987544   3455


Q ss_pred             HHHHhcccCCCCccchhhhHhhhhh
Q psy14236        152 KLLKQHDLKGIGGILLDDVRESLPH  176 (290)
Q Consensus       152 ~lL~~~~q~~~~GI~v~dLkD~~p~  176 (290)
                      .+|+++     |-|++.+|......
T Consensus       166 ~fi~~r-----GRvsi~el~~~~N~  185 (188)
T PF09756_consen  166 KFIKQR-----GRVSISELAQESNR  185 (188)
T ss_dssp             -------------------------
T ss_pred             HHHHHc-----CCccHHHHHHHHHh
Confidence            677774     78999999876543

They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.

>KOG3054|consensus

Probab=82.76  E-value=2.5  Score=39.70  Aligned_cols=90  Identities=18%  Similarity=0.328  Sum_probs=59.1

Q ss_pred             cchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccC--CCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCCCCC
Q psy14236         69 SQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQL--DVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKD  146 (290)
Q Consensus        69 ~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~--di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~Ik~  146 (290)
                      |..--..|...|+|+|+      +..+.++||..+.++-  |.....+.+|. +-|  -.-| .|..|+|.|.+.-.   
T Consensus       195 ~eeqdnll~eFv~YIk~------nKvV~ledLas~f~Lrtqd~inriq~~l~-eg~--ltGV-mDDRGKfIYIS~eE---  261 (299)
T KOG3054|consen  195 GEEQDNLLSEFVEYIKK------NKVVPLEDLASEFGLRTQDSINRIQELLA-EGL--LTGV-MDDRGKFIYISMEE---  261 (299)
T ss_pred             cchHHHHHHHHHHHHHh------cCeeeHHHHHHHhCccHHHHHHHHHHHHH-hhh--heee-ecCCCceEEecHHH---
Confidence            33344789999999999      4799999999999872  44444444444 333  1122 23259999975411   


Q ss_pred             HHHHHHHHHhcccCCCCccchhhhHhhhhh
Q psy14236        147 RKGLLKLLKQHDLKGIGGILLDDVRESLPH  176 (290)
Q Consensus       147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~p~  176 (290)
                      -..+-+|++++     |-||+.+|.+.-.+
T Consensus       262 l~AVAkfIkqr-----GRVSIaelAe~SN~  286 (299)
T KOG3054|consen  262 LAAVAKFIKQR-----GRVSIAELAEKSNQ  286 (299)
T ss_pred             HHHHHHHHHHc-----CceeHHHHHHhhcc
Confidence            12334567774     78999999887554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
1d8j_A	81	Solution Structure Of The Central Core Domain Of Tf		1e-26

>pdb|1D8J|A Chain A, Solution Structure Of The Central Core Domain Of Tfiie Beta Length = 81

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 64  SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQ 123
           ++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET  LD+G K K WL TEAL 
Sbjct: 1   ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60
Query: 124 NNPKIEVIEGNKYIFKPVFKIK 145
           NNPKIEVI+G KY FKP + ++
Sbjct: 61  NNPKIEVIDG-KYAFKPKYNVR 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1d8j_A	81	General transcription factor TFIIE-beta; winged he	8e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A Length = 81

 Score =  133 bits (335), Expect = 8e-40
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)

Query: 64  SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQ 123
           ++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET  LD+G K K WL TEAL 
Sbjct: 1   ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60

Query: 124 NNPKIEVIEGNKYIFKPVFKIK 145
           NNPKIEVI+G KY FKP + ++
Sbjct: 61  NNPKIEVIDG-KYAFKPKYNVR 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 41/341 (12%), Positives = 89/341 (26%), Gaps = 94/341 (27%)

Query: 1   MDPALLRERDLFKKKALSTPTVEKRKAETS--KDEPWKAKKAKTSSSSSSSLSSSLGSSN 58
              A+     LF         + ++  E     +  +     KT     S ++       
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 59  NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKV----- 113
           +  Y      +Q          K+   R Q          ++     +L     V     
Sbjct: 117 DRLY----NDNQ-------VFAKYNVSRLQ-------PYLKLRQALLELRPAKNVLIDGV 158

Query: 114 ----KIWLSTEALQNNPKIEVIEGNKY--------------------------------- 136
               K W++ +   +      ++   +                                 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 137 ----IFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIY 192
               I   +  I+    L +LLK    +    ++L +V+ +     KA    +L  +I+ 
Sbjct: 219 HSSNIKLRIHSIQAE--LRRLLKSKPYE-NCLLVLLNVQNA-----KAWNAFNLSCKILL 270

Query: 193 VTR--------PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGI 244
            TR         A     +  +  S  L  DE    L + +         +    E    
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPR--EVLTT 325

Query: 245 RPIQDHGFKKPVLPGRKKNM-NRKKQFKKPRDNEHLADVLE 284
            P      +  ++    ++       +K   + + L  ++E
Sbjct: 326 NP-----RRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 46/320 (14%), Positives = 91/320 (28%), Gaps = 116/320 (36%)

Query: 2   DPALLRERDLFKKKALSTPTVEKRKAETSKDEP-WKAKKAKTSSSSSSSLSSSLGSSNNM 60
            P+++    + ++  L        K   S+ +P  K ++A         L   L  + N+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---------LLE-LRPAKNV 153

Query: 61  AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS-- 118
               + G      G   K                + +D  L    Q  +  K+  WL+  
Sbjct: 154 LIDGVLG-----SG---KTW--------------VALDVCLSYKVQCKMDFKI-FWLNLK 190

Query: 119 --------TEALQN------NPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGG 164
                    E LQ              + +  I   +  I+    L +LLK    +    
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYE-NCL 247

Query: 165 ILLDDVRESLPHCEKALKHLSLQNEIIYVTR----------------PADKRKVMFYNDK 208
           ++L +V+ +     KA    +L  +I+  TR                  D   +    D+
Sbjct: 248 LVLLNVQNA-----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 209 SAQL---DLDEDFQKL----------------------------WR-----------SIS 226
              L    LD   Q L                            W+             S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 227 VDGMDNDKIKEYLEKQGIRP 246
           ++ ++  + ++  ++  + P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
1d8j_A	81	General transcription factor TFIIE-beta; winged he	99.95
2dk8_A	81	DNA-directed RNA polymerase III 39 kDa polypeptide	89.08
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	84.15
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	83.13
1wi9_A	72	Protein C20ORF116 homolog; helix-turn-helix motif,	80.85

>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A

Probab=99.95  E-value=1.6e-28  Score=188.27  Aligned_cols=81  Identities=69%  Similarity=1.075  Sum_probs=78.1

Q ss_pred             cCCCCcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCC
Q psy14236         64 SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFK  143 (290)
Q Consensus        64 ~~tg~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~  143 (290)
                      +++|+|+|+||||++||+|||+|||+|+++|+|++||+++|+++|++...++||+.|||++||||+|. ||+|+|||+|+
T Consensus         1 ~~~~~s~~~f~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~-dgkf~fkP~y~   79 (81)
T 1d8j_A            1 ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYN   79 (81)
T ss_dssp             CTTSCSCTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC-SSSEEECCTTT
T ss_pred             CCCcccccceehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEe-CCceeccCCcC
Confidence            36899999999999999999999999999999999999999999999999999977999999999999 99999999999


Q ss_pred             CC
Q psy14236        144 IK  145 (290)
Q Consensus       144 Ik  145 (290)
                      ||
T Consensus        80 ik   81 (81)
T 1d8j_A           80 VR   81 (81)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85

Probab=89.08  E-value=0.85  Score=34.54  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEecC
Q psy14236        147 RKGLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEIIYVTRP  196 (290)
Q Consensus       147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~~~  196 (290)
                      .+.+|++++.++    .||+-++|....|+     ...+|+.|-.+++|-++...
T Consensus        16 e~~IL~l~~~~P----~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~   66 (81)
T 2dk8_A           16 ENRIIELCHQFP----HGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN   66 (81)
T ss_dssp             HHHHHHHHHHCS----SCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred             HHHHHHHHHhCC----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            456999999986    79999999999999     55889999999999988543

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=84.15  E-value=2.4  Score=31.68  Aligned_cols=51  Identities=6%  Similarity=0.057  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHhcccCCCCccchhhhHhhh-----hhHHHHHHHhhhCCcEEEEecCCCCceEEEe
Q psy14236        146 DRKGLLKLLKQHDLKGIGGILLDDVRESL-----PHCEKALKHLSLQNEIIYVTRPADKRKVMFY  205 (290)
Q Consensus       146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~~-----p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~  205 (290)
                      .++.+|.+|+++     |+++..+|.+..     ++|-..|..|+++|.|...  ..+.|  +|.
T Consensus        12 ~~~~IL~~Lk~~-----g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP--~w~   67 (79)
T 1xmk_A           12 IKEKICDYLFNV-----SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPP--IWH   67 (79)
T ss_dssp             HHHHHHHHHHHT-----CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSC--EEE
T ss_pred             HHHHHHHHHHHc-----CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCC--CeE
Confidence            468899999996     789999988765     3788999999999998833  22445  664

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=83.13  E-value=3.6  Score=29.68  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCC
Q psy14236        147 RKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDK  208 (290)
Q Consensus       147 k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~  208 (290)
                      ...+|.+|...     +++++.||.+.    -+.+-..|+.|+++|-|.......+....+..++.
T Consensus         2 r~~Il~~L~~~-----~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~   62 (81)
T 2htj_A            2 KNEILEFLNRH-----NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE   62 (81)
T ss_dssp             HHHHHHHHHHS-----CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred             HHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence            46789999874     57999998885    46688999999999987654443344444445544

>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47

Probab=80.85  E-value=0.99  Score=33.50  Aligned_cols=58  Identities=10%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceE--EeeCCeEEeccC
Q psy14236         74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIE--VIEGNKYIFKPV  141 (290)
Q Consensus        74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~--~~p~~~f~yKP~  141 (290)
                      ..|...|+|+|.+      +-+.++||..++++ ....-. .-+  +.|..+-+|.  +|..|+|-|...
T Consensus         7 ~ll~~Fi~yIk~~------Kvv~LedLA~~F~l-~t~~~i-~RI--~~Le~~g~ltGViDDRGKfIyIs~   66 (72)
T 1wi9_A            7 GFLTEFINYIKKS------KVVLLEDLAFQMGL-RTQDAI-NRI--QDLLTEGTLTGVIDDRGKFIYITP   66 (72)
T ss_dssp             CHHHHHHHHHHHC------SEECHHHHHHHHCS-CHHHHH-HHH--HHHHHHSSSCEEECTTCCEEECCC
T ss_pred             HHHHHHHHHHHHc------CeeeHHHHHHHhCC-ChHHHH-HHH--HHHHHCCCeEEEEeCCCCEEEecH
Confidence            3478889999996      79999999999997 433333 334  4677777765  443699999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1d8ja_	81	a.4.5.18 (A:) The central core domain of TFIIE bet	1e-43

>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: The central core domain of TFIIE beta
domain: The central core domain of TFIIE beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 1e-43
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)

Query: 64  SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQ 123
           ++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET  LD+G K K WL TEAL 
Sbjct: 1   ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60

Query: 124 NNPKIEVIEGNKYIFKPVFKIK 145
           NNPKIEVI+G KY FKP + ++
Sbjct: 61  NNPKIEVIDG-KYAFKPKYNVR 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1d8ja_	81	The central core domain of TFIIE beta {Human (Homo	99.96
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	92.0
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	87.29
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	83.55
d1d5ya1	54	Rob transcription factor, N-terminal domain {Esche	82.5
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	81.31

>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: The central core domain of TFIIE beta
domain: The central core domain of TFIIE beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.1e-31  Score=196.00  Aligned_cols=81  Identities=69%  Similarity=1.075  Sum_probs=79.1

Q ss_pred             cCCCCcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCC
Q psy14236         64 SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFK  143 (290)
Q Consensus        64 ~~tg~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~  143 (290)
                      |+||++++.|++|++||+|||+|||+|+++|||++||+++|+++||+...+.||++|||.|||||++. ||+|.|||+|+
T Consensus         1 ~~sgss~~~FgvLaKIV~~MK~RHq~g~~hPLtLeEiLDEt~~~Di~~~~k~WL~~EAL~nNPKi~v~-dgKf~Fkp~Y~   79 (81)
T d1d8ja_           1 ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYN   79 (81)
T ss_dssp             CTTSCSCTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC-SSSEEECCTTT
T ss_pred             CcCCcccccchHHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhccccHHHHHHHHhhhcccCCceeec-CCeeeecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             CC
Q psy14236        144 IK  145 (290)
Q Consensus       144 Ik  145 (290)
                      ||
T Consensus        80 ik   81 (81)
T d1d8ja_          80 VR   81 (81)
T ss_dssp             CC
T ss_pred             cC
Confidence            96

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.1  Score=36.69  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=36.8

Q ss_pred             HHHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEE
Q psy14236        148 KGLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEII  191 (290)
Q Consensus       148 ~~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Il  191 (290)
                      ..+|++|+.+.  +..||.+.+|+...++     +.++|+.|..+|-|+
T Consensus         9 ~~V~~~i~s~~--~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IY   55 (69)
T d1dpua_           9 NQVLNLIKACP--RPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY   55 (69)
T ss_dssp             HHHHHHHHHCC--CTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHhCC--CccCcCHHHHHHHccCCCHHHHHHHHHHHHhCCcee
Confidence            57899999974  6799999999988763     789999999999999

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.29  E-value=0.4  Score=33.33  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEecc
Q psy14236         74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKP  140 (290)
Q Consensus        74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP  140 (290)
                      .....|++++-..     +.|+++.||...+++ ..+.-+ ..|  ..|..+-=|+.+++|+|.-=|
T Consensus         5 ~r~l~IL~~~a~~-----~~~~s~~eia~~~~~-~~st~~-rll--~tL~~~g~l~~~~~g~y~lG~   62 (75)
T d1mkma1           5 KKAFEILDFIVKN-----PGDVSVSEIAEKFNM-SVSNAY-KYM--VVLEEKGFVLRKKDKRYVPGY   62 (75)
T ss_dssp             HHHHHHHHHHHHC-----SSCBCHHHHHHHTTC-CHHHHH-HHH--HHHHHTTSEEECTTSCEEECT
T ss_pred             HHHHHHHHHHHhC-----CCCCCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCCEEECCCCCEeecH
Confidence            3456788888876     689999999999977 544444 455  589999999999888876544

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.55  E-value=0.52  Score=34.46  Aligned_cols=66  Identities=11%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             CccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCC---CCceEEEecCCCCCCCCCHHHHHHhhhcccC
Q psy14236        163 GGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPA---DKRKVMFYNDKSAQLDLDEDFQKLWRSISVD  228 (290)
Q Consensus       163 ~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~---~~~rivf~ND~~~~~~VD~EFk~lW~~v~VP  228 (290)
                      |++++.||.+..    +.+-..|+.|++.|-|.-...+.   +.+..+|.......-.+.++|.++++.+.+-
T Consensus        35 ~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~~~~~~i~~~~~~~~~k~~~~  107 (109)
T d2d1ha1          35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLLNCAKRMELA  107 (109)
T ss_dssp             SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEeecCCCCCceeEEEeeCCHHHHHHHHHHHHHHHHHHHHh
Confidence            569999988854    67889999999999887666554   3455566555555556888899988887653

>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: Rob transcription factor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=0.43  Score=30.76  Aligned_cols=30  Identities=17%  Similarity=0.479  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236         73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ  106 (290)
Q Consensus        73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~  106 (290)
                      ...+..|++||.++.    ..|+|++||.+.+++
T Consensus         2 ~~ii~~i~~yi~~~~----~~~itl~~lA~~~~~   31 (54)
T d1d5ya1           2 AGIIRDLLIWLEGHL----DQPLSLDNVAAKAGY   31 (54)
T ss_dssp             HHHHHHHHHHHHTTS----SSSCCCHHHHTTTSS
T ss_pred             HHHHHHHHHHHHHcc----CCCCCHHHHHHHHCc
Confidence            367899999999985    789999999988765

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=81.31  E-value=0.58  Score=30.05  Aligned_cols=29  Identities=10%  Similarity=0.377  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236         74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ  106 (290)
Q Consensus        74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~  106 (290)
                      ..|..|++||.++.    ..|+|++||...+++
T Consensus         3 ~~i~~v~~yI~~~~----~~~~tl~~lA~~~~~   31 (54)
T d1bl0a1           3 ITIHSILDWIEDNL----ESPLSLEKVSERSGY   31 (54)
T ss_dssp             HHHHHHHHHHHTTT----TSCCCCHHHHHHSSS
T ss_pred             HHHHHHHHHHHhcc----CCCCCHHHHHHHHCc
Confidence            45889999999996    789999999988866