Psyllid ID: psy14237

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVGGKSEITVGSSS
cccccccccccHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHcccccccccccccHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEccccc
HHHHccccccHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccHHHcccccccEEEEEEccccccccccccEEEEEcccccccccEEEEcccc
mlnnfpnhlhpmsQFSAAITALNSESKFAKayndgvhkskYWEYVYEDSMDLIAKLPVVAATIYRntfqggkgigaidtnkdwsanftsmlgfdnhqFTELMRLYLTIhsdheggnvsAHTVHLVGsalsdpylsfaagmnglagplhglaNQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLksgqvvpgyghavlrktdprytcqrefaqkhlpddslFKLVSQVYKvvppvlietgkvknpwpnvdahsGVLLQYyglkemnyYTVLFGVSRALGVLASLIWDRalglpierpkslstndLVKQYSkikstpggnrtLGLALIgqthyqrtnhptkltirpanlvggkseitvgsss
mlnnfpnhlhPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTlksgqvvpgyghaVLRKTDPRYTCQREFAqkhlpddslFKLVSQVYKVVPPVLIetgkvknpwpnvdAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGlpierpkslstndlvkqyskikstpggnrTLGLALIGQTHyqrtnhptkltirpanlvggkseitvgsss
MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVGGKSEITVGSSS
******************ITAL***SKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER********LVK*Y*********NRTLGLALIGQTHYQRTNHPTKLTIR*****************
MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY*********************************************I******
MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVGGKS********
MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVGGKS********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVGGKSEITVGSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q16P20467 Probable citrate synthase N/A N/A 0.866 0.668 0.839 1e-159
Q17GM7467 Probable citrate synthase N/A N/A 0.85 0.655 0.852 1e-159
Q0QHL3465 Probable citrate synthase N/A N/A 0.861 0.666 0.845 1e-158
Q9W401464 Probable citrate synthase yes N/A 0.861 0.668 0.838 1e-158
Q6S9V7469 Citrate synthase, mitocho N/A N/A 0.847 0.650 0.783 1e-148
Q6S9V8469 Citrate synthase, mitocho N/A N/A 0.847 0.650 0.783 1e-148
Q6S9V9469 Citrate synthase, mitocho N/A N/A 0.847 0.650 0.783 1e-148
Q6S9V6469 Citrate synthase, mitocho N/A N/A 0.847 0.650 0.780 1e-148
Q7ZVY5468 Citrate synthase, mitocho yes N/A 0.847 0.651 0.786 1e-148
Q6S9V5469 Citrate synthase, mitocho N/A N/A 0.847 0.650 0.777 1e-147
>sp|Q16P20|CISY2_AEDAE Probable citrate synthase 2, mitochondrial OS=Aedes aegypti GN=AAEL011789 PE=3 SV=1 Back     alignment and function desciption
 Score =  562 bits (1449), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 262/312 (83%), Positives = 288/312 (92%)

Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           MLNN P  LHPMSQ S A+TALN ESK+AKAY++GVHKSKYWEYVYEDSMDLIAKLPVVA
Sbjct: 156 MLNNMPTTLHPMSQLSCAVTALNHESKYAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVVA 215

Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           ATIYRNT++ GKGIGAID  KDWSANFT MLG+++ QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 216 ATIYRNTYRDGKGIGAIDPKKDWSANFTKMLGYEDEQFTELMRLYLTIHSDHEGGNVSAH 275

Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVL+WL+KL++++GDN SE+K+K+FIW
Sbjct: 276 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLVWLQKLRKELGDNASEDKVKDFIW 335

Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
            TLKSGQVVPGYGHAVLRKTDPRYTCQREFA KHLP+D LF+LVS +YKVVPP+L E GK
Sbjct: 336 KTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFQLVSNIYKVVPPILTELGK 395

Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
           VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASL+WDRALGLPIERPKS+S
Sbjct: 396 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSMS 455

Query: 301 TNDLVKQYSKIK 312
           T+ L+K     K
Sbjct: 456 TDGLMKAVGAAK 467

Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|Q17GM7|CISY1_AEDAE Probable citrate synthase 1, mitochondrial OS=Aedes aegypti GN=AAEL002956 PE=3 SV=1 Back     alignment and function description
>sp|Q0QHL3|CISY_GLOMM Probable citrate synthase, mitochondrial OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q9W401|CISY_DROME Probable citrate synthase, mitochondrial OS=Drosophila melanogaster GN=kdn PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V7|CISY_KATPE Citrate synthase, mitochondrial OS=Katsuwonus pelamis GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V8|CISY_THUOB Citrate synthase, mitochondrial OS=Thunnus obesus GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V9|CISY_THUAL Citrate synthase, mitochondrial OS=Thunnus albacares GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V6|CISY_XIPGL Citrate synthase, mitochondrial OS=Xiphias gladius GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q7ZVY5|CISY_DANRE Citrate synthase, mitochondrial OS=Danio rerio GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V5|CISY_TETAD Citrate synthase, mitochondrial OS=Tetrapturus audax GN=cs PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
312382838 708 hypothetical protein AND_04269 [Anophele 0.869 0.442 0.843 1e-160
357612136 465 putative citrate synthase [Danaus plexip 0.861 0.666 0.858 1e-159
195439386 464 GK16526 [Drosophila willistoni] gi|19416 0.861 0.668 0.854 1e-159
158300600 466 AGAP012048-PA [Anopheles gambiae str. PE 0.861 0.665 0.848 1e-158
194768174 535 GF19352 [Drosophila ananassae] gi|190623 0.861 0.579 0.848 1e-158
91083623 466 PREDICTED: similar to citrate synthase [ 0.85 0.656 0.852 1e-158
157130536 467 citrate synthase [Aedes aegypti] gi|1571 0.866 0.668 0.839 1e-158
157133341 467 citrate synthase [Aedes aegypti] gi|1220 0.85 0.655 0.852 1e-158
195469950 532 GE16750 [Drosophila yakuba] gi|194187423 0.861 0.582 0.841 1e-157
170072254369 citrate synthase, mitochondrial [Culex q 0.861 0.840 0.845 1e-157
>gi|312382838|gb|EFR28146.1| hypothetical protein AND_04269 [Anopheles darlingi] Back     alignment and taxonomy information
 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/313 (84%), Positives = 290/313 (92%)

Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           MLNN P  LHPMSQ S A+TALN ESKFAKAY++GVHKSKYWEYVYEDSMDLIAKLPV+A
Sbjct: 185 MLNNMPTTLHPMSQLSCAVTALNHESKFAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVIA 244

Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           ATIYRNT++ GKGIGAID  KDWSANFT MLG+++ +FTELMRLYLTIHSDHEGGNVSAH
Sbjct: 245 ATIYRNTYRDGKGIGAIDPKKDWSANFTKMLGYEDEKFTELMRLYLTIHSDHEGGNVSAH 304

Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVL+WL+KL++++GDN SE+K+KEFIW
Sbjct: 305 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLVWLQKLRKELGDNASEDKVKEFIW 364

Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
            TLKSGQVVPGYGHAVLRKTDPRYTCQREFA KHLP+D LF LVS +YKVVPP+L E GK
Sbjct: 365 KTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFGLVSNIYKVVPPILTELGK 424

Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
           VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASL+WDRALGLPIERPKS+S
Sbjct: 425 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSMS 484

Query: 301 TNDLVKQYSKIKS 313
           T+ L+K  SK+ S
Sbjct: 485 TDGLIKATSKMAS 497

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357612136|gb|EHJ67827.1| putative citrate synthase [Danaus plexippus] Back     alignment and taxonomy information
>gi|195439386|ref|XP_002067612.1| GK16526 [Drosophila willistoni] gi|194163697|gb|EDW78598.1| GK16526 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|158300600|ref|XP_320478.4| AGAP012048-PA [Anopheles gambiae str. PEST] gi|157013238|gb|EAA00454.5| AGAP012048-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|194768174|ref|XP_001966188.1| GF19352 [Drosophila ananassae] gi|190623073|gb|EDV38597.1| GF19352 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|91083623|ref|XP_970124.1| PREDICTED: similar to citrate synthase [Tribolium castaneum] gi|270006831|gb|EFA03279.1| hypothetical protein TcasGA2_TC013214 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157130536|ref|XP_001655738.1| citrate synthase [Aedes aegypti] gi|157130538|ref|XP_001655739.1| citrate synthase [Aedes aegypti] gi|122067459|sp|Q16P20.1|CISY2_AEDAE RecName: Full=Probable citrate synthase 2, mitochondrial; Flags: Precursor gi|108871873|gb|EAT36098.1| AAEL011789-PB [Aedes aegypti] gi|108871874|gb|EAT36099.1| AAEL011789-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157133341|ref|XP_001656210.1| citrate synthase [Aedes aegypti] gi|122095223|sp|Q17GM7.1|CISY1_AEDAE RecName: Full=Probable citrate synthase 1, mitochondrial; Flags: Precursor gi|108881547|gb|EAT45772.1| AAEL002956-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195469950|ref|XP_002099899.1| GE16750 [Drosophila yakuba] gi|194187423|gb|EDX01007.1| GE16750 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|170072254|ref|XP_001870133.1| citrate synthase, mitochondrial [Culex quinquefasciatus] gi|167868498|gb|EDS31881.1| citrate synthase, mitochondrial [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
UNIPROTKB|Q16P20467 AAEL011789 "Probable citrate s 0.866 0.668 0.839 2.5e-145
UNIPROTKB|Q17GM7467 AAEL002956 "Probable citrate s 0.85 0.655 0.852 3.2e-145
UNIPROTKB|Q0QHL3465 Q0QHL3 "Probable citrate synth 0.861 0.666 0.845 7.5e-144
FB|FBgn0261955464 kdn "knockdown" [Drosophila me 0.861 0.668 0.838 1.2e-143
UNIPROTKB|Q6S9V7469 cs "Citrate synthase, mitochon 0.847 0.650 0.783 2e-134
UNIPROTKB|Q6S9V6469 cs "Citrate synthase, mitochon 0.847 0.650 0.780 2.6e-134
UNIPROTKB|Q6S9V8469 cs "Citrate synthase, mitochon 0.847 0.650 0.783 2.6e-134
UNIPROTKB|Q6S9V9469 cs "Citrate synthase, mitochon 0.847 0.650 0.783 2.6e-134
ZFIN|ZDB-GENE-030131-1058468 cs "citrate synthase" [Danio r 0.847 0.651 0.786 5.4e-134
UNIPROTKB|B4DJV2453 CS "Citrate synthase" [Homo sa 0.85 0.675 0.784 6.9e-134
UNIPROTKB|Q16P20 AAEL011789 "Probable citrate synthase 2, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 262/312 (83%), Positives = 288/312 (92%)

Query:     1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
             MLNN P  LHPMSQ S A+TALN ESK+AKAY++GVHKSKYWEYVYEDSMDLIAKLPVVA
Sbjct:   156 MLNNMPTTLHPMSQLSCAVTALNHESKYAKAYSEGVHKSKYWEYVYEDSMDLIAKLPVVA 215

Query:    61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
             ATIYRNT++ GKGIGAID  KDWSANFT MLG+++ QFTELMRLYLTIHSDHEGGNVSAH
Sbjct:   216 ATIYRNTYRDGKGIGAIDPKKDWSANFTKMLGYEDEQFTELMRLYLTIHSDHEGGNVSAH 275

Query:   121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
             TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVL+WL+KL++++GDN SE+K+K+FIW
Sbjct:   276 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLVWLQKLRKELGDNASEDKVKDFIW 335

Query:   181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
              TLKSGQVVPGYGHAVLRKTDPRYTCQREFA KHLP+D LF+LVS +YKVVPP+L E GK
Sbjct:   336 KTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFQLVSNIYKVVPPILTELGK 395

Query:   241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
             VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASL+WDRALGLPIERPKS+S
Sbjct:   396 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLVWDRALGLPIERPKSMS 455

Query:   301 TNDLVKQYSKIK 312
             T+ L+K     K
Sbjct:   456 TDGLMKAVGAAK 467
GO:0004108 "citrate (Si)-synthase activity" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=ISS
UNIPROTKB|Q17GM7 AAEL002956 "Probable citrate synthase 1, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QHL3 Q0QHL3 "Probable citrate synthase, mitochondrial" [Glossina morsitans morsitans (taxid:37546)] Back     alignment and assigned GO terms
FB|FBgn0261955 kdn "knockdown" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V7 cs "Citrate synthase, mitochondrial" [Katsuwonus pelamis (taxid:8226)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V6 cs "Citrate synthase, mitochondrial" [Xiphias gladius (taxid:8245)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V8 cs "Citrate synthase, mitochondrial" [Thunnus obesus (taxid:8241)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V9 cs "Citrate synthase, mitochondrial" [Thunnus albacares (taxid:8236)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1058 cs "citrate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DJV2 CS "Citrate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9W401CISY_DROME2, ., 3, ., 3, ., 10.83870.86110.6681yesN/A
Q6S9V5CISY_TETAD2, ., 3, ., 3, ., 10.77700.84720.6503N/AN/A
Q6S9V7CISY_KATPE2, ., 3, ., 3, ., 10.78360.84720.6503N/AN/A
Q6S9V6CISY_XIPGL2, ., 3, ., 3, ., 10.78030.84720.6503N/AN/A
P23007CISY_CHICK2, ., 3, ., 3, ., 10.75080.84720.7043yesN/A
Q29RK1CISY_BOVIN2, ., 3, ., 3, ., 10.77450.850.6566yesN/A
Q6S9V9CISY_THUAL2, ., 3, ., 3, ., 10.78360.84720.6503N/AN/A
Q6S9V8CISY_THUOB2, ., 3, ., 3, ., 10.78360.84720.6503N/AN/A
Q7ZVY5CISY_DANRE2, ., 3, ., 3, ., 10.78680.84720.6517yesN/A
P34575CISY_CAEEL2, ., 3, ., 3, ., 10.72220.850.6538yesN/A
Q17GM7CISY1_AEDAE2, ., 3, ., 3, ., 10.85290.850.6552N/AN/A
Q9CZU6CISY_MOUSE2, ., 3, ., 3, ., 10.77120.850.6594yesN/A
A4H9H8CISY_LEIBR2, ., 3, ., 3, ., 10.57960.84440.6468yesN/A
O00098CISY_EMENI2, ., 3, ., 3, ., 10.68720.84720.6434yesN/A
P20115CISY4_ARATH2, ., 3, ., 3, ., 10.64530.86380.6561yesN/A
Q4S5X1CISY_TETNG2, ., 3, ., 3, ., 10.77040.84720.6503N/AN/A
Q4QDX3CISY_LEIMA2, ., 3, ., 3, ., 10.58280.84440.6468yesN/A
Q10306CISY_SCHPO2, ., 3, ., 3, ., 10.65470.84720.6314yesN/A
Q61JF9CISY_CAEBR2, ., 3, ., 3, ., 10.71890.850.6538N/AN/A
P00889CISY_PIG2, ., 3, ., 3, ., 10.78100.850.6594yesN/A
O75390CISY_HUMAN2, ., 3, ., 3, ., 10.78430.850.6566yesN/A
P51044CISY_ASPNG2, ., 3, ., 3, ., 10.69960.83610.6336yesN/A
Q28DK1CISY_XENTR2, ., 3, ., 3, ., 10.78100.850.6538yesN/A
Q0GNE1CISY_AMBCR2, ., 3, ., 3, ., 10.76720.84720.6503N/AN/A
P0C1Z2CISY_MACFA2, ., 3, ., 3, ., 10.78100.850.6566N/AN/A
Q0GNE0CISY_IGUIG2, ., 3, ., 3, ., 10.76720.84720.6503N/AN/A
Q0QHL3CISY_GLOMM2, ., 3, ., 3, ., 10.84510.86110.6666N/AN/A
Q7ZWZ5CISY_XENLA2, ., 3, ., 3, ., 10.78100.850.6538N/AN/A
Q16P20CISY2_AEDAE2, ., 3, ., 3, ., 10.83970.86660.6680N/AN/A
A4HXU4CISY_LEIIN2, ., 3, ., 3, ., 10.58590.84440.6468yesN/A
Q8VHF5CISY_RAT2, ., 3, ., 3, ., 10.76140.850.6566yesN/A
P00890CISY1_YEAST2, ., 3, ., 3, ., 10.65810.86660.6513yesN/A
Q553V1CISYM_DICDI2, ., 3, ., 3, ., 10.70620.83880.6565yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.3.1LOW CONFIDENCE prediction!
3rd Layer2.3.30.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd06105427 cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( 0.0
cd06103426 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) 0.0
TIGR01793427 TIGR01793, cit_synth_euk, citrate (Si)-synthase, e 0.0
PRK09569437 PRK09569, PRK09569, type I citrate synthase; Revie 1e-163
cd06106428 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc 1e-158
PLN02456455 PLN02456, PLN02456, citrate synthase 1e-145
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 1e-104
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 1e-102
COG0372390 COG0372, GltA, Citrate synthase [Energy production 9e-91
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 3e-82
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 4e-79
cd06114400 cd06114, EcCS_like, Escherichia coli (Ec) citrate 5e-33
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 2e-32
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 3e-31
PRK05614419 PRK05614, gltA, type II citrate synthase; Reviewed 4e-30
PRK14032447 PRK14032, PRK14032, citrate synthase; Provisional 8e-30
cd06110356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 7e-29
cd06116384 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) 4e-28
cd06113406 cd06113, citrate_synt_like_1_2, Citrate synthase ( 6e-28
TIGR01800368 TIGR01800, cit_synth_II, 2-methylcitrate synthase/ 2e-27
TIGR01798412 TIGR01798, cit_synth_I, citrate synthase I (hexame 2e-27
cd06115410 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath 2e-26
PRK14036377 PRK14036, PRK14036, citrate synthase; Provisional 3e-26
cd06111362 cd06111, DsCS_like, Cold-active citrate synthase ( 1e-22
PRK14035371 PRK14035, PRK14035, citrate synthase; Provisional 2e-22
PRK14034372 PRK14034, PRK14034, citrate synthase; Provisional 3e-21
PRK12349369 PRK12349, PRK12349, citrate synthase 3; Provisiona 6e-17
PRK14033375 PRK14033, PRK14033, citrate synthase; Provisional 7e-17
PRK14037377 PRK14037, PRK14037, citrate synthase; Provisional 2e-15
cd06108363 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-meth 1e-14
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 3e-11
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 3e-10
cd06117366 cd06117, Ec2MCS_like_1, Subgroup of Escherichia co 8e-09
PRK12351378 PRK12351, PRK12351, methylcitrate synthase; Provis 6e-07
PRK12350353 PRK12350, PRK12350, citrate synthase 2; Provisiona 1e-05
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information 
 Score =  658 bits (1699), Expect = 0.0
 Identities = 252/307 (82%), Positives = 279/307 (90%), Gaps = 1/307 (0%)

Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           ML+NFP +LHPMSQ SAAITALNSESKFAKAY +G+HKSKYWEYVYEDSMDLIAKLP VA
Sbjct: 122 MLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVA 181

Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           A IYRN ++GGK I AID+N DWSANF +MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 182 AKIYRNLYRGGK-IIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240

Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL KLQ++VG +VS+E+L+E++W
Sbjct: 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVW 300

Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
            TL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP+D LFKLVSQ+YK+VPPVL E GK
Sbjct: 301 KTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGK 360

Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
            KNPWPNVDAHSGVLLQYYGL EMNYYTVLFGVSRALGVL+ LIWDRALGLP+ERPKS+S
Sbjct: 361 AKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVLSQLIWDRALGLPLERPKSVS 420

Query: 301 TNDLVKQ 307
           T+ L K 
Sbjct: 421 TDGLEKL 427

Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). ScCit1 is a nuclear-encoded mitochondrial CS with highly specificity for AcCoA. In addition to its CS function, ScCit1 plays a part in the construction of the TCA cycle metabolon. Yeast cells deleted for Cit1 are hyper-susceptible to apoptosis induced by heat and aging stress. ScCit2 is a peroxisomal CS involved in the glyoxylate cycle; in addition to having activity with AcCoA, it may have activity with PrCoA. Chicken and pig heart CS, two Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and Aspergillus niger (An) CS also belong to this group. Ath CSY4 has a mitochondrial targeting sequence; AthCSY5 has no identifiable targeting sequence. AnCS encoded by the citA gene has both an N-terminal mitochondrial import signal and a C-terminal peroxisiomal target sequence; it is not known if both these signals are functional in vivo. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Length = 427
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type) Back     alignment and domain information
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional Back     alignment and domain information
>gnl|CDD|237590 PRK14033, PRK14033, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99861 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99870 cd06117, Ec2MCS_like_1, Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237070 PRK12350, PRK12350, citrate synthase 2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
PLN02456455 citrate synthase 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
PRK14036377 citrate synthase; Provisional 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
PRK14032447 citrate synthase; Provisional 100.0
PRK14035371 citrate synthase; Provisional 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
PRK14034372 citrate synthase; Provisional 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
PRK14033375 citrate synthase; Provisional 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
KOG2617|consensus458 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
PRK06224263 citrate synthase; Provisional 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
PLN02522608 ATP citrate (pro-S)-lyase 100.0
KOG1254|consensus600 99.62
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information 
Probab=100.00  E-value=1.2e-87  Score=677.28  Aligned_cols=305  Identities=82%  Similarity=1.319  Sum_probs=285.3

Q ss_pred             CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237          1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN   80 (360)
Q Consensus         1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~   80 (360)
                      +|++||+++|||++|+++|++|+++|+|.+.|+++.+++.+|+..++++++||||+|+|+|++||++ ++|+++++|+++
T Consensus       122 ~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~~~~~~~~~~~~~LiAk~p~i~A~~yr~~-~~g~~~~~pd~~  200 (427)
T cd06105         122 MLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVAAKIYRNL-YRGGKIIAIDSN  200 (427)
T ss_pred             HHHhCCCCCCHHHHHHHHHHhhhcccchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcCCCCCC
Confidence            3678999999999999999999999887666776777667899999999999999999999999962 468889999999


Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHH
Q psy14237         81 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK  160 (360)
Q Consensus        81 ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~  160 (360)
                      +||++|||+||+++++..+++||++||||||||++|+||||+||||||++|+|+||+|||++|+||+||||||+|++||+
T Consensus       201 ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTfaarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~  280 (427)
T cd06105         201 LDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLT  280 (427)
T ss_pred             cCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHHHHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHH
Confidence            99999999999988899999999999999999977999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCC
Q psy14237        161 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK  240 (360)
Q Consensus       161 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~  240 (360)
                      ++.+++|.+++++++++||++.+++|++||||||||||..|||+++|++++.++.++++++++++++++++.+++.++++
T Consensus       281 ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~  360 (427)
T cd06105         281 KLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGK  360 (427)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            99887776557889999999999999999999999999999999999999999888899999999999999888888888


Q ss_pred             CCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237        241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK  306 (360)
Q Consensus       241 ~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~  306 (360)
                      .|+++||||||+|++++.||||+.++||+||++||++||+||++||+..++||+||+|+|++.+.+
T Consensus       361 ~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~AH~~Eq~~~~~~I~RP~s~~~~~~~~  426 (427)
T cd06105         361 AKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVLSQLIWDRALGLPLERPKSVSTDGLEK  426 (427)
T ss_pred             CCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCcchhHHHHhh
Confidence            999999999999999999999855899999999999999999999999888999999999998754

Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>KOG2617|consensus Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>KOG1254|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
2cts_A437 Crystallographic Refinement And Atomic Models Of Tw 1e-148
4cts_A437 Crystal Structure Analysis And Molecular Model Of A 1e-148
6csc_A437 Chicken Citrate Synthase Complex With Trifluoroacet 1e-146
1amz_A435 Chicken Citrate Synthase Complex With Nitromethylde 1e-145
5csc_B429 Structure Of An Open Form Of Chicken Heart Citrate 1e-140
1csc_A433 Structure Of Ternary Complexes Of Citrate Synthase 1e-139
2h12_A436 Structure Of Acetobacter Aceti Citrate Synthase Com 3e-24
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 1e-23
3l96_A426 Structural Determination Of The A50t:s279g:s280k:v2 2e-22
1vgp_A373 Crystal Structure Of An Isozyme Of Citrate Synthase 8e-22
3msu_A427 Crystal Structure Of Citrate Synthase From Francise 9e-22
2ibp_A409 Crystal Structure Of Citrate Synthase From Pyrobacu 2e-21
1owb_A427 Three Dimensional Structure Analysis Of The Variant 3e-21
1k3p_A426 Three Dimensional Structure Analysis Of The Type Ii 3e-21
1nxe_A427 A Novel Nadh Allosteric Regulator Site Is Found On 4e-20
1aj8_A371 Citrate Synthase From Pyrococcus Furiosus Length = 5e-20
4e6y_A432 Type Ii Citrate Synthase From Vibrio Vulnificus Len 4e-19
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 4e-19
1vgm_A378 Crystal Structure Of An Isozyme Of Citrate Synthase 1e-13
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 8e-13
1a59_A378 Cold-Active Citrate Synthase Length = 378 4e-11
3tqg_A375 Structure Of The 2-Methylcitrate Synthase (Prpc) Fr 4e-10
2ifc_A385 The Structure Of The Binary Complex Of Oxalateaceta 1e-09
2r26_A384 The Structure Of The Ternary Complex Of Carboxymeth 1e-09
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 4e-09
3o8j_A404 Crystal Structure Of 2-Methylcitrate Synthase (Prpc 4e-09
3hwk_A414 Crystal Structure Of Methylcitrate Synthase From My 6e-08
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  520 bits (1338), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 239/306 (78%), Positives = 273/306 (89%)
Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           ML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAKLP VA
Sbjct: 127 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVA 186
Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           A IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 187 AKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAH 246
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL+++IW
Sbjct: 247 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIW 306
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
           NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 307 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGK 366
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
            KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 367 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 426
Query: 301 TNDLVK 306
           T+ L+K
Sbjct: 427 TDGLIK 432
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 Back     alignment and structure
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 Back     alignment and structure
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 Back     alignment and structure
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 Back     alignment and structure
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 Back     alignment and structure
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed With Oxaloacetate And Carboxymethyldethia Coenzyme A (Cmx) Length = 436 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|3L96|A Chain A, Structural Determination Of The A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate Synthase From E. Coli Length = 426 Back     alignment and structure
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 373 Back     alignment and structure
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 Back     alignment and structure
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum Aerophilum Length = 409 Back     alignment and structure
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l Nadh Complex Of Type Ii Citrate Synthase From E. Coli Length = 427 Back     alignment and structure
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii Citrate From E.Coli Length = 426 Back     alignment and structure
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The Surfa Hexameric Type Ii Phe383ala Variant Of Citrate Synthase Length = 427 Back     alignment and structure
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus Length = 371 Back     alignment and structure
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus Length = 432 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 378 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase Length = 378 Back     alignment and structure
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From Coxiella Burnetii Length = 375 Back     alignment and structure
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With Citrate Synthase From The Thermophilic Archaeon Thermolasma Acidophilum Length = 385 Back     alignment and structure
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum Length = 384 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From Salmonella Typhimurium Length = 404 Back     alignment and structure
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From Mycobacterium Tuberculosis Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 0.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 7e-44
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 1e-43
1iom_A377 Citrate synthase; open form, riken structural geno 2e-43
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 5e-43
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 8e-43
1vgp_A373 373AA long hypothetical citrate synthase; open for 2e-42
2p2w_A367 Citrate synthase; transferase, structural genomics 3e-42
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 4e-42
1vgm_A378 378AA long hypothetical citrate synthase; open for 1e-41
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 2e-41
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 2e-41
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 3e-41
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 4e-41
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 5e-41
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 2e-40
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 2e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
 Score =  529 bits (1365), Expect = 0.0
 Identities = 237/308 (76%), Positives = 271/308 (87%)

Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 184

Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           A IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 185 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 244

Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 245 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 304

Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
           NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 305 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 364

Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
            KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 424

Query: 301 TNDLVKQY 308
           T  L K  
Sbjct: 425 TAGLEKLS 432
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
Probab=100.00  E-value=2.7e-87  Score=676.55  Aligned_cols=308  Identities=77%  Similarity=1.283  Sum_probs=286.3

Q ss_pred             cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237          2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK   81 (360)
Q Consensus         2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l   81 (360)
                      |++||+++|||++|+++|++|+++++|+..|+++.++..+|++.++++++||||+|+|+|++||+++.+|.++++|++++
T Consensus       126 i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~l  205 (435)
T 1csh_A          126 LDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKL  205 (435)
T ss_dssp             HHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTS
T ss_pred             HHhCCccCChHHHHHHHHHHHhhcccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCC
Confidence            56799999999999999999999988887777665555678999999999999999999999997654454677999999


Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHHH
Q psy14237         82 DWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKK  161 (360)
Q Consensus        82 s~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~~  161 (360)
                      ||++|||+||+++++.++++||++||||||||++|+||||+||++||++|+|+||+|||++|+||+||||||+|++||++
T Consensus       206 s~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~  285 (435)
T 1csh_A          206 DWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQ  285 (435)
T ss_dssp             CHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHH
Confidence            99999999999989999999999999999995589999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCCC
Q psy14237        162 LQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKV  241 (360)
Q Consensus       162 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~  241 (360)
                      +.++||++.+++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.+||+++.+++.++++.
T Consensus       286 i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVyk~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~  365 (435)
T 1csh_A          286 LQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKA  365 (435)
T ss_dssp             HHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCCSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHhcCCceecCCccccCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            98888865568999999999999999999999999999999999999999998778999999999999998877788889


Q ss_pred             CCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHhh
Q psy14237        242 KNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYS  309 (360)
Q Consensus       242 k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~~  309 (360)
                      |+++||||||+|++|++||||+.++||+||++||++||+||++||+.++.+|+||+|+||+...+.++
T Consensus       366 k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~  433 (435)
T 1csh_A          366 KNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEKLSA  433 (435)
T ss_dssp             SCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHC
T ss_pred             CCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhHHHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhc
Confidence            99999999999999999999546999999999999999999999999987899999999999987764
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 3e-90
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 5e-56
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 3e-49
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 3e-45
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 2e-39
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 2e-36
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  275 bits (704), Expect = 3e-90
 Identities = 237/308 (76%), Positives = 271/308 (87%)

Query: 1   MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
           ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 184

Query: 61  ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
           A IYRN ++ G  IGAID+  DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 185 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 244

Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
           T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 245 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 304

Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
           NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 305 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 364

Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
            KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 424

Query: 301 TNDLVKQY 308
           T  L K  
Sbjct: 425 TAGLEKLS 432
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.8e-88  Score=680.79  Aligned_cols=308  Identities=77%  Similarity=1.286  Sum_probs=293.5

Q ss_pred             CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237          1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN   80 (360)
Q Consensus         1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~   80 (360)
                      +|++||+++|||++|+++||+|++++++..++.++.++..+||..++++++|||++|+|+|++||+.++.|+++++|+++
T Consensus       125 ~i~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~~~~~~~e~~~~~a~~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~  204 (435)
T d1csha_         125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSK  204 (435)
T ss_dssp             HHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTT
T ss_pred             HHHhhcCCccHHHHHHHHHHHhhccCccchhhcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCCCCCCC
Confidence            36789999999999999999999999998888888888888999999999999999999999999767899999999999


Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHH
Q psy14237         81 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK  160 (360)
Q Consensus        81 ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~  160 (360)
                      +||++||++||++++|.++++||++||||||||++|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||+
T Consensus       205 ls~a~nfl~ml~~~~p~~~~~l~~~lil~aDHeg~n~St~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~  284 (435)
T d1csha_         205 LDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLS  284 (435)
T ss_dssp             SCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHhcCccHHHHHHHHHHHHHHhhccCCcchHHHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            99999999999999999999999999999999879999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCC
Q psy14237        161 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK  240 (360)
Q Consensus       161 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~  240 (360)
                      ++.+.++...+++++++||++.+++|++||||||||||+.|||+++|+++++++..++++++++.++++++++++.++++
T Consensus       285 ~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~  364 (435)
T d1csha_         285 QLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK  364 (435)
T ss_dssp             HHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCCSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCCcccccCcccccCCCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcc
Confidence            99887766667899999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             CCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHh
Q psy14237        241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY  308 (360)
Q Consensus       241 ~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~  308 (360)
                      .|+++||||||+|+||++||||+.++||+||++||++||+||++||++.+.||+||+++|||+.++..
T Consensus       365 ~k~l~pNVD~~sg~~~~~lG~p~~~~~t~lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~~~Y~g~~~r~~  432 (435)
T d1csha_         365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEKLS  432 (435)
T ss_dssp             CSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHH
T ss_pred             cCCCCCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCccCCChhhhcc
Confidence            99999999999999999999986689999999999999999999999988899999999999998865
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure