Psyllid ID: psy14251

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70------

MDPDLKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTSGNTL

cccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccEEEEcccEEccccccc

ccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHccccccHEEEHEHcHccccEEEEEcccEccccccc

mdpdlkkgrdatpylernrvgrdaIDSAAALTDMGKYlfrerrlpvyDIAVAVTKKersgmiwlsnqfhltsgntl

mdpdlkkgrdatpylernrvgrdaidsAAALTDMGkylfrerrlpvYDIAVAVTkkersgmiwlsnqfhltsgntl

MDPDLKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTSGNTL

***********************AIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHL******

*******GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTSG***

********RDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTSGNTL

****LKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTS****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDPDLKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQFHLTSGNTL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		76
78707567		639	CG9850, isoform A [Drosophila melanogast	0.631	0.075	0.979	3e-20
442624584		638	CG9850, isoform F [Drosophila melanogast	0.631	0.075	0.979	3e-20
195148938		640	GL11073 [Drosophila persimilis] gi\|19410	0.631	0.075	0.979	4e-20
442624580		913	CG9850, isoform D [Drosophila melanogast	0.631	0.052	0.979	4e-20
345493675		797	PREDICTED: A disintegrin and metalloprot	0.631	0.060	1.0	5e-20
158300986		633	AGAP011737-PA [Anopheles gambiae str. PE	0.631	0.075	0.979	5e-20
195382103		1194	GJ21776 [Drosophila virilis] gi\|19414456	0.631	0.040	0.979	5e-20
195347196		672	GM15513 [Drosophila sechellia] gi\|194135	0.631	0.071	0.979	5e-20
198455724		889	GA24601 [Drosophila pseudoobscura pseudo	0.631	0.053	0.979	6e-20
195586152		998	GD25017 [Drosophila simulans] gi\|1941948	0.631	0.048	0.979	6e-20

>gi\|78707567\|ref\|NP_611827.2\| CG9850, isoform A [Drosophila melanogaster] gi\|73917620\|gb\|AAF47059.2\| CG9850, isoform A [Drosophila melanogaster] gi\|328751767\|gb\|AEB39639.1\| LP23513p [Drosophila melanogaster]	Back alignment and taxonomy information

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 48/48 (100%)

Query: 8   GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTK 55
           GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVA+TK
Sbjct: 371 GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAITK 418

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|442624584\|ref\|NP_001261158.1\| CG9850, isoform F [Drosophila melanogaster] gi\|440214609\|gb\|AGB93688.1\| CG9850, isoform F [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|195148938\|ref\|XP_002015419.1\| GL11073 [Drosophila persimilis] gi\|194109266\|gb\|EDW31309.1\| GL11073 [Drosophila persimilis]	Back alignment and taxonomy information

>gi\|442624580\|ref\|NP_001261157.1\| CG9850, isoform D [Drosophila melanogaster] gi\|440214607\|gb\|AGB93687.1\| CG9850, isoform D [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|345493675\|ref\|XP_001604414.2\| PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18-like isoform 1 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|158300986\|ref\|XP_552509.3\| AGAP011737-PA [Anopheles gambiae str. PEST] gi\|157013423\|gb\|EAL38880.3\| AGAP011737-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|195382103\|ref\|XP_002049771.1\| GJ21776 [Drosophila virilis] gi\|194144568\|gb\|EDW60964.1\| GJ21776 [Drosophila virilis]	Back alignment and taxonomy information

>gi\|195347196\|ref\|XP_002040140.1\| GM15513 [Drosophila sechellia] gi\|194135489\|gb\|EDW57005.1\| GM15513 [Drosophila sechellia]	Back alignment and taxonomy information

>gi\|198455724\|ref\|XP_002138124.1\| GA24601 [Drosophila pseudoobscura pseudoobscura] gi\|198135369\|gb\|EDY68682.1\| GA24601 [Drosophila pseudoobscura pseudoobscura]	Back alignment and taxonomy information

>gi\|195586152\|ref\|XP_002082842.1\| GD25017 [Drosophila simulans] gi\|194194851\|gb\|EDX08427.1\| GD25017 [Drosophila simulans]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		76
FB\|FBgn0034903		1102	CG9850 [Drosophila melanogaste	0.671	0.046	0.921	1.9e-19

FB\|FBgn0034903 CG9850 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 245 (91.3 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 47/51 (92%), Positives = 50/51 (98%)

Query:     5 LKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTK 55
             + +GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVA+TK
Sbjct:   368 ISRGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAITK 418


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  11 22  0.37    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  515 (55 KB)
  Total size of DFA:  92 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.56u 0.15s 7.71t   Elapsed:  00:00:01
  Total cpu time:  7.56u 0.15s 7.71t   Elapsed:  00:00:01
  Start:  Thu Aug 15 15:56:06 2013   End:  Thu Aug 15 15:56:07 2013

GO:0005575 "cellular_component" evidence=ND

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008283 "cell proliferation" evidence=NAS

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		76
cd04272		220	cd04272, ZnMc_salivary_gland_MPs, Zinc-dependent m	6e-08

>gnl\|CDD\|239800 cd04272, ZnMc_salivary_gland_MPs, Zinc-dependent metalloprotease, salivary_gland_MPs	Back alignment and domain information

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 7   KGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKK 56
           K  D  PY+         ID+A  L +  +Y+ ++R     D+   VT  
Sbjct: 57  KDPDFEPYIHPI--NYGYIDAAETLENFNEYVKKKRDYFNPDVVFLVTGL 104

Metalloproteases secreted by the salivary glands of arthropods. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		76
cd04272		220	ZnMc_salivary_gland_MPs Zinc-dependent metalloprot	92.17

>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs	Back alignment and domain information

Probab=92.17  E-value=0.19  Score=34.70  Aligned_cols=50  Identities=26%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             CCCCCchhhhcccccchhchhHHHHHhhhhhhhhcCCcceeeeeeeeecccc
Q psy14251          8 GRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERS   59 (76)
Q Consensus         8 ~~dAtpylE~nrv~~~~iDa~~AL~~Mg~YlyRE~RlP~YDiAia~T~lDmc   59 (76)
                      ..|..|+....  ....+|+...|....+|..+..-..-+|+|+-+|++|++
T Consensus        58 ~~~~~~~~~~~--~~~~~~~~~tL~~F~~~~~~~~~~~~~D~~~LlT~~~~~  107 (220)
T cd04272          58 DPDFEPYIHPI--NYGYIDAAETLENFNEYVKKKRDYFNPDVVFLVTGLDMS  107 (220)
T ss_pred             CcccceeeccC--CcccccHHHHHHHHHHHHhccCCCCcccEEEEEecccee
Confidence            44555544322  335578999999999997766544489999999999984

Metalloproteases secreted by the salivary glands of arthropods.

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		76
3b8z_A		217	Protein adamts-5; alpha/beta, hydrolase; HET: 294;	80.5

>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*	Back alignment and structure

Probab=80.50  E-value=0.98  Score=29.86  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=26.2

Q ss_pred             chhHHHHHhhhhhhhhcCC------c-ceeeeeeeeeccccc
Q psy14251         26 DSAAALTDMGKYLFRERRL------P-VYDIAVAVTKKERSG   60 (76)
Q Consensus        26 Da~~AL~~Mg~YlyRE~Rl------P-~YDiAia~T~lDmc~   60 (76)
                      |++..|...++|  |++.+      | -+|+|+.+|..|.|+
T Consensus        70 ~~~~~L~~F~~w--~~~~~~~~~~~~~~~D~a~LlT~~~~~~  109 (217)
T 3b8z_A           70 NAATTLKNFCKW--QHQHNQLGDDHEEHYDAAILFTREDLCG  109 (217)
T ss_dssp             BHHHHHHHHHHH--HHHHSCSSTTSTTCCSEEEEEESSCCBC
T ss_pred             CHHHHHHHHHHH--HHhccccccccCCCCceEEEEecccccC
Confidence            678899999986  44433      2 499999999999985

PyMOL of 3b8z

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00